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Conserved domains on  [gi|780221778|ref|WP_045524868|]
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MULTISPECIES: dTMP kinase [Aeromonas]

Protein Classification

dTMP kinase( domain architecture ID 11414784)

dTMP (thymidylate) kinase catalyzes the reversible phosphorylation of deoxythymidine monophosphate (dTMP) to deoxythymidine diphosphate (dTDP) using ATP as a phosphoryl donor

CATH:  3.40.50.300
EC:  2.7.4.9
PubMed:  23394555
SCOP:  4004030

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Tmk COG0125
Thymidylate kinase [Nucleotide transport and metabolism]; Thymidylate kinase is part of the ...
1-205 7.11e-86

Thymidylate kinase [Nucleotide transport and metabolism]; Thymidylate kinase is part of the Pathway/BioSystem: Thymidylate biosynthesis


:

Pssm-ID: 439895 [Multi-domain]  Cd Length: 206  Bit Score: 252.39  E-value: 7.11e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780221778   1 MSKFIVIEGLEGAGKSSAVRYVTDYLQAHGVaRIECTREPGGTPLAERMRAIVKEvHDERLTVEAELLLMYASRVQLVET 80
Cdd:COG0125    2 KGKFIVFEGIDGSGKSTQIKLLAEYLEARGY-DVVLTREPGGTPLGEAIRELLLG-DNEDMSPRTELLLFAADRAQHVEE 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780221778  81 RIKPALADGIWVVGDRHDLSSQAYQGGGRGIDANLIGAIKRAVLGDFKPDLTLYLDIDPAIGLQRARHRG-ELDRIELEQ 159
Cdd:COG0125   80 VIRPALAAGKIVICDRYVDSSLAYQGGGRGLDLEWIRQLNRFATGGLKPDLTILLDVPPEVALARARARGgELDRFESED 159
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 780221778 160 IGFFERTRQRYLELAAAD-DSIQVIDAGLPPEQVKAAIEAALEHYLA 205
Cdd:COG0125  160 LEFHERVREGYLELAAKEpERIVVIDASQSIEEVHAEIREALAELLK 206
 
Name Accession Description Interval E-value
Tmk COG0125
Thymidylate kinase [Nucleotide transport and metabolism]; Thymidylate kinase is part of the ...
1-205 7.11e-86

Thymidylate kinase [Nucleotide transport and metabolism]; Thymidylate kinase is part of the Pathway/BioSystem: Thymidylate biosynthesis


Pssm-ID: 439895 [Multi-domain]  Cd Length: 206  Bit Score: 252.39  E-value: 7.11e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780221778   1 MSKFIVIEGLEGAGKSSAVRYVTDYLQAHGVaRIECTREPGGTPLAERMRAIVKEvHDERLTVEAELLLMYASRVQLVET 80
Cdd:COG0125    2 KGKFIVFEGIDGSGKSTQIKLLAEYLEARGY-DVVLTREPGGTPLGEAIRELLLG-DNEDMSPRTELLLFAADRAQHVEE 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780221778  81 RIKPALADGIWVVGDRHDLSSQAYQGGGRGIDANLIGAIKRAVLGDFKPDLTLYLDIDPAIGLQRARHRG-ELDRIELEQ 159
Cdd:COG0125   80 VIRPALAAGKIVICDRYVDSSLAYQGGGRGLDLEWIRQLNRFATGGLKPDLTILLDVPPEVALARARARGgELDRFESED 159
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 780221778 160 IGFFERTRQRYLELAAAD-DSIQVIDAGLPPEQVKAAIEAALEHYLA 205
Cdd:COG0125  160 LEFHERVREGYLELAAKEpERIVVIDASQSIEEVHAEIREALAELLK 206
TMPK cd01672
Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the ...
3-201 3.16e-75

Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).


Pssm-ID: 238835  Cd Length: 200  Bit Score: 225.23  E-value: 3.16e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780221778   3 KFIVIEGLEGAGKSSAVRYVTDYLQAHGvARIECTREPGGTPLAERMRAIVKEVHDERLTVEAELLLMYASRVQLVETRI 82
Cdd:cd01672    1 MFIVFEGIDGAGKTTLIELLAERLEARG-YEVVLTREPGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQHVEEVI 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780221778  83 KPALADGIWVVGDRHDLSSQAYQGGGRGIDANLIGAIKRAVLGDFKPDLTLYLDIDPAIGLQRARHRGELDRIELEQIGF 162
Cdd:cd01672   80 KPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDDRDEQEGLEF 159
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 780221778 163 FERTRQRYLELAAAD-DSIQVIDAGLPPEQVKAAIEAALE 201
Cdd:cd01672  160 HERVREGYLELAAQEpERIIVIDASQPLEEVLAEILKAIL 199
DTMP_kinase TIGR00041
dTMP kinase; Function: phosphorylation of DTMP to form DTDP in both de novo and salvage ...
2-196 3.05e-72

dTMP kinase; Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate. [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]


Pssm-ID: 161676  Cd Length: 195  Bit Score: 217.62  E-value: 3.05e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780221778    2 SKFIVIEGLEGAGKSSAVRYVTDYLQAHGVARIEcTREPGGTPLAERMRAIVKEVHDERLTVEAELLLMYASRVQLVETR 81
Cdd:TIGR00041   3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLF-TREPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHEHLEDK 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780221778   82 IKPALADGIWVVGDRHDLSSQAYQGGGRGIDANLIGAIKRAVLGDfKPDLTLYLDIDPAIGLQRARHRGELDRIELEQIG 161
Cdd:TIGR00041  82 IKPALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGD-MPDLTIYLDIDPEVALERLRKRGELDREEFEKLD 160
                         170       180       190
                  ....*....|....*....|....*....|....*
gi 780221778  162 FFERTRQRYLELAAADDSIQVIDAGLPPEQVKAAI 196
Cdd:TIGR00041 161 FFEKVRQRYLELADKEKSIHVIDATNSVEEVEQDI 195
Thymidylate_kin pfam02223
Thymidylate kinase;
7-196 1.89e-56

Thymidylate kinase;


Pssm-ID: 396690  Cd Length: 184  Bit Score: 177.11  E-value: 1.89e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780221778    7 IEGLEGAGKSSAVRYVTDYLQAHGVaRIECTREPGGTPLAERMRAIVKEvhDERLTVEAELLLMYASRVQLVETRIKPAL 86
Cdd:pfam02223   1 IEGLDGAGKTTQAELLKERLKEQGI-KVVFTREPGGTPIGEKIRELLLR--NEELSPLTEALLFAADRIQHLEQKIKPAL 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780221778   87 ADGIWVVGDRHDLSSQAYQGGGRGiDANLIGAIKRAVLGdfKPDLTLYLDIDPAIGLQRARHRGELDRIELEQIGFFERT 166
Cdd:pfam02223  78 KQGKTVIVDRYLFSGIAYQGAKGG-DLDLVLSLNPDVPG--KPDLTFLLDVDPEVALKRLRRRGELEKTEFEQLDFLRKV 154
                         170       180       190
                  ....*....|....*....|....*....|
gi 780221778  167 RQRYLELAAADDSIQVIDAGLPPEQVKAAI 196
Cdd:pfam02223 155 RERYLELAKFDERIKIIDASLSIEEVHEEI 184
PLN02924 PLN02924
thymidylate kinase
4-208 1.81e-11

thymidylate kinase


Pssm-ID: 178512  Cd Length: 220  Bit Score: 60.89  E-value: 1.81e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780221778   4 FIVIEGLEGAGKSSAVRYVTDYLQAHGVArIECTREPggtplaERMRAIVKEVhDERLTVEAEL------LLMYASRvql 77
Cdd:PLN02924  18 LIVLEGLDRSGKSTQCAKLVSFLKGLGVA-AELWRFP------DRTTSVGQMI-SAYLSNKSQLddraihLLFSANR--- 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780221778  78 VETR--IKPALADGIWVVGDRHDLSSQAYQgGGRGIDANLIGAIKRAVLgdfKPDLTLYLDIDPAIGLQRARHRGEldri 155
Cdd:PLN02924  87 WEKRslMERKLKSGTTLVVDRYSYSGVAFS-AAKGLDLEWCKAPEVGLP---APDLVLYLDISPEEAAERGGYGGE---- 158
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 780221778 156 ELEQIGFFERTRQRYLELaaADDSIQVIDAGLPPEQVKAAI-EAALEHYLASEG 208
Cdd:PLN02924 159 RYEKLEFQKKVAKRFQTL--RDSSWKIIDASQSIEEVEKKIrEVVLDTVQRCLA 210
 
Name Accession Description Interval E-value
Tmk COG0125
Thymidylate kinase [Nucleotide transport and metabolism]; Thymidylate kinase is part of the ...
1-205 7.11e-86

Thymidylate kinase [Nucleotide transport and metabolism]; Thymidylate kinase is part of the Pathway/BioSystem: Thymidylate biosynthesis


Pssm-ID: 439895 [Multi-domain]  Cd Length: 206  Bit Score: 252.39  E-value: 7.11e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780221778   1 MSKFIVIEGLEGAGKSSAVRYVTDYLQAHGVaRIECTREPGGTPLAERMRAIVKEvHDERLTVEAELLLMYASRVQLVET 80
Cdd:COG0125    2 KGKFIVFEGIDGSGKSTQIKLLAEYLEARGY-DVVLTREPGGTPLGEAIRELLLG-DNEDMSPRTELLLFAADRAQHVEE 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780221778  81 RIKPALADGIWVVGDRHDLSSQAYQGGGRGIDANLIGAIKRAVLGDFKPDLTLYLDIDPAIGLQRARHRG-ELDRIELEQ 159
Cdd:COG0125   80 VIRPALAAGKIVICDRYVDSSLAYQGGGRGLDLEWIRQLNRFATGGLKPDLTILLDVPPEVALARARARGgELDRFESED 159
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 780221778 160 IGFFERTRQRYLELAAAD-DSIQVIDAGLPPEQVKAAIEAALEHYLA 205
Cdd:COG0125  160 LEFHERVREGYLELAAKEpERIVVIDASQSIEEVHAEIREALAELLK 206
TMPK cd01672
Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the ...
3-201 3.16e-75

Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).


Pssm-ID: 238835  Cd Length: 200  Bit Score: 225.23  E-value: 3.16e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780221778   3 KFIVIEGLEGAGKSSAVRYVTDYLQAHGvARIECTREPGGTPLAERMRAIVKEVHDERLTVEAELLLMYASRVQLVETRI 82
Cdd:cd01672    1 MFIVFEGIDGAGKTTLIELLAERLEARG-YEVVLTREPGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQHVEEVI 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780221778  83 KPALADGIWVVGDRHDLSSQAYQGGGRGIDANLIGAIKRAVLGDFKPDLTLYLDIDPAIGLQRARHRGELDRIELEQIGF 162
Cdd:cd01672   80 KPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDDRDEQEGLEF 159
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 780221778 163 FERTRQRYLELAAAD-DSIQVIDAGLPPEQVKAAIEAALE 201
Cdd:cd01672  160 HERVREGYLELAAQEpERIIVIDASQPLEEVLAEILKAIL 199
DTMP_kinase TIGR00041
dTMP kinase; Function: phosphorylation of DTMP to form DTDP in both de novo and salvage ...
2-196 3.05e-72

dTMP kinase; Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate. [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]


Pssm-ID: 161676  Cd Length: 195  Bit Score: 217.62  E-value: 3.05e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780221778    2 SKFIVIEGLEGAGKSSAVRYVTDYLQAHGVARIEcTREPGGTPLAERMRAIVKEVHDERLTVEAELLLMYASRVQLVETR 81
Cdd:TIGR00041   3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLF-TREPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHEHLEDK 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780221778   82 IKPALADGIWVVGDRHDLSSQAYQGGGRGIDANLIGAIKRAVLGDfKPDLTLYLDIDPAIGLQRARHRGELDRIELEQIG 161
Cdd:TIGR00041  82 IKPALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGD-MPDLTIYLDIDPEVALERLRKRGELDREEFEKLD 160
                         170       180       190
                  ....*....|....*....|....*....|....*
gi 780221778  162 FFERTRQRYLELAAADDSIQVIDAGLPPEQVKAAI 196
Cdd:TIGR00041 161 FFEKVRQRYLELADKEKSIHVIDATNSVEEVEQDI 195
Thymidylate_kin pfam02223
Thymidylate kinase;
7-196 1.89e-56

Thymidylate kinase;


Pssm-ID: 396690  Cd Length: 184  Bit Score: 177.11  E-value: 1.89e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780221778    7 IEGLEGAGKSSAVRYVTDYLQAHGVaRIECTREPGGTPLAERMRAIVKEvhDERLTVEAELLLMYASRVQLVETRIKPAL 86
Cdd:pfam02223   1 IEGLDGAGKTTQAELLKERLKEQGI-KVVFTREPGGTPIGEKIRELLLR--NEELSPLTEALLFAADRIQHLEQKIKPAL 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780221778   87 ADGIWVVGDRHDLSSQAYQGGGRGiDANLIGAIKRAVLGdfKPDLTLYLDIDPAIGLQRARHRGELDRIELEQIGFFERT 166
Cdd:pfam02223  78 KQGKTVIVDRYLFSGIAYQGAKGG-DLDLVLSLNPDVPG--KPDLTFLLDVDPEVALKRLRRRGELEKTEFEQLDFLRKV 154
                         170       180       190
                  ....*....|....*....|....*....|
gi 780221778  167 RQRYLELAAADDSIQVIDAGLPPEQVKAAI 196
Cdd:pfam02223 155 RERYLELAKFDERIKIIDASLSIEEVHEEI 184
PLN02924 PLN02924
thymidylate kinase
4-208 1.81e-11

thymidylate kinase


Pssm-ID: 178512  Cd Length: 220  Bit Score: 60.89  E-value: 1.81e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780221778   4 FIVIEGLEGAGKSSAVRYVTDYLQAHGVArIECTREPggtplaERMRAIVKEVhDERLTVEAEL------LLMYASRvql 77
Cdd:PLN02924  18 LIVLEGLDRSGKSTQCAKLVSFLKGLGVA-AELWRFP------DRTTSVGQMI-SAYLSNKSQLddraihLLFSANR--- 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780221778  78 VETR--IKPALADGIWVVGDRHDLSSQAYQgGGRGIDANLIGAIKRAVLgdfKPDLTLYLDIDPAIGLQRARHRGEldri 155
Cdd:PLN02924  87 WEKRslMERKLKSGTTLVVDRYSYSGVAFS-AAKGLDLEWCKAPEVGLP---APDLVLYLDISPEEAAERGGYGGE---- 158
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 780221778 156 ELEQIGFFERTRQRYLELaaADDSIQVIDAGLPPEQVKAAI-EAALEHYLASEG 208
Cdd:PLN02924 159 RYEKLEFQKKVAKRFQTL--RDSSWKIIDASQSIEEVEKKIrEVVLDTVQRCLA 210
PRK07933 PRK07933
dTMP kinase;
5-201 1.38e-08

dTMP kinase;


Pssm-ID: 236133  Cd Length: 213  Bit Score: 53.06  E-value: 1.38e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780221778   5 IVIEGLEGAGKSSAVRYVTDYLQAHG--VARIECTREpGGTPLAERMRAIVKEVHDERLTVEAELLLMYA-SRVQLVEtR 81
Cdd:PRK07933   3 IAIEGVDGAGKRTLTEALRAALEARGrsVATLAFPRY-GRSVHADLAAEALHGRHGDLADSVYAMATLFAlDRAGARD-E 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780221778  82 IKPALADGIWVVGDRHDLSSQAYQGG--GRGIDANLIGAIKRAVLGDF---KPDLTLYLDIDPAIGLQRARHRGE----- 151
Cdd:PRK07933  81 LAGLLAAHDVVILDRYVASNAAYSAArlHQDADGEAVAWVAELEFGRLglpVPDLQVLLDVPVELAAERARRRAAqdadr 160
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 780221778 152 -LDRIELEQiGFFERTRQRYLELAAAD--DSIQVIDAGLPPEQVKAAIEAALE 201
Cdd:PRK07933 161 aRDAYERDD-GLQQRTGAVYAELAAQGwgGPWLVVDPDVDPAALAARLAAALL 212
dNK cd01673
Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to ...
4-150 2.73e-04

Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.


Pssm-ID: 238836  Cd Length: 193  Bit Score: 40.29  E-value: 2.73e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780221778   4 FIVIEGLEGAGKSSAVRYVTDYLQAHGVARIEcTREPGGTPLAERMraiVKEVHDERLTVEaelLLMYASRVQlVETRIK 83
Cdd:cd01673    1 VIVVEGNIGAGKSTLAKELAEHLGYEVVPEPV-EPDVEGNPFLEKF---YEDPKRWAFPFQ---LYFLLSRLK-QYKDAL 72
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 780221778  84 PALADGIWVVGDRHDLSSQA------YQGGGRGIDANLIGAIKRAVLGDFK-PDLTLYLDIDPAIGLQRARHRG 150
Cdd:cd01673   73 EHLSTGQGVILERSIFSDRVfaeanlKEGGIMKTEYDLYNELFDNLIPELLpPDLVIYLDASPETCLKRIKKRG 146
PRK06761 PRK06761
hypothetical protein; Provisional
1-30 6.72e-04

hypothetical protein; Provisional


Pssm-ID: 180682  Cd Length: 282  Bit Score: 39.74  E-value: 6.72e-04
                         10        20        30
                 ....*....|....*....|....*....|
gi 780221778   1 MSKFIVIEGLEGAGKSSAVRYVTDYLQAHG 30
Cdd:PRK06761   2 MTKLIIIEGLPGFGKSTTAKMLNDILSQNG 31
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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