|
Name |
Accession |
Description |
Interval |
E-value |
| SecA |
COG0653 |
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ... |
2-907 |
0e+00 |
|
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440418 [Multi-domain] Cd Length: 876 Bit Score: 1755.69 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 2 LGKLLTKVFGSRNDRTLKALGKIVNKINALEGEYEQLSNEQLKAKTQEFRDRLEKGETLDDIMAEAFATVREASKRVFEM 81
Cdd:COG0653 1 MGKLLKKIFGSRNDRELKRLRKIVDKINALEPEMEALSDEELRAKTDEFKERLANGETLDDLLPEAFAVVREASKRVLGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 82 RHFDVQLIGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDADTNRPLFEFLGMTVGVNVAGL 161
Cdd:COG0653 81 RHFDVQLIGGIVLHQGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGRLYRFLGLSVGVIVHGM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 162 GQLEKKAAYNSDITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYIKVNT 241
Cdd:COG0653 161 DPEERRAAYAADITYGTNNEFGFDYLRDNMVFSLEDMVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSTDLYYRINK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 242 LIPNLIRqdkedsddyvgEGDFSVDEKAKQVHMTERGQEKIELLLiqaGLlaegDSLYSAANISLLHHVNAALRAHTLFE 321
Cdd:COG0653 241 LVPRLKR-----------DGDYTVDEKARTVTLTEEGIEKVEKLL---GI----DNLYDPENIELVHHLNQALRAHALFK 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 322 RDVDYVVQDGEVIIVDEHTGRTMQGRRWSEGLHQAVEAKEGVKIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEF 401
Cdd:COG0653 303 RDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEF 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 402 QHIYGLDTVVIPTNRPMIRNDMADLVYLTAKEKYAAIIQDIKGCRERGQPVLVGTVSIEQSELLSNLLDREKIPHKVLNA 481
Cdd:COG0653 383 REIYGLDVVVIPTNRPMIRKDEPDLVYKTEEEKFNAVVEDIKERHEKGQPVLVGTTSIEKSELLSKLLKKEGIPHNVLNA 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 482 KFHEKEAEIVAQAGRSGAVTVATNMAGRGTDIVLGGSWKAEVEELEN----PTEEQIAKIRVDWQERHDAVVAAGGLHIL 557
Cdd:COG0653 463 KQHEREAEIVAQAGRPGAVTIATNMAGRGTDIVLGGNPEFLAAAELAdrglEWEEAIAKIKAEWQAEHEEVLEAGGLHVI 542
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 558 GTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDSLMRIFASDRVANMMKKLGMEEGEAIEHPWVSRAIENAQRKVEAR 637
Cdd:COG0653 543 GTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRIKGMMDKLGMEEGEPIEHKMVSKAIENAQKKVEGR 622
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 638 NFDIRKQLLEFDDVANDQRQVVYAQRNELMDAESIEDTIKTIQEDVITGVIDQYIPPQSVEELWDVPGLEQRLKQEFVLD 717
Cdd:COG0653 623 NFDIRKNLLEYDDVMNDQRKVIYEQRREILEGEDLSETILDMREDVIEDLVDEYIPEGSYPEQWDLEGLEEALKELFGLD 702
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 718 LPLQEWLDkEEDLHEETLRERIIESWLKAYEAKEQMVGPEVLRQFEKAVMLQTLDGLWKEHLAAMDHLRQGIHLRGYAQK 797
Cdd:COG0653 703 LPIEEWLD-EEGLDEEELRERLLEAADEAYEEKEEELGPEVMRELERVVLLQVLDRKWREHLDAMDHLRQGIGLRGYAQK 781
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 798 NPKQEYKRESFELFQQMLESLKHDVISILSKVQVQAQSDVDEMEArrreeeariQHQYQHATSEALNEAEhdaevAAHTP 877
Cdd:COG0653 782 DPLVEYKREAFELFEEMLDSIKEEVVRYLFRVQVRSEEEREEVEE---------ERRENHADPAGEEEEE-----APKQP 847
|
890 900 910
....*....|....*....|....*....|
gi 765521316 878 vVRDGEKVGRNDPCPCGSGKKYKQCHGKLS 907
Cdd:COG0653 848 -VRKGPKVGRNDPCPCGSGKKYKHCHGKLA 876
|
|
| PRK12904 |
PRK12904 |
preprotein translocase subunit SecA; Reviewed |
2-907 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237259 [Multi-domain] Cd Length: 830 Bit Score: 1670.62 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 2 LGKLLTKVFGSRNDRTLKALGKIVNKINALEGEYEQLSNEQLKAKTQEFRDRLEKGETLDDIMAEAFATVREASKRVFEM 81
Cdd:PRK12904 1 MLGLLKKIFGSRNDRELKRLRKIVDKINALEPEMEKLSDEELKAKTAEFKERLAKGETLDDLLPEAFAVVREASKRVLGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 82 RHFDVQLIGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDADTNRPLFEFLGMTVGVNVAGL 161
Cdd:PRK12904 81 RHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 162 GQLEKKAAYNSDITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYIKVNT 241
Cdd:PRK12904 161 SPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 242 LIPNLirqdkedsddyVGEGDFSVDEKAKQVHMTERGQEKIELLLIQagllaegDSLYSAANISLLHHVNAALRAHTLFE 321
Cdd:PRK12904 241 IVPTL-----------EKEGDYTVDEKSRTVGLTEEGIEKAEKLLGI-------ENLYDPENIALVHHLNQALRAHELFK 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 322 RDVDYVVQDGEVIIVDEHTGRTMQGRRWSEGLHQAVEAKEGVKIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEF 401
Cdd:PRK12904 303 RDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEF 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 402 QHIYGLDTVVIPTNRPMIRNDMADLVYLTAKEKYAAIIQDIKGCRERGQPVLVGTVSIEQSELLSNLLDREKIPHKVLNA 481
Cdd:PRK12904 383 REIYNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNA 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 482 KFHEKEAEIVAQAGRSGAVTVATNMAGRGTDIVLGGSWKAEVE-ELENPTEEQIAKIRVDWQERHDAVVAAGGLHILGTE 560
Cdd:PRK12904 463 KNHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAaLLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTE 542
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 561 RHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDSLMRIFASDRVANMMKKLGMEEGEAIEHPWVSRAIENAQRKVEARNFD 640
Cdd:PRK12904 543 RHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRVKGMMDRLGMKEGEAIEHKMVTRAIENAQKKVEGRNFD 622
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 641 IRKQLLEFDDVANDQRQVVYAQRNELMDAESIEDTIKTIQEDVITGVIDQYIPPQSVEELWDVPGLEQRLKQEFVLDLPL 720
Cdd:PRK12904 623 IRKQLLEYDDVMNDQRKVIYAQRNEILEGEDLSETILDMREDVIEDLVDAYIPPGSYEEDWDLEGLEEALKTDFGLELPI 702
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 721 QEWLdkEEDLHEETLRERIIESWLKAYEAKEQMVGPEVLRQFEKAVMLQTLDGLWKEHLAAMDHLRQGIHLRGYAQKNPK 800
Cdd:PRK12904 703 EEWL--EEGLDEEELRERILEAAEEAYEEKEEELGEEQMREFERVVMLQVLDTKWREHLAAMDHLRQGIGLRGYAQKDPL 780
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 801 QEYKRESFELFQQMLESLKHDVISILSKVQVqaqsdvdemearrreeeariqhqyqhatsealneaehdaevaahtpvvr 880
Cdd:PRK12904 781 QEYKREGFELFEEMLDSIKEEVVRTLMKVQI------------------------------------------------- 811
|
890 900
....*....|....*....|....*..
gi 765521316 881 dgekvgrnDPCPCGSGKKYKQCHGKLS 907
Cdd:PRK12904 812 --------DPCPCGSGKKYKHCHGRLA 830
|
|
| secA |
TIGR00963 |
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are ... |
28-818 |
0e+00 |
|
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. This model excludes SecA2 of the accessory secretory system. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273366 [Multi-domain] Cd Length: 742 Bit Score: 1172.03 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 28 INALEGEYEQLSNEQLKAKTQEFRDRLEK-GETLDDIMAEAFATVREASKRVFEMRHFDVQLIGGMVLDSNRIAEMRTGE 106
Cdd:TIGR00963 1 INALEEDYEKLSDEELRNKTNEFKDRLAKqGETLDDLLPEAFAVVREASKRVLGMRPFDVQLIGGIALHKGKIAEMKTGE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 107 GKTLTATLPAYLNALTGKGVHVITVNDYLARRDADTNRPLFEFLGMTVGVNVAGLGQLEKKAAYNSDITYGTNNEFGFDY 186
Cdd:TIGR00963 81 GKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 187 LRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYIKVNTlIPNLIRQDkedsddyvgeGDFSVD 266
Cdd:TIGR00963 161 LRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYVQANK-FAKALEKE----------VDYEVD 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 267 EKAKQVHMTERGQEKIELLLIQagllaegDSLYSAANISLLHHVNAALRAHTLFERDVDYVVQDGEVIIVDEHTGRTMQG 346
Cdd:TIGR00963 230 EKNRAVLLTEQGMKKAEDLLGV-------DNLYDLENSPLIHYINNALKAKELFQKDVDYIVRDGEVVIVDEFTGRIMEG 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 347 RRWSEGLHQAVEAKEGVKIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVIPTNRPMIRNDMADL 426
Cdd:TIGR00963 303 RRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFRKIYNLEVVVVPTNRPVIRKDRPDL 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 427 VYLTAKEKYAAIIQDIKGCRERGQPVLVGTVSIEQSELLSNLLDREKIPHKVLNAKFHEKEAEIVAQAGRSGAVTVATNM 506
Cdd:TIGR00963 383 VYKTEEEKWKAVVEEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAKNHEREAEIIAQAGRKGAVTIATNM 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 507 AGRGTDIVLggswkaeveelenpteeqiakirvdwqerhDAVVAAGGLHILGTERHESRRIDNQLRGRSGRQGDAGSSRF 586
Cdd:TIGR00963 463 AGRGTDIKL------------------------------EEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 512
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 587 YLSMEDSLMRIFASDRVANMMKKLGMEEGEAIEHPWVSRAIENAQRKVEARNFDIRKQLLEFDDVANDQRQVVYAQRNEL 666
Cdd:TIGR00963 513 FLSLEDNLMRIFGGDRLEGLMRRLGMDDDEPIESKMVSRALESAQKRVEGRNFDIRKQLLEYDDVLNKQREVIYAERRRV 592
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 667 MDAESIEDTIKTIQEDVITGVIDQYIPPQSVEELWDVPGLEQRLKQEFVLDLPLQEWLDkeEDLHEETLRERIIESWLKA 746
Cdd:TIGR00963 593 LESEDLSELILQMLESTLDRIVDAYINEEKLSEEWDLEGLIEKLKTLFLLDGDLTPEDL--ENLTSEDLKELLLEKIRAA 670
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 765521316 747 YEAKEQMVGPEVLRQFEKAVMLQTLDGLWKEHLAAMDHLRQGIHLRGYAQKNPKQEYKRESFELFQQMLESL 818
Cdd:TIGR00963 671 YDEKEEQLESERMREFERYVLLQSIDRKWKEHLDAMDLLREGIGLRSYGQKDPLIEYKNEGFNLFEEMLEDI 742
|
|
| SecA_DEAD |
smart00957 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
6-402 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the.
Pssm-ID: 214937 [Multi-domain] Cd Length: 380 Bit Score: 753.87 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 6 LTKVFGSRNDRTLKALGKIVNKINALEGEYEQLSNEQLKAKTQEFRDRLEKGETLDDIMAEAFATVREASKRVFEMRHFD 85
Cdd:smart00957 1 LKKLFGSKNDRELKRLRKIVDQINALEPEMEALSDEELRAKTAEFKERLAEGESLDDLLPEAFAVVREAAKRVLGMRHFD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 86 VQLIGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDADTNRPLFEFLGMTVGVNVAGLGQLE 165
Cdd:smart00957 81 VQLIGGIVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVIVSGMSPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 166 KKAAYNSDITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAED-SSELYIKVNTLIP 244
Cdd:smart00957 161 RRAAYAADITYGTNNEFGFDYLRDNMAFSKEDKVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDeSSDLYHRADKFVP 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 245 NLIRQDkedsddyvgegDFSVDEKAKQVHMTERGQEKIELLLIQagllaegDSLYSAANISLLHHVNAALRAHTLFERDV 324
Cdd:smart00957 241 RLKEDE-----------DYTVDEKSRTVELTEEGIEKAEKLLGI-------DNLYDPENIELLHHVNQALRAHYLFKRDV 302
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 765521316 325 DYVVQDGEVIIVDEHTGRTMQGRRWSEGLHQAVEAKEGVKIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQ 402
Cdd:smart00957 303 DYIVRDGEVVIVDEFTGRVMEGRRYSDGLHQAIEAKEGVEIQEENQTLATITFQNYFRMYKKLSGMTGTAKTEAEEFR 380
|
|
| SecA_DEAD |
pfam07517 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
6-401 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the pfam00270.
Pssm-ID: 462190 [Multi-domain] Cd Length: 379 Bit Score: 688.46 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 6 LTKVFGSRNDRTLKALGKIVNKINALEGEYEQLSNEQLKAKTQEFRDRLEKGETLDDIMAEAFATVREASKRVFEMRHFD 85
Cdd:pfam07517 1 LKKIFGSPNERDLKRLRKIVDQINALEEELKALSDEELRAKTDELRERLREGESLDDILPEAFALVREAAKRVLGMRHYD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 86 VQLIGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDADTNRPLFEFLGMTVGVNVAGLGQLE 165
Cdd:pfam07517 81 VQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVITSDMDPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 166 KKAAYNSDITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYIKVNtlipN 245
Cdd:pfam07517 161 RRAAYNADITYGTNNELGFDYLRDNMATSKEDKVQRGLNFAIVDEVDSILIDEARTPLIISGPSEDDSELYREAD----R 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 246 LIRQDKEDsddyvgeGDFSVDEKAKQVHMTERGQEKIELLLiqagllaEGDSLYSAANISLLHHVNAALRAHTLFERDVD 325
Cdd:pfam07517 237 LVKSLEED-------GDYEIDEKSKNVELTEKGIEKIEKLL-------GIDNLYDPENVELLHHINQALKAHHLFKRDVD 302
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 765521316 326 YVVQDGEVIIVDEHTGRTMQGRRWSEGLHQAVEAKEGVKIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEF 401
Cdd:pfam07517 303 YIVRDGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEITPESQTLASITYQNFFRLYPKLSGMTGTAKTEAEEF 378
|
|
| DEXDc_SecA |
cd17928 |
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the ... |
42-414 |
3.67e-132 |
|
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350686 [Multi-domain] Cd Length: 230 Bit Score: 395.36 E-value: 3.67e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 42 QLKAKTQEFRDRLEKGETLDDIMAEAFATVREASKRVFEMRHFDVQLIGGMVLDSNRIAEMRTGEGKTLTATLPAYLNAL 121
Cdd:cd17928 1 ELRAKTDELRERLAKGETLDDLLPEAFALVREAARRVLGMRPFDVQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 122 TGKGVHVITVNDYLARRDADTNRPLFEFLGMTVGVNVAGLGQLEKKAAYNSDITYGTNNEFGFDYLRDNMAFSPQERVQR 201
Cdd:cd17928 81 TGKGVHVVTVNDYLARRDAEWMGPLYEFLGLTVGVILSDMSPDERREAYAADITYGTNNELGFDYLRDNMVTSKEDLVQR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 202 PLHYALIDEVDSILIDEARTPLIISGaaedsselyikvntlipnlirqdkedsddyvgegdfsvdekakqvhmtergqek 281
Cdd:cd17928 161 GLNFAIVDEVDSILIDEARTPLIISG------------------------------------------------------ 186
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 282 iellliqagllaegdslysaanisllhhvnaalrahtlferdvdyvvqdgeviivdehtgrtmqgrrwseglhqaveake 361
Cdd:cd17928 --------------------------------------------------------------------------------
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 765521316 362 gvkiqnenqTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVIPT 414
Cdd:cd17928 187 ---------TLATITFQNYFRLYPKLAGMTGTAKTEAEEFREIYNLDVVVIPT 230
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SecA |
COG0653 |
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ... |
2-907 |
0e+00 |
|
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440418 [Multi-domain] Cd Length: 876 Bit Score: 1755.69 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 2 LGKLLTKVFGSRNDRTLKALGKIVNKINALEGEYEQLSNEQLKAKTQEFRDRLEKGETLDDIMAEAFATVREASKRVFEM 81
Cdd:COG0653 1 MGKLLKKIFGSRNDRELKRLRKIVDKINALEPEMEALSDEELRAKTDEFKERLANGETLDDLLPEAFAVVREASKRVLGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 82 RHFDVQLIGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDADTNRPLFEFLGMTVGVNVAGL 161
Cdd:COG0653 81 RHFDVQLIGGIVLHQGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGRLYRFLGLSVGVIVHGM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 162 GQLEKKAAYNSDITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYIKVNT 241
Cdd:COG0653 161 DPEERRAAYAADITYGTNNEFGFDYLRDNMVFSLEDMVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSTDLYYRINK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 242 LIPNLIRqdkedsddyvgEGDFSVDEKAKQVHMTERGQEKIELLLiqaGLlaegDSLYSAANISLLHHVNAALRAHTLFE 321
Cdd:COG0653 241 LVPRLKR-----------DGDYTVDEKARTVTLTEEGIEKVEKLL---GI----DNLYDPENIELVHHLNQALRAHALFK 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 322 RDVDYVVQDGEVIIVDEHTGRTMQGRRWSEGLHQAVEAKEGVKIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEF 401
Cdd:COG0653 303 RDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEF 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 402 QHIYGLDTVVIPTNRPMIRNDMADLVYLTAKEKYAAIIQDIKGCRERGQPVLVGTVSIEQSELLSNLLDREKIPHKVLNA 481
Cdd:COG0653 383 REIYGLDVVVIPTNRPMIRKDEPDLVYKTEEEKFNAVVEDIKERHEKGQPVLVGTTSIEKSELLSKLLKKEGIPHNVLNA 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 482 KFHEKEAEIVAQAGRSGAVTVATNMAGRGTDIVLGGSWKAEVEELEN----PTEEQIAKIRVDWQERHDAVVAAGGLHIL 557
Cdd:COG0653 463 KQHEREAEIVAQAGRPGAVTIATNMAGRGTDIVLGGNPEFLAAAELAdrglEWEEAIAKIKAEWQAEHEEVLEAGGLHVI 542
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 558 GTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDSLMRIFASDRVANMMKKLGMEEGEAIEHPWVSRAIENAQRKVEAR 637
Cdd:COG0653 543 GTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRIKGMMDKLGMEEGEPIEHKMVSKAIENAQKKVEGR 622
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 638 NFDIRKQLLEFDDVANDQRQVVYAQRNELMDAESIEDTIKTIQEDVITGVIDQYIPPQSVEELWDVPGLEQRLKQEFVLD 717
Cdd:COG0653 623 NFDIRKNLLEYDDVMNDQRKVIYEQRREILEGEDLSETILDMREDVIEDLVDEYIPEGSYPEQWDLEGLEEALKELFGLD 702
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 718 LPLQEWLDkEEDLHEETLRERIIESWLKAYEAKEQMVGPEVLRQFEKAVMLQTLDGLWKEHLAAMDHLRQGIHLRGYAQK 797
Cdd:COG0653 703 LPIEEWLD-EEGLDEEELRERLLEAADEAYEEKEEELGPEVMRELERVVLLQVLDRKWREHLDAMDHLRQGIGLRGYAQK 781
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 798 NPKQEYKRESFELFQQMLESLKHDVISILSKVQVQAQSDVDEMEArrreeeariQHQYQHATSEALNEAEhdaevAAHTP 877
Cdd:COG0653 782 DPLVEYKREAFELFEEMLDSIKEEVVRYLFRVQVRSEEEREEVEE---------ERRENHADPAGEEEEE-----APKQP 847
|
890 900 910
....*....|....*....|....*....|
gi 765521316 878 vVRDGEKVGRNDPCPCGSGKKYKQCHGKLS 907
Cdd:COG0653 848 -VRKGPKVGRNDPCPCGSGKKYKHCHGKLA 876
|
|
| PRK12904 |
PRK12904 |
preprotein translocase subunit SecA; Reviewed |
2-907 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237259 [Multi-domain] Cd Length: 830 Bit Score: 1670.62 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 2 LGKLLTKVFGSRNDRTLKALGKIVNKINALEGEYEQLSNEQLKAKTQEFRDRLEKGETLDDIMAEAFATVREASKRVFEM 81
Cdd:PRK12904 1 MLGLLKKIFGSRNDRELKRLRKIVDKINALEPEMEKLSDEELKAKTAEFKERLAKGETLDDLLPEAFAVVREASKRVLGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 82 RHFDVQLIGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDADTNRPLFEFLGMTVGVNVAGL 161
Cdd:PRK12904 81 RHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 162 GQLEKKAAYNSDITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYIKVNT 241
Cdd:PRK12904 161 SPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 242 LIPNLirqdkedsddyVGEGDFSVDEKAKQVHMTERGQEKIELLLIQagllaegDSLYSAANISLLHHVNAALRAHTLFE 321
Cdd:PRK12904 241 IVPTL-----------EKEGDYTVDEKSRTVGLTEEGIEKAEKLLGI-------ENLYDPENIALVHHLNQALRAHELFK 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 322 RDVDYVVQDGEVIIVDEHTGRTMQGRRWSEGLHQAVEAKEGVKIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEF 401
Cdd:PRK12904 303 RDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEF 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 402 QHIYGLDTVVIPTNRPMIRNDMADLVYLTAKEKYAAIIQDIKGCRERGQPVLVGTVSIEQSELLSNLLDREKIPHKVLNA 481
Cdd:PRK12904 383 REIYNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNA 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 482 KFHEKEAEIVAQAGRSGAVTVATNMAGRGTDIVLGGSWKAEVE-ELENPTEEQIAKIRVDWQERHDAVVAAGGLHILGTE 560
Cdd:PRK12904 463 KNHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAaLLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTE 542
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 561 RHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDSLMRIFASDRVANMMKKLGMEEGEAIEHPWVSRAIENAQRKVEARNFD 640
Cdd:PRK12904 543 RHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRVKGMMDRLGMKEGEAIEHKMVTRAIENAQKKVEGRNFD 622
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 641 IRKQLLEFDDVANDQRQVVYAQRNELMDAESIEDTIKTIQEDVITGVIDQYIPPQSVEELWDVPGLEQRLKQEFVLDLPL 720
Cdd:PRK12904 623 IRKQLLEYDDVMNDQRKVIYAQRNEILEGEDLSETILDMREDVIEDLVDAYIPPGSYEEDWDLEGLEEALKTDFGLELPI 702
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 721 QEWLdkEEDLHEETLRERIIESWLKAYEAKEQMVGPEVLRQFEKAVMLQTLDGLWKEHLAAMDHLRQGIHLRGYAQKNPK 800
Cdd:PRK12904 703 EEWL--EEGLDEEELRERILEAAEEAYEEKEEELGEEQMREFERVVMLQVLDTKWREHLAAMDHLRQGIGLRGYAQKDPL 780
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 801 QEYKRESFELFQQMLESLKHDVISILSKVQVqaqsdvdemearrreeeariqhqyqhatsealneaehdaevaahtpvvr 880
Cdd:PRK12904 781 QEYKREGFELFEEMLDSIKEEVVRTLMKVQI------------------------------------------------- 811
|
890 900
....*....|....*....|....*..
gi 765521316 881 dgekvgrnDPCPCGSGKKYKQCHGKLS 907
Cdd:PRK12904 812 --------DPCPCGSGKKYKHCHGRLA 830
|
|
| secA |
PRK12906 |
preprotein translocase subunit SecA; Reviewed |
4-835 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237260 [Multi-domain] Cd Length: 796 Bit Score: 1211.47 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 4 KLLTKVFGSRNdRTLKALGKIVNKINALEGEYEQLSNEQLKAKTQEFRDRLEKGETLDDIMAEAFATVREASKRVFEMRH 83
Cdd:PRK12906 3 NILKKWFDNDK-RELKRLEKIADKVNALEDEYEKLSDEQLQAKTPEFRDRIKDGESLDDLLPEAFAVAREGAKRVLGLRP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 84 FDVQLIGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDADTNRPLFEFLGMTVGVNVAGLGQ 163
Cdd:PRK12906 82 FDVQIIGGIVLHEGNIAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSMSP 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 164 LEKKAAYNSDITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYIKVNTLI 243
Cdd:PRK12906 162 DEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKATDLYIRADRFV 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 244 PNLIRQDKEDSDDYVGEGDFSVDEKAKQVHMTERGQEKIELLLiqagllaEGDSLYSAANISLLHHVNAALRAHTLFERD 323
Cdd:PRK12906 242 KTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLF-------GLDNLYDSENTALAHHIDQALRANYIMLKD 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 324 VDYVVQDGEVIIVDEHTGRTMQGRRWSEGLHQAVEAKEGVKIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQH 403
Cdd:PRK12906 315 IDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEEEFRE 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 404 IYGLDTVVIPTNRPMIRNDMADLVYLTAKEKYAAIIQDIKGCRERGQPVLVGTVSIEQSELLSNLLDREKIPHKVLNAKF 483
Cdd:PRK12906 395 IYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKN 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 484 HEKEAEIVAQAGRSGAVTVATNMAGRGTDIVLGGSwkaeVEELenpteeqiakirvdwqerhdavvaaGGLHILGTERHE 563
Cdd:PRK12906 475 HAKEAEIIMNAGQRGAVTIATNMAGRGTDIKLGPG----VKEL-------------------------GGLAVIGTERHE 525
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 564 SRRIDNQLRGRSGRQGDAGSSRFYLSMEDSLMRIFASDRVANMMKKLGME-EGEAIEHPWVSRAIENAQRKVEARNFDIR 642
Cdd:PRK12906 526 SRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRRFGSDRVKAFLDRLGMNdDDQVIESRMITRQVESAQKRVEGNNYDTR 605
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 643 KQLLEFDDVANDQRQVVYAQRNE-LMDAESIEDTIKTIQEDVITGVIDQYIPPQsvEELWDVpgleQRLKQEFVLDLPLQ 721
Cdd:PRK12906 606 KQLLQYDDVMREQREVIYKQRMQvINEDKDLKEVLMPMIKRTVDRQVQMYTQGD--KKDWDL----DALRDFIVSAMPDE 679
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 722 EWLDKEEDLHE--ETLRERIIESWLKAYEAKEQMVG-PEVLRQFEKAVMLQTLDGLWKEHLAAMDHLRQGIHLRGYAQKN 798
Cdd:PRK12906 680 ETFDFEDLKGKspEELKKRLLDIVEDNYAEKEKQLGdPTQMLEFEKVVILRVVDSHWTDHIDAMDQLRQSIGLRGYGQLN 759
|
810 820 830
....*....|....*....|....*....|....*..
gi 765521316 799 PKQEYKRESFELFQQMLESLKHDVISILSKVQVQAQS 835
Cdd:PRK12906 760 PLVEYQEEGYRMFEEMISNIDYDVTRLFMKAQIRQNI 796
|
|
| secA |
TIGR00963 |
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are ... |
28-818 |
0e+00 |
|
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. This model excludes SecA2 of the accessory secretory system. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273366 [Multi-domain] Cd Length: 742 Bit Score: 1172.03 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 28 INALEGEYEQLSNEQLKAKTQEFRDRLEK-GETLDDIMAEAFATVREASKRVFEMRHFDVQLIGGMVLDSNRIAEMRTGE 106
Cdd:TIGR00963 1 INALEEDYEKLSDEELRNKTNEFKDRLAKqGETLDDLLPEAFAVVREASKRVLGMRPFDVQLIGGIALHKGKIAEMKTGE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 107 GKTLTATLPAYLNALTGKGVHVITVNDYLARRDADTNRPLFEFLGMTVGVNVAGLGQLEKKAAYNSDITYGTNNEFGFDY 186
Cdd:TIGR00963 81 GKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 187 LRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYIKVNTlIPNLIRQDkedsddyvgeGDFSVD 266
Cdd:TIGR00963 161 LRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYVQANK-FAKALEKE----------VDYEVD 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 267 EKAKQVHMTERGQEKIELLLIQagllaegDSLYSAANISLLHHVNAALRAHTLFERDVDYVVQDGEVIIVDEHTGRTMQG 346
Cdd:TIGR00963 230 EKNRAVLLTEQGMKKAEDLLGV-------DNLYDLENSPLIHYINNALKAKELFQKDVDYIVRDGEVVIVDEFTGRIMEG 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 347 RRWSEGLHQAVEAKEGVKIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVIPTNRPMIRNDMADL 426
Cdd:TIGR00963 303 RRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFRKIYNLEVVVVPTNRPVIRKDRPDL 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 427 VYLTAKEKYAAIIQDIKGCRERGQPVLVGTVSIEQSELLSNLLDREKIPHKVLNAKFHEKEAEIVAQAGRSGAVTVATNM 506
Cdd:TIGR00963 383 VYKTEEEKWKAVVEEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAKNHEREAEIIAQAGRKGAVTIATNM 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 507 AGRGTDIVLggswkaeveelenpteeqiakirvdwqerhDAVVAAGGLHILGTERHESRRIDNQLRGRSGRQGDAGSSRF 586
Cdd:TIGR00963 463 AGRGTDIKL------------------------------EEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 512
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 587 YLSMEDSLMRIFASDRVANMMKKLGMEEGEAIEHPWVSRAIENAQRKVEARNFDIRKQLLEFDDVANDQRQVVYAQRNEL 666
Cdd:TIGR00963 513 FLSLEDNLMRIFGGDRLEGLMRRLGMDDDEPIESKMVSRALESAQKRVEGRNFDIRKQLLEYDDVLNKQREVIYAERRRV 592
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 667 MDAESIEDTIKTIQEDVITGVIDQYIPPQSVEELWDVPGLEQRLKQEFVLDLPLQEWLDkeEDLHEETLRERIIESWLKA 746
Cdd:TIGR00963 593 LESEDLSELILQMLESTLDRIVDAYINEEKLSEEWDLEGLIEKLKTLFLLDGDLTPEDL--ENLTSEDLKELLLEKIRAA 670
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 765521316 747 YEAKEQMVGPEVLRQFEKAVMLQTLDGLWKEHLAAMDHLRQGIHLRGYAQKNPKQEYKRESFELFQQMLESL 818
Cdd:TIGR00963 671 YDEKEEQLESERMREFERYVLLQSIDRKWKEHLDAMDLLREGIGLRSYGQKDPLIEYKNEGFNLFEEMLEDI 742
|
|
| PRK09200 |
PRK09200 |
preprotein translocase subunit SecA; Reviewed |
8-837 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 236408 [Multi-domain] Cd Length: 790 Bit Score: 952.84 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 8 KVFGSRNDRTLKALGKIVNKINALEGEYEQLSNEQLKAKTQEFRDRLEKGETLDDIMAEAFATVREASKRVFEMRHFDVQ 87
Cdd:PRK09200 4 KLLGDIDKRRLKKYRKIVKQINKLEGKMSSLSDEELRQKTIEFKERLASGKTLDDILPEAFAVVREAAKRVLGMRPYDVQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 88 LIGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDADTNRPLFEFLGMTVGVNVAGL-GQLEK 166
Cdd:PRK09200 84 LIGALVLHEGNIAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIdDASEK 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 167 KAAYNSDITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYIKVNTLIPNL 246
Cdd:PRK09200 164 KAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLYHIAAKFVKTL 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 247 IRQDkedsddyvgegDFSVDEKAKQVHMTERGQEKIELLLiqagllaEGDSLYSAANISLLHHVNAALRAHTLFERDVDY 326
Cdd:PRK09200 244 EEDV-----------DYEFDEEKKEVWLTDQGIEKAESYF-------GIDNLYSLEHQVLYRHIILALRAHVLFKRDVDY 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 327 VVQDGEVIIVDEHTGRTMQGRRWSEGLHQAVEAKEGVKIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHIYG 406
Cdd:PRK09200 306 IVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYN 385
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 407 LDTVVIPTNRPMIRNDMADLVYLTAKEKYAAIIQDIKGCRERGQPVLVGTVSIEQSELLSNLLDREKIPHKVLNAKFHEK 486
Cdd:PRK09200 386 MEVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAK 465
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 487 EAEIVAQAGRSGAVTVATNMAGRGTDIVLGgswkAEVEELenpteeqiakirvdwqerhdavvaaGGLHILGTERHESRR 566
Cdd:PRK09200 466 EAQIIAEAGQKGAVTVATNMAGRGTDIKLG----EGVHEL-------------------------GGLAVIGTERMESRR 516
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 567 IDNQLRGRSGRQGDAGSSRFYLSMEDSLMRIFASDRVANMMKKL---GMEEGEAIEHPWVSRAIENAQRKVEARNFDIRK 643
Cdd:PRK09200 517 VDLQLRGRSGRQGDPGSSQFFISLEDDLLKRFAPEELEKLKKKLktdAQRLTGLLFNRKVHKIVVKAQRISEGAGYSARE 596
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 644 QLLEFDDVANDQRQVVYAQRNELMDAE--SIEDTIKTIQEDVITGVIDQYIPPQSVEELWDVpgleQRLKQEFVLDLPLQ 721
Cdd:PRK09200 597 YALELDDVINIQRDVVYKERNRLLEEDdrDLIDIVILMIDVYLEAVAEEYLLEKSLLEEWIY----ENLSFQLNEILSNT 672
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 722 EWLDKEEDLHEEtlrERIIESWLKayEAKEQMVGPEVLRQFEKAVMLQTLDGLWKEHLAAMDHLRQGIHLRGYAQKNPKQ 801
Cdd:PRK09200 673 NFPDKKEVVQFL---LEEAEKQLK--EKRNKLPSATLYNQFLRKVALKAIDQNWVEQVDALQQLKEGIGLRQYGQRNPIR 747
|
810 820 830
....*....|....*....|....*....|....*...
gi 765521316 802 EYKRESFELFQQMLESLKHDVIS--ILSKVQVQAQSDV 837
Cdd:PRK09200 748 EYQKEALESFEYMYENIKKDMVRnlLLSLLVFDKEGEI 785
|
|
| secA |
PRK12901 |
preprotein translocase subunit SecA; Reviewed |
4-905 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237256 [Multi-domain] Cd Length: 1112 Bit Score: 951.77 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 4 KLLTKVFGSRNDRTLKALGKIVNKINALEGEYEQLSNEQLKAKTQEFR-------------------------------- 51
Cdd:PRK12901 3 EFLKKLFGDKSERDLKEIQPIVEKIKAEYPELEALSNDELRAKTDEFKqyikeavadidakieelkaeaiesldidered 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 52 -----DRLEKG------ETLDDIMAEAFATVREASKR------------------------------------------- 77
Cdd:PRK12901 83 iyaqiDKLEKEayeileKVLDEILPEAFAIVKETARRfaeneeievtatdfdrelaatkdfvtiegdkaiwknhwdaggn 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 78 --VFEMRHFDVQLIGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDADTNRPLFEFLGMTVG 155
Cdd:PRK12901 163 eiTWDMVHYDVQLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVD 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 156 V------NVAGlgqleKKAAYNSDITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAA 229
Cdd:PRK12901 243 CidkhqpNSEA-----RRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVLIDDARTPLIISGPV 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 230 EDSSE-LYIKVNTLIPNLIRQDKEDSDDYVGE-------GD--------------------------------------- 262
Cdd:PRK12901 318 PKGDDqEFEELKPRVERLVEAQRKLATQFLAEakkliaeGDkkegglallrayrglpknkalikflseegikallqkten 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 263 ------------------FSVDEKAKQVHMTERGQEKI-----------------ELLLI--QAGLLAE-----GDSLYS 300
Cdd:PRK12901 398 fymqdnnrempevdeelyFVIDEKNNSVELTDKGIDYItgndedpdffvlpdigtELAEIenEGGLDEEeeaekKEELFQ 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 301 --AANISLLHHVNAALRAHTLFERDVDYVVQDGEVIIVDEHTGRTMQGRRWSEGLHQAVEAKEGVKIQNENQTLASITFQ 378
Cdd:PRK12901 478 dySVKSERVHTLNQLLKAYTLFEKDDEYVVMDGKVKIVDEQTGRIMEGRRYSDGLHQAIEAKENVKIEAATQTFATITLQ 557
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 379 NYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVIPTNRPMIRNDMADLVYLTAKEKYAAIIQDIKGCRERGQPVLVGTVS 458
Cdd:PRK12901 558 NYFRMYHKLAGMTGTAETEAGEFWDIYKLDVVVIPTNRPIARKDKEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTS 637
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 459 IEQSELLSNLLDREKIPHKVLNAKFHEKEAEIVAQAGRSGAVTVATNMAGRGTDIVLGgswkaeveelenpteeqiakir 538
Cdd:PRK12901 638 VEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPGTVTIATNMAGRGTDIKLS---------------------- 695
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 539 vdwqerhDAVVAAGGLHILGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDSLMRIFASDRVANMMKKLGMEEGEAI 618
Cdd:PRK12901 696 -------PEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLMRLFGSERIAKVMDRMGLKEGEVI 768
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 619 EHPWVSRAIENAQRKVEARNFDIRKQLLEFDDVANDQRQVVYAQRNELMDAESIEDTIKTIQEDVITGVIDQYippqsvE 698
Cdd:PRK12901 769 QHSMISKSIERAQKKVEENNFGIRKRLLEYDDVMNSQREVIYKRRRHALMGERLGMDIANMIYDVCEAIVENN------K 842
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 699 ELWDVPGLEQRLKQEFVLDLPLQEwlDKEEDLHEETLRERIIESWLKAYEAKEQMV------------------------ 754
Cdd:PRK12901 843 VANDYKGFKFELIRTLAMESPITE--EEFNKLKKDELTDKLYDAALENYQRKMERIaeiafpvikqvyeeqgnmyerivv 920
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 755 ----------------------GPEVLRQFEKAVMLQTLDGLWKEHLAAMDHLRQGIHLRGYAQKNPKQEYKRESFELFQ 812
Cdd:PRK12901 921 pftdgkrtlnvvtnlkeayeteGKEIVKDFEKNITLHIIDEAWKEHLREMDELKQSVQNASYEQKDPLLIYKFESFELFK 1000
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 813 QMLESLKHDVISILSKVQVQAQsDVDEMEARRREEEARIQHQYQHATSEALNE---AEHDAEVAAHTPVVRDGEKVGRND 889
Cdd:PRK12901 1001 NMVDKVNREVISFLFKGEIPVQ-EAPEIREAAPERRLDPKYRTQKEEIQDSDQraaASRDTGAQVKETPVRVEKKIGRND 1079
|
1130 1140
....*....|....*....|.
gi 765521316 890 PCPC-----GSGKKYKQCHGK 905
Cdd:PRK12901 1080 PVPCqnvdgGSGKKYKFKHAE 1100
|
|
| SecA2_Bac_anthr |
TIGR04397 |
accessory Sec system translocase SecA2, Bacillus type; Members of this family always occur in ... |
8-828 |
0e+00 |
|
accessory Sec system translocase SecA2, Bacillus type; Members of this family always occur in genomes with the preprotein translocase SecA (TIGR00963) and closely resemble it, hence the designation SecA2. However, this appears to mark a different type of accessory Sec system SecA2 (TIGR03714) from the serine-rich glycoprotein type found in Staphylococcus and Streptococcus, and the actinobacterial SecA2 (TIGR04221). This type occurs in species including Bacillus anthracis, Geobacillus thermoglucosidasius, Solibacillus silvestris, etc. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 275190 [Multi-domain] Cd Length: 774 Bit Score: 916.81 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 8 KVFGSRNDRTLKALGKIVNKINALEGEYEQLSNEQLKAKTQEFRDRLEKGETLDDIMAEAFATVREASKRVFEMRHFDVQ 87
Cdd:TIGR04397 3 KLKGDSSARELKRYEKLVAQINELEPKMEKLSDEELRQKTITFKERLEDGKTVDDIKVEAFAVVREASKRVLGMRHYDVQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 88 LIGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDADTNRPLFEFLGMTVGVNVAGLGQLEKK 167
Cdd:TIGR04397 83 LIGGLVLLEGNIAEMPTGEGKTLVASLPSYLRALEGKGVHVITVNDYLARRDRELIGQIHEFLGLTVGLNVPMMEASEKK 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 168 AAYNSDITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYikvnTLIPNLI 247
Cdd:TIGR04397 163 EAYQADITYGVGTEFGFDYLRDNMVYSLSDKVQRPYHFAIIDEIDSVLIDEAKTPLIIAGKTGSSSELH----YICARII 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 248 RQDKEDSddyvgegDFSVDEKAKQVHMTERGQEKIELLLiqaGLlaegDSLYSAANISLLHHVNAALRAHTLFERDVDYV 327
Cdd:TIGR04397 239 KSFEETE-------DYEYDPETKAASLTEEGITKIERAF---GI----DNLYDLEHQTLYHYLIQALRAHVLFKRDVDYI 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 328 VQDGEVIIVDEHTGRTMQGRRWSEGLHQAVEAKEGVKIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHIYGL 407
Cdd:TIGR04397 305 VKDGKIELVDMFTGRIMEGRSLSDGLHQAIEAKEGLEITEENKTQASITIQNYFRMYPKLSGMTGTAKTEEKEFRETYGM 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 408 DTVVIPTNRPMIRNDMADLVYLTAKEKYAAIIQDIKGCRERGQPVLVGTVSIEQSELLSNLLDREKIPHKVLNAKFHEKE 487
Cdd:TIGR04397 385 DVVQIPTNRPRIRVDWPDRVFMTYEAKYKAVAKEVKKRHETGQPILIGTTSILQSETVAKYLDKEKIPYQLLNAKTVEQE 464
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 488 AEIVAQAGRSGAVTVATNMAGRGTDIVLGgswkAEVEELenpteeqiakirvdwqerhdavvaaGGLHILGTERHESRRI 567
Cdd:TIGR04397 465 ADLIALAGQKGQVTIATNMAGRGTDILLG----EGVHEL-------------------------GGLHVIGTERHESRRI 515
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 568 DNQLRGRSGRQGDAGSSRFYLSMEDSLMRIFASDRVANMMKKLGMEEGEAIEHPWVSRAIENAQRKVEARNFDIRKQLLE 647
Cdd:TIGR04397 516 DNQLRGRSGRQGDPGSSQFIISLEDDMFRRYAAEELEKWKKKLKTDETGEILNKDVHEFVDKVQRIIEGSHYSAREYNLK 595
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 648 FDDVANDQRQVVYAQRNELMDAESIEDTIKTIQEDVITGVIDQYIPPQSVEELWDVPGLEQRLkQEFVLDLPLQEwlDKE 727
Cdd:TIGR04397 596 LDDVINEQRNVIYQLRDKLLEEEDAISEVLKMIRSAVEQIIDQYCPEEVLPEEWDLERLTEEL-NRIFPVTFVTF--DKR 672
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 728 EDLHEETLreRIIESWLKAYEAK-EQMVGPEVLRQFEKAVMLQTLDGLWKEHLAAMDHLRQGIHLRGYAQKNPKQEYKRE 806
Cdd:TIGR04397 673 IADKEELK--DLVKDTYEQYIAAlEKLPENEEIQMRLKHVMLSVIDAHWTRHLDAMNLLKEGIGLRSYQQEDPMRLYQKE 750
|
810 820
....*....|....*....|..
gi 765521316 807 SFELFQQMLESLKHDVISILSK 828
Cdd:TIGR04397 751 GLELFEAMYQNIEREICTELAR 772
|
|
| secA |
CHL00122 |
preprotein translocase subunit SecA; Validated |
14-823 |
0e+00 |
|
preprotein translocase subunit SecA; Validated
Pssm-ID: 214371 [Multi-domain] Cd Length: 870 Bit Score: 910.91 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 14 NDRTLKALGKIVNKINALEGEYEQLSNEQLKAKTQEFRDRLEKGETLDDIMAEAFATVREASKRVFEMRHFDVQLIGGMV 93
Cdd:CHL00122 8 NKSKLNKYQTLVNQINLLEEELKNLTDTELRSKTNKLKKRLSNGQNLNKIIPESFALTREASFRTLGLRHFDVQLIGGLV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 94 LDSNRIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDADTNRPLFEFLGMTVGVNVAGLGQLEKKAAYNSD 173
Cdd:CHL00122 88 LNDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSEERKKNYLKD 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 174 ITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYIKVNTLIPNLIRQDked 253
Cdd:CHL00122 168 ITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQSKTNIDKYIVADELAKYLEKNV--- 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 254 sddyvgegDFSVDEKAKQVHMTERGQEKIELLLiqagllaEGDSLYSAANiSLLHHVNAALRAHTLFERDVDYVVQDGEV 333
Cdd:CHL00122 245 --------HYEVDEKNKNVILTEQGILFIEKIL-------KIEDLYSAND-PWIPYILNALKAKELFFKNVHYIVRNNEI 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 334 IIVDEHTGRTMQGRRWSEGLHQAVEAKEGVKIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVIP 413
Cdd:CHL00122 309 IIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLEVVCIP 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 414 TNRPMIRNDMADLVYLTAKEKYAAIIQDIKGCRERGQPVLVGTVSIEQSELLSNLLDREKIPHKVLNAK--FHEKEAEIV 491
Cdd:CHL00122 389 THRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKpeNVRRESEIV 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 492 AQAGRSGAVTVATNMAGRGTDIVLGG--SWKA------------------------------------------------ 521
Cdd:CHL00122 469 AQAGRKGSITIATNMAGRGTDIILGGnpEFKLkkelydlllsyksnekistisqnflnilnslkndlkflslsdfenlki 548
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 522 --EVEELENPTEEQIAKIRVDWQER-----------HDAVVAAGGLHILGTERHESRRIDNQLRGRSGRQGDAGSSRFYL 588
Cdd:CHL00122 549 lnEASEISIPKNSYQLSLRFLYNELlekykklqekeKKIVKKLGGLYVIGTERHESRRIDNQLRGRAGRQGDPGSSRFFL 628
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 589 SMEDSLMRIFASDRVANMMKKLGMEEgEAIEHPWVSRAIENAQRKVEARNFDIRKQLLEFDDVANDQRQVVYAQRNELMD 668
Cdd:CHL00122 629 SLEDNLLRIFGGDKIQNLMQTLNLDD-EPLESKLLSKSLDSAQKKVEEYYYDQRKQLFEYDQVLNKQRKAIYSERRKILE 707
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 669 AESIEDTIKTIQEDvitgVIDQYIPPQSVEELWDVPGLEQRLKQEFVLDLPLQEWLDKEEDLHEETLRERIIESWLKAYE 748
Cdd:CHL00122 708 SQSLRDWILAYGEQ----VIDDIITFLKSRKNPNNKFINLINKFKELLKLPLCFNKSDLNTLNSGELKKFLYQQFWISYD 783
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 765521316 749 AKE-QM--VGPEVLRQFEKAVMLQTLDGLWKEHLAAMDHLRQGIHLRGYAQKNPKQEYKRESFELFQQMLESLKHDVI 823
Cdd:CHL00122 784 LKElYLeqIGTGLMRELERSLLLQQIDKSWKEHLQKMSLLREAIGWRSYGQKDPLIEYKNEAFNLFINMINHIRHLVI 861
|
|
| secA |
PRK12903 |
preprotein translocase subunit SecA; Reviewed |
8-829 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237258 [Multi-domain] Cd Length: 925 Bit Score: 878.62 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 8 KVFGSRNdRTLKALGKIVNKINALEGEYEQLSNEQLKAKTQEFRDRLEKGETLDDIMAEAFATVREASKRVFEMRHFDVQ 87
Cdd:PRK12903 5 KLFFFKS-TEMRIAEKILKQINDLEPYYRNLTDEELANKTNEFKDRLKNGETLEDIRVEAFAVAREATKRVLGKRPYDVQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 88 LIGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDADTNRPLFEFLGMTVGVNVAGLGQLEKK 167
Cdd:PRK12903 84 IIGGIILDLGSVAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGINKANMDPNLKR 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 168 AAYNSDITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYIKVNTLIPNLI 247
Cdd:PRK12903 164 EAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQSNDSNLYLAADQFVRTLK 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 248 rqdkedsddyvgEGDFSVDEKAKQVHMTERGQEKiellliqAGLLAEGDSLYSAANISLLHHVNAALRAHTLFERDVDYV 327
Cdd:PRK12903 244 ------------EDDYKIDEETKAISLTEKGIKK-------ANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYI 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 328 VQDGEVIIVDEHTGRTMQGRRWSEGLHQAVEAKEGVKIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHIYGL 407
Cdd:PRK12903 305 VRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNM 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 408 DTVVIPTNRPMIRNDMADLVYLTAKEKYAAIIQDIKGCRERGQPVLVGTVSIEQSELLSNLLDREKIPHKVLNAKFHEKE 487
Cdd:PRK12903 385 RVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNARE 464
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 488 AEIVAQAGRSGAVTVATNMAGRGTDIVLGgswkAEVEELenpteeqiakirvdwqerhdavvaaGGLHILGTERHESRRI 567
Cdd:PRK12903 465 AEIIAKAGQKGAITIATNMAGRGTDIKLS----KEVLEL-------------------------GGLYVLGTDKAESRRI 515
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 568 DNQLRGRSGRQGDAGSSRFYLSMEDSLMRIFAS-DRVANMMKKLGmeeGEAIEHPWVSRAIENAQRKVEARNFDIRKQLL 646
Cdd:PRK12903 516 DNQLRGRSGRQGDVGESRFFISLDDQLFRRFSNfDKIKEAFKKLG---DDEIKSKFFSKALLNAQKKIEGFNFDTRKNVL 592
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 647 EFDDVANDQRQVVYAQRNELMDAESIEDTIKTIQEDVITGVIDQYIPPQSvEELWDVPGLEQRLKQEFVLDLPLQEWLDK 726
Cdd:PRK12903 593 DYDDVIRQQRDLIYAQRDLILIADDLSHVIEKMISRAVEQILKNSFIILK-NNTINYKELVEFLNDNLLRITHFKFSEKD 671
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 727 EEDLHEETLRERIIESWLKAYEAKEQM----VGPEVLRQFEKAVMLQTLDGLWKEHLAAMDHLRQGIHLRGYAQKNPKQE 802
Cdd:PRK12903 672 FENYHKEELAQYLIEALNEIYFKKRQVildkIALNTFFESERYIILSALDKYWQNHIDTMDKLRSGVNLVQYSQKNPYQV 751
|
810 820
....*....|....*....|....*..
gi 765521316 803 YKRESFELFQQMLESLKHDVISILSKV 829
Cdd:PRK12903 752 YTEEGTKKFNILLQEIAYDVIVSLFNN 778
|
|
| SecA_DEAD |
smart00957 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
6-402 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the.
Pssm-ID: 214937 [Multi-domain] Cd Length: 380 Bit Score: 753.87 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 6 LTKVFGSRNDRTLKALGKIVNKINALEGEYEQLSNEQLKAKTQEFRDRLEKGETLDDIMAEAFATVREASKRVFEMRHFD 85
Cdd:smart00957 1 LKKLFGSKNDRELKRLRKIVDQINALEPEMEALSDEELRAKTAEFKERLAEGESLDDLLPEAFAVVREAAKRVLGMRHFD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 86 VQLIGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDADTNRPLFEFLGMTVGVNVAGLGQLE 165
Cdd:smart00957 81 VQLIGGIVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVIVSGMSPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 166 KKAAYNSDITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAED-SSELYIKVNTLIP 244
Cdd:smart00957 161 RRAAYAADITYGTNNEFGFDYLRDNMAFSKEDKVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDeSSDLYHRADKFVP 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 245 NLIRQDkedsddyvgegDFSVDEKAKQVHMTERGQEKIELLLIQagllaegDSLYSAANISLLHHVNAALRAHTLFERDV 324
Cdd:smart00957 241 RLKEDE-----------DYTVDEKSRTVELTEEGIEKAEKLLGI-------DNLYDPENIELLHHVNQALRAHYLFKRDV 302
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 765521316 325 DYVVQDGEVIIVDEHTGRTMQGRRWSEGLHQAVEAKEGVKIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQ 402
Cdd:smart00957 303 DYIVRDGEVVIVDEFTGRVMEGRRYSDGLHQAIEAKEGVEIQEENQTLATITFQNYFRMYKKLSGMTGTAKTEAEEFR 380
|
|
| secA2 |
TIGR03714 |
accessory Sec system translocase SecA2; Members of this protein family are homologous to SecA ... |
14-819 |
0e+00 |
|
accessory Sec system translocase SecA2; Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 163426 [Multi-domain] Cd Length: 762 Bit Score: 734.15 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 14 NDRTLKALGKIVNKINALEGEYEQLSNEQLKAKTQEFRDRLEKGETLDDIMAEAFATVREASKRVFEMRHFDVQLIGGMV 93
Cdd:TIGR03714 2 NNLRLKKLRKILNKINALKGKMATLSDEELQAKTAEFKNRLVEGESLDDILPEAYAVVREADKRVLGMFPYDVQVLGAIV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 94 LDSNRIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDADTNRPLFEFLGMTVGVNVAG-----LGQLEKKA 168
Cdd:TIGR03714 82 LHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDdpdeeYDANEKRK 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 169 AYNSDITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYIKVNTLIPNLIR 248
Cdd:TIGR03714 162 IYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLKE 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 249 QDkedsddyvgegDFSVDEKAKQVHMTERGQEKIELLLiqaGLlaegDSLYSAANISLLHHVNAALRAHTLFERDVDYVV 328
Cdd:TIGR03714 242 DV-----------DYIFKKDKKEVWLTDKGIEKAEQYF---KI----DNLYSEEYFELVRHINLALRAHYLFKRNKDYVV 303
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 329 QDGEVIIVDEHTGRTMQGRRWSEGLHQAVEAKEGVKIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHIYGLD 408
Cdd:TIGR03714 304 TNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLS 383
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 409 TVVIPTNRPMIRNDMADLVYLTAKEKYAAIIQDIKGCRERGQPVLVGTVSIEQSELLSNLLDREKIPHKVLNAKFHEKEA 488
Cdd:TIGR03714 384 VVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEA 463
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 489 EIVAQAGRSGAVTVATNMAGRGTDIVLGgswkAEVEELenpteeqiakirvdwqerhdavvaaGGLHILGTERHESRRID 568
Cdd:TIGR03714 464 QIIAEAGQKGAVTVATSMAGRGTDIKLG----KGVAEL-------------------------GGLAVIGTERMENSRVD 514
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 569 NQLRGRSGRQGDAGSSRFYLSMEDSLMRIFASDRVANMMKKLGMEEG----EAIEHPWVSRAIENAQRKVEARNFDIRKQ 644
Cdd:TIGR03714 515 LQLRGRSGRQGDPGSSQFFVSLEDDLIKRWSPSWLKKYYKKYSVKDSklkpSALFKRRFRKIVEKAQRASEDKGESAREQ 594
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 645 LLEFDDVANDQRQVVYAQRNELMDAESIEDTIKtiqEDVITGVIDQYIPPQSVEelwdvpglEQRLKQEFVLD-LPLQ-E 722
Cdd:TIGR03714 595 TNEFEESLSIQRENIYAERNRLIEGSDFLDDDV---DQIIDDVFNMYAEEQDLS--------NKSLLKRFILEnLSYQfK 663
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 723 WLDKEEDLH-EETLRERIIESWLKAYEAKEQMVGPEVLR-QFEKAVMLQTLDGLWKEHLAAMDHLRQGIHLRGYAQKNPK 800
Cdd:TIGR03714 664 NDPDEFDLKnKEAIKDFLKEIADKELSEKKKVLNNDYLFnDFERLSILKAIDENWIEQVDYLQQLKTVVTNRQNGQRNPI 743
|
810
....*....|....*....
gi 765521316 801 QEYKRESFELFQQMLESLK 819
Cdd:TIGR03714 744 FEYHKEALESYEYMKKEIK 762
|
|
| SecA_DEAD |
pfam07517 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
6-401 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the pfam00270.
Pssm-ID: 462190 [Multi-domain] Cd Length: 379 Bit Score: 688.46 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 6 LTKVFGSRNDRTLKALGKIVNKINALEGEYEQLSNEQLKAKTQEFRDRLEKGETLDDIMAEAFATVREASKRVFEMRHFD 85
Cdd:pfam07517 1 LKKIFGSPNERDLKRLRKIVDQINALEEELKALSDEELRAKTDELRERLREGESLDDILPEAFALVREAAKRVLGMRHYD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 86 VQLIGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDADTNRPLFEFLGMTVGVNVAGLGQLE 165
Cdd:pfam07517 81 VQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVITSDMDPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 166 KKAAYNSDITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYIKVNtlipN 245
Cdd:pfam07517 161 RRAAYNADITYGTNNELGFDYLRDNMATSKEDKVQRGLNFAIVDEVDSILIDEARTPLIISGPSEDDSELYREAD----R 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 246 LIRQDKEDsddyvgeGDFSVDEKAKQVHMTERGQEKIELLLiqagllaEGDSLYSAANISLLHHVNAALRAHTLFERDVD 325
Cdd:pfam07517 237 LVKSLEED-------GDYEIDEKSKNVELTEKGIEKIEKLL-------GIDNLYDPENVELLHHINQALKAHHLFKRDVD 302
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 765521316 326 YVVQDGEVIIVDEHTGRTMQGRRWSEGLHQAVEAKEGVKIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEF 401
Cdd:pfam07517 303 YIVRDGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEITPESQTLASITYQNFFRLYPKLSGMTGTAKTEAEEF 378
|
|
| secA |
PRK12898 |
preprotein translocase subunit SecA; Reviewed |
1-665 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237253 [Multi-domain] Cd Length: 656 Bit Score: 649.76 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 1 MLGKLLTKVFGSRNDRTLKALGKIVNKINALEGEYEQLSNEQLKAKTQEFRDRLEKGETLDD-IMAEAFATVREASKRVF 79
Cdd:PRK12898 21 WLERVLGRLAGRVRGRAARRQRLLADRVLAAAEALAGLSEEALRARSLALRARLRARDGFRDaLLAEAFALVREASGRVL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 80 EMRHFDVQLIGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDADTNRPLFEFLGMTVGVNVA 159
Cdd:PRK12898 101 GQRHFDVQLMGGLALLSGRLAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVE 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 160 GLGQLEKKAAYNSDITYGTNNEFGFDYLRDNMAF-------------------SPQERVQRPLHYALIDEVDSILIDEAR 220
Cdd:PRK12898 181 DQSPDERRAAYGADITYCTNKELVFDYLRDRLALgqrasdarlaleslhgrssRSTQLLLRGLHFAIVDEADSVLIDEAR 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 221 TPLIISGAAEDSSELyikvntlipNLIRQDKEDSDDYVGEGDFSVDEKAKQVHMTERGQEKIELLLIQAGLLAEGDSLYS 300
Cdd:PRK12898 261 TPLIISAPAKEADEA---------EVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRRE 331
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 301 AAnisllhhVNAALRAHTLFERDVDYVVQDGEVIIVDEHTGRTMQGRRWSEGLHQAVEAKEGVKIQNENQTLASITFQNY 380
Cdd:PRK12898 332 EL-------VRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRF 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 381 FRQYEKLAGMTGTADTEAFEFQHIYGLDTVVIPTNRPMIRNDMADLVYLTAKEKYAAIIQDIKGCRERGQPVLVGTVSIE 460
Cdd:PRK12898 405 FRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVA 484
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 461 QSELLSNLLDREKIPHKVLNAKFHEKEAEIVAQAGRSGAVTVATNMAGRGTDIVLGgswkaeveelenpteeqiakirvd 540
Cdd:PRK12898 485 ASERLSALLREAGLPHQVLNAKQDAEEAAIVARAGQRGRITVATNMAGRGTDIKLE------------------------ 540
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 541 wqerhDAVVAAGGLHILGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDSLMRIFASDRV--ANMMKKLGMEEGEAI 618
Cdd:PRK12898 541 -----PGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDLLQSFLGSRGlaIRRMELLGPRGGRAL 615
|
650 660 670 680
....*....|....*....|....*....|....*....|....*..
gi 765521316 619 EHPWVSRaienAQRKVEARNFDIRKQLLEFDDvaNDQRQVVYAQRNE 665
Cdd:PRK12898 616 GALLLRR----AQRRAERLHARARRALLHADE--QLDKLLAFAGRGE 656
|
|
| SecA2_Mycobac |
TIGR04221 |
accessory Sec system translocase SecA2, Actinobacterial type; Members of this family are the ... |
8-816 |
0e+00 |
|
accessory Sec system translocase SecA2, Actinobacterial type; Members of this family are the SecA2 subunit of the Mycobacterial type of accessory secretory system. This family is quite different SecA2 of the Staph/Strep type (TIGR03714).
Pssm-ID: 275062 [Multi-domain] Cd Length: 762 Bit Score: 548.27 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 8 KVFGSRNDRTLKALGKIVNKINALEGEYEQLSNEQLkakTQEFRDRLEKGETLDdiMAEAFATVREASKRVFEMRHFDVQ 87
Cdd:TIGR04221 7 KALGSSTERNQKRSLAIVPAAASRMKELSALDDEEL---TKAARDLVLSGEAAD--AAQFLAILREAAERTLGMRPFDVQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 88 LIGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDADTNRPLFEFLGMTVGVNVAGLGQLEKK 167
Cdd:TIGR04221 82 LLGALRLLAGDVIEMATGEGKTLAGAMAATGFALLGKRVHVVTVNDYLARRDAEWMGPLVDFFGLTVGWVTEDSTPDERR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 168 AAYNSDITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYikvntLIPNLI 247
Cdd:TIGR04221 162 AAYACDVTYASVNEIGFDVLRDQLVTDRADLVQPAADVALIDEADSVLVDEALVPLVLAGNEPGEAPRG-----RITDLV 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 248 RQDKEDSDdyvgegdFSVDEKAKQVHMTERGQEKIELLLiqagllaEGDSLYSAANI-SLLHHVNAALRAHTLFERDVDY 326
Cdd:TIGR04221 237 RRLREDKH-------YTVDEDGRNVHLTEDGARAVEAEL-------GIDDLYSEEHVgTTLVQVNVALHAHALLIRDVHY 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 327 VVQDGEVIIVDEHTGRTMQGRRWSEGLHQAVEAKEGVKIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHIYG 406
Cdd:TIGR04221 303 IVRDGKVALIDASRGRVAQLQRWPDGLQAAVEAKEGLEVTEGGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYD 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 407 LDTVVIPTNRPMIRNDMADLVYLTAKEKYAAIIQDIKGCRERGQPVLVGTVSIEQSELLSNLLDREKIPHKVLNAKFHEK 486
Cdd:TIGR04221 383 LGVSVIPPNTPNIRFDEADRVYATAAEKNDAIVEEIAEVHKTGQPVLVGTQDVAESEELAEALLEAGVPCNVLNAKNDAE 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 487 EAEIVAQAGRSGAVTVATNMAGRGTDIVLGGSWKAEveelenpteeqiakirvdwqerHDAVVAAGGLHILGTERHESRR 566
Cdd:TIGR04221 463 EAAIIAEAGDIGAVTVSTQMAGRGTDIRLGGSDEAD----------------------HDRVAELGGLHVIGTGRHRTAR 520
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 567 IDNQLRGRSGRQGDAGSSRFYLSMEDSLM-RIFASDRVanmmkKLGMEEGEAIEHPWVSRAIENAQRKVEARNFDIRKQL 645
Cdd:TIGR04221 521 LDNQLRGRAGRQGDPGSSVFFVSLEDDVVaVGGAGETV-----PAQPAEDGRIESPRVQDFVDHAQRVAEGQLLEIHANT 595
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 646 LEFDDVANDQRQVVYAQRNELMDAEsiedtiktiqedvitgvidqyippqsveelwdvpgleqrlkqefvldlplQEWLD 725
Cdd:TIGR04221 596 WRYNQLIAQQRDIIDERRETLLDTD--------------------------------------------------TAWQE 625
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 726 keedlheetLRERIIEswlKAYEAKEQmVGPEVLRQFEKAVMLQTLDGLWKEHLAAMDHLRQGIHLRGYAQKNPKQEYKR 805
Cdd:TIGR04221 626 ---------LSERAAD---RAAELKKE-VSEDALERAAREIMLYHLDRGWAEHLAYLDDVRESIHLRALGRETPLDEFHR 692
|
810
....*....|.
gi 765521316 806 ESFELFQQMLE 816
Cdd:TIGR04221 693 MAVRAFKELAQ 703
|
|
| DEXDc_SecA |
cd17928 |
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the ... |
42-414 |
3.67e-132 |
|
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350686 [Multi-domain] Cd Length: 230 Bit Score: 395.36 E-value: 3.67e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 42 QLKAKTQEFRDRLEKGETLDDIMAEAFATVREASKRVFEMRHFDVQLIGGMVLDSNRIAEMRTGEGKTLTATLPAYLNAL 121
Cdd:cd17928 1 ELRAKTDELRERLAKGETLDDLLPEAFALVREAARRVLGMRPFDVQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 122 TGKGVHVITVNDYLARRDADTNRPLFEFLGMTVGVNVAGLGQLEKKAAYNSDITYGTNNEFGFDYLRDNMAFSPQERVQR 201
Cdd:cd17928 81 TGKGVHVVTVNDYLARRDAEWMGPLYEFLGLTVGVILSDMSPDERREAYAADITYGTNNELGFDYLRDNMVTSKEDLVQR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 202 PLHYALIDEVDSILIDEARTPLIISGaaedsselyikvntlipnlirqdkedsddyvgegdfsvdekakqvhmtergqek 281
Cdd:cd17928 161 GLNFAIVDEVDSILIDEARTPLIISG------------------------------------------------------ 186
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 282 iellliqagllaegdslysaanisllhhvnaalrahtlferdvdyvvqdgeviivdehtgrtmqgrrwseglhqaveake 361
Cdd:cd17928 --------------------------------------------------------------------------------
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 765521316 362 gvkiqnenqTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVIPT 414
Cdd:cd17928 187 ---------TLATITFQNYFRLYPKLAGMTGTAKTEAEEFREIYNLDVVVIPT 230
|
|
| SecA_SW |
pfam07516 |
SecA Wing and Scaffold domain; SecA protein binds to the plasma membrane where it interacts ... |
617-830 |
4.54e-109 |
|
SecA Wing and Scaffold domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This family is composed of two C-terminal alpha helical subdomains: the wing and scaffold subdomains.
Pssm-ID: 462189 [Multi-domain] Cd Length: 213 Bit Score: 334.46 E-value: 4.54e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 617 AIEHPWVSRAIENAQRKVEARNFDIRKQLLEFDDVANDQRQVVYAQRNELMDAESIEDTIKTIQEDVITGVIDQYIPPQS 696
Cdd:pfam07516 1 PIEHKMVSKAIENAQKKVEGRNFDIRKNLLEYDDVMNQQREVIYAQRREILEGEDLKEDILEMIEDVVDDIVDEYIPPEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 697 VEELWDVPGLEQRLKQEFVLDLPLQEWLDkEEDLHEETLRERIIESWLKAYEAKEQMVGPEVLRQFEKAVMLQTLDGLWK 776
Cdd:pfam07516 81 SPEEWDLEGLKEALNEIFGLELPISEWEE-EEDLDKEELKERLLEAAEEAYEEKEEEIGPELMRELERVVLLQVIDSKWK 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 765521316 777 EHLAAMDHLRQGIHLRGYAQKNPKQEYKRESFELFQQMLESLKHDVISILSKVQ 830
Cdd:pfam07516 160 EHLDAMDQLRQGIGLRAYGQKDPLVEYKREGFELFEEMLDAIREEVVRYLFRVQ 213
|
|
| SF2_C_secA |
cd18803 |
C-terminal helicase domain of the protein translocase subunit secA; SecA is a component of the ... |
420-589 |
2.54e-79 |
|
C-terminal helicase domain of the protein translocase subunit secA; SecA is a component of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA is a DEAD-like helicase belonging to superfamily (SF)2, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF1 helicases, SF2 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350190 [Multi-domain] Cd Length: 141 Bit Score: 253.24 E-value: 2.54e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 420 RNDMADLVYLTAKEKYAAIIQDIKGCRERGQPVLVGTVSIEQSELLSNLLDREKIPHKVLNAKFHEKEAEIVAQAGRSGA 499
Cdd:cd18803 1 RKDLPDLVYKTEEEKWKAIVEEVKELHAKGQPVLVGTRSVEKSELLSALLKEEGIPHNVLNAKNHAREAEIIAEAGQKGA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 500 VTVATNMAGRGTDIVLGGswkaEVEELenpteeqiakirvdwqerhdavvaaGGLHILGTERHESRRIDNQLRGRSGRQG 579
Cdd:cd18803 81 VTIATNMAGRGTDIKLGG----NVEEL-------------------------GGLHVIGTERHESRRIDNQLRGRAGRQG 131
|
170
....*....|
gi 765521316 580 DAGSSRFYLS 589
Cdd:cd18803 132 DPGSSRFYLS 141
|
|
| SecA_PP_bind |
smart00958 |
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and ... |
228-358 |
3.30e-57 |
|
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain.
Pssm-ID: 214938 [Multi-domain] Cd Length: 114 Bit Score: 191.90 E-value: 3.30e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 228 AAEDSSELYIKVNTLIPNLIRQdkedsddyvgEGDFSVDEKAKQVHMTERGQEKIELLLIQagllaegDSLYSAANISLL 307
Cdd:smart00958 1 PAEDSSELYKRADELVPTLKKD----------EEDYEVDEKSRQVALTEEGIEKAEKLLGI-------DNLYDPENIELV 63
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 765521316 308 HHVNAALRAHTLFERDVDYVVQDGEVIIVDEHTGRTMQGRRWSEGLHQAVE 358
Cdd:smart00958 64 HHVNQALRAHKLFKRDVDYIVRDGEVVIVDEFTGRVMPGRRWSDGLHQAIE 114
|
|
| SecA_PP_bind |
pfam01043 |
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and ... |
231-358 |
1.32e-53 |
|
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain.
Pssm-ID: 460039 [Multi-domain] Cd Length: 110 Bit Score: 181.46 E-value: 1.32e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 231 DSSELYIKVNTLIPNLIRQDkedsddyvgegDFSVDEKAKQVHMTERGQEKIE-LLLIqagllaegDSLYSAANISLLHH 309
Cdd:pfam01043 1 KSTELYRQADKFVKQLKEDE-----------DYEVDEKAKTVELTEEGIEKAEkLLGI--------DNLYDPENIELVHH 61
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 765521316 310 VNAALRAHTLFERDVDYVVQDGEVIIVDEHTGRTMQGRRWSEGLHQAVE 358
Cdd:pfam01043 62 INQALKAHHLFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIE 110
|
|
| SF2-N |
cd00046 |
N-terminal DEAD/H-box helicase domain of superfamily 2 helicases; The DEAD/H-like superfamily ... |
96-224 |
3.44e-16 |
|
N-terminal DEAD/H-box helicase domain of superfamily 2 helicases; The DEAD/H-like superfamily 2 helicases comprise a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This N-terminal domain contains the ATP-binding region.
Pssm-ID: 350668 [Multi-domain] Cd Length: 146 Bit Score: 76.29 E-value: 3.44e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 765521316 96 SNRIAEMRTGEGKTLTATLPAYLNALT-GKGVHVITVNDYLARRDADTNRPLFeFLGMTVGVNVAG--LGQLEKKAAYNS 172
Cdd:cd00046 2 ENVLITAPTGSGKTLAALLAALLLLLKkGKKVLVLVPTKALALQTAERLRELF-GPGIRVAVLVGGssAEEREKNKLGDA 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 765521316 173 DITYGTNNEFGFDYLRDNMAFspqervQRPLHYALIDEVDSILIDEARTPLI 224
Cdd:cd00046 81 DIIIATPDMLLNLLLREDRLF------LKDLKLIIVDEAHALLIDSRGALIL 126
|
|
| YecA |
COG3318 |
Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C ... |
861-905 |
3.03e-14 |
|
Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C motif [Function unknown];
Pssm-ID: 442547 [Multi-domain] Cd Length: 45 Bit Score: 67.62 E-value: 3.03e-14
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 765521316 861 EALNEAEHDAEVAAhtpVVRDGEKVGRNDPCPCGSGKKYKQCHGK 905
Cdd:COG3318 3 EALACGPDLWALAI---PRRAEPKVGRNDPCPCGSGKKYKKCCGA 44
|
|
| PRK05590 |
PRK05590 |
hypothetical protein; Provisional |
868-905 |
9.58e-14 |
|
hypothetical protein; Provisional
Pssm-ID: 235521 Cd Length: 166 Bit Score: 70.00 E-value: 9.58e-14
10 20 30
....*....|....*....|....*....|....*...
gi 765521316 868 HDAEVAAHTpvVRDGEKVGRNDPCPCGSGKKYKQCHGK 905
Cdd:PRK05590 130 HKEWKKSKT--VVNENKVGRNDPCPCGSGKKYKKCCGK 165
|
|
| SEC-C |
pfam02810 |
SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of ... |
887-905 |
1.01e-10 |
|
SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.
Pssm-ID: 460704 [Multi-domain] Cd Length: 19 Bit Score: 57.10 E-value: 1.01e-10
|
| PRK10396 |
PRK10396 |
hypothetical protein; Provisional |
858-902 |
1.14e-09 |
|
hypothetical protein; Provisional
Pssm-ID: 236680 [Multi-domain] Cd Length: 221 Bit Score: 59.37 E-value: 1.14e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 765521316 858 ATSEALNEAEHDAEVAAHTPV--------------------VRDGEKVGRNDPCPCGSGKKYKQC 902
Cdd:PRK10396 154 ELLEKMSPEAFEESVDAIRPAalalhaywmahpqekavqqpIKAEEKVGRNDPCPCGSGKKFKQC 218
|
|
| DEAD-like_helicase_N |
cd17912 |
N-terminal helicase domain of the DEAD-box helicase superfamily; The DEAD-like helicase ... |
97-139 |
2.43e-09 |
|
N-terminal helicase domain of the DEAD-box helicase superfamily; The DEAD-like helicase superfamily is a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. The N-terminal domain contains the ATP-binding region.
Pssm-ID: 350670 [Multi-domain] Cd Length: 81 Bit Score: 54.83 E-value: 2.43e-09
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 765521316 97 NRIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRD 139
Cdd:cd17912 1 NILHLGPTGSGKTLVAIQKIASAMSSGKSVLVVTPTKLLAHEI 43
|
|
| PRK01617 |
PRK01617 |
hypothetical protein; Provisional |
884-905 |
9.89e-09 |
|
hypothetical protein; Provisional
Pssm-ID: 234966 Cd Length: 154 Bit Score: 55.04 E-value: 9.89e-09
|
| SWIM_PBPRA1643 |
TIGR04102 |
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have ... |
886-904 |
1.04e-07 |
|
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have a SWIM, or SEC-C, domain (see pfam02810), a 21-amino acid putative Zn-binding domain that is shared with SecA, plant MuDR transposases, etc. This small protein family of unknown function occurs primarily in marine bacteria.
Pssm-ID: 200353 [Multi-domain] Cd Length: 108 Bit Score: 50.77 E-value: 1.04e-07
|
| PRK02250 |
PRK02250 |
hypothetical protein; Provisional |
884-904 |
5.93e-07 |
|
hypothetical protein; Provisional
Pssm-ID: 179393 [Multi-domain] Cd Length: 166 Bit Score: 50.26 E-value: 5.93e-07
|
| DEAD-like_helicase_C |
cd09300 |
C-terminal helicase domain of the DEAD-like helicases; This hierarchy of DEAD-like helicases ... |
550-587 |
1.28e-06 |
|
C-terminal helicase domain of the DEAD-like helicases; This hierarchy of DEAD-like helicases is composed of two superfamilies, SF1 and SF2, that share almost identical folds and extensive structural similarity in their catalytic core. Helicases are involved in ATP-dependent RNA or DNA unwinding. Two distinct types of helicases exist, those forming toroidal, predominantly hexameric structures, and those that do not. SF1 and SF2 helicases do not form toroidal structures, while SF3-6 helicases do. Their conserved helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350171 [Multi-domain] Cd Length: 59 Bit Score: 46.39 E-value: 1.28e-06
10 20 30
....*....|....*....|....*....|....*...
gi 765521316 550 AAGGLHILGTERHESRRIDNQLRGRSGRQGDAGSSRFY 587
Cdd:cd09300 21 APELNTIIVDKNLRSYRGLNQAFGRANRIYTFGGIVTY 58
|
|
| PRK00183 |
PRK00183 |
hypothetical protein; Provisional |
884-902 |
5.39e-06 |
|
hypothetical protein; Provisional
Pssm-ID: 166842 Cd Length: 157 Bit Score: 47.49 E-value: 5.39e-06
|
| PRK12318 |
PRK12318 |
methionyl aminopeptidase; |
885-903 |
1.32e-04 |
|
methionyl aminopeptidase;
Pssm-ID: 183434 [Multi-domain] Cd Length: 291 Bit Score: 44.81 E-value: 1.32e-04
|
| YchJ |
COG3012 |
Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function ... |
886-902 |
1.65e-03 |
|
Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function unknown];
Pssm-ID: 442249 Cd Length: 144 Bit Score: 39.83 E-value: 1.65e-03
|
| |
