NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|764689851|ref|WP_044459550|]
View 

MULTISPECIES: ABC transporter permease [Rhizobium/Agrobacterium group]

Protein Classification

ABC transporter permease( domain architecture ID 11427312)

ABC transporter permease similar to ABC oligopeptide transporter permease proteins (OppB, AppB, and AmiC), the transmembrane subunits (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporters which generally bind type 2 PBPs

Gene Ontology:  GO:0055085
PubMed:  18535149|17723295
TCDB:  3.A.1

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 1-304 3.78e-111

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


:

Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 324.33  E-value: 3.78e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851   1 MLSFIRKRSFASLISLIGLIVMVFFLSRLT-GDPAALFLPVEASEELKQQFRALHGLNDPLMVQFLRYAGDVMTGDLGES 79
Cdd:COG0601    1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLpGDPAAALLGPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851  80 LRKARPALDVVLEAFVWTLWLAVITMSLVTTAAIIIGSLAAFRSGGFFDRVASSISLIGASVPDFWLAIVAIVVFSVNLA 159
Cdd:COG0601   81 FVYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKLG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851 160 WLPTSGTGSVL--------HWILPIAVLFVRPFGIIVQVVRGAMIGALSSAYVKTARAKGVKSGPIIFIHALRNAMLPVI 231
Cdd:COG0601  161 WLPVSGRVSPWedfldalrHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVV 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 764689851 232 TVIGDQAASLLNGAVVVETIFGFPGVGKLMIDSILQRDFNVVLAAILVTALAIFLMNLLIDIAYALLDPRIRH 304
Cdd:COG0601  241 TVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIRL 313
 
Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 1-304 3.78e-111

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 324.33  E-value: 3.78e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851   1 MLSFIRKRSFASLISLIGLIVMVFFLSRLT-GDPAALFLPVEASEELKQQFRALHGLNDPLMVQFLRYAGDVMTGDLGES 79
Cdd:COG0601    1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLpGDPAAALLGPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851  80 LRKARPALDVVLEAFVWTLWLAVITMSLVTTAAIIIGSLAAFRSGGFFDRVASSISLIGASVPDFWLAIVAIVVFSVNLA 159
Cdd:COG0601   81 FVYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKLG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851 160 WLPTSGTGSVL--------HWILPIAVLFVRPFGIIVQVVRGAMIGALSSAYVKTARAKGVKSGPIIFIHALRNAMLPVI 231
Cdd:COG0601  161 WLPVSGRVSPWedfldalrHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVV 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 764689851 232 TVIGDQAASLLNGAVVVETIFGFPGVGKLMIDSILQRDFNVVLAAILVTALAIFLMNLLIDIAYALLDPRIRH 304
Cdd:COG0601  241 TVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIRL 313
PRK15081 PRK15081
glutathione ABC transporter permease GsiC; Provisional
 1-304 6.30e-65

glutathione ABC transporter permease GsiC; Provisional


Pssm-ID: 185039 [Multi-domain]  Cd Length: 306  Bit Score: 206.10  E-value: 6.30e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851   1 MLSFIRKRSFASLISLIGLIVMVF-FLSRLTGDPAALFLPVEASEELKQQFRALHGLNDPLMVQFLRYAGDVMTGDLGES 79
Cdd:PRK15081   1 MLNYVIKRLLGLIPTLLIVAVLVFlFVHLLPGDPARLAAGPEADAQVVALVRQQLGLDQPLPHQFWHYISNALQGDFGTS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851  80 LRKARPALDVVLEAFVWTLWLAVITMSLVTTAAIIIGSLAAFRSGGFFDRVASSISLIGASVPDFWLAIVAIVVFSVNLA 159
Cdd:PRK15081  81 MVSRRPVSEEIASRFMPTLWLTITSMVWAVIFGMAIGIASAVWRNRWPDRLGMTLAVSGISFPAFALGMLLMQVFSVELG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851 160 WLPTSGTGSVLHWILPIAVLFVRPFGIIVQVVRGAMIGALSSAYVKTARAKGVKSGPIIFIHALRNAMLPVITVIGDQAA 239
Cdd:PRK15081 161 WLPTVGADSWQHYILPSLTLGAAVAAVMARFTRASFVEVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFG 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 764689851 240 SLLNGAVVVETIFGFPGVGKLMIDSILQRDFNVVLAAILVTALAIFLMNLLIDIAYALLDPRIRH 304
Cdd:PRK15081 241 FLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIRY 305
nickel_nikB TIGR02789
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ...
 1-303 3.21e-53

nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 131836 [Multi-domain]  Cd Length: 314  Bit Score: 176.49  E-value: 3.21e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851    1 MLSFIRKRsFASLISLIGLIVMVFF--LSRLTGDPAALFLPV---EASEELKQQFRALHGLNDPLMVQFLRYAGDVMTGD 75
Cdd:TIGR02789   1 MLNYILRR-LLLLIPVVLAASLLAFilIHLGPSDPAEDYLRLshiPPTDEAIADMRHSLGLDQPLYVQYFHWLWNALHLD 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851   76 LGESLRKARPALDVVLEAFVWTLWLAVITMSLVTTAAIIIGSLAAFRSGGFFDRVASSISLIGASVPDFWLAIVAIVVFS 155
Cdd:TIGR02789  80 FGISYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVSIPNFWLAFLLVWGFS 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851  156 VNLAWLPTSGTGSVLHWILPIAVLFVRPFGIIVQVVRGAMIGALSSAYVKTARAKGVKSGPIIFIHALRNAMLPVITVIG 235
Cdd:TIGR02789 160 VYLNLLPTNGAGTWQHLVLPAVTLALMSVSIYARLLRASMLDNMQERYVTYARVRGIKERWVIRRHILRNAILPMITALG 239

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 764689851  236 DQAASLLNGAVVVETIFGFPGVGKLMIDSILQRDFNVVLAAILVTALAIFLMNLLIDIAYALLDPRIR 303
Cdd:TIGR02789 240 MHIGELLGGTFVIENIFSWPGVGRYAISAIFNRDYPVIQCYTLLMGLLFVFCNLIVDLFQALLDPRIR 307
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 112-304 2.17e-23

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 94.29  E-value: 2.17e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851  112 AIIIGSLAAFRSGGFFDRVASSISLIGASVPDFWLAIVAIVVFsvnlawlptsGTGSVLHWILPIAVLFVRPFGIIVQVV 191
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA----------ILSILGHGILPAIILALLGWAGYARLI 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851  192 RGAMIGALSSAYVKTARAKGVKSGPIIFIHALRNAMLPVITVIGDQAASLLNGAVVVETIFGFPGVGKLMIDSILQRDFN 271
Cdd:pfam00528  71 RRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYP 150

                         170       180       190
                  ....*....|....*....|....*....|...
gi 764689851  272 VVLAAILVTALAIFLMNLLIDIAYALLDPRIRH 304
Cdd:pfam00528 151 EIQGPVLAAALILLLLNLLVDILQRLLDPRVRK 183
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 94-286 3.08e-12

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 64.22  E-value: 3.08e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851  94 FVWTLWLAVITMSLVTTAAIIIGSLAAfRSGGFFDRVASSISLIGASVPDFWLAIVAIVVFSVNLAWlptsgtGSVLHWI 173
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILA-RKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGW------GILPGLG 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851 174 LPIAVLFVRPFGIIVQVVRGAMIGALSSAYVKTARAKGVKSGPIIFIHALRNAMLPVITVIGDQAASLLNGAVVVETIFG 253
Cdd:cd06261   74 LPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGG 153

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 764689851 254 F----PGVGKLMIDSILQRDFNVVLAAILVTALAIFL 286
Cdd:cd06261  154 GeapgPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
 
Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 1-304 3.78e-111

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 324.33  E-value: 3.78e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851   1 MLSFIRKRSFASLISLIGLIVMVFFLSRLT-GDPAALFLPVEASEELKQQFRALHGLNDPLMVQFLRYAGDVMTGDLGES 79
Cdd:COG0601    1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLpGDPAAALLGPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851  80 LRKARPALDVVLEAFVWTLWLAVITMSLVTTAAIIIGSLAAFRSGGFFDRVASSISLIGASVPDFWLAIVAIVVFSVNLA 159
Cdd:COG0601   81 FVYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKLG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851 160 WLPTSGTGSVL--------HWILPIAVLFVRPFGIIVQVVRGAMIGALSSAYVKTARAKGVKSGPIIFIHALRNAMLPVI 231
Cdd:COG0601  161 WLPVSGRVSPWedfldalrHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVV 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 764689851 232 TVIGDQAASLLNGAVVVETIFGFPGVGKLMIDSILQRDFNVVLAAILVTALAIFLMNLLIDIAYALLDPRIRH 304
Cdd:COG0601  241 TVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIRL 313
PRK15081 PRK15081
glutathione ABC transporter permease GsiC; Provisional
 1-304 6.30e-65

glutathione ABC transporter permease GsiC; Provisional


Pssm-ID: 185039 [Multi-domain]  Cd Length: 306  Bit Score: 206.10  E-value: 6.30e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851   1 MLSFIRKRSFASLISLIGLIVMVF-FLSRLTGDPAALFLPVEASEELKQQFRALHGLNDPLMVQFLRYAGDVMTGDLGES 79
Cdd:PRK15081   1 MLNYVIKRLLGLIPTLLIVAVLVFlFVHLLPGDPARLAAGPEADAQVVALVRQQLGLDQPLPHQFWHYISNALQGDFGTS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851  80 LRKARPALDVVLEAFVWTLWLAVITMSLVTTAAIIIGSLAAFRSGGFFDRVASSISLIGASVPDFWLAIVAIVVFSVNLA 159
Cdd:PRK15081  81 MVSRRPVSEEIASRFMPTLWLTITSMVWAVIFGMAIGIASAVWRNRWPDRLGMTLAVSGISFPAFALGMLLMQVFSVELG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851 160 WLPTSGTGSVLHWILPIAVLFVRPFGIIVQVVRGAMIGALSSAYVKTARAKGVKSGPIIFIHALRNAMLPVITVIGDQAA 239
Cdd:PRK15081 161 WLPTVGADSWQHYILPSLTLGAAVAAVMARFTRASFVEVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFG 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 764689851 240 SLLNGAVVVETIFGFPGVGKLMIDSILQRDFNVVLAAILVTALAIFLMNLLIDIAYALLDPRIRH 304
Cdd:PRK15081 241 FLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIRY 305
PRK10914 PRK10914
dipeptide ABC transporter permease DppB;
1-304 8.47e-62

dipeptide ABC transporter permease DppB;


Pssm-ID: 182834 [Multi-domain]  Cd Length: 339  Bit Score: 199.27  E-value: 8.47e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851   1 MLSFIRKRSFASLISLIGLIVMVF-FLSRLTGDPAALFLPVEA-SEELKQQFRALHGLNDPLMVQFLRYAGDVMTGDLGE 78
Cdd:PRK10914   1 MLQFILRRLGLVIPTFIGITLLTFaFVHMIPGDPVMIMAGERGiSPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851  79 SLRKARPALDVVLEAFVWTLWLAVITMSLVTTAAIIIGSLAAFRSGGFFDRVASSISLIGASVPDFWLAIVAIVVFSVNL 158
Cdd:PRK10914  81 SLKSRIPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851 159 AWLPTSG--------------TG-----------------SVLHWILPIAVLFVRPFGIIVQVVRGAMIGALSSAYVKTA 207
Cdd:PRK10914 161 NLTPVSGrvsdmvflddsnplTGfmlidtaiwgedgnfidAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTA 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851 208 RAKGVKSGPIIFIHALRNAMLPVITVIGDQAASLLNGAVVVETIFGFPGVGKLMIDSILQRDFNVVLAAILVTALAIFLM 287
Cdd:PRK10914 241 RAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILV 320

                        330
                 ....*....|....*..
gi 764689851 288 NLLIDIAYALLDPRIRH 304
Cdd:PRK10914 321 NLLVDLLYGVVNPRIRH 337
PRK10352 PRK10352
nickel transporter permease NikB; Provisional
 1-304 1.04e-54

nickel transporter permease NikB; Provisional


Pssm-ID: 182400 [Multi-domain]  Cd Length: 314  Bit Score: 180.28  E-value: 1.04e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851   1 MLSFIRKRSFASLISLIGLIVMVFFLSRL-TGDPAALFL---PVEASEELKQQFRALHGLNDPLMVQFLRYAGDVMTGDL 76
Cdd:PRK10352   1 MLRYILRRLLLLIPMLLAASVIIFLMLRLgTGDPALDYLrlsNLPPTPEMLASTRTMLGLDQPLYVQYGTWLWKALHLDF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851  77 GESLRKARPALDVVLEAFVWTLWLAVITMSLVTTAAIIIGSLAAFRSGGFFDRVASSISLIGASVPDFWLAIVAIVVFSV 156
Cdd:PRK10352  81 GISFATQRPVLDDLLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851 157 NLAWLPTSGTGSVLHWILPIAVLFVRPFGIIVQVVRGAMIGALSSAYVKTARAKGVKSGPIIFIHALRNAMLPVITVIGD 236
Cdd:PRK10352 161 YLQWLPAMGYGGWQHIILPAVSIAFMSLAINARLLRASMLEVAGQRHVTWARLRGLSERQVERRHILRNASLPMITAVGM 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 764689851 237 QAASLLNGAVVVETIFGFPGVGKLMIDSILQRDFNVVLAAILVTALAIFLMNLLIDIAYALLDPRIRH 304
Cdd:PRK10352 241 HIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDPRIRR 308
nickel_nikB TIGR02789
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ...
 1-303 3.21e-53

nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 131836 [Multi-domain]  Cd Length: 314  Bit Score: 176.49  E-value: 3.21e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851    1 MLSFIRKRsFASLISLIGLIVMVFF--LSRLTGDPAALFLPV---EASEELKQQFRALHGLNDPLMVQFLRYAGDVMTGD 75
Cdd:TIGR02789   1 MLNYILRR-LLLLIPVVLAASLLAFilIHLGPSDPAEDYLRLshiPPTDEAIADMRHSLGLDQPLYVQYFHWLWNALHLD 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851   76 LGESLRKARPALDVVLEAFVWTLWLAVITMSLVTTAAIIIGSLAAFRSGGFFDRVASSISLIGASVPDFWLAIVAIVVFS 155
Cdd:TIGR02789  80 FGISYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVSIPNFWLAFLLVWGFS 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851  156 VNLAWLPTSGTGSVLHWILPIAVLFVRPFGIIVQVVRGAMIGALSSAYVKTARAKGVKSGPIIFIHALRNAMLPVITVIG 235
Cdd:TIGR02789 160 VYLNLLPTNGAGTWQHLVLPAVTLALMSVSIYARLLRASMLDNMQERYVTYARVRGIKERWVIRRHILRNAILPMITALG 239

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 764689851  236 DQAASLLNGAVVVETIFGFPGVGKLMIDSILQRDFNVVLAAILVTALAIFLMNLLIDIAYALLDPRIR 303
Cdd:TIGR02789 240 MHIGELLGGTFVIENIFSWPGVGRYAISAIFNRDYPVIQCYTLLMGLLFVFCNLIVDLFQALLDPRIR 307
oppB PRK09471
oligopeptide ABC transporter permease OppB;
1-304 7.43e-52

oligopeptide ABC transporter permease OppB;


Pssm-ID: 181886 [Multi-domain]  Cd Length: 306  Bit Score: 172.56  E-value: 7.43e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851   1 MLSFIRKRSFASLISLIGLIVMVFFLSRLTgdPAALFLPVEA-SEELKQQFRALHGLNDPLMVQFLRYAGDVMTGDLGES 79
Cdd:PRK09471   1 MLKFILRRCLEAIPTLFILITISFFMMRLA--PGSPFTGERTlPPEVMANIEAKYHLNDPIMTQYFSYLKQLAHGDFGPS 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851  80 LR-KARPALDVVLEAFVWTLWLAVITMSLVTTAAIIIGSLAAFRSGGFFDRVASSISLIGASVPDFWLAIVAIVVFSVNL 158
Cdd:PRK09471  79 FKyKDYSVNDLVASSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLIFAITL 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851 159 AWLPTSG--TGSVLHWILPIAVLFVRPFGIIVQVVRGAMIGALSSAYVKTARAKGVKSGPIIFIHALRNAMLPVITVIGD 236
Cdd:PRK09471 159 HWLPGGGwnGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSYMGP 238

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 764689851 237 QAASLLNGAVVVETIFGFPGVGKLMIDSILQRDFNVVLA-AILVTALAIfLMNLLIDIAYALLDPRIRH 304
Cdd:PRK09471 239 AFVGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSlTILVGALTI-LFNAIVDVLYAVIDPKIRY 306
SapB COG4168
ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];
1-304 1.14e-47

ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];


Pssm-ID: 443329 [Multi-domain]  Cd Length: 321  Bit Score: 161.93  E-value: 1.14e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851   1 MLSFIRKRSFASLISLIGLIVMVFFLSRLtgDPAAlflpveaseelkqqfrALHGLNdpLMVQFLRYAGDVMTGDLGESL 80
Cdd:COG4168    1 MLIYLLRRLNLLLITLLILSLISFSLLYR--DPLN----------------PLSDAS--LFSGYLFYLQNLLQGDFGISS 60

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851  81 RKARPALDVVLEAFVWTLWLAVITMSLVTTAAIIIGSLAAFRSGGFFDRVASSISLIGASVPDFWLAIVAIVVFSVNLAW 160
Cdd:COG4168   61 INGEPILEQLLTVFPATLELCFLAFLLALLIGIPLGILAGIYRGKWLDKLISSLSLLGFSIPVFWLALLLILFFSLNLGW 140

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851 161 LPTSG-----------TG-------------------SVL-HWILPIAVLFVRPFGIIVQVVRGAMIGALSSAYVKTARA 209
Cdd:COG4168  141 LPVSGrynllyeippvTGfalidawlsdspyrlkaiqSALqHLILPTLVLAVAPTTEVIRLTRQSTEEVMNQNYIKAAAT 220

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851 210 KGVKSGPIIFIHALRNAMLPVITVIGDQAASLLNGAVVVETIFGFPGVGKLMIDSILQRDFNVVLAAILVTALAIFLMNL 289
Cdd:COG4168  221 RGLSRFTIIRRHVLRNALPPIIPQLGLQFSTMLTLAMITEVVFSWPGIGRWLINAIRQQDYAAISAGVIVIGTFVIIVNI 300

                        330
                 ....*....|....*
gi 764689851 290 LIDIAYALLDPRIRH 304
Cdd:COG4168  301 LSDILGALLNPLKRK 315
YejB COG4174
ABC-type microcin C transport system, permease component YejB [Secondary metabolites ...
 38-302 2.35e-31

ABC-type microcin C transport system, permease component YejB [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443333 [Multi-domain]  Cd Length: 363  Bit Score: 119.91  E-value: 2.35e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851  38 LPVEASEELKQQFralhGLNDPLMVQFLRYAGDVMTGDLGESLRKARPALDVVLEAFVWTLWLAVITMSLVTTAAIIIGS 117
Cdd:COG4174   78 LDPEFIAELEKQY----GFDKPAHERFLLMLKNYLRFDFGESYFRDISVIDLILEKLPVSISLGLWSTLLTYLISIPLGI 153

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851 118 LAAFRSGGFFDRVASSISLIGASVPDFWLAIVAIVVFSVN--LAWLPTSG-----------TGSVL----HWILPIAVLF 180
Cdd:COG4174  154 RKAVRDGSRFDVWTSTVIIVGYAIPGFLFAILLIVLFAGGsyFDWFPLRGltsdnwdqlswWGKILdylwHLTLPVTAMV 233

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851 181 VRPFGIIVQVVRGAMIGALSSAYVKTARAKGVKSGPIIFIHALRNAMLPVITviGDQAA---SLLNGAVVVETIFGFPGV 257
Cdd:COG4174  234 IGGFATLTLLTKNSFLDEIRKQYVLTARAKGLSERRVLYGHVFRNAMLIVIA--GFPAAfigAFFTGSLLIETIFSLDGL 311

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 764689851 258 GKLMIDSILQRDFNVVLAAILVTALAIFLMNLLIDIAYALLDPRI 302
Cdd:COG4174  312 GLLGFEAVVNRDYPVVFGTLYIFTLIGLVLKLISDLTYVLVDPRI 356
PRK15110 PRK15110
peptide ABC transporter permease SapB;
64-300 2.75e-28

peptide ABC transporter permease SapB;


Pssm-ID: 185065 [Multi-domain]  Cd Length: 321  Bit Score: 110.93  E-value: 2.75e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851  64 FLRYAGDVMTGDLGESLRKARPALDVVLEAFVWTLWLAVITMSLVTTAAIIIGSLAAFRSGGFFDRVASSISLIGASVPD 143
Cdd:PRK15110  44 WVFWFNGLLHWDFGVSSINGQPISEQLKEVFPATMELCILAFGFALLVGIPVGIIAGVTRHKWQDNLISALALLGFSIPV 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851 144 FWLAIVAIVVFSVNLAWLPTSG-----------TGSVL--------------------HWILPIAVLFVRPFGIIVQVVR 192
Cdd:PRK15110 124 FWLALLLTLFFSLTLGWLPVSGrfdllyevkpvTGFALidawlsdspwrdemimsairHMILPVITLAVAPTTEVIRLMR 203

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851 193 GAMIGALSSAYVKTARAKGVKSGPIIFIHALRNAMLPVITVIGDQAASLLNGAVVVETIFGFPGVGKLMIDSILQRDFNV 272
Cdd:PRK15110 204 ISTIEVYDQNYVKAAATRGLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAIRQQDYAA 283

                        250       260
                 ....*....|....*....|....*...
gi 764689851 273 VLAAILVTALAIFLMNLLIDIAYALLDP 300
Cdd:PRK15110 284 ISAGVMVVGSLVIIVNVLSDILGAMANP 311
PRK15133 PRK15133
microcin C ABC transporter permease YejB; Provisional
 41-302 1.19e-27

microcin C ABC transporter permease YejB; Provisional


Pssm-ID: 185087 [Multi-domain]  Cd Length: 364  Bit Score: 110.22  E-value: 1.19e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851  41 EASEELKQQFralhGLNDPLMVQFLRYAGDVMTGDLGESLRKARPALDVVLEAFVWTLWLAVITMSLVTTAAIIIGSLAA 120
Cdd:PRK15133  84 EVIAEITHRY----GFDKPLHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKA 159

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851 121 FRSGGFFDRVASSISLIGASVPDFWLAIVAIVVFSVN--LAWLPTSG---------------TGSVLHWILPIAVLFVRP 183
Cdd:PRK15133 160 VRNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAGGsyFDLFPLRGlvsanfdslpwyqkiTDYLWHITLPVLATVIGG 239

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851 184 FGIIVQVVRGAMIGALSSAYVKTARAKGVKSGPIIFIHALRNAMLPVITVIGDQAASLL-NGAVVVETIFGFPGVGKLMI 262
Cdd:PRK15133 240 FAALTMLTKNSFLDEIRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPATFISMFfTGSLLIEVMFSLNGLGLLGY 319

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 764689851 263 DSILQRDFNVVLAAILVTALAIFLMNLLIDIAYALLDPRI 302
Cdd:PRK15133 320 EATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRI 359
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 112-304 2.17e-23

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 94.29  E-value: 2.17e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851  112 AIIIGSLAAFRSGGFFDRVASSISLIGASVPDFWLAIVAIVVFsvnlawlptsGTGSVLHWILPIAVLFVRPFGIIVQVV 191
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA----------ILSILGHGILPAIILALLGWAGYARLI 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851  192 RGAMIGALSSAYVKTARAKGVKSGPIIFIHALRNAMLPVITVIGDQAASLLNGAVVVETIFGFPGVGKLMIDSILQRDFN 271
Cdd:pfam00528  71 RRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYP 150

                         170       180       190
                  ....*....|....*....|....*....|...
gi 764689851  272 VVLAAILVTALAIFLMNLLIDIAYALLDPRIRH 304
Cdd:pfam00528 151 EIQGPVLAAALILLLLNLLVDILQRLLDPRVRK 183
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 94-286 3.08e-12

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 64.22  E-value: 3.08e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851  94 FVWTLWLAVITMSLVTTAAIIIGSLAAfRSGGFFDRVASSISLIGASVPDFWLAIVAIVVFSVNLAWlptsgtGSVLHWI 173
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILA-RKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGW------GILPGLG 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851 174 LPIAVLFVRPFGIIVQVVRGAMIGALSSAYVKTARAKGVKSGPIIFIHALRNAMLPVITVIGDQAASLLNGAVVVETIFG 253
Cdd:cd06261   74 LPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGG 153

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 764689851 254 F----PGVGKLMIDSILQRDFNVVLAAILVTALAIFL 286
Cdd:cd06261  154 GeapgPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 97-258 9.16e-09

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 55.12  E-value: 9.16e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851  97 TLWLAVITMSLVTTAAIIIGSLAAFRsGGFFDRVASSISLIGASVPDFWLAIVAIVVFSVNLAWLptsgtgsvlhwILPI 176
Cdd:COG1173   81 SLLVGLLAVLIALVIGVLLGLLAGYF-GGWVDAVLMRLVDVLLAFPSLLLAIALVAVLGPGLLNV-----------ILAL 148

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851 177 AVLFVRPFgiiVQVVRGAMIGALSSAYVKTARAKGVKSGPIIFIHALRNAMLPVITvigdQAASLLNGAVVVETIFGFPG 256
Cdd:COG1173  149 GLTGWPGY---ARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIV----QATLGIASAILAEAGLSFLG 221


                 ..
gi 764689851 257 VG 258
Cdd:COG1173  222 LG 223
PRK15021 PRK15021
microcin C ABC transporter permease; Provisional
 172-299 3.64e-04

microcin C ABC transporter permease; Provisional


Pssm-ID: 184982 [Multi-domain]  Cd Length: 341  Bit Score: 41.51  E-value: 3.64e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851 172 WILPIAVLFvrPFGIIVQVVRGAMIGALSSAYVKTARAKGVKSGPIIFIHALRNAMLPVITVIGDQAASLLNGAVVVETI 251
Cdd:PRK15021 205 WLLAITVLF--GWMSLVGVVRAEFLRTRNFDYIRAAQALGVSDRSIILRHMLPNAMVATLTFLPFILCSSITTLTSLDFL 282

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 764689851 252 -FGFPGVGKLMIDSILQRDFNVVLAAILVTAL--AIFLMNLLIDIAYALLD 299
Cdd:PRK15021 283 gFGLPLGSPSLGELLLQGKNNLQAPWLGITAFlsVAILLSLLIFIGEAVRD 333
BPD_transp_1_N pfam19300
Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal ...
 1-101 4.98e-04

Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal transmembrane domain of the Binding-protein-dependent transport system inner membrane component.


Pssm-ID: 437132 [Multi-domain]  Cd Length: 114  Bit Score: 39.13  E-value: 4.98e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851    1 MLSFIRKRSFASLISLIGLIVMVFFL-SRLTGDPAALFLPVEASEELKQQFRALHGLNDPLMVQFLRYAGDVMTGD---- 75
Cdd:pfam19300   1 MLRFLVRRTLGAVVILLIISAVTFFLfYAIPRDPARLACGKNCTPETLALIRHNLGLDKPIPVQYWHFLSGIFAGRdfga 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 764689851   76 --------LGESLRKARPALDVVLEAFVWTLWLA 101
Cdd:pfam19300  81 vghcpapcLGYSFANNEPVWDTIMDRFPTTLSLA 114
PRK09881 PRK09881
D,D-dipeptide ABC transporter permease;
108-301 7.63e-04

D,D-dipeptide ABC transporter permease;


Pssm-ID: 182131 [Multi-domain]  Cd Length: 296  Bit Score: 40.57  E-value: 7.63e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851 108 VTTAAIIIGSLAAFRSGGFFDRVASSIsligASVPDFWLAIVAIVVFSVNLAWLPTSGTGSVLhwilpiAVLFVR-PFgi 186
Cdd:PRK09881 103 VVAIAGMIGSLLGCLSGVLGGRADAII----MRIMDIMLSIPSLVLTMALAAALGPSLFNAML------AIAIVRiPF-- 170

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 764689851 187 IVQVVRGAMIGALSSAYVKTARAKGVKSGPIIFIHALRNAMLPVITvigdQAASLLNGAVVVETIFGFPGVGKLMIDS-- 264
Cdd:PRK09881 171 YVRLARGQALVVRQYTYVQAAKTFGASRWHLISWHILRNSLPPLIV----QASLDIGSAILMAATLGFIGLGAQQPSAew 246

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 764689851 265 --ILQRDFNVVL----------AAILVTALAiflMNLLIDIAYALLDPR 301
Cdd:PRK09881 247 gaMVANGRNYVLdqwwycafpgAAILLTAVG---FNLFGDGIRDLLDPK 292
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH