|
Name |
Accession |
Description |
Interval |
E-value |
| PRK09796 |
PRK09796 |
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional |
1-472 |
0e+00 |
|
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Pssm-ID: 182081 Cd Length: 472 Bit Score: 861.41 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 1 MAKNYAALANDVISALGGKENIVAVTHCMTRLRFVLKDESLTDAARLKSISGVLGVVRNDNQCQVIIGNTVSQAYREVVS 80
Cdd:PRK09796 1 MAKNYAALARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIGNTVSQAFQEVVS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 81 LLPADLQPAVPEGPQKLTLRRVGAGILDALIGTMSPLIPAIIGGSMVKLLAMILEMTGVLPKGAPTLTILTVIGDGAFFF 160
Cdd:PRK09796 81 LLPGDMQPAQPVGKPKLTLRRIGAGILDALIGTMSPLIPAIIGGSMVKLLAMILEMSGVLTKGSPTLTILNVIGDGAFFF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 161 LPLMVAASAAVKFKTNMSLAIAIAGVLVHPSFIELMAKAAQGEHVEFAFIPVTAVKYTYTVIPALVMTWCLSYIERWVDR 240
Cdd:PRK09796 161 LPLMVAASAAIKFKTNMSLAIAIAGVLVHPSFIELMAKAAQGEHVEFALIPVTAVKYTYTVIPALVMTWCLSYIERWVDR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 241 ITPAVTKNFLKPMLIVLIAAPLAIVLIGPLGIWIGSAISALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRVFTPTIIQT 320
Cdd:PRK09796 241 ITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGSAISALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRVFTPTIIQT 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 321 IAETGKEGMVMPSEIGANLSLGGSSLAVAWKTKNPELRQTALAAAASAIMAGISEPALYGVAVRLKRPLIASLISGFICG 400
Cdd:PRK09796 321 IAETGKEGMVMPSEIGANLSLGGSSLAVAWKTKNPELRQTALAAAASAIMAGISEPALYGVAIRLKRPLIASLISGFICG 400
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 779869700 401 AVAGMAGLASHSMAAPGLFTSVQFFDPANPMTIVWVFGVMGLAVVLSFVLTLLLGFEDIPVEDEAEKARALQ 472
Cdd:PRK09796 401 AVAGMAGLASHSMAAPGLFTSVQFFDPANPMSIVWVFAVMALAVVLSFILTLLLGFEDIPVEEAAAEARKHQ 472
|
|
| PTS-II-ABC-beta |
TIGR01995 |
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS ... |
5-474 |
7.00e-137 |
|
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Pssm-ID: 273919 [Multi-domain] Cd Length: 610 Bit Score: 407.51 E-value: 7.00e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 5 YAALANDVISALGGKENIVAVTHCMTRLRFVLKDESLTDAARLKSISGVLGVVRNDNQCQVIIGNTVSQAYREVVSLLPA 84
Cdd:TIGR01995 1 YQDLAKAIIENVGGKENIESVTHCATRLRFTLKDDAKADTEKLKKISGVITVVKSGGQYQVVIGNDVNDVYQALMDVLGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 85 DLQPAVPEGPQKltlRRVGAGILDALIGTMSPLIPAIIGGSMVKLLAMILEMTGVLPKGAPTLTILTVIGDGAFFFLPLM 164
Cdd:TIGR01995 81 DDQAEDDDSKGK---KSILNKLIDLISGVFTPLLPALAGAGLLKAVLTLLTMTGLISADSQTYQILNAMGDAVFYFLPIL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 165 VAASAAVKFKTNMSLAIAIAGVLVHPSFIELMAKaaqGEHVEFAFIPVTAVKYTYTVIPALVMTWCLSYIERWVDRITPA 244
Cdd:TIGR01995 158 LAITAAKRFKVNPYLAAAIGAALLHPTLVAMVGS---GKPVTFFGIPVTLMSYSSSVIPVILAVWLMSYVEKFLKKVIPG 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 245 VTKNFLKPMLIVLIAAPLAIVLIGPLGIWIGSAISALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRVFTPTIIQTIAET 324
Cdd:TIGR01995 235 ALKNFLTPLLVMLITVPLTLLIIGPLGNYAGEGISSGILFLYEVSPWLAGALLAALWPVLVMFGLHWAMIPIVINNIATQ 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 325 GKEGMVMPSEIGANLSLGGSSLAVAWKTKNPELRQtALAAAASAIMAGISEPALYGVAVRLKRPLIASLISGFICGAVAG 404
Cdd:TIGR01995 315 GFDPLILPASLAANFAQGGAALAVMLRTKNKKLKA-LAGSATISALFGITEPAIYGVNLPLKKPFYAAMIGGAVGGAIIG 393
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 405 MAGLASHSMAAPGLFTSVQFFDPANPMTIVWVFGVMGLAVVLSFVLTLLLGFEDiPVEDEAEKARALQTA 474
Cdd:TIGR01995 394 IGSVKAFTAFAPGLLGLPMFINPSDGANFISALIAIVISFVVSFVLTYFIGFKD-QEDVVTQEAAALSKD 462
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
105-483 |
3.78e-82 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 261.80 E-value: 3.78e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 105 GILDALIGTMSPLIPAIIGGSMVKLLAMILEMTGVLPKG---APTLTILTVIGDGAFFFLPLMVAASAAVKFKTNMSLAI 181
Cdd:COG1263 10 RFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLLGEGsflSGTYQILNAAGDAVFYFLPLLFAIGAAKGFGGNPALAA 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 182 AIAGVLVHPSFIELMAKAaqGEHVEFAFIPvTAVKYTYTVIPALVMTWCLSYIERWVDRITPAVTKNFLKPMLIVLIAAP 261
Cdd:COG1263 90 VIGYLLVHPTLLNAYAVA--GGYISFLGIP-TLIGYQGGVFPGILAGWLAAYLEKFLKKKLPDALGFFFVPILTLLIMVP 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 262 LAIVLIGPLGIWIGSAISALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRVFTPTIIQTIAETGKEGMvMPSEIGANLSL 341
Cdd:COG1263 167 LALLVIGPIWPPIGNGIAAGLGWIYGLAGAIGGFIYGFLYRLLVPTGLHHGLNPIFWFLLGGTGDDGL-FPILAAAMFGQ 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 342 GGSSLAVAWKTK-NPELRQTALAAAASAIMAGISEPALYGVAVRLKRPLIASLISGFICGAVAGMAGLASHSMAAPGLFT 420
Cdd:COG1263 246 PGAALAVYLKAKpNKKVKGLAISAALTAFLTGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAGLLGVKAFSFGVGGLID 325
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 779869700 421 SVQFFDPaNPMTIVWVFGVMGLAVVLSFVLTLLLGFEDIPVEDEAEKARALQTAPVQNNAAKA 483
Cdd:COG1263 326 FPSILNP-GATNLLLYLIGLVIAFVYYFVFTFLIGREDEEEEEKLATKADAKKEEAEAAAAAL 387
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
8-82 |
2.12e-32 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 118.40 E-value: 2.12e-32
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 779869700 8 LANDVISALGGKENIVAVTHCMTRLRFVLKDESLTDAARLKSISGVLGVVRNDNQCQVIIGNTVSQAYREVVSLL 82
Cdd:cd00212 3 LAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGPGVADVYKEAIKLL 77
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
113-396 |
1.50e-29 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 117.83 E-value: 1.50e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 113 TMSPLIPAIIGGSMVKLLA-----MILEMTGVLPKGAPTLTILTVIGDGAFFFLPLMVAASAAVKF-KTNMSLAIAIAGV 186
Cdd:pfam02378 3 GFMPPIPLLIAGGILLGLGnlpndTTGLPAGGFTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLaGGDGVAGAAGLIG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 187 LVHPS---FIELMAKAAQG-EHVEFAFIPVTAVKYTYTVIPALVMTWCLSYIERWVDRITPAVTKNFLKPMLIVLIAAPL 262
Cdd:pfam02378 83 LLSFNlaaAISVALTAAGLsGGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKNITIKLPDSLPFFVGKRFVPIITGFV 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 263 AIVLIGPLGIWIGSAIS----ALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRVFTPTIIQTIA-----------ETGKE 327
Cdd:pfam02378 163 TLLVIGPVLGLIWPAIQgglnALGLLLIIAGGILGGLIFGFLERLLWPFGLHGAFIAIFWFLPIggsnpianqqaYGAGA 242
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 779869700 328 GMVMPSEIGANLSLGGSSLAV---AWKTKNPELRQTALAAAASAIMAGISEPALYGVAVRLKRPL-IASLISG 396
Cdd:pfam02378 243 AHILTGGFDVMFGGPGATLALyaaAFLFKKSKVKKLLGSAALTPFLFGITEPLEFGFPFVLNPPFfIPAILAG 315
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK09796 |
PRK09796 |
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional |
1-472 |
0e+00 |
|
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Pssm-ID: 182081 Cd Length: 472 Bit Score: 861.41 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 1 MAKNYAALANDVISALGGKENIVAVTHCMTRLRFVLKDESLTDAARLKSISGVLGVVRNDNQCQVIIGNTVSQAYREVVS 80
Cdd:PRK09796 1 MAKNYAALARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIGNTVSQAFQEVVS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 81 LLPADLQPAVPEGPQKLTLRRVGAGILDALIGTMSPLIPAIIGGSMVKLLAMILEMTGVLPKGAPTLTILTVIGDGAFFF 160
Cdd:PRK09796 81 LLPGDMQPAQPVGKPKLTLRRIGAGILDALIGTMSPLIPAIIGGSMVKLLAMILEMSGVLTKGSPTLTILNVIGDGAFFF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 161 LPLMVAASAAVKFKTNMSLAIAIAGVLVHPSFIELMAKAAQGEHVEFAFIPVTAVKYTYTVIPALVMTWCLSYIERWVDR 240
Cdd:PRK09796 161 LPLMVAASAAIKFKTNMSLAIAIAGVLVHPSFIELMAKAAQGEHVEFALIPVTAVKYTYTVIPALVMTWCLSYIERWVDR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 241 ITPAVTKNFLKPMLIVLIAAPLAIVLIGPLGIWIGSAISALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRVFTPTIIQT 320
Cdd:PRK09796 241 ITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGSAISALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRVFTPTIIQT 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 321 IAETGKEGMVMPSEIGANLSLGGSSLAVAWKTKNPELRQTALAAAASAIMAGISEPALYGVAVRLKRPLIASLISGFICG 400
Cdd:PRK09796 321 IAETGKEGMVMPSEIGANLSLGGSSLAVAWKTKNPELRQTALAAAASAIMAGISEPALYGVAIRLKRPLIASLISGFICG 400
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 779869700 401 AVAGMAGLASHSMAAPGLFTSVQFFDPANPMTIVWVFGVMGLAVVLSFVLTLLLGFEDIPVEDEAEKARALQ 472
Cdd:PRK09796 401 AVAGMAGLASHSMAAPGLFTSVQFFDPANPMSIVWVFAVMALAVVLSFILTLLLGFEDIPVEEAAAEARKHQ 472
|
|
| PTS-II-ABC-beta |
TIGR01995 |
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS ... |
5-474 |
7.00e-137 |
|
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Pssm-ID: 273919 [Multi-domain] Cd Length: 610 Bit Score: 407.51 E-value: 7.00e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 5 YAALANDVISALGGKENIVAVTHCMTRLRFVLKDESLTDAARLKSISGVLGVVRNDNQCQVIIGNTVSQAYREVVSLLPA 84
Cdd:TIGR01995 1 YQDLAKAIIENVGGKENIESVTHCATRLRFTLKDDAKADTEKLKKISGVITVVKSGGQYQVVIGNDVNDVYQALMDVLGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 85 DLQPAVPEGPQKltlRRVGAGILDALIGTMSPLIPAIIGGSMVKLLAMILEMTGVLPKGAPTLTILTVIGDGAFFFLPLM 164
Cdd:TIGR01995 81 DDQAEDDDSKGK---KSILNKLIDLISGVFTPLLPALAGAGLLKAVLTLLTMTGLISADSQTYQILNAMGDAVFYFLPIL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 165 VAASAAVKFKTNMSLAIAIAGVLVHPSFIELMAKaaqGEHVEFAFIPVTAVKYTYTVIPALVMTWCLSYIERWVDRITPA 244
Cdd:TIGR01995 158 LAITAAKRFKVNPYLAAAIGAALLHPTLVAMVGS---GKPVTFFGIPVTLMSYSSSVIPVILAVWLMSYVEKFLKKVIPG 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 245 VTKNFLKPMLIVLIAAPLAIVLIGPLGIWIGSAISALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRVFTPTIIQTIAET 324
Cdd:TIGR01995 235 ALKNFLTPLLVMLITVPLTLLIIGPLGNYAGEGISSGILFLYEVSPWLAGALLAALWPVLVMFGLHWAMIPIVINNIATQ 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 325 GKEGMVMPSEIGANLSLGGSSLAVAWKTKNPELRQtALAAAASAIMAGISEPALYGVAVRLKRPLIASLISGFICGAVAG 404
Cdd:TIGR01995 315 GFDPLILPASLAANFAQGGAALAVMLRTKNKKLKA-LAGSATISALFGITEPAIYGVNLPLKKPFYAAMIGGAVGGAIIG 393
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 405 MAGLASHSMAAPGLFTSVQFFDPANPMTIVWVFGVMGLAVVLSFVLTLLLGFEDiPVEDEAEKARALQTA 474
Cdd:TIGR01995 394 IGSVKAFTAFAPGLLGLPMFINPSDGANFISALIAIVISFVVSFVLTYFIGFKD-QEDVVTQEAAALSKD 462
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
105-483 |
3.78e-82 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 261.80 E-value: 3.78e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 105 GILDALIGTMSPLIPAIIGGSMVKLLAMILEMTGVLPKG---APTLTILTVIGDGAFFFLPLMVAASAAVKFKTNMSLAI 181
Cdd:COG1263 10 RFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLLGEGsflSGTYQILNAAGDAVFYFLPLLFAIGAAKGFGGNPALAA 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 182 AIAGVLVHPSFIELMAKAaqGEHVEFAFIPvTAVKYTYTVIPALVMTWCLSYIERWVDRITPAVTKNFLKPMLIVLIAAP 261
Cdd:COG1263 90 VIGYLLVHPTLLNAYAVA--GGYISFLGIP-TLIGYQGGVFPGILAGWLAAYLEKFLKKKLPDALGFFFVPILTLLIMVP 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 262 LAIVLIGPLGIWIGSAISALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRVFTPTIIQTIAETGKEGMvMPSEIGANLSL 341
Cdd:COG1263 167 LALLVIGPIWPPIGNGIAAGLGWIYGLAGAIGGFIYGFLYRLLVPTGLHHGLNPIFWFLLGGTGDDGL-FPILAAAMFGQ 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 342 GGSSLAVAWKTK-NPELRQTALAAAASAIMAGISEPALYGVAVRLKRPLIASLISGFICGAVAGMAGLASHSMAAPGLFT 420
Cdd:COG1263 246 PGAALAVYLKAKpNKKVKGLAISAALTAFLTGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAGLLGVKAFSFGVGGLID 325
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 779869700 421 SVQFFDPaNPMTIVWVFGVMGLAVVLSFVLTLLLGFEDIPVEDEAEKARALQTAPVQNNAAKA 483
Cdd:COG1263 326 FPSILNP-GATNLLLYLIGLVIAFVYYFVFTFLIGREDEEEEEKLATKADAKKEEAEAAAAAL 387
|
|
| pts-Glc |
TIGR00852 |
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside ... |
154-442 |
3.53e-81 |
|
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIC domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273299 Cd Length: 289 Bit Score: 253.39 E-value: 3.53e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 154 GDGAFFFLPLMVAASAAVKFKTNMSLAIAIAGVLVHPSFIELMAKAAQGEHvEFAFIPVTAVKYTYTVIPALVMTWCLSY 233
Cdd:TIGR00852 1 GSAAFFFLPLLFAIGAAKGFGGNPYLGAALAGILVHPVLNNAMGVGAQAVG-NFFGFEIAKVGYTGVVGPIIVGAIALAL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 234 IERWVDRITPAVTKNFLKPMLIVLIAAPLAIVLIGPLGIWIGS-AISALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRV 312
Cdd:TIGR00852 80 HERFLDKKLPDVLGFFLGPRFVVIIAGFVAILLIGPLGRVWPPvGISALLHWLYSAGGALGGAIFGFLYRLLVPTGLHHI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 313 FTPTIIQTIAETGKEG--MVMPSEIGANLSLGGSSLAVAWKTKNPELRQTaLAAAASAIMAGISEPALYGVAVRLKRPLI 390
Cdd:TIGR00852 160 FYAIFIQLIAGGTVIGggQVIPGDALANMAQGGAALAVFFTAGDAKFKSI-GLPAAFSAGLGITEPAMYGVALRERRPFV 238
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 779869700 391 ASLISGFICGAVAGMAGLASHSMAAPGLFTSVQFFDPAnPMTIVWVFGVMGL 442
Cdd:TIGR00852 239 AGLIGSALLTAFLTGITEPLEFLFLFGAPGLYSIHAVL-AGSIFTVAIGMGI 289
|
|
| PRK09824 |
PRK09824 |
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional |
4-466 |
1.63e-80 |
|
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Pssm-ID: 236627 [Multi-domain] Cd Length: 627 Bit Score: 262.34 E-value: 1.63e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 4 NYAALANDVISALGGKENIVAVTHCMTRLRFVLKDESLTDAARLKSISGVLGVVRNDNQCQVIIGNTVSQAYREVVSLL- 82
Cdd:PRK09824 2 EYTELAREIVAGVGGADNIVSLMHCATRLRFKLKDNSKAQAEVLKKNPGVIMVVESGGQFQVVIGNHVADVFLAVNSVAg 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 83 PADLQPAVPEGPQKLTLRrvgAGILDALIGTMSPLIPAIIGGSMVK-LLAMILeMTGVLPKGAPTLTILTVIGDGAFFFL 161
Cdd:PRK09824 82 LGEKAQQAPENDKKGNLL---NRFIDVISGIFTPLIGVMAATGILKgMLALAL-TFGWTTEQSGTYKILFAASDALFFFF 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 162 PLMVAASAAVKFKTNMSLAIAIAGVLVHPSFIELMAKAAQGEHVEFAF--IPVTAVKYTYTVIPALVMTWCLSYIERWVD 239
Cdd:PRK09824 158 PIILGYTAGKKFGGNPFTAMVIGGALVHPLMIAAFEAGQKADALGLDFlgIPVTLLNYSSSVIPIIFSAWLCSILERRLN 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 240 RITPAVTKNFLKPMLIVLIAAPLAIVLIGPLGIWIGSAISALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRVFTPTIIQ 319
Cdd:PRK09824 238 AWLPSAIKNFFTPLLCLMVIVPLTFLLIGPLATWLSELLAAGYQWLYQAVPAFAGAVMGAFWQVFVIFGLHWGLVPLMIN 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 320 TIAETGKEGMvMPSEIGANLSLGGSSLAVAWKTKNPELRqTALAAAASAIMAGISEPALYGVAVRLKRPLIASLISGFIC 399
Cdd:PRK09824 318 NLTVLGHDTM-LPLLMPAVMAQVGAALGVFLCTRDAQKK-VVAGSAFLAGLFGITEPAVYGVNLPLKRPFIFGCISGALG 395
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 779869700 400 GAVAGMAGLASHSMAAPGLFTSVQFFDPANPMTIVWVfGVMG--LAVVLSFVLTLLLGFEDIPVEDEAE 466
Cdd:PRK09824 396 AAIIGYAQTKVYSFGLPSIFTFMQTIPPTGIDFTVWA-SVIGtvIAIGCAFVGTVMFGFPTAKRQPAQV 463
|
|
| PTS-II-BC-sucr |
TIGR01996 |
PTS system, sucrose-specific IIBC component; This model represents the fused enzyme II B and C ... |
4-454 |
1.19e-77 |
|
PTS system, sucrose-specific IIBC component; This model represents the fused enzyme II B and C components of the sucrose-specific PTS sugar transporter system. Sucrose is converted to sucrose-6-phosphate in the process of translocation into the cell. Some of these transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci, Streptococci, Lactococci, Lactobacilli, etc. which contain their own A domain as a C-terminal fusion. This family is closely related to the trehalose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively).
Pssm-ID: 131051 Cd Length: 461 Bit Score: 249.91 E-value: 1.19e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 4 NYAALANDVISALGGKENIVAVTHCMTRLRFVLKDESLTDAARLKSISGVLGVVRNDNQCQVIIGN-TVSQAYREVVSLL 82
Cdd:TIGR01996 1 NYQQVAKEILELLGGKDNIVSVAHCATRLRLVLKDESKIDKKAIENLDGVKGTFFNSGQYQIIIGTgVVNKVYDEIVKLT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 83 padLQPAVPEGPQKLTLRRvGAGILDALIGTMS----PLIPAII-GGSMVKLLAMI-------LEMTGVLPKGAPTLTIL 150
Cdd:TIGR01996 81 ---GLSESSTSEQKAEAAK-KMNPFQRFARTLSdifvPIIPAIVaTGLLMGLNGMLtafglfgLSGVSVAPIPEGLAEMI 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 151 TVIGDGAFFFLPLMVAASAAVKFKTNMSLAIAIAGVLVHPSF---IELMAKAAQGEHVEFAFIPVTAVKYTYTVIPALVM 227
Cdd:TIGR01996 157 NVFTSTAFAFLPILIGFSAAKRFGGNPYLGAVIGLIMVHPSLpnaYGVAAGTATGKAWNIFGLHIPVVGYQGTVLPVLVA 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 228 TWCLSYIERWVDRITPAVTKNFLKPMLIVLIAAPLAIVLIGPLGIWIGSAISALVYTIHGYLGWLSVAIMGALWPLLVMT 307
Cdd:TIGR01996 237 VWILAKIEKFLRKVVPNALDLLLTPFLTLLITGFLTLLVIGPIGRWVGDVLTDGLQWLYDLPGGLGGLLFGGLYSLIVIT 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 308 GMHRVFTPTIIQTIAETGKEG-MVMPSEIGANLSLGGSSLAVAWKTKNPELRQTaLAAAASAIMAGISEPALYGVAVRLK 386
Cdd:TIGR01996 317 GIHHSFHAIETQLLANTKTGGnFLFPIASMANVAQGGAALAVFFKTKDKKLKGL-AIPSGLSALLGITEPAIFGVNLRYR 395
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 387 RPLIASLISGFICGAVAGMAGLASHSMAAPGL--FTSVQFFDPANPMTIVwvfgVMGLAVVLSFVLTLLL 454
Cdd:TIGR01996 396 KPFIAALIGGAIGGAYVVLFHVAATAYGLTGIpgFLSILPSGINLLHYIV----GMLIAFAVAFIATLLL 461
|
|
| PTS-IIBC-Tre |
TIGR01992 |
PTS system, trehalose-specific IIBC component; This model represents the fused enzyme II B and ... |
9-455 |
6.19e-62 |
|
PTS system, trehalose-specific IIBC component; This model represents the fused enzyme II B and C components of the trehalose-specific PTS sugar transporter system. Trehalose is converted to trehalose-6-phosphate in the process of translocation into the cell. These transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci and Streptococci which contain their own A domain as a C-terminal fusion. This family is closely related to the sucrose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively). In E. coli, B. subtilis and P. fluorescens the presence of this gene is associated with the presence of trehalase which degrades T6P to glucose and glucose-6-P. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.
Pssm-ID: 273916 Cd Length: 462 Bit Score: 208.81 E-value: 6.19e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 9 ANDVISALGGKENIVAVTHCMTRLRFVLKDESLTDAARLKSISGVLGVVRNDNQCQVIIGNT----VSQAYREVVSLLPA 84
Cdd:TIGR01992 4 AKAILEAIGGKENIEAATHCVTRLRFVLKDPSKVDVKALEQIDLVKGSFTNAGQFQVVIGPGtvdkVYAALIAETGIAEV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 85 DLQPAVPEGPQKLT-LRRVGAGILDALIgtmsPLIPAIIGGSMVKLLAMILEMTG----------VLPKGAPTLTILTVI 153
Cdd:TIGR01992 84 SKEEVKKAAAKNMNpLQRLIKLLADIFI----PILPAIITAGLLMGINNLLGAKGmsfggqtlveVYPQWAGIYNFINLI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 154 GDGAFFFLPLMVAASAAVKFKTNMSLAIAIAGVLVHPSFIE--LMAKAAQGEHV----EFAFIPVTAVKYTYTVIPALVM 227
Cdd:TIGR01992 160 AETAFHFLPALIGWSAVKKFGGSPILGIVLGLMLVHPQLLNayLYGQALAEGNIpvwdLFGFFEIQKVGYQGQVLPALLA 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 228 TWCLSYIERWVDRITPAVTKNFLKPMLIVLIAAPLAIVLIGPLGIWIGSAISALVYTIHGYLGWLSVAIMGALWPLLVMT 307
Cdd:TIGR01992 240 GYVLAVIEKWLRKRVPDAIQLLVVPPVSLLVTGFLAHAIIGPIGRLIGNGITSGVTALFTSAAWLGGAIFGLLYAPLVIT 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 308 GMHRVFTPTIIQTIAETGKEGmVMPSEIGANLSLGGSSLAVAWKTKNpELRQTALAAAASAIMAGISEPALYGVAVRLKR 387
Cdd:TIGR01992 320 GLHHMFLAVDLQLIGSLGGTF-LWPMIALSNIAQGSAALGIIFMSRN-EKEKGLSLTSAISAYLGVTEPAMFGVNLKYKF 397
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 388 PLIASLISGFICGAVAGMAGLASHSMAAPGL--FTSVQffdpanPMTIVWVFGVMGLAVVLSFVLTLLLG 455
Cdd:TIGR01992 398 PFIAAMIGSGLAGLLSGLNGVLANSIGVGGLpgFISIQ------PQYWPVFAIGMAIAIVVPFVLTIFFS 461
|
|
| PRK11007 |
PRK11007 |
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional |
13-454 |
5.81e-42 |
|
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Pssm-ID: 182896 Cd Length: 473 Bit Score: 155.61 E-value: 5.81e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 13 ISALGGKENIVAVTHCMTRLRFVLKDESLTDAARLKSISGVLGVVRNDNQCQVIIGNTVSQAYREvvsLLPADLQPAVPE 92
Cdd:PRK11007 14 IELVGGRENIATVSHCITRLRFVLNDPANADPKEIEQLPMVKGCFTNAGQFQVVIGTEVGDYYKA---LIATTGQAEVDK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 93 GPQKLTLRRvGAGILDALIGTMS----PLIPAII-GGSMVKLLAMILEM--------TGVLPKGAPTLTILTVIGDGAFF 159
Cdd:PRK11007 91 EQAKKAARQ-NMKWHERLISHFAeiffPLLPALIsGGLILGFRNVIGDIpmsdgqtlAQMYPFWQTIYDFLWLIGEAIFF 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 160 FLPLMVAASAAVKFKTNMSLAIAIAGVLVHPsfiELMAKAAQGEHV----EFAFIPVTAVKYTYTVIPALVMTWCLSYIE 235
Cdd:PRK11007 170 YLPVGICWSAVKKMGGTPILGIVLGVTLVSP---QLMNAYLLGQQLpevwDFGLFSIEKVGYQAQVIPALLAGLALGFIE 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 236 RWVDRITPAVTKNFLKPMLIVLIAAPLAIVLIGPLGIWIGSAISALV-YTIHGYLGWLSVAIMGALWPLLVMTGMHRVFT 314
Cdd:PRK11007 247 TRLKRIVPDYLYLVVVPVCSLILAVFLAHALIGPFGRMIGDGVAFAVkALMTGSFAPIGAALFGFLYAPLVITGVHQTTL 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 315 PTIIQTIAETGKEGmVMPSEIGANLSLGGSSLAVAWKTKNPELRQtALAAAASAIMAGISEPALYGVAVRLKRPLIASLI 394
Cdd:PRK11007 327 AIDLQMIQSMGGTP-VWPLIALSNIAQASAVVGIIIISRKHNERE-ISVPAAISAYLGVTEPAMYGINLKYRFPMLCAMI 404
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 779869700 395 SGFICGAVAGMAGLASHSMAAPGL--FTSVQffdPAnpmtiVW-VFGV-MGLAVVLSFVLTLLL 454
Cdd:PRK11007 405 GSALAGLICGLNGVMANGIGVGGLpgILSIQ---PQ-----YWqVYALaMLVAIVVPIVLTSFI 460
|
|
| murP |
PRK09586 |
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed |
1-459 |
3.44e-35 |
|
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Pssm-ID: 181971 [Multi-domain] Cd Length: 476 Bit Score: 136.73 E-value: 3.44e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 1 MAKNYAALANDVISALGGKENIVAVTHCMTRLRFVLKDESLTDAARLKSISGVLGVVRNDNQCQVIIGNTVSQAYREVVS 80
Cdd:PRK09586 1 MAKISSELLNTILTRVGGPGNIASCGNCMTRLRLTLHDSSLVDPAAIKTIEGVKGVILSDDQVQVVLGPGKAQRAAKAMN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 81 LL-------PADLQPAVPEGPQKLTLRRVGA--GILDALIGTMSPLIPAIIGGSMVKLLAMILEMTGVLPKGAPTLTI-- 149
Cdd:PRK09586 81 ELlgeaaapVQDLAEIAAQNKRQLKAKQTSGvqQFLAKFATIFTPLIPGFIAAGLLLGIATLIEQVMHVPADAQGTLPda 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 150 ---LTVIGDGAFFFLPLMVAASAAVKF-KTNMSLAIaIAGVLVHPSFIELMAKAAQGEHVEFAFipvtAVKYTYTVIPAL 225
Cdd:PRK09586 161 lnyMKVFSKGLFTFLSILIGYNAQQAFgGTGVNGAI-IASLFLLGYNPAATTGYYAGFHDFFGL----PIDPRGNIIGVL 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 226 VMTWCLSYIERWVDRITPAVTKNFLKPMLIVLIAAPLAIVLIGPLGIWIGSAISALVYTIHGylGWLSVAIMGALWPLLV 305
Cdd:PRK09586 236 IAAIAGARIERMVRRFMPDDLDMILTSLITLLITGALAFLIIMPLGGWLFEGMSWLFMHLNS--NPFGCAVLAGLFLIAV 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 306 MTGMHRVFTPTIIQTIAETGKEGMvMPSEIGANLSLGGSSLAVAWKTKNPELRQTALAAAASAIMAGISEPALYGVAVRL 385
Cdd:PRK09586 314 VFGVHQGFIPVYFALMDSQGFNSL-FPILAMAGAGQVGAALALYWRAQKHSALRTQVKGAIIPGLLGVGEPLIYGVTLPR 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 386 KRPLIASLI----SGFICGAVAGMA---GLAS----HSMAAPGLFTSVQFFDPAnpmTIVWVFGVMgLAVVLSFVLTLLL 454
Cdd:PRK09586 393 MKPFVTACLggaaGGFFIGLIAWLGlpvGLNSvfgpSGLVALPLMTSAQGILPG---MAVYAGGLL-VAYVCGFIFTTLF 468
|
....*
gi 779869700 455 GFEDI 459
Cdd:PRK09586 469 GCKNV 473
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
8-82 |
2.12e-32 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 118.40 E-value: 2.12e-32
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 779869700 8 LANDVISALGGKENIVAVTHCMTRLRFVLKDESLTDAARLKSISGVLGVVRNDNQCQVIIGNTVSQAYREVVSLL 82
Cdd:cd00212 3 LAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGPGVADVYKEAIKLL 77
|
|
| PtsG2 |
COG1264 |
Phosphotransferase system IIB components [Carbohydrate transport and metabolism]; |
6-82 |
3.21e-31 |
|
Phosphotransferase system IIB components [Carbohydrate transport and metabolism];
Pssm-ID: 440876 [Multi-domain] Cd Length: 76 Bit Score: 114.83 E-value: 3.21e-31
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 779869700 6 AALANDVISALGGKENIVAVTHCMTRLRFVLKDESLTDAARLKSIsGVLGVVRNDNQCQVIIGNTVSQAYREVVSLL 82
Cdd:COG1264 1 KELAKDILEALGGKENIVSVDHCATRLRVTVKDPSKVDEAALKKL-GVKGVVKNGGQVQVIIGPGVDKVADEIEKLL 76
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
113-396 |
1.50e-29 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 117.83 E-value: 1.50e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 113 TMSPLIPAIIGGSMVKLLA-----MILEMTGVLPKGAPTLTILTVIGDGAFFFLPLMVAASAAVKF-KTNMSLAIAIAGV 186
Cdd:pfam02378 3 GFMPPIPLLIAGGILLGLGnlpndTTGLPAGGFTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLaGGDGVAGAAGLIG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 187 LVHPS---FIELMAKAAQG-EHVEFAFIPVTAVKYTYTVIPALVMTWCLSYIERWVDRITPAVTKNFLKPMLIVLIAAPL 262
Cdd:pfam02378 83 LLSFNlaaAISVALTAAGLsGGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKNITIKLPDSLPFFVGKRFVPIITGFV 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779869700 263 AIVLIGPLGIWIGSAIS----ALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRVFTPTIIQTIA-----------ETGKE 327
Cdd:pfam02378 163 TLLVIGPVLGLIWPAIQgglnALGLLLIIAGGILGGLIFGFLERLLWPFGLHGAFIAIFWFLPIggsnpianqqaYGAGA 242
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 779869700 328 GMVMPSEIGANLSLGGSSLAV---AWKTKNPELRQTALAAAASAIMAGISEPALYGVAVRLKRPL-IASLISG 396
Cdd:pfam02378 243 AHILTGGFDVMFGGPGATLALyaaAFLFKKSKVKKLLGSAALTPFLFGITEPLEFGFPFVLNPPFfIPAILAG 315
|
|
| PTS_EIIB |
pfam00367 |
phosphotransferase system, EIIB; |
11-41 |
5.79e-15 |
|
phosphotransferase system, EIIB;
Pssm-ID: 459785 [Multi-domain] Cd Length: 32 Bit Score: 68.55 E-value: 5.79e-15
10 20 30
....*....|....*....|....*....|.
gi 779869700 11 DVISALGGKENIVAVTHCMTRLRFVLKDESL 41
Cdd:pfam00367 2 EILEALGGKENIKSVDHCATRLRLTVKDESK 32
|
|
| PRK14905 |
PRK14905 |
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; ... |
5-82 |
1.12e-12 |
|
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Pssm-ID: 184898 [Multi-domain] Cd Length: 355 Bit Score: 69.29 E-value: 1.12e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 779869700 5 YAALANDVISALGGKENIVAVTHCMTRLRFVLKDESLTDAARLKSISGVLGVVRNDNQCQVIIG-NTVSQAYREVVSLL 82
Cdd:PRK14905 274 FSEIAIQLIDHLGGKDNISALTHCASRIRVMLRNDGHIDKSAIEKIDCVKGLFSIANQYQIILGaGIVEKIHEEMKALL 352
|
|
| PRK10110 |
PRK10110 |
PTS maltose transporter subunit IICB; |
12-84 |
4.87e-10 |
|
PTS maltose transporter subunit IICB;
Pssm-ID: 182245 [Multi-domain] Cd Length: 530 Bit Score: 61.67 E-value: 4.87e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 779869700 12 VISALGGKENIVAVTHCMTRLRFVLKDESLTDAARLKSiSGVLGVVR-NDNQCQVIIGNTVSQAYREVVSLLPA 84
Cdd:PRK10110 455 ILEALGGADNIVSLDNCITRLRLSVKDMSLVDVQALKD-NRAIGVVQlNQHNLQVVIGPQVQSVKDEMAGLMHT 527
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
30-81 |
2.82e-09 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 53.90 E-value: 2.82e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 779869700 30 TRLRFVLKDESLTDAARLKSISGVLGVVRNDNQCQVIIGN-TVSQAYREVVSL 81
Cdd:TIGR00826 1 TRLRLKTPGREKADEEAIAAGEGVKGVFTAAGQIQALGGTgNVNKVDACITRL 53
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
8-68 |
4.50e-09 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 53.52 E-value: 4.50e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 779869700 8 LANDVISALGGKENIVAVTHCMTRLRFVLKDESLTDAARLKSIsGVLGVVRNDNQCQVIIG 68
Cdd:TIGR00826 29 TAAGQIQALGGTGNVNKVDACITRLRVGVADVSKVDDAVLKKL-GAHGVNPLQRAVQVISG 88
|
|
| PRK09702 |
PRK09702 |
PTS sugar transporter subunit IIB; |
9-82 |
7.07e-07 |
|
PTS sugar transporter subunit IIB;
Pssm-ID: 77355 [Multi-domain] Cd Length: 161 Bit Score: 48.94 E-value: 7.07e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 779869700 9 ANDVISALGGKENIVAVTHCMTRLRFVLKDESLTDAARLKSISGVLGVVRNDNQCQVIIGNTVSQAYREVVSLL 82
Cdd:PRK09702 73 AAGILQALGGVGNISSINNCATRLRIALHDMSQTLDDEVFKKLGAHGVFRSGDAIQVIIGLHVSQLREQLDSLI 146
|
|
| PRK11089 |
PRK11089 |
PTS system glucose-specific transporter subunits IIBC; Provisional |
2-68 |
2.87e-06 |
|
PTS system glucose-specific transporter subunits IIBC; Provisional
Pssm-ID: 182955 [Multi-domain] Cd Length: 477 Bit Score: 49.71 E-value: 2.87e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 779869700 2 AKNYAALANDVISALGGKENIVAVTHCMTRLRFVLKDESLTDAARLKSIsGVLGVVRNDNQCQVIIG 68
Cdd:PRK11089 395 ATGTSEMAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKL-GAAGVVVAGSGVQAIFG 460
|
|
| PRK10255 |
PRK10255 |
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional |
7-68 |
2.66e-04 |
|
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Pssm-ID: 182338 [Multi-domain] Cd Length: 648 Bit Score: 43.71 E-value: 2.66e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 779869700 7 ALANDVISALGGKENIVAVTHCMTRLRFVLKDESLTDAARLKSIsGVLGVVR-NDNQCQVIIG 68
Cdd:PRK10255 391 QLATNYIAAVGGTDNLKAIDACITRLRLTVADSARVNDAMCKRL-GASGVVKlNKQTIQVIVG 452
|
|
| |
