MULTISPECIES: YaiI/YqxD family protein [Photobacterium]
DUF188 domain-containing protein( domain architecture ID 10004144)
uncharacterized DUF188 domain-containing protein similar to Escherichia coli YaiI
List of domain hits
Name | Accession | Description | Interval | E-value | |||
YaiI | COG1671 | Uncharacterized conserved protein YaiI, UPF0178 family [Function unknown]; |
1-149 | 2.49e-94 | |||
Uncharacterized conserved protein YaiI, UPF0178 family [Function unknown]; : Pssm-ID: 441277 Cd Length: 149 Bit Score: 268.90 E-value: 2.49e-94
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Name | Accession | Description | Interval | E-value | |||
YaiI | COG1671 | Uncharacterized conserved protein YaiI, UPF0178 family [Function unknown]; |
1-149 | 2.49e-94 | |||
Uncharacterized conserved protein YaiI, UPF0178 family [Function unknown]; Pssm-ID: 441277 Cd Length: 149 Bit Score: 268.90 E-value: 2.49e-94
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PRK00124 | PRK00124 | YaiI/YqxD family protein; |
1-146 | 9.17e-75 | |||
YaiI/YqxD family protein; Pssm-ID: 178882 [Multi-domain] Cd Length: 151 Bit Score: 219.73 E-value: 9.17e-75
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DUF188 | pfam02639 | Uncharacterized BCR, YaiI/YqxD family COG1671; |
17-146 | 1.90e-72 | |||
Uncharacterized BCR, YaiI/YqxD family COG1671; Pssm-ID: 426896 Cd Length: 130 Bit Score: 213.11 E-value: 1.90e-72
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PIN_YqxD-like | cd18720 | LabA-like PIN domain of uncharacterized Bacillus subtilis YqxD and related proteins; This ... |
2-97 | 1.37e-62 | |||
LabA-like PIN domain of uncharacterized Bacillus subtilis YqxD and related proteins; This subfamily includes the PIN domain of uncharacterized Bacillus subtilis YqxD (also known as YqfM) and Escherichia coli YaiI. Firmicute, such as Bacillus and Listeria, YqxD proteins are encoded within RNA polymerase major sigma43 operons, whereas E. coli YaiL is transcribed as a mono cistron. This subfamily belongs to LabA-like PIN domain family which includes Synechococcus elongatus PCC 7942 LabA, human ZNF451, uncharacterized Bacillus subtilis YqxD and Escherichia coli YaiI, and the N-terminal domain of a well-conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. Curiously, a gene labeled NicB from Pseudomonas putida S16, which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like PIN family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons. Pssm-ID: 350287 Cd Length: 96 Bit Score: 186.90 E-value: 1.37e-62
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Name | Accession | Description | Interval | E-value | |||
YaiI | COG1671 | Uncharacterized conserved protein YaiI, UPF0178 family [Function unknown]; |
1-149 | 2.49e-94 | |||
Uncharacterized conserved protein YaiI, UPF0178 family [Function unknown]; Pssm-ID: 441277 Cd Length: 149 Bit Score: 268.90 E-value: 2.49e-94
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PRK00124 | PRK00124 | YaiI/YqxD family protein; |
1-146 | 9.17e-75 | |||
YaiI/YqxD family protein; Pssm-ID: 178882 [Multi-domain] Cd Length: 151 Bit Score: 219.73 E-value: 9.17e-75
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DUF188 | pfam02639 | Uncharacterized BCR, YaiI/YqxD family COG1671; |
17-146 | 1.90e-72 | |||
Uncharacterized BCR, YaiI/YqxD family COG1671; Pssm-ID: 426896 Cd Length: 130 Bit Score: 213.11 E-value: 1.90e-72
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PIN_YqxD-like | cd18720 | LabA-like PIN domain of uncharacterized Bacillus subtilis YqxD and related proteins; This ... |
2-97 | 1.37e-62 | |||
LabA-like PIN domain of uncharacterized Bacillus subtilis YqxD and related proteins; This subfamily includes the PIN domain of uncharacterized Bacillus subtilis YqxD (also known as YqfM) and Escherichia coli YaiI. Firmicute, such as Bacillus and Listeria, YqxD proteins are encoded within RNA polymerase major sigma43 operons, whereas E. coli YaiL is transcribed as a mono cistron. This subfamily belongs to LabA-like PIN domain family which includes Synechococcus elongatus PCC 7942 LabA, human ZNF451, uncharacterized Bacillus subtilis YqxD and Escherichia coli YaiI, and the N-terminal domain of a well-conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. Curiously, a gene labeled NicB from Pseudomonas putida S16, which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like PIN family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons. Pssm-ID: 350287 Cd Length: 96 Bit Score: 186.90 E-value: 1.37e-62
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PIN_LabA-like | cd06167 | PIN domain of Synechococcus elongatus LabA (low-amplitude and bright) and related proteins; ... |
2-95 | 4.36e-05 | |||
PIN domain of Synechococcus elongatus LabA (low-amplitude and bright) and related proteins; The LabA-like PIN domain family includes Synechococcus elongatus PCC 7942 LabA which participates in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression. This family also includes the N-terminal domain of limkain b1, a human autoantigen associated with cytoplasmic vesicles. Other members are the LabA-like PIN domains of human ZNF451, uncharacterized Bacillus subtilis YqxD and Escherichia coli YaiI, and the N-terminal domain of a well-conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. Curiously, a gene labeled NicB from Pseudomonas putida S16, which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into this family. Pssm-ID: 350201 Cd Length: 113 Bit Score: 40.48 E-value: 4.36e-05
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Blast search parameters | ||||
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