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Conserved domains on  [gi|822551747|ref|WP_046979109|]
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GFA family protein [Luteibacter rhizovicinus]

Protein Classification

GFA family protein( domain architecture ID 10007990)

GFA family protein similar to bacterial glutathione-dependent formaldehyde-activating enzyme, which catalyzes the condensation of formaldehyde and glutathione to S-hydroxymethylglutathione, and to eukaryotic centromere protein V, which plays a role in the distribution of pericentromeric heterochromatin in interphase nuclei

CATH:  2.170.150.70
Gene Ontology:  GO:0016846|GO:0046872

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG3791 COG3791
Uncharacterized conserved protein [Function unknown];
1-111 1.75e-15

Uncharacterized conserved protein [Function unknown];


:

Pssm-ID: 443005  Cd Length: 132  Bit Score: 68.12  E-value: 1.75e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 822551747   1 MLIHGSCHCGNLSFElvwpVASETIAARACSCTFCVKHGARWTANAA----AGLTVHRKDASLVEaYAFgTKTADFHVCK 76
Cdd:COG3791    2 MTLTGSCLCGAVRFE----VDGPPLRVGACHCSICRKATGSAFAAVAlvpaDAFRLTSGEDALTT-YRS-SATAERHFCP 75

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 822551747  77 VCGVVACSTSRIDGRLYAvVNVNSFDDFDASRLVI 111
Cdd:COG3791   76 TCGSPLFYRRRGGPGLVA-VNAGLLDDPDGLPPTA 109
 
Name Accession Description Interval E-value
COG3791 COG3791
Uncharacterized conserved protein [Function unknown];
1-111 1.75e-15

Uncharacterized conserved protein [Function unknown];


Pssm-ID: 443005  Cd Length: 132  Bit Score: 68.12  E-value: 1.75e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 822551747   1 MLIHGSCHCGNLSFElvwpVASETIAARACSCTFCVKHGARWTANAA----AGLTVHRKDASLVEaYAFgTKTADFHVCK 76
Cdd:COG3791    2 MTLTGSCLCGAVRFE----VDGPPLRVGACHCSICRKATGSAFAAVAlvpaDAFRLTSGEDALTT-YRS-SATAERHFCP 75

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 822551747  77 VCGVVACSTSRIDGRLYAvVNVNSFDDFDASRLVI 111
Cdd:COG3791   76 TCGSPLFYRRRGGPGLVA-VNAGLLDDPDGLPPTA 109
 
Name Accession Description Interval E-value
COG3791 COG3791
Uncharacterized conserved protein [Function unknown];
1-111 1.75e-15

Uncharacterized conserved protein [Function unknown];


Pssm-ID: 443005  Cd Length: 132  Bit Score: 68.12  E-value: 1.75e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 822551747   1 MLIHGSCHCGNLSFElvwpVASETIAARACSCTFCVKHGARWTANAA----AGLTVHRKDASLVEaYAFgTKTADFHVCK 76
Cdd:COG3791    2 MTLTGSCLCGAVRFE----VDGPPLRVGACHCSICRKATGSAFAAVAlvpaDAFRLTSGEDALTT-YRS-SATAERHFCP 75

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 822551747  77 VCGVVACSTSRIDGRLYAvVNVNSFDDFDASRLVI 111
Cdd:COG3791   76 TCGSPLFYRRRGGPGLVA-VNAGLLDDPDGLPPTA 109
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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