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Conserved domains on  [gi|769892292|ref|WP_045033719|]
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CsgE family curli-type amyloid fiber assembly protein [Draconibacterium sediminis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CsgE super family cl08115
Curli assembly protein CsgE; Curli are a class highly aggregated surface fibres that are part ...
 60-161 4.04e-20

Curli assembly protein CsgE; Curli are a class highly aggregated surface fibres that are part of a complex extracellular matrix. They promote biofilm formation in addition to other activities. CsgE is a non-structural protein involved in curli biogenesis. CsgE forms an outer membrane complex with the curli assembly proteins CsgG and CsgF.


The actual alignment was detected with superfamily member pfam10627:

Pssm-ID: 447574  Cd Length: 105  Bit Score: 80.02  E-value: 4.04e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 769892292   60 IDGLLFDETKTKSGRDFYDLFYRDWEAPVNVKNYSIFVSEKPYRLTTTQIQVRINETLVFQSFLQPRRDIVETLAQQAVA 139
Cdd:pfam10627   1 IDGLVLDRTITRFGHDFYRYFSSYWRDLPSSQDFNLTINERPSARAGSLITVEHNQQVIYRTFLGPNRRDIKEEAEQAAD 80

                          90       100
                  ....*....|....*....|..
gi 769892292  140 RTQVYLQNYEAILKQLEGADRA 161
Cdd:pfam10627  81 IVIDYLAQRQLQALLLDTPDLA 102
 
Name Accession Description Interval E-value
CsgE pfam10627
Curli assembly protein CsgE; Curli are a class highly aggregated surface fibres that are part ...
 60-161 4.04e-20

Curli assembly protein CsgE; Curli are a class highly aggregated surface fibres that are part of a complex extracellular matrix. They promote biofilm formation in addition to other activities. CsgE is a non-structural protein involved in curli biogenesis. CsgE forms an outer membrane complex with the curli assembly proteins CsgG and CsgF.


Pssm-ID: 431403  Cd Length: 105  Bit Score: 80.02  E-value: 4.04e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 769892292   60 IDGLLFDETKTKSGRDFYDLFYRDWEAPVNVKNYSIFVSEKPYRLTTTQIQVRINETLVFQSFLQPRRDIVETLAQQAVA 139
Cdd:pfam10627   1 IDGLVLDRTITRFGHDFYRYFSSYWRDLPSSQDFNLTINERPSARAGSLITVEHNQQVIYRTFLGPNRRDIKEEAEQAAD 80

                          90       100
                  ....*....|....*....|..
gi 769892292  140 RTQVYLQNYEAILKQLEGADRA 161
Cdd:pfam10627  81 IVIDYLAQRQLQALLLDTPDLA 102
PRK10386 PRK10386
curli production assembly/transport protein CsgE;
59-143 2.62e-07

curli production assembly/transport protein CsgE;


Pssm-ID: 236678  Cd Length: 130  Bit Score: 47.08  E-value: 2.62e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 769892292  59 EIDGLLFDETKTKSGRDFYDLFYRDWEAPVnvkNYSIFVSEKPYRLTTTQIQVRINETLVFQSFLQP-----RRDIVETL 133
Cdd:PRK10386  27 EVPGLLTDHTVSSIGHDFYRAFSDKWESDY---DGNLTINERPSARWGSWITITVNQDVIYQTFLFPnkrdfEKTVVFAL 103

                         90
                 ....*....|..
gi 769892292 134 AQ--QAVARTQV 143
Cdd:PRK10386 104 DQteEALNRRQI 115
 
Name Accession Description Interval E-value
CsgE pfam10627
Curli assembly protein CsgE; Curli are a class highly aggregated surface fibres that are part ...
 60-161 4.04e-20

Curli assembly protein CsgE; Curli are a class highly aggregated surface fibres that are part of a complex extracellular matrix. They promote biofilm formation in addition to other activities. CsgE is a non-structural protein involved in curli biogenesis. CsgE forms an outer membrane complex with the curli assembly proteins CsgG and CsgF.


Pssm-ID: 431403  Cd Length: 105  Bit Score: 80.02  E-value: 4.04e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 769892292   60 IDGLLFDETKTKSGRDFYDLFYRDWEAPVNVKNYSIFVSEKPYRLTTTQIQVRINETLVFQSFLQPRRDIVETLAQQAVA 139
Cdd:pfam10627   1 IDGLVLDRTITRFGHDFYRYFSSYWRDLPSSQDFNLTINERPSARAGSLITVEHNQQVIYRTFLGPNRRDIKEEAEQAAD 80

                          90       100
                  ....*....|....*....|..
gi 769892292  140 RTQVYLQNYEAILKQLEGADRA 161
Cdd:pfam10627  81 IVIDYLAQRQLQALLLDTPDLA 102
PRK10386 PRK10386
curli production assembly/transport protein CsgE;
59-143 2.62e-07

curli production assembly/transport protein CsgE;


Pssm-ID: 236678  Cd Length: 130  Bit Score: 47.08  E-value: 2.62e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 769892292  59 EIDGLLFDETKTKSGRDFYDLFYRDWEAPVnvkNYSIFVSEKPYRLTTTQIQVRINETLVFQSFLQP-----RRDIVETL 133
Cdd:PRK10386  27 EVPGLLTDHTVSSIGHDFYRAFSDKWESDY---DGNLTINERPSARWGSWITITVNQDVIYQTFLFPnkrdfEKTVVFAL 103

                         90
                 ....*....|..
gi 769892292 134 AQ--QAVARTQV 143
Cdd:PRK10386 104 DQteEALNRRQI 115
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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