NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|779885801|ref|WP_045364088|]
View 

DUF1090 domain-containing protein [Klebsiella aerogenes]

Protein Classification

DUF1090 domain-containing protein( domain architecture ID 10534440)

DUF1090 domain-containing protein similar to Escherichia coli YqjC

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF1090 pfam06476
Protein of unknown function (DUF1090); This family consists of several bacterial proteins of ...
 24-116 1.20e-25

Protein of unknown function (DUF1090); This family consists of several bacterial proteins of unknown function and is known as YqjC in E. coli.


:

Pssm-ID: 428965 [Multi-domain]  Cd Length: 109  Bit Score: 92.69  E-value: 1.20e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779885801   24 CQEKEQSIQREISYAEKHHNQHRIDGLNKALQEVRANCSDSKVRAEHQQKIAKQKAEVAERQRDLSEAKQKGDADKISKR 103
Cdd:pfam06476  17 CAAKRQAIEKQLSYAKAHGNQHRVAGLEKALAEVRAHCTDAGLRAERQQKVAEKREEVAEREAELAEAQAKGDADKIAKR 96

                          90
                  ....*....|...
gi 779885801  104 ERKLDEAQQELKA 116
Cdd:pfam06476  97 QRKLAEARQELKE 109
 
Name Accession Description Interval E-value
DUF1090 pfam06476
Protein of unknown function (DUF1090); This family consists of several bacterial proteins of ...
 24-116 1.20e-25

Protein of unknown function (DUF1090); This family consists of several bacterial proteins of unknown function and is known as YqjC in E. coli.


Pssm-ID: 428965 [Multi-domain]  Cd Length: 109  Bit Score: 92.69  E-value: 1.20e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779885801   24 CQEKEQSIQREISYAEKHHNQHRIDGLNKALQEVRANCSDSKVRAEHQQKIAKQKAEVAERQRDLSEAKQKGDADKISKR 103
Cdd:pfam06476  17 CAAKRQAIEKQLSYAKAHGNQHRVAGLEKALAEVRAHCTDAGLRAERQQKVAEKREEVAEREAELAEAQAKGDADKIAKR 96

                          90
                  ....*....|...
gi 779885801  104 ERKLDEAQQELKA 116
Cdd:pfam06476  97 QRKLAEARQELKE 109
PLN03086 PLN03086
PRLI-interacting factor K; Provisional
 64-116 7.62e-03

PRLI-interacting factor K; Provisional


Pssm-ID: 178635 [Multi-domain]  Cd Length: 567  Bit Score: 34.85  E-value: 7.62e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 779885801  64 SKVRAEHQQKIAKQKAEV-AERQRDL-SEAKQKGDADKISKRERKLDEAQQELKA 116
Cdd:PLN03086   8 AREKLEREQRERKQRAKLkLERERKAkEEAAKQREAIEAAQRSRRLDAIEAQIKA 62
 
Name Accession Description Interval E-value
DUF1090 pfam06476
Protein of unknown function (DUF1090); This family consists of several bacterial proteins of ...
 24-116 1.20e-25

Protein of unknown function (DUF1090); This family consists of several bacterial proteins of unknown function and is known as YqjC in E. coli.


Pssm-ID: 428965 [Multi-domain]  Cd Length: 109  Bit Score: 92.69  E-value: 1.20e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779885801   24 CQEKEQSIQREISYAEKHHNQHRIDGLNKALQEVRANCSDSKVRAEHQQKIAKQKAEVAERQRDLSEAKQKGDADKISKR 103
Cdd:pfam06476  17 CAAKRQAIEKQLSYAKAHGNQHRVAGLEKALAEVRAHCTDAGLRAERQQKVAEKREEVAEREAELAEAQAKGDADKIAKR 96

                          90
                  ....*....|...
gi 779885801  104 ERKLDEAQQELKA 116
Cdd:pfam06476  97 QRKLAEARQELKE 109
PLN03086 PLN03086
PRLI-interacting factor K; Provisional
 64-116 7.62e-03

PRLI-interacting factor K; Provisional


Pssm-ID: 178635 [Multi-domain]  Cd Length: 567  Bit Score: 34.85  E-value: 7.62e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 779885801  64 SKVRAEHQQKIAKQKAEV-AERQRDL-SEAKQKGDADKISKRERKLDEAQQELKA 116
Cdd:PLN03086   8 AREKLEREQRERKQRAKLkLERERKAkEEAAKQREAIEAAQRSRRLDAIEAQIKA 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH