|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
11-333 |
1.08e-95 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 287.39 E-value: 1.08e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 11 LLKARTFIALLLVIAFFSVMVPNFLTASNLLIMTQHVAITGLLAIGMTLVILTGGIDLSVGAVAGICGMVAGALLTN-GL 89
Cdd:COG1172 16 LPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLVAlGL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 90 PLWngdviffnvpEVILCVAIFGVLVGLVNGAVITRFGVAPFICTLGMMYVARGSALLFNDGSTYPNLNgmealgnTGFA 169
Cdd:COG1172 96 PIL----------LAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLP-------DAFR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 170 TLGSGTLLGVYLPIWLMIGFLVLGYWLTTKTPLGRYIYAIGGNESAARLAGVPIVKAKIFVYAFSGLCAAFVGLIVASQL 249
Cdd:COG1172 159 ALGQGSLLGIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARL 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 250 QTAHPMTGNMFEMDAIGATVLGGTALAGGRGRVTGSIIGAFVIVFLADGMVMMGVSDFWQMVIKGVVIVTAVVVDQFQQK 329
Cdd:COG1172 239 GSAQPNAGSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRR 318
|
....
gi 765323961 330 LQSK 333
Cdd:COG1172 319 RRAR 322
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
1-328 |
3.18e-80 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 247.71 E-value: 3.18e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 1 MNQKYMIYMYLLKARTFIALLLVIAFFSVMVPNFLTASNLLIMTQHVAITGLLAIGMTLVILTGGIDLSVGAVAGICGMV 80
Cdd:PRK09512 6 SGRRYFTKAWLIEQKSLIALLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 81 AGALLTNGLPlwngdvIFFNVPEVILcvaiFGVLVGLVNGAVITRFGVAPFICTLGMMYVARGSALLFNDGStyPNLNGM 160
Cdd:PRK09512 86 AASIVGIEVN------ALVAVPAALA----LGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGS--PINTGF 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 161 EALGNTgFATLGSGTLLGVYLPIWLMIGFLVLGYWLTTKTPLGRYIYAIGGNESAARLAGVPIVKAKIFVYAFSGLCAAF 240
Cdd:PRK09512 154 TDNADL-FGWFGIGRPLGIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAAL 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 241 VGLIVASQLQTAHPMTGNMFEMDAIGATVLGGTALAGGRGRVTGSIIGAFVIVFLADGMVMMGVSDFWQMVIKGVVIVTA 320
Cdd:PRK09512 233 AGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLA 312
|
....*...
gi 765323961 321 VVVDQFQQ 328
Cdd:PRK09512 313 VLVDNKKQ 320
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
47-314 |
4.19e-77 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 237.69 E-value: 4.19e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 47 VAITGLLAIGMTLVILTGGIDLSVGAVAGICGMVAGALLTNGLplwngdvifFNVPEVILCVAIFGVLVGLVNGAVITRF 126
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAG---------LPIPLAILAALAVGALIGLLNGLLVAYL 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 127 GVAPFICTLGMMYVARGSALLFNDGSTYPNLNGmealgnTGFATLGSGTLLGVYLPIWLMIGFLVLGYWLTTKTPLGRYI 206
Cdd:cd06579 72 RIPPFIVTLGTMFILRGLALLITGGRPISGLPP------LFSFFLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYL 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 207 YAIGGNESAARLAGVPIVKAKIFVYAFSGLCAAFVGLIVASQLQTAHPMTGNMFEMDAIGATVLGGTALAGGRGRVTGSI 286
Cdd:cd06579 146 YAVGGNPEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTL 225
|
250 260
....*....|....*....|....*...
gi 765323961 287 IGAFVIVFLADGMVMMGVSDFWQMVIKG 314
Cdd:cd06579 226 LGALLLGVLNNGLNLLGVSSFWQQIVKG 253
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
17-314 |
4.89e-48 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 166.09 E-value: 4.89e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 17 FIALLLVIAFFSVMV------PNFLTasNLLIMTQHVAItglLAIGMTLVILTGGIDLSVGAVAGICGMVAGALLTN-GL 89
Cdd:NF040906 8 LIALVAIVVLFQILTggillrPLNVT--NLILQNSYILI---LAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNwGM 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 90 PLWNGdviffnvpeVILCVAIfGVLVGLVNGAVITRFGVAPFICTLGMMYVARGSALLFNDGST---------------Y 154
Cdd:NF040906 83 PWWLA---------VLLCLLV-GALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSigpfpdgfqkissgfL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 155 PNLNGMEALGNT-------------------------------------------GFATLGSGTLLGVY--LPIWLMI-G 188
Cdd:NF040906 153 PDLFGGTGLHLLtlllgvlaaaalvwsqlrgrrrrikyglevepmalfiaklvliAAAILFFTYLLASYrgLPNVLIIlG 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 189 FLVLGY-WLTTKTPLGRYIYAIGGNESAARLAGVPIVKAKIFVYAFSGLCAAFVGLIVASQLQTAHPMTGNMFEMDAIGA 267
Cdd:NF040906 233 VLILVYsFVTNRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAA 312
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 765323961 268 TVLGGTALAGGRGRVTGSIIGAFVIVFLADGMVMMGVSDFWQMVIKG 314
Cdd:NF040906 313 CFIGGASASGGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKG 359
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
47-314 |
2.69e-24 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 100.03 E-value: 2.69e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 47 VAITGLLAIGMTLVI-LTGGIDLSVGAVAGICGMVAGALLTNGLPlwngdviffNVPEVILCVAIFGVLVGLVNGAVITR 125
Cdd:pfam02653 9 ASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGP---------GLWLALPVGILVGAAVGLLIGILTLR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 126 FGVAPFICTLGMMYVARGSALLFNDGSTYPNlngMEALGNTGFATLGSGTLLGVYLPIWLMIGFLVLG-YWLTTKTPLGR 204
Cdd:pfam02653 80 LKINEVIITLLLNLAALGLALFLVTGILGGE---GGTSGITGPSGFPGAFLSFAFAFIFLLALLLVLAlWLLLYRTKFGR 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 205 YIYAIGGNESAARLAGVPIVKAKIFVYAFSGLCAAFVGLIVASQLQTAHPM-TGNMFEMDAIGATVLGGTalaggrGRVT 283
Cdd:pfam02653 157 ALRAVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSnFGVGLGLDAIAAVVLGGA------GSPI 230
|
250 260 270
....*....|....*....|....*....|..
gi 765323961 284 GSIIGAFVIVFLADGMVMM-GVSDFWQMVIKG 314
Cdd:pfam02653 231 GVVIGSLIIGLVQSLGLGAlGSPPELSLLVLG 262
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
11-333 |
1.08e-95 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 287.39 E-value: 1.08e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 11 LLKARTFIALLLVIAFFSVMVPNFLTASNLLIMTQHVAITGLLAIGMTLVILTGGIDLSVGAVAGICGMVAGALLTN-GL 89
Cdd:COG1172 16 LPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLVAlGL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 90 PLWngdviffnvpEVILCVAIFGVLVGLVNGAVITRFGVAPFICTLGMMYVARGSALLFNDGSTYPNLNgmealgnTGFA 169
Cdd:COG1172 96 PIL----------LAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLP-------DAFR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 170 TLGSGTLLGVYLPIWLMIGFLVLGYWLTTKTPLGRYIYAIGGNESAARLAGVPIVKAKIFVYAFSGLCAAFVGLIVASQL 249
Cdd:COG1172 159 ALGQGSLLGIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARL 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 250 QTAHPMTGNMFEMDAIGATVLGGTALAGGRGRVTGSIIGAFVIVFLADGMVMMGVSDFWQMVIKGVVIVTAVVVDQFQQK 329
Cdd:COG1172 239 GSAQPNAGSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRR 318
|
....
gi 765323961 330 LQSK 333
Cdd:COG1172 319 RRAR 322
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
1-328 |
3.18e-80 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 247.71 E-value: 3.18e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 1 MNQKYMIYMYLLKARTFIALLLVIAFFSVMVPNFLTASNLLIMTQHVAITGLLAIGMTLVILTGGIDLSVGAVAGICGMV 80
Cdd:PRK09512 6 SGRRYFTKAWLIEQKSLIALLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 81 AGALLTNGLPlwngdvIFFNVPEVILcvaiFGVLVGLVNGAVITRFGVAPFICTLGMMYVARGSALLFNDGStyPNLNGM 160
Cdd:PRK09512 86 AASIVGIEVN------ALVAVPAALA----LGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGS--PINTGF 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 161 EALGNTgFATLGSGTLLGVYLPIWLMIGFLVLGYWLTTKTPLGRYIYAIGGNESAARLAGVPIVKAKIFVYAFSGLCAAF 240
Cdd:PRK09512 154 TDNADL-FGWFGIGRPLGIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAAL 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 241 VGLIVASQLQTAHPMTGNMFEMDAIGATVLGGTALAGGRGRVTGSIIGAFVIVFLADGMVMMGVSDFWQMVIKGVVIVTA 320
Cdd:PRK09512 233 AGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLA 312
|
....*...
gi 765323961 321 VVVDQFQQ 328
Cdd:PRK09512 313 VLVDNKKQ 320
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
47-314 |
4.19e-77 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 237.69 E-value: 4.19e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 47 VAITGLLAIGMTLVILTGGIDLSVGAVAGICGMVAGALLTNGLplwngdvifFNVPEVILCVAIFGVLVGLVNGAVITRF 126
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAG---------LPIPLAILAALAVGALIGLLNGLLVAYL 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 127 GVAPFICTLGMMYVARGSALLFNDGSTYPNLNGmealgnTGFATLGSGTLLGVYLPIWLMIGFLVLGYWLTTKTPLGRYI 206
Cdd:cd06579 72 RIPPFIVTLGTMFILRGLALLITGGRPISGLPP------LFSFFLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYL 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 207 YAIGGNESAARLAGVPIVKAKIFVYAFSGLCAAFVGLIVASQLQTAHPMTGNMFEMDAIGATVLGGTALAGGRGRVTGSI 286
Cdd:cd06579 146 YAVGGNPEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTL 225
|
250 260
....*....|....*....|....*...
gi 765323961 287 IGAFVIVFLADGMVMMGVSDFWQMVIKG 314
Cdd:cd06579 226 LGALLLGVLNNGLNLLGVSSFWQQIVKG 253
|
|
| COG4158 |
COG4158 |
Predicted ABC-type sugar transport system, permease component [General function prediction ... |
20-329 |
6.18e-76 |
|
Predicted ABC-type sugar transport system, permease component [General function prediction only];
Pssm-ID: 443324 Cd Length: 334 Bit Score: 237.13 E-value: 6.18e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 20 LLLVIAFFSVMVPNFLTASNLLIMTQHVAITGLLAIGMTLVILTGGIDLSVGAVAGICGMVAgaLLTNGLPLWNgdviFF 99
Cdd:COG4158 36 LILLCIGFELLTPNFLTVQNLSNIARQASINIVLAAGMTFVILTGGIDLSVGSILAASAVVA--VLVSLLPGLG----LL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 100 NVPEVILCvaifGVLVGLVNGAVITRFGVAPFICTLGMMYVARGSALLFNDGSTYPNlngmealGNTGFATLGSGTLLGV 179
Cdd:COG4158 110 GIPAALLV----GLLFGLINGLLIAFLKLPPFIVTLGSLTALRGAARLLANGTTVFN-------PDLPFAWIGNGYLLGI 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 180 YLPIWLMIGFLVLGYWLTTKTPLGRYIYAIGGNESAARLAGVPIVKAKIFVYAFSGLCAAFVGLIVASQLQTAHPMT-GN 258
Cdd:COG4158 179 PWLVVIALAVVLASWFILRRTVLGVHIYAVGGNAQAARLTGIKVWRVLLFVYAVSGLLAGLGGVMSAARLYAANGLQlGQ 258
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 765323961 259 MFEMDAIGATVLGGTALAGGRGRVTGSIIGAFVIVFLADGMVMMGVSDFWQMVIKGVVIVTAVVVDQFQQK 329
Cdd:COG4158 259 GYELDAIAAVILGGTSFVGGIGSIWGTLIGALIIAVLNNGLILLGVSDFWQFIIKGLVIIIAVALDRYRQR 329
|
|
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
17-314 |
5.41e-70 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 223.84 E-value: 5.41e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 17 FIALLLVIAFFSVM-VPNFLTASNLLIMTQHVAITGLLAIGMTLVILTGGIDLSVGAVAGICGMVAGALLTN-GLPLWng 94
Cdd:COG4214 28 IIALVVIWIVFQILtGGTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLSVGSVSGFVGAVAAVLMVNwGLPWW-- 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 95 dviffnvPEVILCVAIfGVLVGLVNGAVITRFGVAPFICTLGMMYVARGSALLFNDGSTYPNLN-GMEALGNTGFATLGS 173
Cdd:COG4214 106 -------LAILAALLV-GALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGGTIAPFDpTFQAIGNGFLPDILG 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 174 GTLL--------------------------------------------------------GVYLPIWLMIGFLVLGYWLT 197
Cdd:COG4214 178 TLSWvlgavavaayvalqlrsrrrrrryglpveplwlfvlklallavlilgavyllnsyrGIPIVVLILLVLVVVYTFVL 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 198 TKTPLGRYIYAIGGNESAARLAGVPIVKAKIFVYAFSGLCAAFVGLIVASQLQTAHPMTGNMFEMDAIGATVLGGTALAG 277
Cdd:COG4214 258 TRTVFGRHIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGTGFELDAIAAAVIGGTSLFG 337
|
330 340 350
....*....|....*....|....*....|....*..
gi 765323961 278 GRGRVTGSIIGAFVIVFLADGMVMMGVSDFWQMVIKG 314
Cdd:COG4214 338 GVGTVYGAVIGALVMGSLNNGMSLLGVDSDWQQIVKG 374
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
17-329 |
1.11e-56 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 187.58 E-value: 1.11e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 17 FIALLLVIAFFsvmVPNFLTASNLLIMTQHVAITGLLAIGMTLVILTGGIDLSVGAVAGICGMVAGALLTNGLPLWNGdv 96
Cdd:PRK11285 36 FAVLFIACSLF---VPNFASFINMKGLGLAISMIGMVACTMLFCLASGDFDLSVASVVAFAGVVTAVVINATESLWLG-- 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 97 iffnvpevILCVAIFGVLVGLVNGAVITRFGVAPFICTLGMMYVARGSALLFNDGstypnlngmEALG--NTGFATLGSG 174
Cdd:PRK11285 111 --------VAAGLLLGAAVGLVNGFVIARLKINALITTLATMQIVRGLAYIISDG---------KAVGisDERFFALGYA 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 175 TLLGVYLPIWLMIGFLVLGYWLTTKTPLGRYIYAIGGNESAARLAGVPIVKAKIFVYAFSGLCAAFVGLIVASQLQTAHP 254
Cdd:PRK11285 174 NFFGVPAPIWLTVACFVVFGFLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSALAGVILASRMTSGQP 253
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 765323961 255 MTGNMFEMDAIGATVLGGTALAGGRGRVTGSIIGAFVIVFLADGMVMMGVSDFWQMVIKGVVIVTAVVVDQFQQK 329
Cdd:PRK11285 254 MTSIGFELIVISACVLGGVSLKGGIAKISGVVAGVLILGTVENAMNLLNISPFYQYVVRGLILLAAVLFDRYKQR 328
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
17-314 |
4.89e-48 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 166.09 E-value: 4.89e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 17 FIALLLVIAFFSVMV------PNFLTasNLLIMTQHVAItglLAIGMTLVILTGGIDLSVGAVAGICGMVAGALLTN-GL 89
Cdd:NF040906 8 LIALVAIVVLFQILTggillrPLNVT--NLILQNSYILI---LAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNwGM 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 90 PLWNGdviffnvpeVILCVAIfGVLVGLVNGAVITRFGVAPFICTLGMMYVARGSALLFNDGST---------------Y 154
Cdd:NF040906 83 PWWLA---------VLLCLLV-GALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSigpfpdgfqkissgfL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 155 PNLNGMEALGNT-------------------------------------------GFATLGSGTLLGVY--LPIWLMI-G 188
Cdd:NF040906 153 PDLFGGTGLHLLtlllgvlaaaalvwsqlrgrrrrikyglevepmalfiaklvliAAAILFFTYLLASYrgLPNVLIIlG 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 189 FLVLGY-WLTTKTPLGRYIYAIGGNESAARLAGVPIVKAKIFVYAFSGLCAAFVGLIVASQLQTAHPMTGNMFEMDAIGA 267
Cdd:NF040906 233 VLILVYsFVTNRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAA 312
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 765323961 268 TVLGGTALAGGRGRVTGSIIGAFVIVFLADGMVMMGVSDFWQMVIKG 314
Cdd:NF040906 313 CFIGGASASGGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKG 359
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
10-314 |
4.76e-44 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 154.85 E-value: 4.76e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 10 YLLKARTFIALLLVIAFFSVMVPNFLTASNLLIMTQHVAITGLLAIGMTLVILTGGIDLSVGAVAGICGMVAGALLTNgl 89
Cdd:PRK09478 12 YLKEGGIYVVLLVLLAIIIIQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQS-- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 90 pLWNGDVIFFNVPE-----VILCVAIFGVLVGLVNGAVITRFGVAPFICTLGMMYVARGSALLFNDGSTYPNLNGMEALG 164
Cdd:PRK09478 90 -MDNANKVFPELATmpialVILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTMIIVYGINSLYYDFVGASPISGFDSGF 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 165 NT---GFATLGSGTLlgVYLPIWLMIGFLVLgYWLTTKTPLGRYIYAIGGNESAARLAGVPIVKAKIFVYAFSGLCAAFV 241
Cdd:PRK09478 169 STfaqGFVALGSFRL--SYITFYALIAVAFV-WVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAFG 245
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 765323961 242 GLIVASQLQTAHPMTGNMFEMDAIGATVLGGTALAGGRGRVTGSIIGAFVIVFLADGMVMMGVSDFWQMVIKG 314
Cdd:PRK09478 246 GMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKG 318
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
17-314 |
2.39e-42 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 150.27 E-value: 2.39e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 17 FIALLLVIAFFSVMVPNFLTASNLLIMTQHVAITGLLAIGMTLVILTGGIDLSVGAVAGICGMVAGALLTNGlplwngdv 96
Cdd:PRK15432 14 LLAIVLLFVLLGFLDRQYLSLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVLVGMLLNAG-------- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 97 ifFNVPEVILCVAIFGVLVGLVNGAVITRFGVAPFICTLGMMYVARGSALLFNDGSTYPNLNgmealgnTGFATLGSGTL 176
Cdd:PRK15432 86 --YSLPVACLATLLLGLLAGFFNGVLVAWLRIPAIVATLGTLGLYRGIMLLWTGGKWIEGLP-------AELKQLSAPIL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 177 LGVYLPIWLMIGFLVLGYWLTTKTPLGRYIYAIGGNESAARLAGVPIVKAKIFVYAFSGLCAAFVGLIVASQLQTAHPMT 256
Cdd:PRK15432 157 LGISPIGWLTLILILAMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQT 236
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 765323961 257 GNMFEMDAIGATVLGGTALAGGRGRVTGSIIGAFVIVFLADGMVMMGVSDFWQMVIKG 314
Cdd:PRK15432 237 GTGLEMKAIAACVLGGISLLGGSGTIIGAVLGAYFLTQIDSVLVLLRIPAWWNDFIAG 294
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
13-326 |
9.40e-42 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 148.00 E-value: 9.40e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 13 KARTFIALLLVIAFFSVMVPN-FLTASNLLIMTQHVAITGLLAIGMTLVILTGGIDLSVGAVAGICGMVAGALLTNGlpl 91
Cdd:PRK09699 11 KYGTFFILAIIVAIFGSLSPEyFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLAG--- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 92 wngdviFFNVPEVILCVAIFGVLVGLVNGAVITRFGVAPFICTLGMMYVARGSALLFNDGSTYPNLNgmealgnTGFATL 171
Cdd:PRK09699 88 ------VDPFLAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFS-------FDFVNF 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 172 GSGTLLGVYLPIWLMIGFLVLGYWLTTKTPLGRYIYAIGGNESAARLAGVPIVKAKIFVYAFSGLCAAFVGLIVASQLQT 251
Cdd:PRK09699 155 FAASVIGIPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGA 234
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 765323961 252 AHPMTGNMFEMDAIGATVLGGTALAGGRGRVTGSIIGAFVIVFLADGMVMMGVSDFWQMVIKGVVIVTAVVVDQF 326
Cdd:PRK09699 235 AEPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALDRL 309
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
6-291 |
3.42e-38 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 138.55 E-value: 3.42e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 6 MIYMYLLKARTFIALLLVIAFFSVMVPNFLTASNLLIMTQHVAITGLLAIGMTLVILTGGIDLSVGAVAGICGMVAGALL 85
Cdd:PRK11618 1 MIKRNLPLMITIGVFVLGYLFCLVQFPGFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 86 TN-GLPLWngdviffnvpEVILCVAIFGVLVGLVNGAVITRFGVAPFICTLGMMYVARGSALLFNDGSTYPNLNGMEALG 164
Cdd:PRK11618 81 GDyGWSPL----------LAFPLVLVMGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVSFLVSEESIPINHPFYDTLS 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 165 NTGFATLGSGTLLGVYLpiwLMIGFLVLGYWLTTKTPLGRYIYAIGGNESAARLAGVPIVKAKIFVYAFSGLCAAFVGLI 244
Cdd:PRK11618 151 SLAWKLPGGGRLSAMAL---IMLAVVAIGIFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIV 227
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 765323961 245 VASQLQTAHPMTGNMFEMDAIGATVLGGTALAGGRGRVTGSIIGAFV 291
Cdd:PRK11618 228 FSLYTSAGYALAAVGVELDAIAAVVIGGTLLTGGVGTVLGTLFGVLI 274
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
20-304 |
4.92e-33 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 125.33 E-value: 4.92e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 20 LLLVIAFFSVMVPNFLTASNLLIMTQHVAITGLLAIGMTLVILTGGIDLSVGAVAGICGMVAGALLTNGLPLwngdviff 99
Cdd:PRK15038 15 LVIEILAFGLINPRMLDINVLLFSTSDFICIGIVALPLTMVIVSGGIDISFGSTIGLCAIALGVLFQSGVPM-------- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 100 nvPEVILCVAIFGVLVGLVNGAVITRFGVAPFICTLGMMYVARGSALLFndgSTYPNLNGMEALGN--TGFATLGSGTLL 177
Cdd:PRK15038 87 --PLAILLTLLLGALCGLINAGLIIYTGVNPLVITLGTLYLFGGSALLL---SGMAGATGYEGIGGfpMAFTDFANLDVL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 178 GVYLPIWLMIGFLVLGYWLTTKTPLGRYIYAIGGNESAARLAGVPIVKAKIFVYAFSGLCAAFVGLIVASQLQTAHPMTG 257
Cdd:PRK15038 162 GLPVPLIIFLICLLVFWLLMHRTHAGRNVFLIGQSPRVALYSAIPVNRTLCALYAMTGLASAIAAVLLVSYFGSARSDLG 241
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 765323961 258 NMFEMDAIGATVLGGTALAGGRGRVTGSIIGAFVIVFLADGMVMMGV 304
Cdd:PRK15038 242 ASFLMPAITAVVLGGANIYGGSGSIIGTALAVLLVGYLQQGLQMAGV 288
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
47-314 |
2.69e-24 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 100.03 E-value: 2.69e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 47 VAITGLLAIGMTLVI-LTGGIDLSVGAVAGICGMVAGALLTNGLPlwngdviffNVPEVILCVAIFGVLVGLVNGAVITR 125
Cdd:pfam02653 9 ASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGP---------GLWLALPVGILVGAAVGLLIGILTLR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 126 FGVAPFICTLGMMYVARGSALLFNDGSTYPNlngMEALGNTGFATLGSGTLLGVYLPIWLMIGFLVLG-YWLTTKTPLGR 204
Cdd:pfam02653 80 LKINEVIITLLLNLAALGLALFLVTGILGGE---GGTSGITGPSGFPGAFLSFAFAFIFLLALLLVLAlWLLLYRTKFGR 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 205 YIYAIGGNESAARLAGVPIVKAKIFVYAFSGLCAAFVGLIVASQLQTAHPM-TGNMFEMDAIGATVLGGTalaggrGRVT 283
Cdd:pfam02653 157 ALRAVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSnFGVGLGLDAIAAVVLGGA------GSPI 230
|
250 260 270
....*....|....*....|....*....|..
gi 765323961 284 GSIIGAFVIVFLADGMVMM-GVSDFWQMVIKG 314
Cdd:pfam02653 231 GVVIGSLIIGLVQSLGLGAlGSPPELSLLVLG 262
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
49-314 |
1.11e-17 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 81.55 E-value: 1.11e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 49 ITGLLAIGMTLVILTGGI-DLSVGAVAGICGMVAGALLTNGLPLWNgdviffnvpeVILCVAIFGVLVGLVNGAVITRFG 127
Cdd:cd06574 3 IYAILALGVYIVFRILGFpDLTVDGSFPLGAAVAAILIVAGYNPWL----------ALIAAILAGAAAGLVTGFLHTRLK 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 128 VAPFICTLGMMYVARGSALLFNDGSTYPNLNgmEALGNTGFATLGSGTLLGVYLPIWLMIGFLVLGYWLTTKTPLGRYIY 207
Cdd:cd06574 73 INGLLAGILIMIGLYSINLRIMGGPNIPLGT--RDTLLGLLLLFGISGTLSIPVVLLLIVLLVLFLVIWFLRTKLGLAMR 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 208 AIGGNESAARLAGVPIVKAKIFVYAFSGLCAAFVGLIVASQLQTAHPMTGNMFEMDAIGATVLGGTALAG--GRGRVTGS 285
Cdd:cd06574 151 ATGDNPDMARSLGINVDRTRILGLVISNALAALGGALYAQYQGFADVNMGIGTGVIGLAAVIIGGAIVGRrtIKASILGV 230
|
250 260
....*....|....*....|....*....
gi 765323961 286 IIGAFVIVFLADGMVMMGVSDFWQMVIKG 314
Cdd:cd06574 231 IIGAILYRIALALALGSGLIPSDLKLITA 259
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
47-312 |
8.87e-17 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 79.36 E-value: 8.87e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 47 VAITGLLAIGMTLVI-LTGGIDLSVGAVAGICGMVAGALLTN-GLPLWngdviffnvpEVILCVAIFGVLVGLVNGAVIT 124
Cdd:COG4177 11 ILIYAILALGLNLLLgYTGLLSLGHAAFFGIGAYAAALLTTHlGLPFW----------LALLLAGLVAALLGLLIGLPAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 125 RFGVAPF-ICTLGMMYVARgsaLLFNDGSTYPNlngmealGNTGFATLGSGTLLGVYLPI-----WLMIGFLVLGYWLT- 197
Cdd:COG4177 81 RLRGDYLaIATLAFAEIVR---LLALNLESLTG-------GADGLSGIPRPTLFGLDLGSplafyYLVLALLVLVLLLLr 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 198 --TKTPLGRYIYAIGGNESAARLAGVPIVKAKIFVYAFSGLCAAFVGLIVASQLQTAHPmtgNMFEMDAIGATVLGgtAL 275
Cdd:COG4177 151 rlVRSRFGRALRAIRENEIAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVGFVSP---ESFSFLLSIEILLM--VV 225
|
250 260 270
....*....|....*....|....*....|....*..
gi 765323961 276 AGGRGRVTGSIIGAFVIVFLADgmVMMGVSDFWQMVI 312
Cdd:COG4177 226 LGGLGSLLGPVLGAVLLVLLPE--LLRSLPEYRLLIF 260
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
47-312 |
6.30e-15 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 73.63 E-value: 6.30e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 47 VAITGLLAIGMTLVILTGG-IDLSVGAVAGICGMVAGALLTN-GLPLWNGdviffnvpevILCVAIFGVLVGLVNGAVIT 124
Cdd:cd06581 1 ILIYAILALGLNLLLGYAGqLSLGHAAFFGIGAYTAALLATRlGLPFWLA----------LLAAGLVAALVGLLLGLPAL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 125 RFGVAPF-ICTLGMMYVARgsALLFNDGSTYPNLNGMEALGNTGFATLGSGTLLGVYLPIWLMIGFLVLGYWLTTKTPLG 203
Cdd:cd06581 71 RLRGVYFaIATLAFAEIVR--LLALNWSSLTGGSNGLSGIPPPLLGGLLLSSPLAFYYLVLAVLLLVLLLLRRLVRSPFG 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 204 RYIYAIGGNESAARLAGVPIVKAKIFVYAFSGLCAAFVGLIVASQLQTAHPmtgNMFEMDAIGATVLGgtALAGGRGRVT 283
Cdd:cd06581 149 RALRAIRENEVAAEALGINVTRYKLLAFALSAALAGLAGALYAHYLGFVSP---ESFGFALSIELLLM--VVLGGLGSLL 223
|
250 260
....*....|....*....|....*....
gi 765323961 284 GSIIGAFVIVFLADgmVMMGVSDFWQMVI 312
Cdd:cd06581 224 GPVLGAALLVLLPE--LLRSLGPGLRLLV 250
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
48-292 |
8.98e-11 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 61.68 E-value: 8.98e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 48 AITGLLAIGMTLVI-LTGGIDLSVGAVAGICGMVAGALLTN-GLPLWngdvifFNVPEVILCVAIFGVLVGLVngaVITR 125
Cdd:cd06582 6 AIYALIALGLTLIFgVTGVINFAHGEFYMLGAYVAYTLLVAlGLPFW------LALLLALLVAALLGVLLERL---VLRP 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 126 FGVAP----FICTLGMMYVARGSALLFNDGSTYPNLNGMEALGNTGFATLGSGTLLGvylpIWLMIGFLVLGYWLTTKTP 201
Cdd:cd06582 77 LRGAPlltlLITFGGLLILLQGLLLIFGGDPRVPPPPLLSGSVELGGVTIPPYRLFI----IAVALVLLAALYLFLRRTR 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 202 LGRYIYAIGGNESAARLAGVPIVKAKIFVYAFSGLCAAFVGLIVASqLQTAHPMTGNMFEMDAIGATVLGGTalaggrGR 281
Cdd:cd06582 153 LGRAIRAVAQNPEAARLLGINVRRVFALTFALGAALAGLAGVLLAP-ITGVSPTMGLLLLLKAFAAVVLGGL------GS 225
|
250
....*....|.
gi 765323961 282 VTGSIIGAFVI 292
Cdd:cd06582 226 IPGAVVGGLLL 236
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
48-292 |
2.78e-10 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 60.46 E-value: 2.78e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 48 AITGLLAIGMTLV-ILTGGIDLSVGAVAGICGMVAGALLTN-GLPLWNGdviffnvpevILCVAIFGVLVGLVNGAVITR 125
Cdd:COG0559 16 SIYALIALGLTLIfGVMGVINFAHGEFVMLGAYVAYTLATLlGLPLWLA----------LLLAVLVAALLGVLLERLVIR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 126 F-----GVAPFICTLGMMYVARGSALLFNDGSTYPNLNGMEALGNTGFATLGSGTLLGVYLPIWLMIGFlvlgYWLTTKT 200
Cdd:COG0559 86 PlrgapPLALLLATIGLSLVLQGLVLLIFGADPRSFPALLSGSVELGGVSIPAYRLFIIVVALVLLAAL----WLFLRRT 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 201 PLGRYIYAIGGNESAARLAGVPIVKAKIFVYAFSGLCAAFVGLIVAsQLQTAHPMTGNMFEMDAIGATVLGGTalaggrG 280
Cdd:COG0559 162 RLGLAMRAVAQNREAARLMGINVDRVIALTFALGAALAGLAGVLLA-PIYSVSPTMGFLLGLKAFAAVVLGGL------G 234
|
250
....*....|..
gi 765323961 281 RVTGSIIGAFVI 292
Cdd:COG0559 235 SIPGAVVGGLLL 246
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
79-305 |
5.68e-08 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 52.83 E-value: 5.68e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 79 MVAGALLTNGLPLWNGDVIFFNVPEVILCVAIFGVLVGLVNGAVITRFGVAPFICTLGMMYVArgsallfndgstypnln 158
Cdd:cd06580 28 MLLGAFAAALVALYLGLPATGSLPLGLLAAALAGALWALLPALLKAKLGVNEVISGLMLNYIA----------------- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 159 gmealgntgfatlgsgTLLGVYLpIWLMIGFLVLGYWLTTKTPLGRYIYAIGGNESAARLAGVPIVKAKIFVYAFSGLCA 238
Cdd:cd06580 91 ----------------LGLTSYL-LLLALLLVILVWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALA 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 765323961 239 AFVG--LIVASQLQTAHPMTGNMfEMDAIGATVLggtalagGRGRVTGSIIGAFVIVFLADGMVMMGVS 305
Cdd:cd06580 154 GLAGayLVLGVQGRFTEGMSAGY-GFIAIAVALL-------GRWNPLGILLAALLFGALEAGGIALQRS 214
|
|
| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
73-244 |
5.11e-07 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 50.89 E-value: 5.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 73 VAGICGMVAGALLTnGLPLWngdvifFNVPEVILCVAIFGVLVGLVNGAVITRFGVAPFICTLGMMYVArgsALLFNDGS 152
Cdd:COG4603 95 LGALAAAAVGLALP-GLPGP------LHLPLALLAGALAGALWAAIPGLLKARFGVNEVITTLMLNYIA---LYLVNYLV 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765323961 153 TYP------NLNGMEALGNTG-FATLGSGTllGVYLPIWLMIGFLVLGYWLTTKTPLGRYIYAIGGNESAARLAGVPIVK 225
Cdd:COG4603 165 RGPlrdpgsGFPQTPPIPESArLPRLLPGT--RLHLGLLIALLAAVLVWVLLNRTTLGYELRAVGLNPRAARYAGINVKR 242
|
170
....*....|....*....
gi 765323961 226 AKIFVYAFSGLCAAFVGLI 244
Cdd:COG4603 243 LIVLAMLISGALAGLAGAV 261
|
|
| |
