|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
2-318 |
5.84e-96 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 286.62 E-value: 5.84e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 2 SQATLKKIINTYGMVLILIILFLLLSVSIEGFFSARTVWSIIEQVSMFGIIAIGVTFAIITTGIDLSSGSVVALTSVVAA 81
Cdd:COG1172 8 ARSLLRRLLPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 82 SMVTGGDLasSAILAFAMSLALGAFLGAINGGLTALGSIPPFIATLGMMIIARGAAQLYSAGRPIDASSETFTWIADVNI 161
Cdd:COG1172 88 LLLVALGL--PILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDAFRALGQGSL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 162 LGLPGLVILYILIVIGSHILLSRSTFGRHVYAVGGNLNAAKICGINTTKTLILVYTFAGALSGLAGALLAARTYAGNPSY 241
Cdd:COG1172 166 LGIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNA 245
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 763129411 242 GLAWELDAIAAAVIGGVSLSGGFGTIPMCVIGALIIGTTNKGLNMLGVDPYWQQIVKGGIIVIAVLLDTLKRRRKAA 318
Cdd:COG1172 246 GSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRRRRAR 322
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
46-309 |
2.13e-77 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 237.31 E-value: 2.13e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 46 VSMFGIIAIGVTFAIITTGIDLSSGSVVALTSVVAASMVTGGDLasSAILAFAMSLALGAFLGAINGGLTALGSIPPFIA 125
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGL--PIPLAILAALAVGALIGLLNGLLVAYLRIPPFIV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 126 TLGMMIIARGAAQLYSAGRPIDASSETFTW-IADVNILGLPGLVILYILIVIGSHILLSRSTFGRHVYAVGGNLNAAKIC 204
Cdd:cd06579 79 TLGTMFILRGLALLITGGRPISGLPPLFSFfLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLS 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 205 GINTTKTLILVYTFAGALSGLAGALLAARTYAGNPSYGLAWELDAIAAAVIGGVSLSGGFGTIPMCVIGALIIGTTNKGL 284
Cdd:cd06579 159 GINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGL 238
|
250 260
....*....|....*....|....*
gi 763129411 285 NMLGVDPYWQQIVKGGIIVIAVLLD 309
Cdd:cd06579 239 NLLGVSSFWQQIVKGAILLLAVALD 263
|
|
| COG4158 |
COG4158 |
Predicted ABC-type sugar transport system, permease component [General function prediction ... |
4-318 |
9.91e-73 |
|
Predicted ABC-type sugar transport system, permease component [General function prediction only];
Pssm-ID: 443324 Cd Length: 334 Bit Score: 227.50 E-value: 9.91e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 4 ATLKKIINTYGMVLILIILFLLLSVSIEGFFSARTVWSIIEQVSMFGIIAIGVTFAIITTGIDLSSGSVVALTSVVAASM 83
Cdd:COG4158 21 FRLRSLLQAVGMLPVLILLCIGFELLTPNFLTVQNLSNIARQASINIVLAAGMTFVILTGGIDLSVGSILAASAVVAVLV 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 84 VTGGDLASSAILAFamsLALGAFLGAINGGLTALGSIPPFIATLGMMIIARGAAQLYSAGRPIDASSETFTWIADVNILG 163
Cdd:COG4158 101 SLLPGLGLLGIPAA---LLVGLLFGLINGLLIAFLKLPPFIVTLGSLTALRGAARLLANGTTVFNPDLPFAWIGNGYLLG 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 164 LPGLVILYILIVIGSHILLSRSTFGRHVYAVGGNLNAAKICGINTTKTLILVYTFAGALSGLAGALLAARTYAGNP-SYG 242
Cdd:COG4158 178 IPWLVVIALAVVLASWFILRRTVLGVHIYAVGGNAQAARLTGIKVWRVLLFVYAVSGLLAGLGGVMSAARLYAANGlQLG 257
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 763129411 243 LAWELDAIAAAVIGGVSLSGGFGTIPMCVIGALIIGTTNKGLNMLGVDPYWQQIVKGGIIVIAVLLDTLKRRRKAA 318
Cdd:COG4158 258 QGYELDAIAAVILGGTSFVGGIGSIWGTLIGALIIAVLNNGLILLGVSDFWQFIIKGLVIIIAVALDRYRQRGSAR 333
|
|
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
33-318 |
1.23e-68 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 218.83 E-value: 1.23e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 33 FFSARTVWSIIEQVSMFGIIAIGVTFAIITTGIDLSSGSVVALTSVVAASMVTGGDLasSAILAFAMSLALGAFLGAING 112
Cdd:COG4214 46 FLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLSVGSVSGFVGAVAAVLMVNWGL--PWWLAILAALLVGALIGAWQG 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 113 GLTALGSIPPFIATLGMMIIARGAAQLYSAGRPIDASSETFTWIADVNI------------------------------- 161
Cdd:COG4214 124 FWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGGTIAPFDPTFQAIGNGFLpdilgtlswvlgavavaayvalqlrsrrrrr 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 162 ---------------------------------LGLPGLVILYILIVIGSHILLSRSTFGRHVYAVGGNLNAAKICGINT 208
Cdd:COG4214 204 ryglpveplwlfvlklallavlilgavyllnsyRGIPIVVLILLVLVVVYTFVLTRTVFGRHIYAVGGNPEAARLSGINV 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 209 TKTLILVYTFAGALSGLAGALLAARTYAGNPSYGLAWELDAIAAAVIGGVSLSGGFGTIPMCVIGALIIGTTNKGLNMLG 288
Cdd:COG4214 284 RRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGTGFELDAIAAAVIGGTSLFGGVGTVYGAVIGALVMGSLNNGMSLLG 363
|
330 340 350
....*....|....*....|....*....|
gi 763129411 289 VDPYWQQIVKGGIIVIAVLLDTLKRRRKAA 318
Cdd:COG4214 364 VDSDWQQIVKGLVLLLAVAFDVLSRRRRGA 393
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
33-310 |
2.46e-68 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 216.12 E-value: 2.46e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 33 FFSARTVWSIIEQVSMFGIIAIGVTFAIITTGIDLSSGSVVALTSVVAASMVTggdLASSAILAFAMSLALGAFLGAING 112
Cdd:PRK09512 39 FFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVG---IEVNALVAVPAALALGAAIGAVTG 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 113 GLTALGSIPPFIATLGMMIIARGAAQLYSAGRPIDA----SSETFTWIADVNILGLPGLVILYILIVIGSHILLSRSTFG 188
Cdd:PRK09512 116 VIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPINTgftdNADLFGWFGIGRPLGIPTPVWIMAIVFLAAWYMLHHTRLG 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 189 RHVYAVGGNLNAAKICGINTTKTLILVYTFAGALSGLAGALLAARTYAGNPSYGLAWELDAIAAAVIGGVSLSGGFGTIP 268
Cdd:PRK09512 196 RYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIV 275
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 763129411 269 MCVIGALIIGTTNKGLNMLGVDPYWQQIVKGGIIVIAVLLDT 310
Cdd:PRK09512 276 GTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDN 317
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
33-316 |
2.54e-65 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 208.77 E-value: 2.54e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 33 FFSARTVWSIIEQVSMFGIIAIGVTFAIITTGIDLSSGSVVALTSVVAASMVTGGDLASSA---------ILAFAMSLAL 103
Cdd:PRK09478 36 FLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQSMDNANKVfpelatmpiALVILIVCAI 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 104 GAFLGAINGGLTALGSIPPFIATLGMMIIARGAAQLY---SAGRPIDASSETFTWIADVNI----LGLPGLVILYILIVI 176
Cdd:PRK09478 116 GAVIGLINGLIIAYLNVTPFIATLGTMIIVYGINSLYydfVGASPISGFDSGFSTFAQGFValgsFRLSYITFYALIAVA 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 177 GSHILLSRSTFGRHVYAVGGNLNAAKICGINTTKTLILVYTFAGALSGLAGALLAARTYAGNPSYGLAWELDAIAAAVIG 256
Cdd:PRK09478 196 FVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVG 275
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 257 GVSLSGGFGTIPMCVIGALIIGTTNKGLNMLGVDPYWQQIVKGGIIVIAVLLDTLKRRRK 316
Cdd:PRK09478 276 GVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVALDSLKYARK 335
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
1-318 |
2.22e-59 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 193.36 E-value: 2.22e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 1 MSQATLKKIINTYGMVLILIILFLLLSVSIEGFFSARTVWSIIEQVSMFGIIAIGVTFAIITTGIDLSSGSVVALTSVVA 80
Cdd:PRK11285 18 KSRFSLWRIWDQYGMLVVFAVLFIACSLFVPNFASFINMKGLGLAISMIGMVACTMLFCLASGDFDLSVASVVAFAGVVT 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 81 ASMVTGGDlasSAILAFAMSLALGAFLGAINGGLTALGSIPPFIATLGMMIIARGAAQLYSAGRPIDASSETFTWIADVN 160
Cdd:PRK11285 98 AVVINATE---SLWLGVAAGLLLGAAVGLVNGFVIARLKINALITTLATMQIVRGLAYIISDGKAVGISDERFFALGYAN 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 161 ILGLPGLVILYILIVIGSHILLSRSTFGRHVYAVGGNLNAAKICGINTTKTLILVYTFAGALSGLAGALLAARTYAGNPS 240
Cdd:PRK11285 175 FFGVPAPIWLTVACFVVFGFLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSALAGVILASRMTSGQPM 254
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 763129411 241 YGLAWELDAIAAAVIGGVSLSGGFGTIPMCVIGALIIGTTNKGLNMLGVDPYWQQIVKGGIIVIAVLLDTLKRRRKAA 318
Cdd:PRK11285 255 TSIGFELIVISACVLGGVSLKGGIAKISGVVAGVLILGTVENAMNLLNISPFYQYVVRGLILLAAVLFDRYKQRAKRT 332
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
27-311 |
3.56e-54 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 179.20 E-value: 3.56e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 27 SVSIEGFFSARTVWSIIEQVSMFGIIAIGVTFAIITTGIDLSSGSVVALTSVVAAS-MVTGGDLASSAILAfamSLALGA 105
Cdd:PRK09699 27 SLSPEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKlMLAGVDPFLAALIG---GVLVGG 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 106 FLGAINGGLTALGSIPPFIATLGMMIIARGAAQLYSAGRPIDASSETFTWIADVNILGLPGLVILYILIVIGSHILLSRS 185
Cdd:PRK09699 104 ALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFAASVIGIPVPVIFSLIVALILWFLTTRM 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 186 TFGRHVYAVGGNLNAAKICGINTTKTLILVYTFAGALSGLAGALLAARTYAGNPSYGLAWELDAIAAAVIGGVSLSGGFG 265
Cdd:PRK09699 184 RLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFETYAIASAIIGGTSFFGGKG 263
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 763129411 266 TIPMCVIGALIIGTTNKGLNMLGVDPYWQQIVKGGIIVIAVLLDTL 311
Cdd:PRK09699 264 RIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALDRL 309
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
13-315 |
2.61e-52 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 176.11 E-value: 2.61e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 13 YGMVLILIILFLLLSVSIEG-FFSARTVWSIIEQVSMFGIIAIGVTFAIITTGIDLSSGSVVALTSVVAASMVTGGDLas 91
Cdd:NF040906 5 YGMLIALVAIVVLFQILTGGiLLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNWGM-- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 92 SAILAFAMSLALGAFLGAINGGLTALGSIPPFIATLGMMIIARGAAQLYSAGRPIDASSETFTWIA-----------DVN 160
Cdd:NF040906 83 PWWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIGPFPDGFQKISsgflpdlfggtGLH 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 161 IL----------------------------------------------------------GLPGLVILYILIVIGSHILL 182
Cdd:NF040906 163 LLtlllgvlaaaalvwsqlrgrrrrikyglevepmalfiaklvliaaailfftyllasyrGLPNVLIILGVLILVYSFVT 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 183 SRSTFGRHVYAVGGNLNAAKICGINTTKTLILVYTFAGALSGLAGALLAARTYAGNPSYGLAWELDAIAAAVIGGVSLSG 262
Cdd:NF040906 243 NRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASG 322
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 763129411 263 GFGTIPMCVIGALIIGTTNKGLNMLGVDPYWQQIVKGGIIVIAVLLDTLKRRR 315
Cdd:NF040906 323 GVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFDVYNKRK 375
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
27-317 |
2.39e-44 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 153.95 E-value: 2.39e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 27 SVSIEGFFSARTVWSIIEQVSMFGIIAIGVTFAIITTGIDLSSGSVVALTSVVAASMVtgGDLASSAILAFAMSLALGAF 106
Cdd:PRK11618 23 LVQFPGFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLI--GDYGWSPLLAFPLVLVMGAA 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 107 LGAINGGLTALGSIPPFIATLGMMIIARGAAQLYSAGR-PIDAssETFTWIADVNILgLPG------LVILYILIVIGSH 179
Cdd:PRK11618 101 FGAFMGALIHYLKLPAFIVTLAGMFLARGVSFLVSEESiPINH--PFYDTLSSLAWK-LPGggrlsaMALIMLAVVAIGI 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 180 ILLSRSTFGRHVYAVGGNLNAAKICGINTTKTLILVYTFAGALSGLAGALLAARTYAGNPSYGLAWELDAIAAAVIGGVS 259
Cdd:PRK11618 178 FLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYALAAVGVELDAIAAVVIGGTL 257
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 763129411 260 LSGGFGTIPMCVIGALIIGTTNKGLNMLG-VDPYWQQIVKGGIIVIAVLLDTLKRRRKA 317
Cdd:PRK11618 258 LTGGVGTVLGTLFGVLIQGLIQTYITFDGtLSSWWTKIVIGILLFVFIALQRGLTVLAE 316
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
32-308 |
9.24e-33 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 123.69 E-value: 9.24e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 32 GFFSARTVWSIIEQVSMFGIIAIGVTFAIITTGIDLSSGSVVALTSVVAASMVTGGdlaSSAILAFAMSLALGAFLGAIN 111
Cdd:PRK15432 30 QYLSLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVLVGMLLNAG---YSLPVACLATLLLGLLAGFFN 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 112 GGLTALGSIPPFIATLGMMIIARGAAQLYSAGRPIDASSETFTWIADVNILGLPGLVILYILIVIGSHILLSRSTFGRHV 191
Cdd:PRK15432 107 GVLVAWLRIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAELKQLSAPILLGISPIGWLTLILILAMAWLLAKTAFGRSF 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 192 YAVGGNLNAAKICGINTTKTLILVYTFAGALSGLAGALLAARTYAGNPSYGLAWELDAIAAAVIGGVSLSGGFGTIPMCV 271
Cdd:PRK15432 187 YATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGLEMKAIAACVLGGISLLGGSGTIIGAV 266
|
250 260 270
....*....|....*....|....*....|....*..
gi 763129411 272 IGALIIGTTNKGLNMLGVDPYWQQIVkGGIIVIAVLL 308
Cdd:PRK15432 267 LGAYFLTQIDSVLVLLRIPAWWNDFI-AGLVLLGVLV 302
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
50-307 |
2.08e-24 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 101.06 E-value: 2.08e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 50 GIIAIGVTFAIITTGIDLSSGSVVALTSVVAASMVTGGDLASSAILafaMSLALGAFLGAINGGLTALGSIPPFIATLGM 129
Cdd:PRK15038 46 GIVALPLTMVIVSGGIDISFGSTIGLCAIALGVLFQSGVPMPLAIL---LTLLLGALCGLINAGLIIYTGVNPLVITLGT 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 130 MIIARGAAQLYSA------GRPIDASSETFTWIADVNILGLPGLVILYILIVIGSHILLSRSTFGRHVYAVGGNLNAAKI 203
Cdd:PRK15038 123 LYLFGGSALLLSGmagatgYEGIGGFPMAFTDFANLDVLGLPVPLIIFLICLLVFWLLMHRTHAGRNVFLIGQSPRVALY 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 204 CGINTTKTLILVYTFAGALSGLAGALLAARTYAGNPSYGLAWELDAIAAAVIGGVSLSGGFGTIPMCVIGALIIGTTNKG 283
Cdd:PRK15038 203 SAIPVNRTLCALYAMTGLASAIAAVLLVSYFGSARSDLGASFLMPAITAVVLGGANIYGGSGSIIGTALAVLLVGYLQQG 282
|
250 260
....*....|....*....|....
gi 763129411 284 LNMLGVDPYWQQIVKGGIIVIAVL 307
Cdd:PRK15038 283 LQMAGVPNQISSALSGALLIVVVV 306
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
41-306 |
2.33e-24 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 99.64 E-value: 2.33e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 41 SIIEQVSMFGIIAIGVTFAIITTG-IDLSSGSVVALTSVVAASMVTGGDLASSAILAFAMslALGAFLGAINGGLTALGS 119
Cdd:pfam02653 4 NILTLASIYAIAALGLTLIYGIAGvINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGI--LVGAAVGLLIGILTLRLK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 120 IPPFIATLGMMIIARGAAQLYSAG-----RPIDASSETFTWIADVNILGLPGLVILYILIVIGSHILLSRSTFGRHVYAV 194
Cdd:pfam02653 82 INEVIITLLLNLAALGLALFLVTGilggeGGTSGITGPSGFPGAFLSFAFAFIFLLALLLVLALWLLLYRTKFGRALRAV 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 195 GGNLNAAKICGINTTKTLILVYTFAGALSGLAGALLAARTYAGNPS-YGLAWELDAIAAAVIGGVslsggfGTIPMCVIG 273
Cdd:pfam02653 162 GENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSnFGVGLGLDAIAAVVLGGA------GSPIGVVIG 235
|
250 260 270
....*....|....*....|....*....|....
gi 763129411 274 ALIIGTTNK-GLNMLGVDPYWQQIVKGGIIVIAV 306
Cdd:pfam02653 236 SLIIGLVQSlGLGALGSPPELSLLVLGALLILVL 269
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
49-306 |
8.92e-20 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 86.95 E-value: 8.92e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 49 FGIIAIGVTFAIITTGI-DLSSGSVVALTSVVAASMVTGGDlasSAILAFAMSLALGAFLGAINGGLTALGSIPPFIATL 127
Cdd:cd06574 4 YAILALGVYIVFRILGFpDLTVDGSFPLGAAVAAILIVAGY---NPWLALIAAILAGAAAGLVTGFLHTRLKINGLLAGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 128 GMMIIARGAAQLYSAGRPI-----DASSETFTWIADVNILGLPGLVILYILIVIGSHILLSRSTFGRHVYAVGGNLNAAK 202
Cdd:cd06574 81 LIMIGLYSINLRIMGGPNIplgtrDTLLGLLLLFGISGTLSIPVVLLLIVLLVLFLVIWFLRTKLGLAMRATGDNPDMAR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 203 ICGINTTKTLILVYTFAGALSGLAGALLAARTYAGNPSYGLAWELDAIAAAVIGGVSLSG--GFGTIPMCVIGALIIGTT 280
Cdd:cd06574 161 SLGINVDRTRILGLVISNALAALGGALYAQYQGFADVNMGIGTGVIGLAAVIIGGAIVGRrtIKASILGVIIGAILYRIA 240
|
250 260
....*....|....*....|....*.
gi 763129411 281 NKGLNMLGVDPYWQQIVKGGIIVIAV 306
Cdd:cd06574 241 LALALGSGLIPSDLKLITAGVIVLVL 266
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
47-308 |
1.20e-17 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 81.26 E-value: 1.20e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 47 SMFGIIAIGVTFAIITTG-IDLSSGSVVALTSVVAASMVT--GGDLASSAILAFAMSLALGAFL--GAINGgLTALGSIP 121
Cdd:COG0559 16 SIYALIALGLTLIFGVMGvINFAHGEFVMLGAYVAYTLATllGLPLWLALLLAVLVAALLGVLLerLVIRP-LRGAPPLA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 122 PFIATLGMMIIARGAAQLY--SAGRPIDASSETFTWIADVNILGLPGLVILY-ILIVIGSHILLSRSTFGRHVYAVGGNL 198
Cdd:COG0559 95 LLLATIGLSLVLQGLVLLIfgADPRSFPALLSGSVELGGVSIPAYRLFIIVVaLVLLAALWLFLRRTRLGLAMRAVAQNR 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 199 NAAKICGINTTKTLILVYTFAGALSGLAGALLAARTYAgNPSYGLAWELDAIAAAVIggvslsGGFGTIPMCVIGALIIG 278
Cdd:COG0559 175 EAARLMGINVDRVIALTFALGAALAGLAGVLLAPIYSV-SPTMGFLLGLKAFAAVVL------GGLGSIPGAVVGGLLLG 247
|
250 260 270
....*....|....*....|....*....|
gi 763129411 279 TTNKGLNMLgVDPYWQQIVkGGIIVIAVLL 308
Cdd:COG0559 248 LAESLGAAY-LPSGYKDVV-AFVLLILVLL 275
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
47-278 |
5.28e-16 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 76.32 E-value: 5.28e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 47 SMFGIIAIGVTFAIITTG-IDLSSGSVVALTSVVAASMVTGGDLasSAILAFAMSLALGAFLGAINGGL----TALGSIP 121
Cdd:cd06582 6 AIYALIALGLTLIFGVTGvINFAHGEFYMLGAYVAYTLLVALGL--PFWLALLLALLVAALLGVLLERLvlrpLRGAPLL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 122 PFIATLGMMIIARGAAQLYSAGRPIDASSETFTWIADVNILGLPGLVILYI----LIVIGSHILLSRSTFGRHVYAVGGN 197
Cdd:cd06582 84 TLLITFGGLLILLQGLLLIFGGDPRVPPPPLLSGSVELGGVTIPPYRLFIIavalVLLAALYLFLRRTRLGRAIRAVAQN 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 198 LNAAKICGINTTKTLILVYTFAGALSGLAGALLAARTYAgNPSYGLAWELDAIAAAVIggvslsGGFGTIPMCVIGALII 277
Cdd:cd06582 164 PEAARLLGINVRRVFALTFALGAALAGLAGVLLAPITGV-SPTMGLLLLLKAFAAVVL------GGLGSIPGAVVGGLLL 236
|
.
gi 763129411 278 G 278
Cdd:cd06582 237 G 237
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
46-308 |
3.21e-11 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 62.46 E-value: 3.21e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 46 VSMFGIIAIGVTFAIITTG-IDLSSGSVVALTSVVAASMVTGGDLasSAILAFAMSLALGAFLGAINGGLTA-LGSIPPF 123
Cdd:cd06581 1 ILIYAILALGLNLLLGYAGqLSLGHAAFFGIGAYTAALLATRLGL--PFWLALLAAGLVAALVGLLLGLPALrLRGVYFA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 124 IATLGMMIIARGAAQLY------SAGRPIdASSETFTWIADVNILGLPGLVILYILIVIGSHILLSRSTFGRHVYAVGGN 197
Cdd:cd06581 79 IATLAFAEIVRLLALNWssltggSNGLSG-IPPPLLGGLLLSSPLAFYYLVLAVLLLVLLLLRRLVRSPFGRALRAIREN 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 198 LNAAKICGINTTKTLILVYTFAGALSGLAGALLAART-YAGNPSYGLAWELDAIAAAVIGGVslsggfGTIPMCVIGALI 276
Cdd:cd06581 158 EVAAEALGINVTRYKLLAFALSAALAGLAGALYAHYLgFVSPESFGFALSIELLLMVVLGGL------GSLLGPVLGAAL 231
|
250 260 270
....*....|....*....|....*....|..
gi 763129411 277 IGTTNKGLNMLGvdPYWQQIVKGGIIVIAVLL 308
Cdd:cd06581 232 LVLLPELLRSLG--PGLRLLVFGLLLILVVLF 261
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
92-308 |
8.11e-11 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 61.64 E-value: 8.11e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 92 SAILAFAMSLALGAFLGAINGGLTA-LGSIPPFIATLGMMIIARgaaQLYSAGRPIDASSETFTWIADVNILGLP----- 165
Cdd:COG4177 56 PFWLALLLAGLVAALLGLLIGLPALrLRGDYLAIATLAFAEIVR---LLALNLESLTGGADGLSGIPRPTLFGLDlgspl 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 166 ---GLVILYILIVIGSHILLSRSTFGRHVYAVGGNLNAAKICGINTTKTLILVYTFAGALSGLAGALLAARTYAGNP-SY 241
Cdd:COG4177 133 afyYLVLALLVLVLLLLRRLVRSRFGRALRAIRENEIAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVGFVSPeSF 212
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 763129411 242 GLAWELDAIAAAVIGGVslsggfGTIPMCVIGALIIGTtnkGLNMLGVDPYWQQIVKGGIIVIAVLL 308
Cdd:COG4177 213 SFLLSIEILLMVVLGGL------GSLLGPVLGAVLLVL---LPELLRSLPEYRLLIFGLLLILVVLF 270
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
74-257 |
8.93e-10 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 57.83 E-value: 8.93e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 74 ALTSVVAASMVTGGDLASsAILAFAMSLALGAFLGAINGGLTALGSIPPFIATLGMMIIARGAAQLysagrpidassetf 153
Cdd:cd06580 32 AFAAALVALYLGLPATGS-LPLGLLAAALAGALWALLPALLKAKLGVNEVISGLMLNYIALGLTSY-------------- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 154 twiadvnilglpgLVILYILIVIGSHILLSRSTFGRHVYAVGGNLNAAKICGINTTKTLILVYTFAGALSGLAGALLAA- 232
Cdd:cd06580 97 -------------LLLLALLLVILVWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGAYLVLg 163
|
170 180
....*....|....*....|....*..
gi 763129411 233 --RTYAGNPSYGLAWelDAIAAAVIGG 257
Cdd:cd06580 164 vqGRFTEGMSAGYGF--IAIAVALLGR 188
|
|
| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
74-315 |
3.56e-09 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 57.05 E-value: 3.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 74 ALTSVVAASMVTGGDLASSAILAFAMSLALGAFLGAINGGLTALGSIPPFIATLGMMIIA------------RGAAQLYS 141
Cdd:COG4603 97 ALAAAAVGLALPGLPGPLHLPLALLAGALAGALWAAIPGLLKARFGVNEVITTLMLNYIAlylvnylvrgplRDPGSGFP 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 142 AGRPIDASSETFTWIADvniLGLPGLVILYILIVIGSHILLSRSTFGRHVYAVGGNLNAAKICGINTTKTLILVYTFAGA 221
Cdd:COG4603 177 QTPPIPESARLPRLLPG---TRLHLGLLIALLAAVLVWVLLNRTTLGYELRAVGLNPRAARYAGINVKRLIVLAMLISGA 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 222 LSGLAGALLAARTY-----AGNPSYGlaweLDAIAAAVIGGvslSGGFGTIPMCV-IGALIIGttnkGLNM---LGVDPY 292
Cdd:COG4603 254 LAGLAGAVEVLGVQgrltpGFSPGYG----FTGIAVALLGR---NNPLGIILAALlFGALYVG----GDAMqraLGVPSE 322
|
250 260
....*....|....*....|...
gi 763129411 293 WQQIVKGGIIVIAVLLDTLKRRR 315
Cdd:COG4603 323 IVDVIQGLIILFVLAADFLIRYR 345
|
|
| NupQ |
COG1079 |
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and ... |
74-231 |
3.94e-07 |
|
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and metabolism];
Pssm-ID: 440697 [Multi-domain] Cd Length: 309 Bit Score: 50.84 E-value: 3.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 74 ALTSVVAASMvTGgdlasSAILAFAMSLALGAFLGAINGGLTALGSIPPFIATLGMMIIARGAA----QLYSAGRPIDAS 149
Cdd:COG1079 49 AFAGFAVAYL-TG-----SPWLGLLAAALAGALLALLHAFLTITLRANQIVSGLALNLLALGLTaflgRLLFGQGGQTPS 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 150 SETFT-----WIADVNILG-----LPGLVILYILIVIGSHILLSRSTFGRHVYAVGGNLNAAKICGINTTKTLILVYTFA 219
Cdd:COG1079 123 IPGLPpipipGLSDIPVLGpllfgQSPLVYLALLLVPLVWWVLYRTRFGLRLRAVGENPAAADALGINVYRIRYLAVLIG 202
|
170
....*....|..
gi 763129411 220 GALSGLAGALLA 231
Cdd:COG1079 203 GALAGLGGAYLS 214
|
|
| COG4120 |
COG4120 |
ABC-type uncharacterized transport system, permease component [General function prediction ... |
39-231 |
5.90e-07 |
|
ABC-type uncharacterized transport system, permease component [General function prediction only];
Pssm-ID: 443296 Cd Length: 296 Bit Score: 50.12 E-value: 5.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 39 VWSIIEQVSMFGIIAIGV--TFAIITTGiDLSSGSVVALTSVVAASMVTGGdlaSSAILAFAMSLALGAFLGAINGGLTA 116
Cdd:COG4120 6 LIGALEQGLIYAIMALGVyiTFRILDFP-DLTVDGSFPLGAAVAAVLIVAG---VNPFLATLAAFLAGALAGLVTGLLHT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 117 LGSIPPFIATLGMMIIargaaqLYS-----AGRP---IDASSETFTWIADVNILGLPGLVILYILIVIGSHILLS---RS 185
Cdd:COG4120 82 KLKIPPLLAGILTMTA------LYSinlriMGKPnipLLGEDTIFTLLPDLGLPGDWAKLLVLLVIVLVIKLLLDwflKT 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 763129411 186 TFGRHVYAVGGNLNAAKICGINTTKTLILVYTFAGALSGLAGALLA 231
Cdd:COG4120 156 ELGLALRATGDNPQMARALGINTDRMKILGLALSNGLVALSGALVA 201
|
|
| PRK10740 |
PRK10740 |
high-affinity branched-chain amino acid ABC transporter permease LivH; |
169-280 |
1.61e-05 |
|
high-affinity branched-chain amino acid ABC transporter permease LivH;
Pssm-ID: 182689 [Multi-domain] Cd Length: 308 Bit Score: 45.68 E-value: 1.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763129411 169 ILYILIVIGSHILLSRSTFGRHVYAVGGNLNAAKICGINTTKTLILVYTFAGALSGLAGALLAARTYAGNPSYGLAWELD 248
Cdd:PRK10740 162 IVTFLAMLALTIFIRYSRMGRACRACAEDLKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQFYGVINPYIGFMAGMK 241
|
90 100 110
....*....|....*....|....*....|..
gi 763129411 249 AIAAAVIGGVslsggfGTIPMCVIGALIIGTT 280
Cdd:PRK10740 242 AFTAAVLGGI------GSIPGAMIGGLILGIA 267
|
|
| |
