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Conserved domains on  [gi|820954271|ref|WP_046811894|]
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MULTISPECIES: acyl-CoA dehydrogenase C-terminal domain-containing protein [Acinetobacter]

Protein Classification

acyl-CoA dehydrogenase family protein( domain architecture ID 1002480)

acyl-CoA dehydrogenase family protein may participate in consecutive cycles of fatty acid beta-oxidation to produce acetyl-CoA and reducing equivalents for generating energy

Gene Ontology:  GO:0003995
PubMed:  7601336

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
PTZ00456 super family cl33187
acyl-CoA dehydrogenase; Provisional
3-598 0e+00

acyl-CoA dehydrogenase; Provisional


The actual alignment was detected with superfamily member PTZ00456:

Pssm-ID: 185635 [Multi-domain]  Cd Length: 622  Bit Score: 700.47  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271   3 QYKAPLRDMQFVLHELLNAEEHYAKLPdfQGNVSRELVDQYLEAAADFCENELSPLNQVGDREGCTW-NDGVVTTPTGFK 81
Cdd:PTZ00456  25 QYQPRIRDVQFLVEEVFNMYDHYEKLG--KTDVTKELMDSLLEEASKLATQTLLPLYESSDSEGCVLlKDGNVTTPKGFK 102
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271  82 EAYQKYIELGFPSLSAEEQYGGQALPNSLGIAISEMVGSSNWAWGMYPGLSHGAVRTLEHHGSDEQKNTYLPNLVSGVWT 161
Cdd:PTZ00456 103 EAYQALKAGGWTGISEPEEYGGQALPLSVGFITRELMATANWGFSMYPGLSIGAANTLMAWGSEEQKEQYLTKLVSGEWS 182
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 162 GTMCLTESHAGSDLGIIRTKAEPNADGSYAISGEKIFISAGEHDMAENIIHIVLARLPGAPKGTKGISLFIVPKFNVNAD 241
Cdd:PTZ00456 183 GTMCLTEPQCGTDLGQVKTKAEPSADGSYKITGTKIFISAGDHDLTENIVHIVLARLPNSLPTTKGLSLFLVPRHVVKPD 262
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 242 GTIGERNAVRCGSIEHKMGIHGNATCVINFDQAKGYLIGPENRGLNCMFTFMNTARIGTAVQGLAASESSFQGALTYAKE 321
Cdd:PTZ00456 263 GSLETAKNVKCIGLEKKMGIKGSSTCQLSFENSVGYLIGEPNAGMKQMFTFMNTARVGTALEGVCHAELAFQNALRYARE 342
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 322 RLAMRSLSGPKAPEKEADPIIVHPAVRNMLLTQKAFAEGGRALVYLLAQYADIVEKGETEEERKFADNILSLLTPIAKAF 401
Cdd:PTZ00456 343 RRSMRALSGTKEPEKPADRIICHANVRQNILFAKAVAEGGRALLLDVGRLLDIHAAAKDAATREALDHEIGFYTPIAKGC 422
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 402 LTETGSESAKHGVQVFGGHGFISEHGMEQIVRDTRIACLYEGTTEIQALDLLGRKVLQTQGA-MLRDFTKIIHKFVEANK 480
Cdd:PTZ00456 423 LTEWGVEAASRCLQVWGGHGYIKGNGMEQILRDARIGTLYEGTTGIQALDFIGRKVLSLKGGnEVARFGKRVSKLVRAHL 502
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 481 -DNAAMKEFVEPLAALNKEWGDLTMQIGMRAMQNPDEVGAAAVDYLYFAGYITLAYLWARMALVAQEKLAEGTTDVDFYN 559
Cdd:PTZ00456 503 fSRGALGQYARRLWLLQKQWRLATTRVKMMAMSDRDAVGAASEDFLMYTGYMVLGYYWLRMAEVAQKKVAAGQDADGFYQ 582
                        570       580       590
                 ....*....|....*....|....*....|....*....
gi 820954271 560 AKVTTARFYFKKILPRVRSHVDVIAGGlDPLMSLDAEHF 598
Cdd:PTZ00456 583 CKVDTCQYVFQRILPRADAHFQIMQAG-PSIMASKEENW 620
 
Name Accession Description Interval E-value
PTZ00456 PTZ00456
acyl-CoA dehydrogenase; Provisional
3-598 0e+00

acyl-CoA dehydrogenase; Provisional


Pssm-ID: 185635 [Multi-domain]  Cd Length: 622  Bit Score: 700.47  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271   3 QYKAPLRDMQFVLHELLNAEEHYAKLPdfQGNVSRELVDQYLEAAADFCENELSPLNQVGDREGCTW-NDGVVTTPTGFK 81
Cdd:PTZ00456  25 QYQPRIRDVQFLVEEVFNMYDHYEKLG--KTDVTKELMDSLLEEASKLATQTLLPLYESSDSEGCVLlKDGNVTTPKGFK 102
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271  82 EAYQKYIELGFPSLSAEEQYGGQALPNSLGIAISEMVGSSNWAWGMYPGLSHGAVRTLEHHGSDEQKNTYLPNLVSGVWT 161
Cdd:PTZ00456 103 EAYQALKAGGWTGISEPEEYGGQALPLSVGFITRELMATANWGFSMYPGLSIGAANTLMAWGSEEQKEQYLTKLVSGEWS 182
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 162 GTMCLTESHAGSDLGIIRTKAEPNADGSYAISGEKIFISAGEHDMAENIIHIVLARLPGAPKGTKGISLFIVPKFNVNAD 241
Cdd:PTZ00456 183 GTMCLTEPQCGTDLGQVKTKAEPSADGSYKITGTKIFISAGDHDLTENIVHIVLARLPNSLPTTKGLSLFLVPRHVVKPD 262
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 242 GTIGERNAVRCGSIEHKMGIHGNATCVINFDQAKGYLIGPENRGLNCMFTFMNTARIGTAVQGLAASESSFQGALTYAKE 321
Cdd:PTZ00456 263 GSLETAKNVKCIGLEKKMGIKGSSTCQLSFENSVGYLIGEPNAGMKQMFTFMNTARVGTALEGVCHAELAFQNALRYARE 342
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 322 RLAMRSLSGPKAPEKEADPIIVHPAVRNMLLTQKAFAEGGRALVYLLAQYADIVEKGETEEERKFADNILSLLTPIAKAF 401
Cdd:PTZ00456 343 RRSMRALSGTKEPEKPADRIICHANVRQNILFAKAVAEGGRALLLDVGRLLDIHAAAKDAATREALDHEIGFYTPIAKGC 422
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 402 LTETGSESAKHGVQVFGGHGFISEHGMEQIVRDTRIACLYEGTTEIQALDLLGRKVLQTQGA-MLRDFTKIIHKFVEANK 480
Cdd:PTZ00456 423 LTEWGVEAASRCLQVWGGHGYIKGNGMEQILRDARIGTLYEGTTGIQALDFIGRKVLSLKGGnEVARFGKRVSKLVRAHL 502
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 481 -DNAAMKEFVEPLAALNKEWGDLTMQIGMRAMQNPDEVGAAAVDYLYFAGYITLAYLWARMALVAQEKLAEGTTDVDFYN 559
Cdd:PTZ00456 503 fSRGALGQYARRLWLLQKQWRLATTRVKMMAMSDRDAVGAASEDFLMYTGYMVLGYYWLRMAEVAQKKVAAGQDADGFYQ 582
                        570       580       590
                 ....*....|....*....|....*....|....*....
gi 820954271 560 AKVTTARFYFKKILPRVRSHVDVIAGGlDPLMSLDAEHF 598
Cdd:PTZ00456 583 CKVDTCQYVFQRILPRADAHFQIMQAG-PSIMASKEENW 620
ACAD_fadE5 cd01153
Putative acyl-CoA dehydrogenases similar to fadE5; Putative acyl-CoA dehydrogenase (ACAD). ...
44-457 5.42e-177

Putative acyl-CoA dehydrogenases similar to fadE5; Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.


Pssm-ID: 173842 [Multi-domain]  Cd Length: 407  Bit Score: 506.93  E-value: 5.42e-177
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271  44 LEAAADFCENELSPLNQVGDREGCTWNDGVVTTPTGFKEAYQKYIELGFPSLSAEEQYGGQALPNSLGIAISEMVgSSNW 123
Cdd:cd01153    2 LEEVARLAENVLAPLNADGDREGPVFDDGRVVVPPPFKEALDAFAEAGWMALGVPEEYGGQGLPITVYSALAEIF-SRGD 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 124 AWGMYPGLSHGAVRTLEHHGSDEQKNTYLPNLVSGVWTGTMCLTESHAGSDLGIIRTKAEPNADGSYAISGEKIFISAGE 203
Cdd:cd01153   81 APLMYASGTQGAAATLLAHGTEAQREKWIPRLAEGEWTGTMCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFISAGE 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 204 HDMAENIIHIVLARLPGAPKGTKGISLFIVPKFNVNadgtiGERNAVRCGSIEHKMGIHGNATCVINFDQAKGYLIGPEN 283
Cdd:cd01153  161 HDMSENIVHLVLARSEGAPPGVKGLSLFLVPKFLDD-----GERNGVTVARIEEKMGLHGSPTCELVFDNAKGELIGEEG 235
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 284 RGLNCMFTFMNTARIGTAVQGLAASESSFQGALTYAKERLAMRSLSgpkaPEKEADPIIVHPAVRNMLLTQKAFAEGGRA 363
Cdd:cd01153  236 MGLAQMFAMMNGARLGVGTQGTGLAEAAYLNALAYAKERKQGGDLI----KAAPAVTIIHHPDVRRSLMTQKAYAEGSRA 311
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 364 LVYLLAQYADIVEKGETEEE-RKFADNILSLLTPIAKAFLTETGSESAKHGVQVFGGHGFISEHGMEQIVRDTRIACLYE 442
Cdd:cd01153  312 LDLYTATVQDLAERKATEGEdRKALSALADLLTPVVKGFGSEAALEAVSDAIQVHGGSGYTREYPIEQYYRDARITTIYE 391
                        410
                 ....*....|....*
gi 820954271 443 GTTEIQALDLLGRKV 457
Cdd:cd01153  392 GTTGIQALDLIGRKI 406
CaiA COG1960
Acyl-CoA dehydrogenase related to the alkylation response protein AidB [Lipid transport and ...
38-462 4.45e-114

Acyl-CoA dehydrogenase related to the alkylation response protein AidB [Lipid transport and metabolism]; Acyl-CoA dehydrogenase related to the alkylation response protein AidB is part of the Pathway/BioSystem: Fatty acid biosynthesis


Pssm-ID: 441563 [Multi-domain]  Cd Length: 381  Bit Score: 345.29  E-value: 4.45e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271  38 ELVDQYLEAAADFCENELSPLNQVGDREGctwndgvvTTPtgfKEAYQKYIELGFPSLSAEEQYGGQALPNSLGIAISEM 117
Cdd:COG1960    7 EEQRALRDEVREFAEEEIAPEAREWDREG--------EFP---RELWRKLAELGLLGLTIPEEYGGLGLSLVELALVLEE 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 118 VGSSNWAWGMYPGLSHGAVRTLEHHGSDEQKNTYLPNLVSGVWTGTMCLTESHAGSDLGIIRTKAEPNADGsYAISGEKI 197
Cdd:COG1960   76 LARADASLALPVGVHNGAAEALLRFGTEEQKERYLPRLASGEWIGAFALTEPGAGSDAAALRTTAVRDGDG-YVLNGQKT 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 198 FIS-AGEHDmaeniIHIVLARLPGAPkGTKGISLFIVPKFnvnADGtigernaVRCGSIEHKMGIHGNATCVINFDQ--- 273
Cdd:COG1960  155 FITnAPVAD-----VILVLARTDPAA-GHRGISLFLVPKD---TPG-------VTVGRIEDKMGLRGSDTGELFFDDvrv 218
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 274 AKGYLIGPENRGLNCMFTFMNTARIGTAVQGLAASESSFQGALTYAKERLAMrslsgpkapekeADPIIVHPAVRNMLLT 353
Cdd:COG1960  219 PAENLLGEEGKGFKIAMSTLNAGRLGLAAQALGIAEAALELAVAYAREREQF------------GRPIADFQAVQHRLAD 286
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 354 QKAFAEGGRALVYLLAQYADIVEKgeteeerkfadniLSLLTPIAKAFLTETGSESAKHGVQVFGGHGFISEHGMEQIVR 433
Cdd:COG1960  287 MAAELEAARALVYRAAWLLDAGED-------------AALEAAMAKLFATEAALEVADEALQIHGGYGYTREYPLERLYR 353
                        410       420
                 ....*....|....*....|....*....
gi 820954271 434 DTRIACLYEGTTEIQALDlLGRKVLQTQG 462
Cdd:COG1960  354 DARILTIYEGTNEIQRLI-IARRLLGRPG 381
Acyl-CoA_dh_C pfam12806
Acetyl-CoA dehydrogenase C-terminal like; this domain would appear to be the very C-terminal ...
469-593 2.98e-46

Acetyl-CoA dehydrogenase C-terminal like; this domain would appear to be the very C-terminal region of many bacterial acetyl-CoA dehydrogenases.


Pssm-ID: 463716  Cd Length: 126  Bit Score: 158.86  E-value: 2.98e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271  469 TKIIHKFVEANKDNAAMKEFVEPLAALNKEWGDLTMQIGMRAMQ-NPDEVGAAAVDYLYFAGYITLAYLWARMALVAQEK 547
Cdd:pfam12806   1 LAEIRAFIAAAAGDPALAAEAAALAAALAALQEATAWLLARAAKgDPDEAGAGAVPYLMLFGDVVLGWLWLRQALAAQAK 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 820954271  548 LAEGTTDVDFYNAKVTTARFYFKKILPRVRSHVDVIAGGLDPLMSL 593
Cdd:pfam12806  81 LAAGAKDAAFYEGKIATARFFAERVLPRTAALAAAIEAGDDSLMAL 126
 
Name Accession Description Interval E-value
PTZ00456 PTZ00456
acyl-CoA dehydrogenase; Provisional
3-598 0e+00

acyl-CoA dehydrogenase; Provisional


Pssm-ID: 185635 [Multi-domain]  Cd Length: 622  Bit Score: 700.47  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271   3 QYKAPLRDMQFVLHELLNAEEHYAKLPdfQGNVSRELVDQYLEAAADFCENELSPLNQVGDREGCTW-NDGVVTTPTGFK 81
Cdd:PTZ00456  25 QYQPRIRDVQFLVEEVFNMYDHYEKLG--KTDVTKELMDSLLEEASKLATQTLLPLYESSDSEGCVLlKDGNVTTPKGFK 102
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271  82 EAYQKYIELGFPSLSAEEQYGGQALPNSLGIAISEMVGSSNWAWGMYPGLSHGAVRTLEHHGSDEQKNTYLPNLVSGVWT 161
Cdd:PTZ00456 103 EAYQALKAGGWTGISEPEEYGGQALPLSVGFITRELMATANWGFSMYPGLSIGAANTLMAWGSEEQKEQYLTKLVSGEWS 182
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 162 GTMCLTESHAGSDLGIIRTKAEPNADGSYAISGEKIFISAGEHDMAENIIHIVLARLPGAPKGTKGISLFIVPKFNVNAD 241
Cdd:PTZ00456 183 GTMCLTEPQCGTDLGQVKTKAEPSADGSYKITGTKIFISAGDHDLTENIVHIVLARLPNSLPTTKGLSLFLVPRHVVKPD 262
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 242 GTIGERNAVRCGSIEHKMGIHGNATCVINFDQAKGYLIGPENRGLNCMFTFMNTARIGTAVQGLAASESSFQGALTYAKE 321
Cdd:PTZ00456 263 GSLETAKNVKCIGLEKKMGIKGSSTCQLSFENSVGYLIGEPNAGMKQMFTFMNTARVGTALEGVCHAELAFQNALRYARE 342
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 322 RLAMRSLSGPKAPEKEADPIIVHPAVRNMLLTQKAFAEGGRALVYLLAQYADIVEKGETEEERKFADNILSLLTPIAKAF 401
Cdd:PTZ00456 343 RRSMRALSGTKEPEKPADRIICHANVRQNILFAKAVAEGGRALLLDVGRLLDIHAAAKDAATREALDHEIGFYTPIAKGC 422
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 402 LTETGSESAKHGVQVFGGHGFISEHGMEQIVRDTRIACLYEGTTEIQALDLLGRKVLQTQGA-MLRDFTKIIHKFVEANK 480
Cdd:PTZ00456 423 LTEWGVEAASRCLQVWGGHGYIKGNGMEQILRDARIGTLYEGTTGIQALDFIGRKVLSLKGGnEVARFGKRVSKLVRAHL 502
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 481 -DNAAMKEFVEPLAALNKEWGDLTMQIGMRAMQNPDEVGAAAVDYLYFAGYITLAYLWARMALVAQEKLAEGTTDVDFYN 559
Cdd:PTZ00456 503 fSRGALGQYARRLWLLQKQWRLATTRVKMMAMSDRDAVGAASEDFLMYTGYMVLGYYWLRMAEVAQKKVAAGQDADGFYQ 582
                        570       580       590
                 ....*....|....*....|....*....|....*....
gi 820954271 560 AKVTTARFYFKKILPRVRSHVDVIAGGlDPLMSLDAEHF 598
Cdd:PTZ00456 583 CKVDTCQYVFQRILPRADAHFQIMQAG-PSIMASKEENW 620
ACAD_fadE5 cd01153
Putative acyl-CoA dehydrogenases similar to fadE5; Putative acyl-CoA dehydrogenase (ACAD). ...
44-457 5.42e-177

Putative acyl-CoA dehydrogenases similar to fadE5; Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.


Pssm-ID: 173842 [Multi-domain]  Cd Length: 407  Bit Score: 506.93  E-value: 5.42e-177
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271  44 LEAAADFCENELSPLNQVGDREGCTWNDGVVTTPTGFKEAYQKYIELGFPSLSAEEQYGGQALPNSLGIAISEMVgSSNW 123
Cdd:cd01153    2 LEEVARLAENVLAPLNADGDREGPVFDDGRVVVPPPFKEALDAFAEAGWMALGVPEEYGGQGLPITVYSALAEIF-SRGD 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 124 AWGMYPGLSHGAVRTLEHHGSDEQKNTYLPNLVSGVWTGTMCLTESHAGSDLGIIRTKAEPNADGSYAISGEKIFISAGE 203
Cdd:cd01153   81 APLMYASGTQGAAATLLAHGTEAQREKWIPRLAEGEWTGTMCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFISAGE 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 204 HDMAENIIHIVLARLPGAPKGTKGISLFIVPKFNVNadgtiGERNAVRCGSIEHKMGIHGNATCVINFDQAKGYLIGPEN 283
Cdd:cd01153  161 HDMSENIVHLVLARSEGAPPGVKGLSLFLVPKFLDD-----GERNGVTVARIEEKMGLHGSPTCELVFDNAKGELIGEEG 235
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 284 RGLNCMFTFMNTARIGTAVQGLAASESSFQGALTYAKERLAMRSLSgpkaPEKEADPIIVHPAVRNMLLTQKAFAEGGRA 363
Cdd:cd01153  236 MGLAQMFAMMNGARLGVGTQGTGLAEAAYLNALAYAKERKQGGDLI----KAAPAVTIIHHPDVRRSLMTQKAYAEGSRA 311
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 364 LVYLLAQYADIVEKGETEEE-RKFADNILSLLTPIAKAFLTETGSESAKHGVQVFGGHGFISEHGMEQIVRDTRIACLYE 442
Cdd:cd01153  312 LDLYTATVQDLAERKATEGEdRKALSALADLLTPVVKGFGSEAALEAVSDAIQVHGGSGYTREYPIEQYYRDARITTIYE 391
                        410
                 ....*....|....*
gi 820954271 443 GTTEIQALDLLGRKV 457
Cdd:cd01153  392 GTTGIQALDLIGRKI 406
CaiA COG1960
Acyl-CoA dehydrogenase related to the alkylation response protein AidB [Lipid transport and ...
38-462 4.45e-114

Acyl-CoA dehydrogenase related to the alkylation response protein AidB [Lipid transport and metabolism]; Acyl-CoA dehydrogenase related to the alkylation response protein AidB is part of the Pathway/BioSystem: Fatty acid biosynthesis


Pssm-ID: 441563 [Multi-domain]  Cd Length: 381  Bit Score: 345.29  E-value: 4.45e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271  38 ELVDQYLEAAADFCENELSPLNQVGDREGctwndgvvTTPtgfKEAYQKYIELGFPSLSAEEQYGGQALPNSLGIAISEM 117
Cdd:COG1960    7 EEQRALRDEVREFAEEEIAPEAREWDREG--------EFP---RELWRKLAELGLLGLTIPEEYGGLGLSLVELALVLEE 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 118 VGSSNWAWGMYPGLSHGAVRTLEHHGSDEQKNTYLPNLVSGVWTGTMCLTESHAGSDLGIIRTKAEPNADGsYAISGEKI 197
Cdd:COG1960   76 LARADASLALPVGVHNGAAEALLRFGTEEQKERYLPRLASGEWIGAFALTEPGAGSDAAALRTTAVRDGDG-YVLNGQKT 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 198 FIS-AGEHDmaeniIHIVLARLPGAPkGTKGISLFIVPKFnvnADGtigernaVRCGSIEHKMGIHGNATCVINFDQ--- 273
Cdd:COG1960  155 FITnAPVAD-----VILVLARTDPAA-GHRGISLFLVPKD---TPG-------VTVGRIEDKMGLRGSDTGELFFDDvrv 218
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 274 AKGYLIGPENRGLNCMFTFMNTARIGTAVQGLAASESSFQGALTYAKERLAMrslsgpkapekeADPIIVHPAVRNMLLT 353
Cdd:COG1960  219 PAENLLGEEGKGFKIAMSTLNAGRLGLAAQALGIAEAALELAVAYAREREQF------------GRPIADFQAVQHRLAD 286
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 354 QKAFAEGGRALVYLLAQYADIVEKgeteeerkfadniLSLLTPIAKAFLTETGSESAKHGVQVFGGHGFISEHGMEQIVR 433
Cdd:COG1960  287 MAAELEAARALVYRAAWLLDAGED-------------AALEAAMAKLFATEAALEVADEALQIHGGYGYTREYPLERLYR 353
                        410       420
                 ....*....|....*....|....*....
gi 820954271 434 DTRIACLYEGTTEIQALDlLGRKVLQTQG 462
Cdd:COG1960  354 DARILTIYEGTNEIQRLI-IARRLLGRPG 381
ACAD cd00567
Acyl-CoA dehydrogenase; Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal ...
134-453 1.17e-63

Acyl-CoA dehydrogenase; Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase (IBDH), glutaryl-CoA deydrogenase (GCD) and Crotonobetainyl-CoA dehydrogenase. The mitochondrial ACAD's are generally homotetramers, except for VLCAD, which is a homodimer. Related enzymes include the SOS adaptive reponse proten aidB, Naphthocyclinone hydroxylase (NcnH), and and Dibenzothiophene (DBT) desulfurization enzyme C (DszC)


Pssm-ID: 173838 [Multi-domain]  Cd Length: 327  Bit Score: 212.53  E-value: 1.17e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 134 GAVRTLEHHGSDEQKNTYLPNLVSGVWTGTMCLTESHAGSDLGIIRTKAEPNADGsYAISGEKIFISAGehDMAEniIHI 213
Cdd:cd00567   43 LGAALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKDGDG-YVLNGRKIFISNG--GDAD--LFI 117
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 214 VLARLPGAPKGTKGISLFIVPKfnvnadGTIGernaVRCGSIEHKMGIHGNATCVINFDQAK---GYLIGPENRGLNCMF 290
Cdd:cd00567  118 VLARTDEEGPGHRGISAFLVPA------DTPG----VTVGRIWDKMGMRGSGTGELVFDDVRvpeDNLLGEEGGGFELAM 187
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 291 TFMNTARIGTAVQGLAASESSFQGALTYAKERlamrslsgpKAPEKeadPIIVHPAVRNMLLTQKAFAEGGRALVYLLAQ 370
Cdd:cd00567  188 KGLNVGRLLLAAVALGAARAALDEAVEYAKQR---------KQFGK---PLAEFQAVQFKLADMAAELEAARLLLYRAAW 255
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 371 YADiveKGETEeerkfadniLSLLTPIAKAFLTETGSESAKHGVQVFGGHGFISEHGMEQIVRDTRIACLYEGTTEIQAL 450
Cdd:cd00567  256 LLD---QGPDE---------ARLEAAMAKLFATEAAREVADLAMQIHGGRGYSREYPVERYLRDARAARIAEGTAEIQRL 323

                 ...
gi 820954271 451 DLL 453
Cdd:cd00567  324 IIA 326
AidB cd01154
Proteins involved in DNA damage response, similar to the AidB gene product; AidB is one of ...
134-453 5.14e-53

Proteins involved in DNA damage response, similar to the AidB gene product; AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.


Pssm-ID: 173843 [Multi-domain]  Cd Length: 418  Bit Score: 186.81  E-value: 5.14e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 134 GAVRTLEHHGSDEQKNTYLPNLVSGV---WTGTMCLTESHAGSDLGIIRTKAEPNADGSYAISGEKIFISAGEHDmaeni 210
Cdd:cd01154  118 AAVYALRKYGPEELKQYLPGLLSDRYktgLLGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASAPLAD----- 192
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 211 IHIVLARLPGAPKGTKGISLFIVPKFNvnADGTigeRNAVRCGSIEHKMGIHGNATCVINFDQAKGYLIGPENRGLNCMF 290
Cdd:cd01154  193 AALVLARPEGAPAGARGLSLFLVPRLL--EDGT---RNGYRIRRLKDKLGTRSVATGEVEFDDAEAYLIGDEGKGIYYIL 267
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 291 TFMNTARIGTAVQGLAASESSFQGALTYAKERLAMRSlsgpkapekeadPIIVHPAVRNMLLTQKAFAEGGRALVYLLAQ 370
Cdd:cd01154  268 EMLNISRLDNAVAALGIMRRALSEAYHYARHRRAFGK------------PLIDHPLMRRDLAEMEVDVEAATALTFRAAR 335
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 371 YADIVEKGEtEEERKFAdnilSLLTPIAKAFLTETGSESAKHGVQVFGGHGFISEHGMEQIVRDTRIACLYEGTTEIQAL 450
Cdd:cd01154  336 AFDRAAADK-PVEAHMA----RLATPVAKLIACKRAAPVTSEAMEVFGGNGYLEEWPVARLHREAQVTPIWEGTGNIQAL 410

                 ...
gi 820954271 451 DLL 453
Cdd:cd01154  411 DVL 413
SCAD_SBCAD cd01158
Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA ...
41-450 4.32e-52

Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases; Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.


Pssm-ID: 173847 [Multi-domain]  Cd Length: 373  Bit Score: 182.85  E-value: 4.32e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271  41 DQYLEAAADFCENELSPLNQVGDREGctwndgvvTTPtgfKEAYQKYIELGFPSLSAEEQYGGQALPN-SLGIAISEMV- 118
Cdd:cd01158    4 QMIRKTVRDFAEKEIAPLAAEMDEKG--------EFP---REVIKEMAELGLMGIPIPEEYGGAGLDFlAYAIAIEELAk 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 119 GSSNWAWGMYPGLSHGAvRTLEHHGSDEQKNTYLPNLVSGVWTGTMCLTESHAGSDLGIIRTKAEPNADgSYAISGEKIF 198
Cdd:cd01158   73 VDASVAVIVSVHNSLGA-NPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKDGD-DYVLNGSKMW 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 199 ISAGEHdmAEniIHIVLARLpGAPKGTKGISLFIVPKfnvNADG-TIGERnavrcgsiEHKMGIHGNATCVINFDQA--- 274
Cdd:cd01158  151 ITNGGE--AD--FYIVFAVT-DPSKGYRGITAFIVER---DTPGlSVGKK--------EDKLGIRGSSTTELIFEDVrvp 214
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 275 KGYLIGPENRGLNCMFTFMNTARIGTAVQGLAASESSFQGALTYAKERLAMrslsgpkapekeADPIIVHPAVRNMLLTQ 354
Cdd:cd01158  215 KENILGEEGEGFKIAMQTLDGGRIGIAAQALGIAQAALDAAVDYAKERKQF------------GKPIADFQGIQFKLADM 282
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 355 KAFAEGGRALVYllaQYADIVEKGETeeerkfadniLSLLTPIAKAFLTETGSESAKHGVQVFGGHGFISEHGMEQIVRD 434
Cdd:cd01158  283 ATEIEAARLLTY---KAARLKDNGEP----------FIKEAAMAKLFASEVAMRVTTDAVQIFGGYGYTKDYPVERYYRD 349
                        410
                 ....*....|....*.
gi 820954271 435 TRIACLYEGTTEIQAL 450
Cdd:cd01158  350 AKITEIYEGTSEIQRL 365
Acyl-CoA_dh_C pfam12806
Acetyl-CoA dehydrogenase C-terminal like; this domain would appear to be the very C-terminal ...
469-593 2.98e-46

Acetyl-CoA dehydrogenase C-terminal like; this domain would appear to be the very C-terminal region of many bacterial acetyl-CoA dehydrogenases.


Pssm-ID: 463716  Cd Length: 126  Bit Score: 158.86  E-value: 2.98e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271  469 TKIIHKFVEANKDNAAMKEFVEPLAALNKEWGDLTMQIGMRAMQ-NPDEVGAAAVDYLYFAGYITLAYLWARMALVAQEK 547
Cdd:pfam12806   1 LAEIRAFIAAAAGDPALAAEAAALAAALAALQEATAWLLARAAKgDPDEAGAGAVPYLMLFGDVVLGWLWLRQALAAQAK 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 820954271  548 LAEGTTDVDFYNAKVTTARFYFKKILPRVRSHVDVIAGGLDPLMSL 593
Cdd:pfam12806  81 LAAGAKDAAFYEGKIATARFFAERVLPRTAALAAAIEAGDDSLMAL 126
LCAD cd01160
Long chain acyl-CoA dehydrogenase; LCAD is an acyl-CoA dehydrogenases (ACAD), which is found ...
50-458 1.19e-44

Long chain acyl-CoA dehydrogenase; LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.


Pssm-ID: 173849 [Multi-domain]  Cd Length: 372  Bit Score: 162.67  E-value: 1.19e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271  50 FCENELSPLNQVGDRegctwnDGVVTtptgfKEAYQKYIELGFPSLSAEEQYGGQALPNSLGIAISEMVGSSNwawGMYP 129
Cdd:cd01160   13 FFAKEVAPFHHEWEK------AGEVP-----REVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELARAG---GSGP 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 130 GLS-HGAVRT--LEHHGSDEQKNTYLPNLVSGVWTGTMCLTESHAGSDLGIIRTKAEPNADgSYAISGEKIFISAGEHdm 206
Cdd:cd01160   79 GLSlHTDIVSpyITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKDGD-HYVLNGSKTFITNGML-- 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 207 aeNIIHIVLARLPGAPKGTKGISLFIVPKfnvNADGTIGERNAvrcgsieHKMGIHGNATCVINFDQA---KGYLIGPEN 283
Cdd:cd01160  156 --ADVVIVVARTGGEARGAGGISLFLVER---GTPGFSRGRKL-------KKMGWKAQDTAELFFDDCrvpAENLLGEEN 223
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 284 RGLNCMFTFMNTARIGTAVQGLAASESSFQGALTYAKERLAMrslsgpkapekeADPIIVHPAVRNMLLTQKAFAEGGRA 363
Cdd:cd01160  224 KGFYYLMQNLPQERLLIAAGALAAAEFMLEETRNYVKQRKAF------------GKTLAQLQVVRHKIAELATKVAVTRA 291
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 364 LVYLLAQyadIVEKGETEeerkfadnilSLLTPIAKAFLTETGSESAKHGVQVFGGHGFISEHGMEQIVRDTRIACLYEG 443
Cdd:cd01160  292 FLDNCAW---RHEQGRLD----------VAEASMAKYWATELQNRVAYECVQLHGGWGYMREYPIARAYRDARVQPIYGG 358
                        410
                 ....*....|....*
gi 820954271 444 TTEIQaLDLLGRKVL 458
Cdd:cd01160  359 TTEIM-KELISRQMV 372
IBD cd01162
Isobutyryl-CoA dehydrogenase; Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- ...
44-459 9.87e-42

Isobutyryl-CoA dehydrogenase; Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.


Pssm-ID: 173851 [Multi-domain]  Cd Length: 375  Bit Score: 154.91  E-value: 9.87e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271  44 LEAAADFCENELSPLNQVGDREGctwndgvvTTPTgfkEAYQKYIELGFPSLSAEEQYGGQALPNSLGIAISEMVGSSNW 123
Cdd:cd01162    9 QEVARAFAAKEMAPHAADWDQKK--------HFPV---DVLRKAAELGFGGIYIRDDVGGSGLSRLDASIIFEALSTGCV 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 124 AWGMYPGLSHGAVRTLEHHGSDEQKNTYLPNLVSGVWTGTMCLTESHAGSDLGIIRTKAEPNADgSYAISGEKIFIS-AG 202
Cdd:cd01162   78 STAAYISIHNMCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVREGD-HYVLNGSKAFISgAG 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 203 EHDmaeniIHIVLARLPGapKGTKGISLFIVPKfnvnadGTIGernaVRCGSIEHKMGIHGNATCVINFDQAK---GYLI 279
Cdd:cd01162  157 DSD-----VYVVMARTGG--EGPKGISCFVVEK------GTPG----LSFGANEKKMGWNAQPTRAVIFEDCRvpvENRL 219
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 280 GPENRGLNCMFTFMNTARIGTAVQGLAASESSFQGALTYAKERLAMrslsgpkapekeADPIIVHPAVRNMLLTQKAFAE 359
Cdd:cd01162  220 GGEGQGFGIAMAGLNGGRLNIASCSLGAAQAALDLARAYLEERKQF------------GKPLADFQALQFKLADMATELV 287
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 360 GGRALVYLLAQYADivekgeteeeRKFADNILslLTPIAKAFLTETGSESAKHGVQVFGGHGFISEHGMEQIVRDTRIAC 439
Cdd:cd01162  288 ASRLMVRRAASALD----------RGDPDAVK--LCAMAKRFATDECFDVANQALQLHGGYGYLKDYPVEQYVRDLRVHQ 355
                        410       420
                 ....*....|....*....|
gi 820954271 440 LYEGTTEIQALdLLGRKVLQ 459
Cdd:cd01162  356 ILEGTNEIMRL-IIARALLT 374
VLCAD cd01161
Very long chain acyl-CoA dehydrogenase; VLCAD is an acyl-CoA dehydrogenase (ACAD), which is ...
81-450 9.20e-38

Very long chain acyl-CoA dehydrogenase; VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.


Pssm-ID: 173850 [Multi-domain]  Cd Length: 409  Bit Score: 144.53  E-value: 9.20e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271  81 KEAYQKYIELGFPSLSAEEQYGGQALPNSLGIAISEMVGssnwawgMYPGLS-----HGAVRTLE--HHGSDEQKNTYLP 153
Cdd:cd01161   59 RKTLTQLKELGLFGLQVPEEYGGLGLNNTQYARLAEIVG-------MDLGFSvtlgaHQSIGFKGilLFGTEAQKEKYLP 131
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 154 NLVSGVWTGTMCLTESHAGSDLGIIRTKAEPNADGS-YAISGEKIFISAGehDMAEniIHIVLARLP-----GAPKgtKG 227
Cdd:cd01161  132 KLASGEWIAAFALTEPSSGSDAASIRTTAVLSEDGKhYVLNGSKIWITNG--GIAD--IFTVFAKTEvkdatGSVK--DK 205
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 228 ISLFIVpkfnvnadgtigERN--AVRCGSIEHKMGIHGNATCVINFDQAK---GYLIGPENRGLNCMFTFMNTARIGTAV 302
Cdd:cd01161  206 ITAFIV------------ERSfgGVTNGPPEKKMGIKGSNTAEVYFEDVKipvENVLGEVGDGFKVAMNILNNGRFGMGA 273
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 303 QGLAASESSFQGALTYAKERLAMRslsgpkapEKEADPIIVHPAVRNMLLTQKAfAEggrALVYLLAQYADivekgetee 382
Cdd:cd01161  274 ALIGTMKRCIEKAVDYANNRKQFG--------KKIHEFGLIQEKLANMAILQYA-TE---SMAYMTSGNMD--------- 332
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 820954271 383 ERKFADniLSLLTPIAKAFLTETGSESAKHGVQVFGGHGFISEHGMEQIVRDTRIACLYEGTTEIQAL 450
Cdd:cd01161  333 RGLKAE--YQIEAAISKVFASEAAWLVVDEAIQIHGGMGFMREYGVERVLRDLRIFRIFEGTNEILRL 398
IVD cd01156
Isovaleryl-CoA dehydrogenase; Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA ...
38-455 1.51e-33

Isovaleryl-CoA dehydrogenase; Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.


Pssm-ID: 173845 [Multi-domain]  Cd Length: 376  Bit Score: 131.76  E-value: 1.51e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271  38 ELVDQYLEAAADFCENELSPLNQVGDREgctwndgvvttpTGF-KEAYQKYIELGFPSLSAEEQYGGQALPN-SLGIAIS 115
Cdd:cd01156    4 DEIEMLRQSVREFAQKEIAPLAAKIDRD------------NEFpRDLWRKMGKLGLLGITAPEEYGGSGMGYlAHVIIME 71
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 116 EMVGSSNWAwgmypGLSHGA-----VRTLEHHGSDEQKNTYLPNLVSGVWTGTMCLTESHAGSDLGIIRTKAEpNADGSY 190
Cdd:cd01156   72 EISRASGSV-----ALSYGAhsnlcINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAE-KKGDRY 145
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 191 AISGEKIFISAGEHdmAEniIHIVLARlPGAPKGTKGISLFIVPKfnvnadgtiGERNAVRCGSIEhKMGIHGNATCVIN 270
Cdd:cd01156  146 VLNGSKMWITNGPD--AD--TLVVYAK-TDPSAGAHGITAFIVEK---------GMPGFSRAQKLD-KLGMRGSNTCELV 210
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 271 FDQAK---GYLIGPENRGLNCMFTFMNTARIGTAVQGLAASESSFQGALTYAKERLAMrslsGPKAPEKEadpiIVHPAV 347
Cdd:cd01156  211 FEDCEvpeENILGGENKGVYVLMSGLDYERLVLAGGPIGIMQAALDVAIPYAHQRKQF----GQPIGEFQ----LVQGKL 282
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 348 RNMLLTQKAfaegGRALVYLLAQYADiveKGETeEERKFADNILslltpiakaFLTETGSESAKHGVQVFGGHGFISEHG 427
Cdd:cd01156  283 ADMYTRLNA----SRSYLYTVAKACD---RGNM-DPKDAAGVIL---------YAAEKATQVALDAIQILGGNGYINDYP 345
                        410       420       430
                 ....*....|....*....|....*....|.
gi 820954271 428 MEQIVRDtriACLYE---GTTEIQALdLLGR 455
Cdd:cd01156  346 TGRLLRD---AKLYEigaGTSEIRRM-VIGR 372
PRK11561 PRK11561
isovaleryl CoA dehydrogenase; Provisional
164-465 3.27e-26

isovaleryl CoA dehydrogenase; Provisional


Pssm-ID: 183199 [Multi-domain]  Cd Length: 538  Bit Score: 112.92  E-value: 3.27e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 164 MCLTESHAGSDLGIIRTKAEPNADGSYAISGEKIFISAGEHDMaeniiHIVLARLPGapkgtkGISLFIVPKFNVNadgt 243
Cdd:PRK11561 182 MGMTEKQGGSDVLSNTTRAERLADGSYRLVGHKWFFSVPQSDA-----HLVLAQAKG------GLSCFFVPRFLPD---- 246
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 244 iGERNAVRCGSIEHKMGIHGNATCVINFDQAKGYLIGPENRGLNCMFTFMNTARIGTAVQGLAASESSFQGALTYAKERL 323
Cdd:PRK11561 247 -GQRNAIRLERLKDKLGNRSNASSEVEFQDAIGWLLGEEGEGIRLILKMGGMTRFDCALGSHGLMRRAFSVAIYHAHQRQ 325
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 324 AMrslsgpkapekeADPIIVHPAVRNMLLTQKAFAEGGRALVYLLAQYADiveKGETEEERKFAdnilSLLTPIAKAFLT 403
Cdd:PRK11561 326 VF------------GKPLIEQPLMRQVLSRMALQLEGQTALLFRLARAWD---RRADAKEALWA----RLFTPAAKFVIC 386
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 820954271 404 ETGSESAKHGVQVFGGHGFISEHGMEQIVRDTRIACLYEGTTEIQALDLLgrKVLQTQGAML 465
Cdd:PRK11561 387 KRGIPFVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVL--RVLNKQPGVY 446
MCAD cd01157
Medium chain acyl-CoA dehydrogenase; MCADs are mitochondrial beta-oxidation enzymes, which ...
143-458 1.21e-25

Medium chain acyl-CoA dehydrogenase; MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.


Pssm-ID: 173846 [Multi-domain]  Cd Length: 378  Bit Score: 108.83  E-value: 1.21e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 143 GSDEQKNTYLPNLVSGVWTGTMCLTESHAGSDLGIIRTKAEPNADgSYAISGEKIFISAGEHDMAeniiHIVLARLPGAP 222
Cdd:cd01157   97 GNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGD-EYIINGQKMWITNGGKANW----YFLLARSDPDP 171
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 223 K--GTKGISLFIVPkfnvnadgtiGERNAVRCGSIEHKMGIHGNATCVINFDQ----AKGYLIGPENRGLNCMFTFMNTa 296
Cdd:cd01157  172 KcpASKAFTGFIVE----------ADTPGIQPGRKELNMGQRCSDTRGITFEDvrvpKENVLIGEGAGFKIAMGAFDKT- 240
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 297 RIGTAVQGLAASESSFQGALTYAKERLAMrslsgpkapekeADPIIVHPAVRNMLLTQKAFAEGGRaLVYLLAQYadive 376
Cdd:cd01157  241 RPPVAAGAVGLAQRALDEATKYALERKTF------------GKLIAEHQAVSFMLADMAMKVELAR-LAYQRAAW----- 302
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 377 kgETEEERKFadnilSLLTPIAKAFLTETGSESAKHGVQVFGGHGFISEHGMEQIVRDTRIACLYEGTTEIQALdLLGRK 456
Cdd:cd01157  303 --EVDSGRRN-----TYYASIAKAFAADIANQLATDAVQIFGGNGFNSEYPVEKLMRDAKIYQIYEGTSQIQRL-IISRE 374

                 ..
gi 820954271 457 VL 458
Cdd:cd01157  375 HL 376
GCD cd01151
Glutaryl-CoA dehydrogenase; Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, ...
45-457 1.64e-24

Glutaryl-CoA dehydrogenase; Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.


Pssm-ID: 173840 [Multi-domain]  Cd Length: 386  Bit Score: 105.90  E-value: 1.64e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271  45 EAAADFCENELSPLNQVGDREGCTwndgvvttptgFKEAYQKYIELGFPSLSAEEqYGGQALPN-SLGIAISEMVGSSNW 123
Cdd:cd01151   22 DTAREFCQEELAPRVLEAYREEKF-----------DRKIIEEMGELGLLGATIKG-YGCAGLSSvAYGLIAREVERVDSG 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 124 AWGMYPGLSHGAVRTLEHHGSDEQKNTYLPNLVSGVWTGTMCLTESHAGSDLGIIRTKAEPNADGsYAISGEKIFIsaGE 203
Cdd:cd01151   90 YRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKDGGG-YKLNGSKTWI--TN 166
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 204 HDMAEniIHIVLARLpgapKGTKGISLFIVPKfnvNADGTIGERnavrcgsIEHKMGIHGNATCVINFDQ---AKGYLIg 280
Cdd:cd01151  167 SPIAD--VFVVWARN----DETGKIRGFILER---GMKGLSAPK-------IQGKFSLRASITGEIVMDNvfvPEENLL- 229
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 281 PENRGLNCMFTFMNTARIGTAVQGLAASESSFQGALTYAKERlamRSLSGPKApekeadpiivhpavRNMLLTQK-AFAE 359
Cdd:cd01151  230 PGAEGLRGPFKCLNNARYGIAWGALGAAEDCYHTARQYVLDR---KQFGRPLA--------------AFQLVQKKlADML 292
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 360 GGRALVYLLAqyadiVEKGETEEERKFADNILSLLtpiaKAFLTETGSESAKHGVQVFGGHGFISEHGMEQIVRDTRIAC 439
Cdd:cd01151  293 TEIALGLLAC-----LRVGRLKDQGKATPEQISLL----KRNNCGKALEIARTAREMLGGNGISDEYHIIRHMVNLESVN 363
                        410
                 ....*....|....*...
gi 820954271 440 LYEGTTEIQALdLLGRKV 457
Cdd:cd01151  364 TYEGTHDIHAL-ILGRAI 380
PLN02519 PLN02519
isovaleryl-CoA dehydrogenase
89-461 6.71e-22

isovaleryl-CoA dehydrogenase


Pssm-ID: 215284 [Multi-domain]  Cd Length: 404  Bit Score: 98.41  E-value: 6.71e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271  89 ELGFPSLSAEEQYGGQALPNSLG-IAISEMVGSSNWAwgmypGLSHGA-----VRTLEHHGSDEQKNTYLPNLVSGVWTG 162
Cdd:PLN02519  70 DFNLHGITAPEEYGGLGLGYLYHcIAMEEISRASGSV-----GLSYGAhsnlcINQLVRNGTPAQKEKYLPKLISGEHVG 144
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 163 TMCLTESHAGSDLGIIRTKAEpNADGSYAISGEKIFISAGEhdMAENIihIVLARLPGApKGTKGISLFIVPKfnvnadG 242
Cdd:PLN02519 145 ALAMSEPNSGSDVVSMKCKAE-RVDGGYVLNGNKMWCTNGP--VAQTL--VVYAKTDVA-AGSKGITAFIIEK------G 212
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 243 TIGERNAVRCgsieHKMGIHGNATCVINFDQA---KGYLIGPENRGLNCMFTFMNTARIGTAVQGLAASESSFQGALTYA 319
Cdd:PLN02519 213 MPGFSTAQKL----DKLGMRGSDTCELVFENCfvpEENVLGQEGKGVYVMMSGLDLERLVLAAGPLGLMQACLDVVLPYV 288
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 320 KERlamrslsgpkapEKEADPIIVHPAVRNMLLTQKAFAEGGRALVYLLAQYADivekGETEEERKFADNILslltpiak 399
Cdd:PLN02519 289 RQR------------EQFGRPIGEFQFIQGKLADMYTSLQSSRSYVYSVARDCD----NGKVDRKDCAGVIL-------- 344
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 820954271 400 aFLTETGSESAKHGVQVFGGHGFISEHGMEQIVRDTRIACLYEGTTEIQALdLLGRKVLQTQ 461
Cdd:PLN02519 345 -CAAERATQVALQAIQCLGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRRM-LIGRELFKEE 404
Acyl-CoA_dh_1 pfam00441
Acyl-CoA dehydrogenase, C-terminal domain; C-terminal domain of Acyl-CoA dehydrogenase is an ...
283-455 6.48e-19

Acyl-CoA dehydrogenase, C-terminal domain; C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.


Pssm-ID: 395354 [Multi-domain]  Cd Length: 149  Bit Score: 83.84  E-value: 6.48e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271  283 NRGLNCMFTFMNTARIGTAVQGLAASESSFQGALTYAKERLAMRSlsgpkapekeadPIIVHPAVRNMLLTQKAFAEGGR 362
Cdd:pfam00441   1 GRGFRVAMETLNHERLAIAAMALGLARRALDEALAYARRRKAFGR------------PLIDFQLVRHKLAEMAAEIEAAR 68
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271  363 ALVYLLAQYADivekgeteeerkfADNILSLLTPIAKAFLTETGSESAKHGVQVFGGHGFISEHGMEQIVRDTRIACLYE 442
Cdd:pfam00441  69 LLVYRAAEALD-------------AGGPDGAEASMAKLYASEAAVEVADLAMQLHGGYGYLREYPVERLYRDARVLRIGE 135
                         170
                  ....*....|...
gi 820954271  443 GTTEIQaLDLLGR 455
Cdd:pfam00441 136 GTSEIQ-RNIIAR 147
Acyl-CoA_dh_M pfam02770
Acyl-CoA dehydrogenase, middle domain; Central domain of Acyl-CoA dehydrogenase has a ...
163-272 6.21e-17

Acyl-CoA dehydrogenase, middle domain; Central domain of Acyl-CoA dehydrogenase has a beta-barrel fold.


Pssm-ID: 460685 [Multi-domain]  Cd Length: 95  Bit Score: 76.16  E-value: 6.21e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271  163 TMCLTESHAGSDLGIIRTKAEPNADGSYAISGEKIFIS-AGEHDmaeniIHIVLARlPGAPKGTKGISLFIVPKfnvNAD 241
Cdd:pfam02770   1 AFALTEPGAGSDVASLKTTAADGDGGGWVLNGTKWWITnAGIAD-----LFLVLAR-TGGDDRHGGISLFLVPK---DAP 71
                          90       100       110
                  ....*....|....*....|....*....|.
gi 820954271  242 GtigernaVRCGSIEHKMGIHGNATCVINFD 272
Cdd:pfam02770  72 G-------VSVRRIETKLGVRGLPTGELVFD 95
PTZ00461 PTZ00461
isovaleryl-CoA dehydrogenase; Provisional
136-446 6.75e-17

isovaleryl-CoA dehydrogenase; Provisional


Pssm-ID: 185640 [Multi-domain]  Cd Length: 410  Bit Score: 83.06  E-value: 6.75e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 136 VRTLEHHGSDEQKNTYLPNLVSGVWTGTMCLTESHAGSDLGIIRTKAEPNADGSYAISGEKIFISAGEhdMAEniIHIVL 215
Cdd:PTZ00461 127 VNNFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITNGT--VAD--VFLIY 202
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 216 ARLPGApkgtkgISLFIVPKfnvnadGTIGernaVRCGSIEHKMGIHGNATCVINFDQA---KGYLIGPENRGLNCMFTF 292
Cdd:PTZ00461 203 AKVDGK------ITAFVVER------GTKG----FTQGPKIDKCGMRASHMCQLFFEDVvvpAENLLGEEGKGMVGMMRN 266
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 293 MNTARIGTAVQGLAASESSFQGALTYAKERLAMrslsgpkapekeADPIIVHPAVRNMLLTQKAFAEGGRALVYLLAQYA 372
Cdd:PTZ00461 267 LELERVTLAAMAVGIAERSVELMTSYASERKAF------------GKPISNFGQIQRYIAEGYADTEAAKALVYSVSHNV 334
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 820954271 373 divekGETEEERKFADNILSLLTPIAKafltetgsESAKHGVQVFGGHGFISEHGMEQIVRDTRIACLYEGTTE 446
Cdd:PTZ00461 335 -----HPGNKNRLGSDAAKLFATPIAK--------KVADSAIQVMGGMGYSRDMPVERLWRDAKLLEIGGGTIE 395
ACAD_fadE6_17_26 cd01152
Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26; Putative acyl-CoA ...
138-459 7.12e-16

Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26; Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.


Pssm-ID: 173841 [Multi-domain]  Cd Length: 380  Bit Score: 79.70  E-value: 7.12e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 138 TLEHHGSDEQKNTYLPNLVSG--VWtgtmCL--TESHAGSDLGIIRTKAEPNADGsYAISGEKIFISAGEhdmaENIIHI 213
Cdd:cd01152   95 TILAYGTDEQKRRFLPPILSGeeIW----CQgfSEPGAGSDLAGLRTRAVRDGDD-WVVNGQKIWTSGAH----YADWAW 165
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 214 VLARLPGAPKGTKGISLFIVPkfnVNADGtigernaVRCGSIEHKMGIHGnaTCVINFDQAK---GYLIGPENRGLN-CM 289
Cdd:cd01152  166 LLVRTDPEAPKHRGISILLVD---MDSPG-------VTVRPIRSINGGEF--FNEVFLDDVRvpdANRVGEVNDGWKvAM 233
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 290 FTFMNtarigtavqglaasESSFQGAlTYAK--ERLAMRSLSGPKAPEKEADpiivHPAVRNMLLTQKAFAEGGRALVYL 367
Cdd:cd01152  234 TTLNF--------------ERVSIGG-SAATffELLLARLLLLTRDGRPLID----DPLVRQRLARLEAEAEALRLLVFR 294
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 368 LAQYADivekgetEEERKFADNilslltPIAKAFLTETGSESAKHGVQVFGGHGFISEHGMEQIV--------RDTRIAC 439
Cdd:cd01152  295 LASALA-------AGKPPGAEA------SIAKLFGSELAQELAELALELLGTAALLRDPAPGAELagrweadyLRSRATT 361
                        330       340
                 ....*....|....*....|
gi 820954271 440 LYEGTTEIQaLDLLGRKVLQ 459
Cdd:cd01152  362 IYGGTSEIQ-RNIIAERLLG 380
Acyl-CoA_dh_N pfam02771
Acyl-CoA dehydrogenase, N-terminal domain; The N-terminal domain of Acyl-CoA dehydrogenase is ...
45-158 2.52e-11

Acyl-CoA dehydrogenase, N-terminal domain; The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain.


Pssm-ID: 460686 [Multi-domain]  Cd Length: 113  Bit Score: 60.94  E-value: 2.52e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271   45 EAAADFCENELSPLNQVGDREGctwndgvvttpTGFKEAYQKYIELGFPSLSAEEQYGGQALPNSLGIAISEMVGSSNWA 124
Cdd:pfam02771   9 DTVREFAEEEIAPHAAEWDEEG-----------EFPRELWKKLGELGLLGITIPEEYGGAGLDYLAYALVAEELARADAS 77
                          90       100       110
                  ....*....|....*....|....*....|....*
gi 820954271  125 WGMYPGLSHG-AVRTLEHHGSDEQKNTYLPNLVSG 158
Cdd:pfam02771  78 VALALSVHSSlGAPPILRFGTEEQKERYLPKLASG 112
PRK03354 PRK03354
crotonobetainyl-CoA dehydrogenase; Validated
89-459 5.57e-11

crotonobetainyl-CoA dehydrogenase; Validated


Pssm-ID: 179566 [Multi-domain]  Cd Length: 380  Bit Score: 64.47  E-value: 5.57e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271  89 ELGFPSLSAEEQYGGQALPNSLGIAISEMVGSSNWAWGMYPGLSHGaVRTLEHHGSDEQKNTYLPNLVSG--VWTGTMcl 166
Cdd:PRK03354  48 DMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRLGAPTYVLYQLPGG-FNTFLREGTQEQIDKIMAFRGTGkqMWNSAI-- 124
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 167 TESHAGSDLGIIRTKAEpNADGSYAISGEKIFISAGehdmAENIIHIVLARLPGAPKGTKGISLFIvpkfNVNADGTIGE 246
Cdd:PRK03354 125 TEPGAGSDVGSLKTTYT-RRNGKVYLNGSKCFITSS----AYTPYIVVMARDGASPDKPVYTEWFV----DMSKPGIKVT 195
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 247 RnavrcgsiEHKMGIHGNATCVINFDQA---KGYLIGPENRGLNCMFTFMNTARIGTAVQGLAASESSFQGALTYAKERL 323
Cdd:PRK03354 196 K--------LEKLGLRMDSCCEITFDDVeldEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRV 267
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 324 AMRSLSGPKA--PEKEADPIIVHPAVRNMLltqkafaeggralvYLLAQYADivekgeteeerkfADNILSLLTPIAKAF 401
Cdd:PRK03354 268 QFGEAIGRFQliQEKFAHMAIKLNSMKNML--------------YEAAWKAD-------------NGTITSGDAAMCKYF 320
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 820954271 402 LTETGSESAKHGVQVFGGHGFISEHGMEQIVRDTRIACLYEGTTEIQALDlLGRKVLQ 459
Cdd:PRK03354 321 CANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILT-LGRAVLK 377
PLN02526 PLN02526
acyl-coenzyme A oxidase
135-457 3.07e-10

acyl-coenzyme A oxidase


Pssm-ID: 178141 [Multi-domain]  Cd Length: 412  Bit Score: 62.56  E-value: 3.07e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 135 AVRTLEHHGSDEQKNTYLPNLVSGVWTGTMCLTESHAGSDLGIIRTKAEpNADGSYAISGEKIFIsaGEHDMAEniIHIV 214
Cdd:PLN02526 117 AMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTTAT-KVEGGWILNGQKRWI--GNSTFAD--VLVI 191
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 215 LARlpgaPKGTKGISLFIVPKfnvnadGTIGernaVRCGSIEHKMGIHGNATCVINFDQAkgyLIGPENR--GLNcmfTF 292
Cdd:PLN02526 192 FAR----NTTTNQINGFIVKK------GAPG----LKATKIENKIGLRMVQNGDIVLKDV---FVPDEDRlpGVN---SF 251
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 293 MNT------ARIGTAVQGLAASESSFQGALTYAKERlamRSLSGPKAPEKEADPIIVHpavrnMLLTQKAFAEGGRALVY 366
Cdd:PLN02526 252 QDTnkvlavSRVMVAWQPIGISMGVYDMCHRYLKER---KQFGAPLAAFQINQEKLVR-----MLGNIQAMFLVGWRLCK 323
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 367 LLaqyadivEKGEteeerkfadnilslLTP----IAKAFLTETGSESAKHGVQVFGGHGFISEHGMEQIVRDTRIACLYE 442
Cdd:PLN02526 324 LY-------ESGK--------------MTPghasLGKAWITKKARETVALGRELLGGNGILADFLVAKAFCDLEPIYTYE 382
                        330
                 ....*....|....*
gi 820954271 443 GTTEIQALdLLGRKV 457
Cdd:PLN02526 383 GTYDINAL-VTGREI 396
AcylCoA_DH_N pfam12418
Acyl-CoA dehydrogenase N terminal; This domain family is found in bacteria and eukaryotes, and ...
3-32 5.94e-10

Acyl-CoA dehydrogenase N terminal; This domain family is found in bacteria and eukaryotes, and is approximately 30 amino acids in length. The family is found in association with pfam02770, pfam00441, pfam02771. This family is one of the enzymes involved in AcylCoA interaction in beta-oxidation.


Pssm-ID: 463571  Cd Length: 32  Bit Score: 54.27  E-value: 5.94e-10
                          10        20        30
                  ....*....|....*....|....*....|
gi 820954271    3 QYKAPLRDMQFVLHELLNAEEhYAKLPDFQ 32
Cdd:pfam12418   1 SYKAPLRDMRFVLYEVLGAEA-LAALPGFA 29
AXO cd01150
Peroxisomal acyl-CoA oxidase; Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in ...
113-443 1.46e-09

Peroxisomal acyl-CoA oxidase; Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.


Pssm-ID: 173839 [Multi-domain]  Cd Length: 610  Bit Score: 60.81  E-value: 1.46e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 113 AISEMVGSSNWAWGMYPGLSHG-AVRTLEHHGSDEQKNTYLPNLVSGVWTGTMCLTESHAGSDLGIIRTKA--EPNAD-- 187
Cdd:cd01150   86 ALTNSLGGYDLSLGAKLGLHLGlFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTAtyDPLTQef 165
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 188 --GSYAISGEKIFISagehDMAENIIH-IVLARL--PGAPKGTKGislFIVPkfnVNADGTIGERNAVRCGSIEHKMGIH 262
Cdd:cd01150  166 viNTPDFTATKWWPG----NLGKTATHaVVFAQLitPGKNHGLHA---FIVP---IRDPKTHQPLPGVTVGDIGPKMGLN 235
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 263 GnatcVIN-FDQAKGYLIgPENRGLNCM-------------------FTFMNTARIGTAVQGLAASESSFQGALTYAKER 322
Cdd:cd01150  236 G----VDNgFLQFRNVRI-PRENLLNRFgdvspdgtyvspfkdpnkrYGAMLGTRSGGRVGLIYDAAMSLKKAATIAIRY 310
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 323 LAMRSLSGPKAPEKEAdPIIVHPAVRNMLLTQKAFAEGGR-ALVYLLAQYADIVEKGETEEERKFADniLSLLTPIAKAF 401
Cdd:cd01150  311 SAVRRQFGPKPSDPEV-QILDYQLQQYRLFPQLAAAYAFHfAAKSLVEMYHEIIKELLQGNSELLAE--LHALSAGLKAV 387
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 820954271 402 LTETGSESAKHGVQVFGGHGFISEHGMEQIVRDTRIACLYEG 443
Cdd:cd01150  388 ATWTAAQGIQECREACGGHGYLAMNRLPTLRDDNDPFCTYEG 429
PRK13026 PRK13026
acyl-CoA dehydrogenase; Reviewed
81-178 1.23e-04

acyl-CoA dehydrogenase; Reviewed


Pssm-ID: 237277 [Multi-domain]  Cd Length: 774  Bit Score: 44.95  E-value: 1.23e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271  81 KEAYQKYIELGFPSLSAEEQYGGQ---ALPNS----------LGIAISEMVGSSnwawgMYPGlshgavRTLEHHGSDEQ 147
Cdd:PRK13026 111 PEVWDYLKKEGFFALIIPKEYGGKgfsAYANStivskiatrsVSAAVTVMVPNS-----LGPG------ELLTHYGTQEQ 179
                         90       100       110
                 ....*....|....*....|....*....|.
gi 820954271 148 KNTYLPNLVSGVWTGTMCLTESHAGSDLGII 178
Cdd:PRK13026 180 KDYWLPRLADGTEIPCFALTGPEAGSDAGAI 210
fadE PRK09463
acyl-CoA dehydrogenase; Reviewed
107-178 7.49e-04

acyl-CoA dehydrogenase; Reviewed


Pssm-ID: 236528 [Multi-domain]  Cd Length: 777  Bit Score: 42.50  E-value: 7.49e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 820954271 107 PNSLGiaisemvgssnwawgmyPGlshgavRTLEHHGSDEQKNTYLPNLVSGVWTGTMCLTESHAGSDLGII 178
Cdd:PRK09463 163 PNSLG-----------------PG------ELLLHYGTDEQKDHYLPRLARGEEIPCFALTSPEAGSDAGSI 211
PTZ00457 PTZ00457
acyl-CoA dehydrogenase; Provisional
100-252 1.92e-03

acyl-CoA dehydrogenase; Provisional


Pssm-ID: 185636 [Multi-domain]  Cd Length: 520  Bit Score: 41.02  E-value: 1.92e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 100 QYGGQALPNSLGIAISEMVGSSNWAwGMYPGLSHGAVRT--LEHHGSDEQKNTYLpnlvSGVWTGTMCL---TESHAGSD 174
Cdd:PTZ00457  73 EYGGLGLGHTAHALIYEEVGTNCDS-KLLSTIQHSGFCTylLSTVGSKELKGKYL----TAMSDGTIMMgwaTEEGCGSD 147
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271 175 LGIIRTKAEPNADGSYAISGEK--IFISAGEH--DMAENIIHIVLARlpgAPKGTKGISLFIVPK----FNVNADGTIGE 246
Cdd:PTZ00457 148 ISMNTTKASLTDDGSYVLTGQKrcEFAASATHflVLAKTLTQTAAEE---GATEVSRNSFFICAKdakgVSVNGDSVVFE 224

                 ....*.
gi 820954271 247 RNAVRC 252
Cdd:PTZ00457 225 NTPAAD 230
Acyl-CoA_dh_2 pfam08028
Acyl-CoA dehydrogenase, C-terminal domain;
301-446 1.95e-03

Acyl-CoA dehydrogenase, C-terminal domain;


Pssm-ID: 429790 [Multi-domain]  Cd Length: 133  Bit Score: 38.87  E-value: 1.95e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 820954271  301 AVQGLAASESSFQGALTYAKERLAMRSlsgpkapekeADPIIVHPAVRNMLLTQKAFAEGGRALVYllAQYADIVEKGET 380
Cdd:pfam08028   3 AAAALGAARAALAEFTERARGRVRAYF----------GVPLAEDPATQLALAEAAARIDAARLLLE--RAAARIEAAAAA 70
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 820954271  381 EEERKFADnilSLLTPIAKAFLTETGSESAKHGVQVFGGHGFISEHGMEQIVRDTRIACLYEGTTE 446
Cdd:pfam08028  71 GKPVTPAL---RAEARRAAAFATELAVAAVDALFRAAGGSALFQDSPLQRIWRDIHAAAQHAAVNP 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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