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Conserved domains on  [gi|817113935|ref|WP_046487061|]
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MULTISPECIES: N(5)-hydroxyornithine transformylase PvdF [Pseudomonas]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PurN super family cl43093
Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and ...
 122-251 9.22e-10

Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]; Folate-dependent phosphoribosylglycinamide formyltransferase PurN is part of the Pathway/BioSystem: Purine biosynthesis


The actual alignment was detected with superfamily member COG0299:

Pssm-ID: 440068 [Multi-domain]  Cd Length: 202  Bit Score: 56.97  E-value: 9.22e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817113935 122 AGKQDFERRLHDTLVELKADIVVLDGLLVIL-DELVRPgapFARRIMNIHPGITriesP-YerRGAYATWNAL-YGARgq 198
Cdd:COG0299   63 PSREAFDAALLEALDAYGPDLVVLAGFMRILtPEFVRA---FPGRIINIHPSLL----PaF--PGLHAHRQALeAGVK-- 131

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 817113935 199 avvdwttketqpceplyLTGASFHYVDNGIDSGEVfhdVL--KTEISPDDTILEL 251
Cdd:COG0299  132 -----------------VTGCTVHFVDEEVDTGPI---IAqaAVPVLPDDTEETL 166
 
Name Accession Description Interval E-value
PurN COG0299
Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and ...
 122-251 9.22e-10

Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]; Folate-dependent phosphoribosylglycinamide formyltransferase PurN is part of the Pathway/BioSystem: Purine biosynthesis


Pssm-ID: 440068 [Multi-domain]  Cd Length: 202  Bit Score: 56.97  E-value: 9.22e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817113935 122 AGKQDFERRLHDTLVELKADIVVLDGLLVIL-DELVRPgapFARRIMNIHPGITriesP-YerRGAYATWNAL-YGARgq 198
Cdd:COG0299   63 PSREAFDAALLEALDAYGPDLVVLAGFMRILtPEFVRA---FPGRIINIHPSLL----PaF--PGLHAHRQALeAGVK-- 131

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 817113935 199 avvdwttketqpceplyLTGASFHYVDNGIDSGEVfhdVL--KTEISPDDTILEL 251
Cdd:COG0299  132 -----------------VTGCTVHFVDEEVDTGPI---IAqaAVPVLPDDTEETL 166
FMT_core_like_3 cd08653
Formyl transferase catalytic core domain found in a group of proteins with unknown functions; ...
 128-251 3.32e-06

Formyl transferase catalytic core domain found in a group of proteins with unknown functions; Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalyzes the transfer of one-carbon groups, specifically the formyl- or hydroxymethyl- group. This domain contains a Rossmann fold and it is the catalytic domain of the enzyme.


Pssm-ID: 187721 [Multi-domain]  Cd Length: 152  Bit Score: 46.05  E-value: 3.32e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817113935 128 ERRLHDTLVELKADIVVLDGLLVILDELVR-PGAPfarrIMNIHPGItrieSPYeRRGAYATWNALYGARGQAVvdwttk 206
Cdd:cd08653   36 GPEVVAALRALAPDVVSVYGCGIIKDALLAiPPLG----VLNLHGGI----LPD-YRGVHTGFWALANGDPDNV------ 100

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 817113935 207 etqpceplyltGASFHYVDNGIDSGEVFHDVLkTEISPDDTILEL 251
Cdd:cd08653  101 -----------GVTVHLVDAGIDTGDVLAQAR-PPLAAGDTLLSL 133
 
Name Accession Description Interval E-value
PurN COG0299
Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and ...
 122-251 9.22e-10

Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]; Folate-dependent phosphoribosylglycinamide formyltransferase PurN is part of the Pathway/BioSystem: Purine biosynthesis


Pssm-ID: 440068 [Multi-domain]  Cd Length: 202  Bit Score: 56.97  E-value: 9.22e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817113935 122 AGKQDFERRLHDTLVELKADIVVLDGLLVIL-DELVRPgapFARRIMNIHPGITriesP-YerRGAYATWNAL-YGARgq 198
Cdd:COG0299   63 PSREAFDAALLEALDAYGPDLVVLAGFMRILtPEFVRA---FPGRIINIHPSLL----PaF--PGLHAHRQALeAGVK-- 131

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 817113935 199 avvdwttketqpceplyLTGASFHYVDNGIDSGEVfhdVL--KTEISPDDTILEL 251
Cdd:COG0299  132 -----------------VTGCTVHFVDEEVDTGPI---IAqaAVPVLPDDTEETL 166
FMT_core_like_3 cd08653
Formyl transferase catalytic core domain found in a group of proteins with unknown functions; ...
 128-251 3.32e-06

Formyl transferase catalytic core domain found in a group of proteins with unknown functions; Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalyzes the transfer of one-carbon groups, specifically the formyl- or hydroxymethyl- group. This domain contains a Rossmann fold and it is the catalytic domain of the enzyme.


Pssm-ID: 187721 [Multi-domain]  Cd Length: 152  Bit Score: 46.05  E-value: 3.32e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 817113935 128 ERRLHDTLVELKADIVVLDGLLVILDELVR-PGAPfarrIMNIHPGItrieSPYeRRGAYATWNALYGARGQAVvdwttk 206
Cdd:cd08653   36 GPEVVAALRALAPDVVSVYGCGIIKDALLAiPPLG----VLNLHGGI----LPD-YRGVHTGFWALANGDPDNV------ 100

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 817113935 207 etqpceplyltGASFHYVDNGIDSGEVFHDVLkTEISPDDTILEL 251
Cdd:cd08653  101 -----------GVTVHLVDAGIDTGDVLAQAR-PPLAAGDTLLSL 133
FMT_core_like_4 cd08651
Formyl transferase catalytic core domain found in a group of proteins with unknown functions; ...
 196-251 1.56e-03

Formyl transferase catalytic core domain found in a group of proteins with unknown functions; Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalyzes the transfer of one-carbon groups, specifically the formyl- or hydroxymethyl- group. This domain contains a Rossmann fold and it is the catalytic domain of the enzyme.


Pssm-ID: 187720 [Multi-domain]  Cd Length: 180  Bit Score: 38.40  E-value: 1.56e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 817113935 196 RGQAVVDWTT----KETqpceplyltGASFHYVDNGIDSGEVFhDVLKTEISPDDTILEL 251
Cdd:cd08651  112 RGRAPIPWAIllglKET---------ASTFFWMDEGADSGDIL-SQEPFPIDKDDTANSL 161
Fmt COG0223
Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis];
217-275 3.69e-03

Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis];


Pssm-ID: 439993 [Multi-domain]  Cd Length: 308  Bit Score: 38.16  E-value: 3.69e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 817113935 217 TGASFHYVDNGIDSGEVFHdVLKTEISPDDTILELrwnnfnnslfpalhegLERLAQQG 275
Cdd:COG0223  131 TGVTIMQMDEGLDTGDILL-QEEVPIGPDDTAGSL----------------HDKLAELG 172
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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