|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
8-331 |
5.39e-77 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 238.47 E-value: 5.39e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 8 NAAASGRQQIFDFLYRWGMLLTVVALVAVFGLASDSFLDPNNIINILRSIAIVTVIAIGVSISLTIGGFDLSVGSTASLA 87
Cdd:COG1172 3 ATTTTARSLLRRLLPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALS 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 88 NALVVSLFVWHGLGTTESILITLALCTLVGLFNAFLIVILRIPDMLATLASLFVIQGVAMTYSYGGSITenmvlpsgdma 167
Cdd:COG1172 83 GVVAALLLVALGLPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPIS----------- 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 168 egTIPAAFSLLGQ-----VPTIVIVMLVVTVLAQLGLSLTTHGRRMYAIGGNPEAARLSGIRTTRYKVAAYVIASLLAGL 242
Cdd:COG1172 152 --GLPDAFRALGQgsllgIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGL 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 243 GGILLASRIGSSQVNAGGGYLMDAVAAAWIGFSLAGSGKPNALGTLVGAVILGVLSNGLVMLSVPYYAMDIIKGLVLAVA 322
Cdd:COG1172 230 AGILLAARLGSAQPNAGSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLA 309
|
....*....
gi 779954454 323 LAITYIQKR 331
Cdd:COG1172 310 VLLDRLRRR 318
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
57-326 |
1.05e-62 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 199.94 E-value: 1.05e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 57 IAIVTVIAIGVSISLTIGGFDLSVGSTASLANALVVSLFVWHGLGTTESILITLALCTLVGLFNAFLIVILRIPDMLATL 136
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 137 ASLFVIQGVAMTYSYGGSItenmvlpSGDMAEGTIPAAFSLLGQVPTIVIVMLVVTVLAQLGLSLTTHGRRMYAIGGNPE 216
Cdd:cd06579 81 GTMFILRGLALLITGGRPI-------SGLPPLFSFFLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 217 AARLSGIRTTRYKVAAYVIASLLAGLGGILLASRIGSSQVNAGGGYLMDAVAAAWIGFSLAGSGKPNALGTLVGAVILGV 296
Cdd:cd06579 154 AARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGV 233
|
250 260 270
....*....|....*....|....*....|
gi 779954454 297 LSNGLVMLSVPYYAMDIIKGLVLAVALAIT 326
Cdd:cd06579 234 LNNGLNLLGVSSFWQQIVKGAILLLAVALD 263
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
6-325 |
6.21e-39 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 140.24 E-value: 6.21e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 6 SVNAAASGRQQIFDFLYRWGMLLTVVALVAVFGLASDSFLDPNNIINILRSIAIVTVIAIGVSISLTIGGFDLSVGSTAS 85
Cdd:PRK09512 1 TTQTVSGRRYFTKAWLIEQKSLIALLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 86 LANALVVSLfVWHGLGTTESILITLALCTLVGLFNAFLIVILRIPDMLATLASLFVIQGVAMTYSYGGSITENMvlpsGD 165
Cdd:PRK09512 81 LTGAVAASI-VGIEVNALVAVPAALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPINTGF----TD 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 166 MAEgtipaAFSLLGQ-----VPTIVIVMLVVTVLAQLGLSLTTHGRRMYAIGGNPEAARLSGIRTTRYKVAAYVIASLLA 240
Cdd:PRK09512 156 NAD-----LFGWFGIgrplgIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLA 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 241 GLGGILLASRIGSSQVNAGGGYLMDAVAAAWIG-FSLAGsGKPNALGTLVGAVILGVLSNGLVMLSVPYYAMDIIKGLVL 319
Cdd:PRK09512 231 ALAGIIEVARLSSAQPTAGTGYELDAIAAVVLGgTSLAG-GKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVI 309
|
....*.
gi 779954454 320 AVALAI 325
Cdd:PRK09512 310 LLAVLV 315
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
25-331 |
5.21e-27 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 109.09 E-value: 5.21e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 25 GMLLTVVALVAVFGLASDS-FLDPNNIINILRSIAIVTVIAIGVSISLTIGGFDLSVGSTASLANALVVSLFVWHGLGTT 103
Cdd:NF040906 6 GMLIALVAIVVLFQILTGGiLLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNWGMPWW 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 104 ESILITLALCTLVGLFNAFLIVILRIPDMLATLASLFVIQGVAMTYSYGGSITenmVLPSG--DMAEGTIPAAFS----- 176
Cdd:NF040906 86 LAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIG---PFPDGfqKISSGFLPDLFGgtglh 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 177 ----LLGQV-----------------------------------------------------PTIVIVMLVVTVLAQLGL 199
Cdd:NF040906 163 lltlLLGVLaaaalvwsqlrgrrrrikyglevepmalfiaklvliaaailfftyllasyrglPNVLIILGVLILVYSFVT 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 200 SLTTHGRRMYAIGGNPEAARLSGIRTTRYKVAAYVIASLLAGLGGILLASRIGSSQVNAGGGYLMDAVAAAWIGFSLAGS 279
Cdd:NF040906 243 NRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASG 322
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 779954454 280 GKPNALGTLVGAVILGVLSNGLVMLSVPYYAMDIIKGLVLAVALAITYIQKR 331
Cdd:NF040906 323 GVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFDVYNKR 374
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
49-323 |
3.64e-15 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 74.22 E-value: 3.64e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 49 NIINILRSIAIVTVIAIGVSISLTI-GGFDLSVGSTASLANALVVSLFVWHGLGTTESILITLALCTLVGLFNAFLIVIL 127
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYGIaGVINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 128 RIPDMLATLASLFVIQGVAMTYsYGGSITENMVLPSGDMAEGTIPAAFSLLGQVptIVIVMLVVTVLAQLGLSLTTHGRR 207
Cdd:pfam02653 81 KINEVIITLLLNLAALGLALFL-VTGILGGEGGTSGITGPSGFPGAFLSFAFAF--IFLLALLLVLALWLLLYRTKFGRA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 208 MYAIGGNPEAARLSGIRTTRYKVAAYVIASLLAGLGGILLASRIGSSQV-NAGGGYLMDAVAAAWIGfslagsGKPNALG 286
Cdd:pfam02653 158 LRAVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPsNFGVGLGLDAIAAVVLG------GAGSPIG 231
|
250 260 270
....*....|....*....|....*....|....*...
gi 779954454 287 TLVGAVILGVLSN-GLVMLSVPYYAMDIIKGLVLAVAL 323
Cdd:pfam02653 232 VVIGSLIIGLVQSlGLGALGSPPELSLLVLGALLILVL 269
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
8-331 |
5.39e-77 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 238.47 E-value: 5.39e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 8 NAAASGRQQIFDFLYRWGMLLTVVALVAVFGLASDSFLDPNNIINILRSIAIVTVIAIGVSISLTIGGFDLSVGSTASLA 87
Cdd:COG1172 3 ATTTTARSLLRRLLPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALS 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 88 NALVVSLFVWHGLGTTESILITLALCTLVGLFNAFLIVILRIPDMLATLASLFVIQGVAMTYSYGGSITenmvlpsgdma 167
Cdd:COG1172 83 GVVAALLLVALGLPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPIS----------- 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 168 egTIPAAFSLLGQ-----VPTIVIVMLVVTVLAQLGLSLTTHGRRMYAIGGNPEAARLSGIRTTRYKVAAYVIASLLAGL 242
Cdd:COG1172 152 --GLPDAFRALGQgsllgIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGL 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 243 GGILLASRIGSSQVNAGGGYLMDAVAAAWIGFSLAGSGKPNALGTLVGAVILGVLSNGLVMLSVPYYAMDIIKGLVLAVA 322
Cdd:COG1172 230 AGILLAARLGSAQPNAGSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLA 309
|
....*....
gi 779954454 323 LAITYIQKR 331
Cdd:COG1172 310 VLLDRLRRR 318
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
57-326 |
1.05e-62 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 199.94 E-value: 1.05e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 57 IAIVTVIAIGVSISLTIGGFDLSVGSTASLANALVVSLFVWHGLGTTESILITLALCTLVGLFNAFLIVILRIPDMLATL 136
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 137 ASLFVIQGVAMTYSYGGSItenmvlpSGDMAEGTIPAAFSLLGQVPTIVIVMLVVTVLAQLGLSLTTHGRRMYAIGGNPE 216
Cdd:cd06579 81 GTMFILRGLALLITGGRPI-------SGLPPLFSFFLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 217 AARLSGIRTTRYKVAAYVIASLLAGLGGILLASRIGSSQVNAGGGYLMDAVAAAWIGFSLAGSGKPNALGTLVGAVILGV 296
Cdd:cd06579 154 AARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGV 233
|
250 260 270
....*....|....*....|....*....|
gi 779954454 297 LSNGLVMLSVPYYAMDIIKGLVLAVALAIT 326
Cdd:cd06579 234 LNNGLNLLGVSSFWQQIVKGAILLLAVALD 263
|
|
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
1-325 |
2.02e-50 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 172.22 E-value: 2.02e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 1 MSKALSVNAAASGRQQIFDFLYR-WGMLLTVVALVAVFGLASD-SFLDPNNIINILRSIAIVTVIAIGVSISLTIGGFDL 78
Cdd:COG4214 1 MSTTAAPGGAVRSLRRLLGGDLRsLGMIIALVVIWIVFQILTGgTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 79 SVGSTASLANALVVSLFVWHGLGTTESILITLALCTLVGLFNAFLIVILRIPDMLATLASLFVIQGVAMTYSYGGSI--- 155
Cdd:COG4214 81 SVGSVSGFVGAVAAVLMVNWGLPWWLAILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGGTIapf 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 156 --------TENM--VLPSGDMAEGTIPAAFSLLGQ-------------------------------------------VP 182
Cdd:COG4214 161 dptfqaigNGFLpdILGTLSWVLGAVAVAAYVALQlrsrrrrrryglpveplwlfvlklallavlilgavyllnsyrgIP 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 183 TIVIVMLVVTVLAQLGLSLTTHGRRMYAIGGNPEAARLSGIRTTRYKVAAYVIASLLAGLGGILLASRIGSSQVNAGGGY 262
Cdd:COG4214 241 IVVLILLVLVVVYTFVLTRTVFGRHIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGTGF 320
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 779954454 263 LMDAVAAAWI-GFSLAGsGKPNALGTLVGAVILGVLSNGLVMLSVPYYAMDIIKGLVLAVALAI 325
Cdd:COG4214 321 ELDAIAAAVIgGTSLFG-GVGTVYGAVIGALVMGSLNNGMSLLGVDSDWQQIVKGLVLLLAVAF 383
|
|
| MglC |
COG4211 |
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and ... |
14-331 |
1.59e-41 |
|
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443358 Cd Length: 336 Bit Score: 147.35 E-value: 1.59e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 14 RQQIFDFLYRWGMLLTVVALVAVFGLASDSFLDPNNIINILRSIAIVTVIAIGVSISLTIGGFDLSVGSTASLANALVVS 93
Cdd:COG4211 6 KKKIKNFLLNNAIYIVLLLLIIAIIIINPNFLSLRNIRNILTQSSTRMIIALGVAGLIVTQGTDLSAGRMVGLAAVISAS 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 94 LF--------VWHGLGTTE---SILITLALCTLVGLFNAFLIVILRIPDMLATLASLFVIQGVAMTY-------SYGGSI 155
Cdd:COG4211 86 LLqsgdyagkFFPNLPELPiivPILIAIAIGALFGLINGFFVAKLKVPPFIATLGTMLIVYGINSIYtdrpgaqPIGGLD 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 156 TENMVLPSGDMAEGTIPaafsllgqVPTIVIVMLVVTVLAQLGLSLTTHGRRMYAIGGNPEAARLSGIRTTRYKVAAYVI 235
Cdd:COG4211 166 ESFTNFAQGSINIGGFG--------IPYLIIYAIIVIVIMWFIWNKTKFGKNMYAVGGNPEAAEVSGVNVFKTLIIVYAL 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 236 ASLLAGLGGILLASRIGSSQVNAGGGYLMDAVAAAWI-GFSLAGsGKPNALGTLVGAVILGVLSNGLVMLSVPYYAMDII 314
Cdd:COG4211 238 AGALYGFAGFLEAARTGSATNNYGNGYELDAIAACVVgGVSFSG-GIGKISGVVIGVLIFTVINYGLTFIGVNPYWQYII 316
|
330 340
....*....|....*....|
gi 779954454 315 KGLVLAVALAI---TYIQKR 331
Cdd:COG4211 317 KGLIIIAAVALdirKYLKKK 336
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
6-325 |
6.21e-39 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 140.24 E-value: 6.21e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 6 SVNAAASGRQQIFDFLYRWGMLLTVVALVAVFGLASDSFLDPNNIINILRSIAIVTVIAIGVSISLTIGGFDLSVGSTAS 85
Cdd:PRK09512 1 TTQTVSGRRYFTKAWLIEQKSLIALLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 86 LANALVVSLfVWHGLGTTESILITLALCTLVGLFNAFLIVILRIPDMLATLASLFVIQGVAMTYSYGGSITENMvlpsGD 165
Cdd:PRK09512 81 LTGAVAASI-VGIEVNALVAVPAALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPINTGF----TD 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 166 MAEgtipaAFSLLGQ-----VPTIVIVMLVVTVLAQLGLSLTTHGRRMYAIGGNPEAARLSGIRTTRYKVAAYVIASLLA 240
Cdd:PRK09512 156 NAD-----LFGWFGIgrplgIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLA 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 241 GLGGILLASRIGSSQVNAGGGYLMDAVAAAWIG-FSLAGsGKPNALGTLVGAVILGVLSNGLVMLSVPYYAMDIIKGLVL 319
Cdd:PRK09512 231 ALAGIIEVARLSSAQPTAGTGYELDAIAAVVLGgTSLAG-GKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVI 309
|
....*.
gi 779954454 320 AVALAI 325
Cdd:PRK09512 310 LLAVLV 315
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
11-325 |
8.68e-32 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 121.33 E-value: 8.68e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 11 ASGRQQIFDFLYRWGMLLTVVALVAVFGLASDSFLDPNNIINILRSIAIVTVIAIGVSISLTIGGFDLSVGSTASLANAL 90
Cdd:PRK09478 3 ALNKKSFLTYLKEGGIYVVLLVLLAIIIIQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 91 VVSLF--------VWHGLGTTE---SILITLALCTLVGLFNAFLIVILRIPDMLATLASLFVIQGVAMTY--SYGGSite 157
Cdd:PRK09478 83 AATLLqsmdnankVFPELATMPialVILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTMIIVYGINSLYydFVGAS--- 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 158 nmvlPSGDMAEG--TIPAAFSLLG--QVPTIVIVMLVVTVLAQLGLSLTTHGRRMYAIGGNPEAARLSGIRTTRYKVAAY 233
Cdd:PRK09478 160 ----PISGFDSGfsTFAQGFVALGsfRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIY 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 234 VIASLLAGLGGILLASRIGSSQVNAGGGYLMDAVAAAWIGFSLAGSGKPNALGTLVGAVILGVLSNGLVMLSVPYYAMDI 313
Cdd:PRK09478 236 ALSGVFYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYI 315
|
330
....*....|..
gi 779954454 314 IKGLVLAVALAI 325
Cdd:PRK09478 316 IKGAIIIFAVAL 327
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
6-322 |
2.14e-29 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 114.77 E-value: 2.14e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 6 SVNAAASGRQQIFDFLYRWGMLLTVVALVAVFGLASDSFLDPNNIINILRSIAIVTVIAIGVSISLTIGGFDLSVGSTas 85
Cdd:PRK11285 12 AAAAPPKSRFSLWRIWDQYGMLVVFAVLFIACSLFVPNFASFINMKGLGLAISMIGMVACTMLFCLASGDFDLSVASV-- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 86 LANALVVSLFVwhgLGTTESILI----TLALCTLVGLFNAFLIVILRIPDMLATLASLFVIQGVAMTYSYGGSItenmvl 161
Cdd:PRK11285 90 VAFAGVVTAVV---INATESLWLgvaaGLLLGAAVGLVNGFVIARLKINALITTLATMQIVRGLAYIISDGKAV------ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 162 psGDMAEGTIPAAFSLLGQVPTIVIVMLVVTVLAQLGLSLTTHGRRMYAIGGNPEAARLSGIRTTRYKVAAYVIASLLAG 241
Cdd:PRK11285 161 --GISDERFFALGYANFFGVPAPIWLTVACFVVFGFLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSA 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 242 LGGILLASRIGSSQVNAGGGYLMDAVAAAWI-GFSLAGsGKPNALGTLVGAVILGVLSNGLVMLSVPYYAMDIIKGLVLA 320
Cdd:PRK11285 239 LAGVILASRMTSGQPMTSIGFELIVISACVLgGVSLKG-GIAKISGVVAGVLILGTVENAMNLLNISPFYQYVVRGLILL 317
|
..
gi 779954454 321 VA 322
Cdd:PRK11285 318 AA 319
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
19-325 |
1.47e-27 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 109.48 E-value: 1.47e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 19 DFLYRWGMLLTVVALVAVFG-LASDSFLDPNNIINILRSIAIVTVIAIGVSISLTIGGFDLSVGSTASLANALVVSLFVW 97
Cdd:PRK09699 7 LFWDKYGTFFILAIIVAIFGsLSPEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 98 HGLGTTESILITLALCTLVGLFNAFLIVILRIPDMLATLASLFVIQGVAMTYSYGGSItenmvlpSGDMAEGTIPAAFSL 177
Cdd:PRK09699 87 GVDPFLAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSV-------YGFSFDFVNFFAASV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 178 LGqVPTIVIVMLVVTVLAQLGLSLTTHGRRMYAIGGNPEAARLSGIRTTRYKVAAYVIASLLAGLGGILLASRIGSSQVN 257
Cdd:PRK09699 160 IG-IPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPL 238
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 779954454 258 AGGGYLMDAVAAAWIGFSLAGSGKPNALGTLVGAVILGVLSNGLVMLSVPYYAMDIIKGLVLAVALAI 325
Cdd:PRK09699 239 AGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVAL 306
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
25-331 |
5.21e-27 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 109.09 E-value: 5.21e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 25 GMLLTVVALVAVFGLASDS-FLDPNNIINILRSIAIVTVIAIGVSISLTIGGFDLSVGSTASLANALVVSLFVWHGLGTT 103
Cdd:NF040906 6 GMLIALVAIVVLFQILTGGiLLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNWGMPWW 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 104 ESILITLALCTLVGLFNAFLIVILRIPDMLATLASLFVIQGVAMTYSYGGSITenmVLPSG--DMAEGTIPAAFS----- 176
Cdd:NF040906 86 LAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIG---PFPDGfqKISSGFLPDLFGgtglh 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 177 ----LLGQV-----------------------------------------------------PTIVIVMLVVTVLAQLGL 199
Cdd:NF040906 163 lltlLLGVLaaaalvwsqlrgrrrrikyglevepmalfiaklvliaaailfftyllasyrglPNVLIILGVLILVYSFVT 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 200 SLTTHGRRMYAIGGNPEAARLSGIRTTRYKVAAYVIASLLAGLGGILLASRIGSSQVNAGGGYLMDAVAAAWIGFSLAGS 279
Cdd:NF040906 243 NRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASG 322
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 779954454 280 GKPNALGTLVGAVILGVLSNGLVMLSVPYYAMDIIKGLVLAVALAITYIQKR 331
Cdd:NF040906 323 GVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFDVYNKR 374
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
27-323 |
8.19e-26 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 105.20 E-value: 8.19e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 27 LLTVVALVAVFGLASDSFLDPNNIINILRSIAIVTVIAIGVSISLTIGGFDLSVGSTASLAnALVVSLFVWHGLGTTESI 106
Cdd:PRK15432 14 LLAIVLLFVLLGFLDRQYLSLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGLC-AVLVGMLLNAGYSLPVAC 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 107 LITLALCTLVGLFNAFLIVILRIPDMLATLASLFVIQGVaMTYSYGGSITENmvLPSgDMAEGTIPAafsLLGQVPTIVI 186
Cdd:PRK15432 93 LATLLLGLLAGFFNGVLVAWLRIPAIVATLGTLGLYRGI-MLLWTGGKWIEG--LPA-ELKQLSAPI---LLGISPIGWL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 187 VMLVVTVLAQLgLSLTTHGRRMYAIGGNPEAARLSGIRTTRYKVAAYVIASLLAGLGGILLASRIGSSQVNAGGGYLMDA 266
Cdd:PRK15432 166 TLILILAMAWL-LAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGLEMKA 244
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 779954454 267 VAAAWI-GFSLAGsGKPNALGTLVGAVILGVLSNGLVMLSVPYYAMDIIKGLVLAVAL 323
Cdd:PRK15432 245 IAACVLgGISLLG-GSGTIIGAVLGAYFLTQIDSVLVLLRIPAWWNDFIAGLVLLGVL 301
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
26-297 |
4.68e-20 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 88.86 E-value: 4.68e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 26 MLLTVVALVAVFGLAS---DSFLDPNNIINILRSIAIVTVIAIGVSISLTIGGFDLSVGSTASLANALVVSLFVWHGLGT 102
Cdd:PRK11618 8 LMITIGVFVLGYLFCLvqfPGFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLIGDYGWSP 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 103 TESILITLALCTLVGLFNAFLIVILRIPDMLATLASLFVIQGVAMTYSYGgSITENMVLPSgDMAEGTIPAAFSllGQVP 182
Cdd:PRK11618 88 LLAFPLVLVMGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVSFLVSEE-SIPINHPFYD-TLSSLAWKLPGG--GRLS 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 183 TIVIVMLVVTVLAQLGLSLTTHGRRMYAIGGNPEAARLSGIRTTRYKVAAYVIASLLAGLGGILLASRIGSSQVNAGGGY 262
Cdd:PRK11618 164 AMALIMLAVVAIGIFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYALAAVGV 243
|
250 260 270
....*....|....*....|....*....|....*
gi 779954454 263 LMDAVAAAWIGFSLAGSGKPNALGTLVGAVILGVL 297
Cdd:PRK11618 244 ELDAIAAVVIGGTLLTGGVGTVLGTLFGVLIQGLI 278
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
23-323 |
3.20e-17 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 81.03 E-value: 3.20e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 23 RWGMLLTVVAL----VAVFGLASDSFLDPNNIINILRSIAIVTVIAIGVSISLTIGGFDLSVGSTASLAnALVVSLFVWH 98
Cdd:PRK15038 4 RYGWELALAALlvieILAFGLINPRMLDINVLLFSTSDFICIGIVALPLTMVIVSGGIDISFGSTIGLC-AIALGVLFQS 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 99 GLGTTESILITLALCTLVGLFNAFLIVILRIPDMLATLASLFVIQGVAMTYSyggsiteNMVLPSGDMAEGTIPAAF--- 175
Cdd:PRK15038 83 GVPMPLAILLTLLLGALCGLINAGLIIYTGVNPLVITLGTLYLFGGSALLLS-------GMAGATGYEGIGGFPMAFtdf 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 176 ---SLLGqVPTIVIVMLVVTVLAQLGLSLTTHGRRMYAIGGNPEAARLSGIRTTRYKVAAYVIASLLAGLGGILLASRIG 252
Cdd:PRK15038 156 anlDVLG-LPVPLIIFLICLLVFWLLMHRTHAGRNVFLIGQSPRVALYSAIPVNRTLCALYAMTGLASAIAAVLLVSYFG 234
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 779954454 253 SSQVNAGGGYLMDAVAAAWIGFSLAGSGKPNALGTLVGAVILGVLSNGLVMLSVPYYAMDIIKGLVLAVAL 323
Cdd:PRK15038 235 SARSDLGASFLMPAITAVVLGGANIYGGSGSIIGTALAVLLVGYLQQGLQMAGVPNQISSALSGALLIVVV 305
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
63-323 |
1.02e-16 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 78.47 E-value: 1.02e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 63 IAIGVSISLTIGGFDLSVGSTASLANALVVSLFVWHGLGTTESILITLALCTLVGLFNAFLIVILRIPDMLATLASLFVI 142
Cdd:cd06574 7 LALGVYIVFRILGFPDLTVDGSFPLGAAVAAILIVAGYNPWLALIAAILAGAAAGLVTGFLHTRLKINGLLAGILIMIGL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 143 QGVAMTYSYGGSITenmVLPSGDMAEGTIPAAFSLLGQVPTIVIVMLVVTVLAQLGLSLTTHGRRMYAIGGNPEAARLSG 222
Cdd:cd06574 87 YSINLRIMGGPNIP---LGTRDTLLGLLLLFGISGTLSIPVVLLLIVLLVLFLVIWFLRTKLGLAMRATGDNPDMARSLG 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 223 IRTTRYKVAAYVIASLLAGLGGILLASRIGSSQVNAGGGYLMDAVAAAWIGFSLAGSGKPNA--LGTLVGAVILGVLSNG 300
Cdd:cd06574 164 INVDRTRILGLVISNALAALGGALYAQYQGFADVNMGIGTGVIGLAAVIIGGAIVGRRTIKAsiLGVIIGAILYRIALAL 243
|
250 260
....*....|....*....|...
gi 779954454 301 LVMLSVPYYAMDIIKGLVLAVAL 323
Cdd:cd06574 244 ALGSGLIPSDLKLITAGVIVLVL 266
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
49-323 |
3.64e-15 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 74.22 E-value: 3.64e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 49 NIINILRSIAIVTVIAIGVSISLTI-GGFDLSVGSTASLANALVVSLFVWHGLGTTESILITLALCTLVGLFNAFLIVIL 127
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYGIaGVINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 128 RIPDMLATLASLFVIQGVAMTYsYGGSITENMVLPSGDMAEGTIPAAFSLLGQVptIVIVMLVVTVLAQLGLSLTTHGRR 207
Cdd:pfam02653 81 KINEVIITLLLNLAALGLALFL-VTGILGGEGGTSGITGPSGFPGAFLSFAFAF--IFLLALLLVLALWLLLYRTKFGRA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 208 MYAIGGNPEAARLSGIRTTRYKVAAYVIASLLAGLGGILLASRIGSSQV-NAGGGYLMDAVAAAWIGfslagsGKPNALG 286
Cdd:pfam02653 158 LRAVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPsNFGVGLGLDAIAAVVLG------GAGSPIG 231
|
250 260 270
....*....|....*....|....*....|....*...
gi 779954454 287 TLVGAVILGVLSN-GLVMLSVPYYAMDIIKGLVLAVAL 323
Cdd:pfam02653 232 VVIGSLIIGLVQSlGLGALGSPPELSLLVLGALLILVL 269
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
58-321 |
5.28e-07 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 50.12 E-value: 5.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 58 AIVTVIAIGVSISLTIGG-FDLSVGSTASLANALVVSLFVWHGLGTTESILITLALCTLVG-LFNAFLIVILR---IPDM 132
Cdd:cd06582 6 AIYALIALGLTLIFGVTGvINFAHGEFYMLGAYVAYTLLVALGLPFWLALLLALLVAALLGvLLERLVLRPLRgapLLTL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 133 LATLASLFVIQGVAMTYSYGGSITENMVLPSGDMAEGTIpaafSLLGQVPTIVIVMLVVTVLAQLGLSLTTHGRRMYAIG 212
Cdd:cd06582 86 LITFGGLLILLQGLLLIFGGDPRVPPPPLLSGSVELGGV----TIPPYRLFIIAVALVLLAALYLFLRRTRLGRAIRAVA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 213 GNPEAARLSGIRTTRYKVAAYVIASLLAGLGGILLASRIGSSqVNAGGGYLMDAVAAAWIGfslaGSGkpNALGTLVGAV 292
Cdd:cd06582 162 QNPEAARLLGINVRRVFALTFALGAALAGLAGVLLAPITGVS-PTMGLLLLLKAFAAVVLG----GLG--SIPGAVVGGL 234
|
250 260
....*....|....*....|....*....
gi 779954454 293 ILGVLSNGLVMLSVPYYAMDIIKGLVLAV 321
Cdd:cd06582 235 LLGLAESLAAAYLSSGYKDAVAFVLLILV 263
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
48-325 |
3.06e-06 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 48.14 E-value: 3.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 48 NNIINILRSIAIVTVIAIGVSISLTIGGF-DLSVGSTASLANALVVSLFVWHGLGTTESILITLALCTLVGLFnAFLIVI 126
Cdd:COG0559 6 QQLLNGLSLGSIYALIALGLTLIFGVMGViNFAHGEFVMLGAYVAYTLATLLGLPLWLALLLAVLVAALLGVL-LERLVI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 127 LRIPD------MLATLASLFVIQGVAMTYsYGgsiTENMVLPSGdmaegtIPAAFSLLG-QVPTIVIVMLVVTVLAQLGL 199
Cdd:COG0559 85 RPLRGapplalLLATIGLSLVLQGLVLLI-FG---ADPRSFPAL------LSGSVELGGvSIPAYRLFIIVVALVLLAAL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 200 SL----TTHGRRMYAIGGNPEAARLSGIRTTRYKVAAYVIASLLAGLGGILLASrIGSSQVNAGGGYLMDAVAAAWIGfs 275
Cdd:COG0559 155 WLflrrTRLGLAMRAVAQNREAARLMGINVDRVIALTFALGAALAGLAGVLLAP-IYSVSPTMGFLLGLKAFAAVVLG-- 231
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 779954454 276 laGSGkpNALGTLVGAVILGVLSNglvmLSVPYYAMDIIKGLVLAVALAI 325
Cdd:COG0559 232 --GLG--SIPGAVVGGLLLGLAES----LGAAYLPSGYKDVVAFVLLILV 273
|
|
| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
185-328 |
5.41e-06 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 47.42 E-value: 5.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 185 VIVMLVVTVLAQLGLSLTTHGRRMYAIGGNPEAARLSGIRTTRYKVAAYVIASLLA-GLGGILLASRIGSSQVNAGGGYL 263
Cdd:COG4603 200 LLIALLAAVLVWVLLNRTTLGYELRAVGLNPRAARYAGINVKRLIVLAMLISGALAgLAGAVEVLGVQGRLTPGFSPGYG 279
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 779954454 264 MDAVAAAWIGFSlagsgkpNALGTLVGAVILGVLSNG----LVMLSVPYYAMDIIKGLVLAVALAITYI 328
Cdd:COG4603 280 FTGIAVALLGRN-------NPLGIILAALLFGALYVGgdamQRALGVPSEIVDVIQGLIILFVLAADFL 341
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
184-323 |
6.83e-05 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 43.58 E-value: 6.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 184 IVIVMLVVTVLAQLGLSLTTHGRRMYAIGGNPEAARLSGIRTTRYKVAAYVIASLLAGLG-GILLASRIGSSQVNAGGGY 262
Cdd:cd06580 97 LLLLALLLVILVWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAgAYLVLGVQGRFTEGMSAGY 176
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 779954454 263 LMDAVAAAWIGFSlagsgkpNALGTLVGAVILGVLSNGL----VMLSVPYYAMDIIKGLVLAVAL 323
Cdd:cd06580 177 GFIAIAVALLGRW-------NPLGILLAALLFGALEAGGialqRSGGVPSELVQVLPGIIVLFVL 234
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
184-237 |
2.65e-04 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 41.99 E-value: 2.65e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 779954454 184 IVIVMLVVTVLAQLGLSLTTHGRRMYAIGGNPEAARLSGIRTTRYKVAAYVIAS 237
Cdd:COG4177 137 LVLALLVLVLLLLRRLVRSRFGRALRAIRENEIAAEALGINVTRYKLLAFVLSA 190
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
94-237 |
2.76e-04 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 42.05 E-value: 2.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779954454 94 LFVWHGLGTTESILITLALCTLVGLFNAFLIVILR-IPDMLATLASLFVIQGVAMTYSY--GGSI-TENMVLPSGDMAEG 169
Cdd:cd06581 39 LATRLGLPFWLALLAAGLVAALVGLLLGLPALRLRgVYFAIATLAFAEIVRLLALNWSSltGGSNgLSGIPPPLLGGLLL 118
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 779954454 170 TIPAAFSLLgqvptiVIVMLVVTVLAQLGLSLTTHGRRMYAIGGNPEAARLSGIRTTRYKVAAYVIAS 237
Cdd:cd06581 119 SSPLAFYYL------VLAVLLLVLLLLRRLVRSPFGRALRAIRENEVAAEALGINVTRYKLLAFALSA 180
|
|
| |
