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Conserved domains on  [gi|764497026|ref|WP_044393560|]
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YgdI/YgdR family lipoprotein [Pseudomonas syringae group genomosp. 3]

Protein Classification

YgdI/YgdR family lipoprotein( domain architecture ID 3632)

YgdI/YgdR family lipoprotein is a DUF903 domain-containing protein; similar to Escherichia coli lipoproteins, YgdI and YgdR

CATH:  2.30.30.100
Gene Ontology:  GO:0005886
SCOP:  4001696

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
lipo_YgdI_YgdR NF033216
YgdI/YgdR family lipoprotein; Members of this family are exclusively lipoproteins of small ...
 3-73 6.03e-29

YgdI/YgdR family lipoprotein; Members of this family are exclusively lipoproteins of small size, including YgdI and YgdR from E. coli K-12.


:

Pssm-ID: 468001  Cd Length: 71  Bit Score: 97.95  E-value: 6.03e-29
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 764497026  3 IKSLAFPVLASGFVLLAGCSTPSVVTLQNGTQYITKDMPKTKSRDGFYEFEDLSGKTIRIKADEVATVKPE 73
Cdd:NF033216  1 KKLLAALLAALALLALAGCSSPYVITTNDGRTIVTDGKPEYDKDTGLYEYEDADGKTQQINKDDVKTIKEL 71
 
Name Accession Description Interval E-value
lipo_YgdI_YgdR NF033216
YgdI/YgdR family lipoprotein; Members of this family are exclusively lipoproteins of small ...
 3-73 6.03e-29

YgdI/YgdR family lipoprotein; Members of this family are exclusively lipoproteins of small size, including YgdI and YgdR from E. coli K-12.


Pssm-ID: 468001  Cd Length: 71  Bit Score: 97.95  E-value: 6.03e-29
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 764497026  3 IKSLAFPVLASGFVLLAGCSTPSVVTLQNGTQYITKDMPKTKSRDGFYEFEDLSGKTIRIKADEVATVKPE 73
Cdd:NF033216  1 KKLLAALLAALALLALAGCSSPYVITTNDGRTIVTDGKPEYDKDTGLYEYEDADGKTQQINKDDVKTIKEL 71
DUF903 pfam06004
Bacterial protein of unknown function (DUF903); This family consists of several small ...
 24-72 2.75e-16

Bacterial protein of unknown function (DUF903); This family consists of several small bacterial proteins several of which are classified as putative lipoproteins. The function of this family is unknown.


Pssm-ID: 428717  Cd Length: 49  Bit Score: 65.26  E-value: 2.75e-16
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 764497026  24 PSVVTLQNGTQYITKDMPKTKSRDGFYEFEDLSGKTIRIKADEVATVKP 72
Cdd:pfam06004  1 PYVITTKDGRTIVTDGKPKYDKDTGMYEYEDEEGKEVQINKDDVKQIKE 49
 
Name Accession Description Interval E-value
lipo_YgdI_YgdR NF033216
YgdI/YgdR family lipoprotein; Members of this family are exclusively lipoproteins of small ...
 3-73 6.03e-29

YgdI/YgdR family lipoprotein; Members of this family are exclusively lipoproteins of small size, including YgdI and YgdR from E. coli K-12.


Pssm-ID: 468001  Cd Length: 71  Bit Score: 97.95  E-value: 6.03e-29
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 764497026  3 IKSLAFPVLASGFVLLAGCSTPSVVTLQNGTQYITKDMPKTKSRDGFYEFEDLSGKTIRIKADEVATVKPE 73
Cdd:NF033216  1 KKLLAALLAALALLALAGCSSPYVITTNDGRTIVTDGKPEYDKDTGLYEYEDADGKTQQINKDDVKTIKEL 71
DUF903 pfam06004
Bacterial protein of unknown function (DUF903); This family consists of several small ...
 24-72 2.75e-16

Bacterial protein of unknown function (DUF903); This family consists of several small bacterial proteins several of which are classified as putative lipoproteins. The function of this family is unknown.


Pssm-ID: 428717  Cd Length: 49  Bit Score: 65.26  E-value: 2.75e-16
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 764497026  24 PSVVTLQNGTQYITKDMPKTKSRDGFYEFEDLSGKTIRIKADEVATVKP 72
Cdd:pfam06004  1 PYVITTKDGRTIVTDGKPKYDKDTGMYEYEDEEGKEVQINKDDVKQIKE 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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