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Conserved domains on  [gi|815690581|ref|WP_046425327|]
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MULTISPECIES: prepilin-type N-terminal cleavage/methylation domain-containing protein [Burkholderia]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
typeII_sec_gspH super family cl46935
type II secretion system protein H; This model represents GspH, protein H of the main terminal ...
 20-152 2.68e-07

type II secretion system protein H; This model represents GspH, protein H of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


The actual alignment was detected with superfamily member TIGR01708:

Pssm-ID: 130769 [Multi-domain]  Cd Length: 143  Bit Score: 47.56  E-value: 2.68e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815690581   20 QRGFTLLEMLVVLVIVGLLVAVVTLTPSRNRRT-DLAEEAQRLANLLESAGDDAQVRSIPIAWQAVGGGYRFVQRtDGGG 98
Cdd:TIGR01708   3 QSGFTLIELLVVLAIMGLVAAAAALSLVSHYGTkSLDQVAGRLAARLRLAQTSARATGRPVLLRLGSRGIRFGER-ASLA 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 815690581   99 WapmTDDLYRARRWGAAVTGVTVRYTGggdapSPVVLGNEGIDVPVTITLWSGD 152
Cdd:TIGR01708  82 L---PVDEVKMTDWTGQETVVADRQTV-----LTVLFLPDGRASPMDMTLQRKG 127
 
Name Accession Description Interval E-value
typeII_sec_gspH TIGR01708
type II secretion system protein H; This model represents GspH, protein H of the main terminal ...
 20-152 2.68e-07

type II secretion system protein H; This model represents GspH, protein H of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 130769 [Multi-domain]  Cd Length: 143  Bit Score: 47.56  E-value: 2.68e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815690581   20 QRGFTLLEMLVVLVIVGLLVAVVTLTPSRNRRT-DLAEEAQRLANLLESAGDDAQVRSIPIAWQAVGGGYRFVQRtDGGG 98
Cdd:TIGR01708   3 QSGFTLIELLVVLAIMGLVAAAAALSLVSHYGTkSLDQVAGRLAARLRLAQTSARATGRPVLLRLGSRGIRFGER-ASLA 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 815690581   99 WapmTDDLYRARRWGAAVTGVTVRYTGggdapSPVVLGNEGIDVPVTITLWSGD 152
Cdd:TIGR01708  82 L---PVDEVKMTDWTGQETVVADRQTV-----LTVLFLPDGRASPMDMTLQRKG 127
 
Name Accession Description Interval E-value
typeII_sec_gspH TIGR01708
type II secretion system protein H; This model represents GspH, protein H of the main terminal ...
 20-152 2.68e-07

type II secretion system protein H; This model represents GspH, protein H of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 130769 [Multi-domain]  Cd Length: 143  Bit Score: 47.56  E-value: 2.68e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 815690581   20 QRGFTLLEMLVVLVIVGLLVAVVTLTPSRNRRT-DLAEEAQRLANLLESAGDDAQVRSIPIAWQAVGGGYRFVQRtDGGG 98
Cdd:TIGR01708   3 QSGFTLIELLVVLAIMGLVAAAAALSLVSHYGTkSLDQVAGRLAARLRLAQTSARATGRPVLLRLGSRGIRFGER-ASLA 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 815690581   99 WapmTDDLYRARRWGAAVTGVTVRYTGggdapSPVVLGNEGIDVPVTITLWSGD 152
Cdd:TIGR01708  82 L---PVDEVKMTDWTGQETVVADRQTV-----LTVLFLPDGRASPMDMTLQRKG 127
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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