|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13700 |
PRK13700 |
conjugal transfer protein TraD; Provisional |
1-768 |
0e+00 |
|
conjugal transfer protein TraD; Provisional
Pssm-ID: 184256 [Multi-domain] Cd Length: 732 Bit Score: 1479.44 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 1 MSFNAKDMTQGGQIANMRFRMFGQIANIIFYVLFILFWVLCGLMLMYRLSWQTFVNGCVYWWCTTLGPMRDIIRSQPVYT 80
Cdd:PRK13700 1 MSFNAKDMTQGGQIASMRIRMFSQIANIILYCLFIFFWILVGLVLWVKISWQTFVNGCIYWWCTTLEGMRDLIKSQPVYE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 81 IQYYGQSLEYTSEQILADKYTIWCGEQLWTSFVFAAVVSLVICIVTFFIASWVLGRQGKQQSEDENTGGRQLSDKPKEVA 160
Cdd:PRK13700 81 IQYYGKTFRMNAAQVLHDKYMIWCGEQLWSAFVLAAVVALVICLITFFVVSWILGRQGKQQSENEVTGGRQLTDNPKDVA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 161 RQMKRDGMASDIKIGDLPILKNSEIQNFCLHGTVGSGKSEVIRRLLNYVRARGDMAIIYDRSCEFVKSYYDPSLDKILNP 240
Cdd:PRK13700 161 RMLKKDGKDSDIRIGDLPIIRDSEIQNFCLHGTVGAGKSEVIRRLANYARQRGDMVVIYDRSGEFVKSYYDPSIDKILNP 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 241 LDSRCAAWDLWKECLTLPDFDNISNTLIPMGTKEDPFWQGSGRTIFAEGAYLMREDKDRSYEKLVDTMLSIKIDKLRAYL 320
Cdd:PRK13700 241 LDARCAAWDLWKECLTQPDFDNTANTLIPMGTKEDPFWQGSGRTIFAEAAYLMRNDPNRSYSKLVDTLLSIKIEKLRTYL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 321 QNTPAANLVEEKIEKTAISIRAVLTNYVKAIRYLQGIEKNGEPFTIRDWMRGVREDRPNGWLFISSNADTHASLKPVISM 400
Cdd:PRK13700 321 RNSPAANLVEEKIEKTAISIRAVLTNYVKAIRYLQGIEHNGEPFTIRDWMRGVREDQKNGWLFISSNADTHASLKPVISM 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 401 WLSIAIRGLLAMGENRNRRVWIFADELPTLHKLPDLVEILPEARKFGGCYVFGIQSYAQLEDIYGVKPAATLFDVMNTRA 480
Cdd:PRK13700 401 WLSIAIRGLLAMGENRNRRVWFFCDELPTLHKLPDLVEILPEARKFGGCYVFGIQSYAQLEDIYGEKAAATLFDVMNTRA 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 481 FFRSPSKEIAEFAAGEIGEKEILKASEQYSYGADPVRDGVSTGKEKERETLVSYSDIQTLPDLSCYVTLPGPYPAVKLAL 560
Cdd:PRK13700 481 FFRSPSHKIAEFAAGEIGEKEHLKASEQYSYGADPVRDGVSTGKDMERQTLVSYSDIQSLPDLTCYVTLPGPYPAVKLSL 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 561 KYKPRPKIAEGFIQRRLDTRVDARLSALLEAREAEGSLARALFTPDAPEPGPADTDSHAGeqpepvsqpaPAEVTVSPAP 640
Cdd:PRK13700 561 KYQARPKVAPEFIPRDINPEMENRLSAVLAAREAEGRQMASLFEPDVPEVASGEDVTQAE----------QPQQPQQPQQ 630
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 641 VKAPPTTKSPAAePSARAAEppvlrvttvplikpkaaaaaaaaatASSVGTPAAGGTEQELAQQSAEQGQEMLPAGMNED 720
Cdd:PRK13700 631 PQQPQQPQQPVS-PVINDKK-------------------------SDAGVNVPAGGIEQELKMKPEEEMEQQLPPGISES 684
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|
gi 835812308 721 GVIEDMQAYDAWLADEQ--TQRDMQRREEVNINrSHRHDEQdDVEIGGNF 768
Cdd:PRK13700 685 GEVVDMAAYEAWQQENHpdIQQQMQRREEVNIN-VHRERGE-DVEPGDDF 732
|
|
| TraD_Ftype |
TIGR02759 |
type IV conjugative transfer system coupling protein TraD; The TraD protein performs an ... |
8-575 |
0e+00 |
|
type IV conjugative transfer system coupling protein TraD; The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Pssm-ID: 131806 Cd Length: 566 Bit Score: 859.39 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 8 MTQGGQIANMRFRMFGQIANIIFYVLFILFWVLCGLMLMYRLSWQTFvNGCVYWWCTTLGPMRDIIRSQPVYTIqYYGQS 87
Cdd:TIGR02759 1 FTRGGQITFHNIRMFFQVTKTLFYWMFILFIILTGLILWFMASVNTF-LGNIYYWEAQLFTLVGHIKTQEVFTP-WFGKT 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 88 LEYTSEQILADKYTIWCGEQLWTSFVFAAVVSLVICIVTFFIASWVLGRQGKQQSEDENTGGRQLSDkPKEVARQMKRDG 167
Cdd:TIGR02759 79 YTTYQAQILTNPYVIRAYDQLWQALQKSALAALAISLVVFLLFMFFFIKRGEQQSKDHFIRGSQLSS-PKELIKKLKKSR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 168 MASDIKIGDLPILK-NSEIQNFCLHGTVGSGKSEVIRRLLNYVRARGDMAIIYDRSCEFVKSYYDPSLDKILNPLDSRCA 246
Cdd:TIGR02759 158 RASDIKIGGLPLIKfGSETQHILIHGTTGSGKSVAIRKLLRWIRQRGDRAIIYDKGCTFTSRFYDPSQDVILNPFDERCA 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 247 AWDLWKECLTLPDFDNISNTLIPMGTKEDPFWQGSGRTIFAEGAYLMREDKDRSYEKLVDTMLSIKIDKLRAYLQNTPAA 326
Cdd:TIGR02759 238 NWDVWRECKDKTDFENMAEALIPMHGDGDPFWVDSARTIFTSTAYKMRNDPKRSTSKLLDLLLTSELEELRDYLKGTESA 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 327 NLVEEKIEKTAISIRAVLTNYVKAIRYLQGIEKNG-EPFTIRDWmrgVREDRPNGWLFISSNADTHASLKPVISMWLSIA 405
Cdd:TIGR02759 318 SLVSDKIEKTAISIKSVLATYLKSLRFLEGLDRKGrEPFSIRDW---ILNEQKNGWLFISSNAQQHASLKPLISMWLSIA 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 406 IRGLLAMGENRNRRVWIFADELPTLHKLPDLVEILPEARKFGGCYVFGIQSYAQLEDIYGVKPAATLFDVMNTRAFFRSP 485
Cdd:TIGR02759 395 SRGLLSLPPNDDRRIWFIMDELPSLHKLPDLDETIAEVRKFGGCYVLGIQSFAQLEKIYGQNGAATLFDLLNTRFFFRSP 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 486 SKEIAEFAAGEIGEKEILKASEQYSYGADPVRDGVSTGKEKERETLVSYSDIQTLPDLSCYVTLPGPYPAVKLALKYKPR 565
Cdd:TIGR02759 475 SAKMAKIVSDDLGEQEIEESKENYSYGANSVRDGVSLGSQTITRPLVSYSDIQFLDDLQCYVRLPGNYPITKLKLKYDER 554
|
570
....*....|
gi 835812308 566 PKIAEGFIQR 575
Cdd:TIGR02759 555 PKICPPFIPR 564
|
|
| TrwB_AAD_bind |
pfam10412 |
Type IV secretion-system coupling protein DNA-binding domain; The plasmid conjugative coupling ... |
174-561 |
7.77e-131 |
|
Type IV secretion-system coupling protein DNA-binding domain; The plasmid conjugative coupling protein TrwB forms hexamers from six structurally very similar protomers. This hexamer contains a central channel running from the cytosolic pole (made up by the AADs) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB_AAD (all-alpha domain) domain appears to be the DNA-binding domain of the structure. TrwB, a basic integral inner-membrane nucleoside-triphosphate-binding protein, is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells and export.
Pssm-ID: 431268 [Multi-domain] Cd Length: 386 Bit Score: 393.97 E-value: 7.77e-131
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 174 IGDLPILKNSEIQNFCLHGTVGSGKSEVIRRLLNYVRARGDMAIIYDRSCEFVKSYYDPSLDKILNPLDSRCAAWDLWKE 253
Cdd:pfam10412 4 IAGVPLPKRSETRHTLIIGTTGSGKTQALRGLLDQARARGDRAIIFDLTGAFTERFYDPGRDILLNPLDARSPAWSPFAE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 254 CLTLPDFDNISNTLIP-MGTKEDPFWQGSGRTIFAEGAYLMREDKDRSYEKLVDTMLSIKIDKLRAYLQNTPAANLVEEK 332
Cdd:pfam10412 84 CKTPADFAAIAAALIPeDGGGSDPFWALAARTVLVDTLRALQRTGRKTNAALLRALLTADLDELHELLAGTAAAPLTAPE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 333 IEKTAISIRAVLTNYVKAIRYLQGiekNGEPFTIRDWmrgVREDRPNGWLFISSNADTHASLKPVISMWLSIAIRGLLAM 412
Cdd:pfam10412 164 AERTTASIRATLATNLRALRFLAP---DGERFSIREW---ITEEDPGGWLFITYRADQRAALRPLLSCWLDLAIRALLSL 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 413 GENRNRRVWIFADELPTLHKLPDLVEILPEARKFGGCYVFGIQSYAQLEDIYGVKPAATLFDVMNTRAFFRSPSKEIAEF 492
Cdd:pfam10412 238 PPSRDRRLWFFLDELPALGRLPSLKDLLAEGRKFGGAVVLGLQSIAQLREIYGEDGAQTILSNCGTKLILRVSDGETAEL 317
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 835812308 493 AAGEIGEKEILKASEQYSYGADPVRDGVSTGKEKERETLVSYSDIQTLPDLSCYVTLPGPYPAVKLALK 561
Cdd:pfam10412 318 CSDLLGDREVERMDESLSYGANNSRDGVTLGRQRRVRPLVLPSEIMNLPRLHGYLKFPDGFPVARVTLP 386
|
|
| VirD4 |
COG3505 |
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, ... |
187-579 |
3.35e-79 |
|
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442728 [Multi-domain] Cd Length: 402 Bit Score: 259.92 E-value: 3.35e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 187 NFCLHGTVGSGKSEVIRRLLNYVRARGDMAIIYDRSCEFVK---SYYDPSLDK--ILNPLD-SRCAAWDLWKECLTLPDF 260
Cdd:COG3505 1 HVLVIGPTGSGKTVGLVIPNLTQLARGESVVVTDPKGDLAEltaGFRRRAGYDvyVFDPFDpERSHRWNPLDEIRDPADA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 261 DNISNTLIPM---GTKEDPFWQGSGRTIFAEGAYLMREDKDRSYEKLVDtMLSIKIDKLRAYLQNTP---------AANL 328
Cdd:COG3505 81 QELAEALIPAlggGGGGDPFWREAARALLAALILALAEEGRRTLADVYR-LLSEPEEELRELLEALPesphppvadTLAA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 329 VEEKIEKTAISIRAVLTNYVKAIRyLQGIEK--NGEPFTIRDWMRGvredrpNGWLFISSNADTHASLKPVISMWLSIAI 406
Cdd:COG3505 160 FLNAAEKTRSSVLSTLASALELLS-DPEVAAltSGSDFDLRDLIRE------KGTLYLVLPPDDLSTLAPLLRLLLSQLI 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 407 RGLLAMGENRNR---RVWIFADELPTLHKLPDLVEILPEARKFGGCYVFGIQSYAQLEDIYGVKPAATLFDVMNTRAFFR 483
Cdd:COG3505 233 RALLRRAERSGRlprPVLLLLDEFANLGRLPSLETLLATGRGYGIRLVLILQSLAQLEAIYGEEGAETILGNCGTKIFLG 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 484 SPSKEIAEFAAGEIGEKEILKASEQYSYGadpvrdGVSTGKEKERETLVSYSDIQTLPDLSCYVTLPGPYPAVKLALKYK 563
Cdd:COG3505 313 VNDPETAEYLSELLGKRTVERRSESRSRG------SRSRSRSEQERPLLTPDELRRLPDGEAIVLVRGGPPIRAKKIRYY 386
|
410
....*....|....*.
gi 835812308 564 PRPKIAEGFIQRRLDT 579
Cdd:COG3505 387 KDPEPAPAFEPRDAEA 402
|
|
| TrwB_TraG_TraD_VirD4 |
cd01127 |
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ... |
378-484 |
6.41e-29 |
|
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.
Pssm-ID: 410871 [Multi-domain] Cd Length: 144 Bit Score: 112.31 E-value: 6.41e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 378 PNGWLFISSNADTHASLKPVISMWLSIAIRGLLAM-GENRNRRVWIFADELPTLHKLPDLVEILPEARKFGGCYVFGIQS 456
Cdd:cd01127 37 GELFLVIPDRDDSFAALRALFFNQLFRALTELASLsPGRLPRRVWFILDEFANLGRIPNLPNLLATGRKRGISVVLILQS 116
|
90 100
....*....|....*....|....*...
gi 835812308 457 YAQLEDIYGVKPAATLFDVMNTRAFFRS 484
Cdd:cd01127 117 LAQLEAVYGKDGAQTILGNCNTKLYLGT 144
|
|
| SepH |
NF040712 |
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
590-662 |
8.98e-04 |
|
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.
Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 42.06 E-value: 8.98e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 835812308 590 EAREAEGSLARALFTPDAPEPG-PADTDSHAGEQPEPVSQPAPAEVTVSPAPVKAPPTTKSPAAEPSARAAEPP 662
Cdd:NF040712 232 DPAEAGTPDDLASARRRRAGVEqPEDEPVGPGAAPAAEPDEATRDAGEPPAPGAAETPEAAEPPAPAPAAPAAP 305
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13700 |
PRK13700 |
conjugal transfer protein TraD; Provisional |
1-768 |
0e+00 |
|
conjugal transfer protein TraD; Provisional
Pssm-ID: 184256 [Multi-domain] Cd Length: 732 Bit Score: 1479.44 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 1 MSFNAKDMTQGGQIANMRFRMFGQIANIIFYVLFILFWVLCGLMLMYRLSWQTFVNGCVYWWCTTLGPMRDIIRSQPVYT 80
Cdd:PRK13700 1 MSFNAKDMTQGGQIASMRIRMFSQIANIILYCLFIFFWILVGLVLWVKISWQTFVNGCIYWWCTTLEGMRDLIKSQPVYE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 81 IQYYGQSLEYTSEQILADKYTIWCGEQLWTSFVFAAVVSLVICIVTFFIASWVLGRQGKQQSEDENTGGRQLSDKPKEVA 160
Cdd:PRK13700 81 IQYYGKTFRMNAAQVLHDKYMIWCGEQLWSAFVLAAVVALVICLITFFVVSWILGRQGKQQSENEVTGGRQLTDNPKDVA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 161 RQMKRDGMASDIKIGDLPILKNSEIQNFCLHGTVGSGKSEVIRRLLNYVRARGDMAIIYDRSCEFVKSYYDPSLDKILNP 240
Cdd:PRK13700 161 RMLKKDGKDSDIRIGDLPIIRDSEIQNFCLHGTVGAGKSEVIRRLANYARQRGDMVVIYDRSGEFVKSYYDPSIDKILNP 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 241 LDSRCAAWDLWKECLTLPDFDNISNTLIPMGTKEDPFWQGSGRTIFAEGAYLMREDKDRSYEKLVDTMLSIKIDKLRAYL 320
Cdd:PRK13700 241 LDARCAAWDLWKECLTQPDFDNTANTLIPMGTKEDPFWQGSGRTIFAEAAYLMRNDPNRSYSKLVDTLLSIKIEKLRTYL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 321 QNTPAANLVEEKIEKTAISIRAVLTNYVKAIRYLQGIEKNGEPFTIRDWMRGVREDRPNGWLFISSNADTHASLKPVISM 400
Cdd:PRK13700 321 RNSPAANLVEEKIEKTAISIRAVLTNYVKAIRYLQGIEHNGEPFTIRDWMRGVREDQKNGWLFISSNADTHASLKPVISM 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 401 WLSIAIRGLLAMGENRNRRVWIFADELPTLHKLPDLVEILPEARKFGGCYVFGIQSYAQLEDIYGVKPAATLFDVMNTRA 480
Cdd:PRK13700 401 WLSIAIRGLLAMGENRNRRVWFFCDELPTLHKLPDLVEILPEARKFGGCYVFGIQSYAQLEDIYGEKAAATLFDVMNTRA 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 481 FFRSPSKEIAEFAAGEIGEKEILKASEQYSYGADPVRDGVSTGKEKERETLVSYSDIQTLPDLSCYVTLPGPYPAVKLAL 560
Cdd:PRK13700 481 FFRSPSHKIAEFAAGEIGEKEHLKASEQYSYGADPVRDGVSTGKDMERQTLVSYSDIQSLPDLTCYVTLPGPYPAVKLSL 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 561 KYKPRPKIAEGFIQRRLDTRVDARLSALLEAREAEGSLARALFTPDAPEPGPADTDSHAGeqpepvsqpaPAEVTVSPAP 640
Cdd:PRK13700 561 KYQARPKVAPEFIPRDINPEMENRLSAVLAAREAEGRQMASLFEPDVPEVASGEDVTQAE----------QPQQPQQPQQ 630
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 641 VKAPPTTKSPAAePSARAAEppvlrvttvplikpkaaaaaaaaatASSVGTPAAGGTEQELAQQSAEQGQEMLPAGMNED 720
Cdd:PRK13700 631 PQQPQQPQQPVS-PVINDKK-------------------------SDAGVNVPAGGIEQELKMKPEEEMEQQLPPGISES 684
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|
gi 835812308 721 GVIEDMQAYDAWLADEQ--TQRDMQRREEVNINrSHRHDEQdDVEIGGNF 768
Cdd:PRK13700 685 GEVVDMAAYEAWQQENHpdIQQQMQRREEVNIN-VHRERGE-DVEPGDDF 732
|
|
| TraD_Ftype |
TIGR02759 |
type IV conjugative transfer system coupling protein TraD; The TraD protein performs an ... |
8-575 |
0e+00 |
|
type IV conjugative transfer system coupling protein TraD; The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Pssm-ID: 131806 Cd Length: 566 Bit Score: 859.39 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 8 MTQGGQIANMRFRMFGQIANIIFYVLFILFWVLCGLMLMYRLSWQTFvNGCVYWWCTTLGPMRDIIRSQPVYTIqYYGQS 87
Cdd:TIGR02759 1 FTRGGQITFHNIRMFFQVTKTLFYWMFILFIILTGLILWFMASVNTF-LGNIYYWEAQLFTLVGHIKTQEVFTP-WFGKT 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 88 LEYTSEQILADKYTIWCGEQLWTSFVFAAVVSLVICIVTFFIASWVLGRQGKQQSEDENTGGRQLSDkPKEVARQMKRDG 167
Cdd:TIGR02759 79 YTTYQAQILTNPYVIRAYDQLWQALQKSALAALAISLVVFLLFMFFFIKRGEQQSKDHFIRGSQLSS-PKELIKKLKKSR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 168 MASDIKIGDLPILK-NSEIQNFCLHGTVGSGKSEVIRRLLNYVRARGDMAIIYDRSCEFVKSYYDPSLDKILNPLDSRCA 246
Cdd:TIGR02759 158 RASDIKIGGLPLIKfGSETQHILIHGTTGSGKSVAIRKLLRWIRQRGDRAIIYDKGCTFTSRFYDPSQDVILNPFDERCA 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 247 AWDLWKECLTLPDFDNISNTLIPMGTKEDPFWQGSGRTIFAEGAYLMREDKDRSYEKLVDTMLSIKIDKLRAYLQNTPAA 326
Cdd:TIGR02759 238 NWDVWRECKDKTDFENMAEALIPMHGDGDPFWVDSARTIFTSTAYKMRNDPKRSTSKLLDLLLTSELEELRDYLKGTESA 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 327 NLVEEKIEKTAISIRAVLTNYVKAIRYLQGIEKNG-EPFTIRDWmrgVREDRPNGWLFISSNADTHASLKPVISMWLSIA 405
Cdd:TIGR02759 318 SLVSDKIEKTAISIKSVLATYLKSLRFLEGLDRKGrEPFSIRDW---ILNEQKNGWLFISSNAQQHASLKPLISMWLSIA 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 406 IRGLLAMGENRNRRVWIFADELPTLHKLPDLVEILPEARKFGGCYVFGIQSYAQLEDIYGVKPAATLFDVMNTRAFFRSP 485
Cdd:TIGR02759 395 SRGLLSLPPNDDRRIWFIMDELPSLHKLPDLDETIAEVRKFGGCYVLGIQSFAQLEKIYGQNGAATLFDLLNTRFFFRSP 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 486 SKEIAEFAAGEIGEKEILKASEQYSYGADPVRDGVSTGKEKERETLVSYSDIQTLPDLSCYVTLPGPYPAVKLALKYKPR 565
Cdd:TIGR02759 475 SAKMAKIVSDDLGEQEIEESKENYSYGANSVRDGVSLGSQTITRPLVSYSDIQFLDDLQCYVRLPGNYPITKLKLKYDER 554
|
570
....*....|
gi 835812308 566 PKIAEGFIQR 575
Cdd:TIGR02759 555 PKICPPFIPR 564
|
|
| TrwB_AAD_bind |
pfam10412 |
Type IV secretion-system coupling protein DNA-binding domain; The plasmid conjugative coupling ... |
174-561 |
7.77e-131 |
|
Type IV secretion-system coupling protein DNA-binding domain; The plasmid conjugative coupling protein TrwB forms hexamers from six structurally very similar protomers. This hexamer contains a central channel running from the cytosolic pole (made up by the AADs) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB_AAD (all-alpha domain) domain appears to be the DNA-binding domain of the structure. TrwB, a basic integral inner-membrane nucleoside-triphosphate-binding protein, is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells and export.
Pssm-ID: 431268 [Multi-domain] Cd Length: 386 Bit Score: 393.97 E-value: 7.77e-131
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 174 IGDLPILKNSEIQNFCLHGTVGSGKSEVIRRLLNYVRARGDMAIIYDRSCEFVKSYYDPSLDKILNPLDSRCAAWDLWKE 253
Cdd:pfam10412 4 IAGVPLPKRSETRHTLIIGTTGSGKTQALRGLLDQARARGDRAIIFDLTGAFTERFYDPGRDILLNPLDARSPAWSPFAE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 254 CLTLPDFDNISNTLIP-MGTKEDPFWQGSGRTIFAEGAYLMREDKDRSYEKLVDTMLSIKIDKLRAYLQNTPAANLVEEK 332
Cdd:pfam10412 84 CKTPADFAAIAAALIPeDGGGSDPFWALAARTVLVDTLRALQRTGRKTNAALLRALLTADLDELHELLAGTAAAPLTAPE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 333 IEKTAISIRAVLTNYVKAIRYLQGiekNGEPFTIRDWmrgVREDRPNGWLFISSNADTHASLKPVISMWLSIAIRGLLAM 412
Cdd:pfam10412 164 AERTTASIRATLATNLRALRFLAP---DGERFSIREW---ITEEDPGGWLFITYRADQRAALRPLLSCWLDLAIRALLSL 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 413 GENRNRRVWIFADELPTLHKLPDLVEILPEARKFGGCYVFGIQSYAQLEDIYGVKPAATLFDVMNTRAFFRSPSKEIAEF 492
Cdd:pfam10412 238 PPSRDRRLWFFLDELPALGRLPSLKDLLAEGRKFGGAVVLGLQSIAQLREIYGEDGAQTILSNCGTKLILRVSDGETAEL 317
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 835812308 493 AAGEIGEKEILKASEQYSYGADPVRDGVSTGKEKERETLVSYSDIQTLPDLSCYVTLPGPYPAVKLALK 561
Cdd:pfam10412 318 CSDLLGDREVERMDESLSYGANNSRDGVTLGRQRRVRPLVLPSEIMNLPRLHGYLKFPDGFPVARVTLP 386
|
|
| VirD4 |
COG3505 |
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, ... |
187-579 |
3.35e-79 |
|
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442728 [Multi-domain] Cd Length: 402 Bit Score: 259.92 E-value: 3.35e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 187 NFCLHGTVGSGKSEVIRRLLNYVRARGDMAIIYDRSCEFVK---SYYDPSLDK--ILNPLD-SRCAAWDLWKECLTLPDF 260
Cdd:COG3505 1 HVLVIGPTGSGKTVGLVIPNLTQLARGESVVVTDPKGDLAEltaGFRRRAGYDvyVFDPFDpERSHRWNPLDEIRDPADA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 261 DNISNTLIPM---GTKEDPFWQGSGRTIFAEGAYLMREDKDRSYEKLVDtMLSIKIDKLRAYLQNTP---------AANL 328
Cdd:COG3505 81 QELAEALIPAlggGGGGDPFWREAARALLAALILALAEEGRRTLADVYR-LLSEPEEELRELLEALPesphppvadTLAA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 329 VEEKIEKTAISIRAVLTNYVKAIRyLQGIEK--NGEPFTIRDWMRGvredrpNGWLFISSNADTHASLKPVISMWLSIAI 406
Cdd:COG3505 160 FLNAAEKTRSSVLSTLASALELLS-DPEVAAltSGSDFDLRDLIRE------KGTLYLVLPPDDLSTLAPLLRLLLSQLI 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 407 RGLLAMGENRNR---RVWIFADELPTLHKLPDLVEILPEARKFGGCYVFGIQSYAQLEDIYGVKPAATLFDVMNTRAFFR 483
Cdd:COG3505 233 RALLRRAERSGRlprPVLLLLDEFANLGRLPSLETLLATGRGYGIRLVLILQSLAQLEAIYGEEGAETILGNCGTKIFLG 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 484 SPSKEIAEFAAGEIGEKEILKASEQYSYGadpvrdGVSTGKEKERETLVSYSDIQTLPDLSCYVTLPGPYPAVKLALKYK 563
Cdd:COG3505 313 VNDPETAEYLSELLGKRTVERRSESRSRG------SRSRSRSEQERPLLTPDELRRLPDGEAIVLVRGGPPIRAKKIRYY 386
|
410
....*....|....*.
gi 835812308 564 PRPKIAEGFIQRRLDT 579
Cdd:COG3505 387 KDPEPAPAFEPRDAEA 402
|
|
| TraD_N |
pfam12615 |
F sex factor protein N terminal; This domain family is found in bacteria, and is typically ... |
32-128 |
1.69e-48 |
|
F sex factor protein N terminal; This domain family is found in bacteria, and is typically between 96 and 107 amino acids in length. The family is found in association with pfam10412. TraD is a cytoplasmic membrane protein with possible DNA binding domains. It is part of the bacterial F sex factor complex.
Pssm-ID: 432671 [Multi-domain] Cd Length: 97 Bit Score: 166.07 E-value: 1.69e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 32 VLFILFWVLCGLMLMYRLSWQTFVNGCVYWWCTTLGPMRDIIRSQPVYTIQYYGQSLEYTSEQILADKYTIWCGEQLWTS 111
Cdd:pfam12615 1 VLFILFLVLTGLWLWCRLSQQTFVNGLYYWWCTTYGQMKDLIGEQHVYTIWYYGQTYGINFYQILFDKYTIWNAEQFWEF 80
|
90
....*....|....*..
gi 835812308 112 FVFAAVVSLVICIVTFF 128
Cdd:pfam12615 81 LILSALAALVICFVTFF 97
|
|
| TrwB_TraG_TraD_VirD4 |
cd01127 |
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ... |
378-484 |
6.41e-29 |
|
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.
Pssm-ID: 410871 [Multi-domain] Cd Length: 144 Bit Score: 112.31 E-value: 6.41e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 378 PNGWLFISSNADTHASLKPVISMWLSIAIRGLLAM-GENRNRRVWIFADELPTLHKLPDLVEILPEARKFGGCYVFGIQS 456
Cdd:cd01127 37 GELFLVIPDRDDSFAALRALFFNQLFRALTELASLsPGRLPRRVWFILDEFANLGRIPNLPNLLATGRKRGISVVLILQS 116
|
90 100
....*....|....*....|....*...
gi 835812308 457 YAQLEDIYGVKPAATLFDVMNTRAFFRS 484
Cdd:cd01127 117 LAQLEAVYGKDGAQTILGNCNTKLYLGT 144
|
|
| TraG-D_C |
pfam12696 |
TraM recognition site of TraD and TraG; This family includes both TraG and TraD as well as ... |
419-541 |
9.72e-19 |
|
TraM recognition site of TraD and TraG; This family includes both TraG and TraD as well as VirD4 proteins. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. This domain interacts with the relaxosome component TraM via the latter's tetramerization domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore.
Pssm-ID: 432726 [Multi-domain] Cd Length: 125 Bit Score: 82.70 E-value: 9.72e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 419 RVWIFADELPTLHKLPDLVEILPEARKFGGCYVFGIQSYAQLEDIYGVKPAATLFDVMNTRAFFRSPSKEIAEFAAGEIG 498
Cdd:pfam12696 1 PVLFVLDEFANLGKIPDLEKLISTGRSRGISLMLILQSIAQLEELYGKDGAETILGNCNTKVFLGGGDEETAKYLSKLLG 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 835812308 499 EKEILKASEQYSYGADPVRDGVS--TGKEKEREtLVSYSDIQTLP 541
Cdd:pfam12696 81 KYTVVSTTTSSSSSGSGGSGSSSssSSQLVGRP-LLTPDELRRLP 124
|
|
| T4SS-DNA_transf |
pfam02534 |
Type IV secretory system Conjugative DNA transfer; These proteins contain a P-loop and ... |
195-563 |
1.29e-07 |
|
Type IV secretory system Conjugative DNA transfer; These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. The C-terminus of this domain interacts with the relaxosome component TraM via the latter's tetramerization domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore. The family contains a number of different DNA transfer proteins.
Pssm-ID: 367119 [Multi-domain] Cd Length: 468 Bit Score: 54.72 E-value: 1.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 195 GSGKSE--VIRRLLNYvrarGDMAIIYDRSCE----------------FVKSYYDPSLDKILNPLDsrcaaW-DLWKECL 255
Cdd:pfam02534 54 GSGKGVgvVIPNLLVW----KGSIVVLDPKGElweltsgirekqgrkvFVLEPFNPKTSDRYNPLD-----YiDRGSEQE 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 256 TlPDFDNISNTLIP-MGTKEDPFWQGSGRTIF-AEGAYLMREDKDRSYE---KLVDTMLS---IKIDKLRAYLQNT---- 323
Cdd:pfam02534 125 T-EDILKVASLIMPgKGGGRDDFFNNTARQLLvALIALVLRSKPTRTIGqtlRFVRNMLSepnLIENKELAVLLNEldgs 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 324 ---PAANLVEEKIEKTAISIRAVLTNYVKAIR--YLQGIEKN--GEPFTIRDWMRGvREDrpngwLFISSNAD---THAS 393
Cdd:pfam02534 204 hhdRVGDNLRFYVNKTDETRSSVIGTAVSELAlyADPEVRNAtsGSDFDLRDLRRD-KTS-----VYVILNPKdltVVSP 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 394 LKPVISMWLSIAIRGLLAMGENRNRRVWIFADELPTLHKLPDLVEILPEARKFGGCYVFGIQSYAQLEDIYGVKPAATLF 473
Cdd:pfam02534 278 LLRVFFQMVVELLYLKLPNGDGRPKEVLFLLDEFPSLGKLEILEEALATIRGYGIRLTTICQSISQLKETYGGEGAKSIL 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 474 DVMNTRAFFRSPSK-EIAEFAAGEIGEKEIlkASEQYSYGADPVRDGVSTGKEKERETLVSYSDIQTLPDLSCYVTLPGp 552
Cdd:pfam02534 358 SNHAVVICFAASNDeETAKYISKLLGKTTV--EVESSSKSTDAKGSSRSRSISEVQRPLLTPDEVLRMPDDEQIVITKG- 434
|
410
....*....|...
gi 835812308 553 YPAVKL--ALKYK 563
Cdd:pfam02534 435 QPPIKCkkALYFK 447
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
583-670 |
2.46e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 47.88 E-value: 2.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 583 ARLSALLEAREA--EGSLARALFTPDAPEPGPADTDSHAG----EQPEPVSQPAPAEvTVSPAPVKAPPTTKSPAAEPSA 656
Cdd:PRK14950 354 AVIEALLVPVPApqPAKPTAAAPSPVRPTPAPSTRPKAAAaaniPPKEPVRETATPP-PVPPRPVAPPVPHTPESAPKLT 432
|
90
....*....|....*
gi 835812308 657 RAAEP-PVLRVTTVP 670
Cdd:PRK14950 433 RAAIPvDEKPKYTPP 447
|
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
574-662 |
3.62e-05 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 47.30 E-value: 3.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 574 QRRLDTRVDArlsalLEAREAEGSLARAlfTPDAPEPGPADTDshagEQPEPVSQPAPAEvtVSPAPVKAPPTTKSPAAE 653
Cdd:COG5373 23 VARLRRRVEE-----LEAELAEAAEAAS--APAEPEPEAAAAA----TAAAPEAAPAPVP--EAPAAPPAAAEAPAPAAA 89
|
....*....
gi 835812308 654 PSARAAEPP 662
Cdd:COG5373 90 APPAEAEPA 98
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
583-670 |
8.85e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 45.86 E-value: 8.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 583 ARLSALLEARE------------AEGSLA------------RAL-FTPD--APEPGPADTDS-HAGEQPEPVSQPAPAEV 634
Cdd:PRK14951 319 ARLAALMPADEtqllysiclhgrAELGLApdeyaaltmvllRLLaFKPAaaAEAAAPAEKKTpARPEAAAPAAAPVAQAA 398
|
90 100 110
....*....|....*....|....*....|....*.
gi 835812308 635 TVsPAPVKAPPTTKSPAAEPSARAAEPPVLRVTTVP 670
Cdd:PRK14951 399 AA-PAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAA 433
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
552-662 |
1.64e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 45.25 E-value: 1.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 552 PYPAVKLALKYKPRPKIAEGFIQRRLDTRVDARLSALLEAREAEGSLARAlftpdAPEPGPADTDSHAGEQPEPVSQPAP 631
Cdd:PRK12323 397 PAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGG-----APAPAPAPAAAPAAAARPAAAGPRP 471
|
90 100 110
....*....|....*....|....*....|.
gi 835812308 632 AevtvsPAPVKAPPTTKSPAAEPSARAAEPP 662
Cdd:PRK12323 472 V-----AAAAAAAPARAAPAAAPAPADDDPP 497
|
|
| PRK13880 |
PRK13880 |
conjugal transfer coupling protein TraG; Provisional |
364-471 |
3.86e-04 |
|
conjugal transfer coupling protein TraG; Provisional
Pssm-ID: 237540 Cd Length: 636 Bit Score: 43.96 E-value: 3.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 364 FTIRDWMRgvrEDRPNGwLFISSNADTHASLKPVISMWLSIAIRgLLA--MGENRNR-------RVWIFADELPTLHKLp 434
Cdd:PRK13880 385 FRIKDLMH---HDDPVS-LYIVTQPNDKARLRPLVRVMVNMIVR-LLAdkMDFENGRpvahykhRLLMMLDEFPSLGKL- 458
|
90 100 110
....*....|....*....|....*....|....*..
gi 835812308 435 dlvEILPEARKFGGCYvfGIQSYAQLEDIYGVKPAAT 471
Cdd:PRK13880 459 ---EILQESLAFVAGY--GIKCYLICQDINQLKSRET 490
|
|
| Rib_recp_KP_reg |
pfam05104 |
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ... |
606-671 |
3.88e-04 |
|
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear.
Pssm-ID: 461548 [Multi-domain] Cd Length: 140 Bit Score: 41.26 E-value: 3.88e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 835812308 606 DAPEPGPADTDSHAGEQPEPVSQPAPAEVTVSPAP-------------VKAPPTTKSPAAEPSARAAEPPVLRVTTVPL 671
Cdd:pfam05104 62 EPREFKTPDEAPSAALEPEPVPTPVPAPVEPEPAPpsespapspkekkKKEKKSAKVEPAETPEAVQPKPALEKEEPPA 140
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
569-710 |
8.79e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 42.67 E-value: 8.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 569 AEGFIQRRLDtRVDARLSALLEAREAEGSLARALFTPDAPEPGPADTDSHAGEQPEPVSQPAPAEvtvSPAPVKAPPTTk 648
Cdd:PRK07764 370 DERGLLARLE-RLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAP---APAPAPAPPSP- 444
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 835812308 649 SPAAEPSARAAEPPVLRVTTVPLIKPKAAAAAAAAATASSVGTPAAGGTEQELAQQSAEQGQ 710
Cdd:PRK07764 445 AGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506
|
|
| SepH |
NF040712 |
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
590-662 |
8.98e-04 |
|
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.
Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 42.06 E-value: 8.98e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 835812308 590 EAREAEGSLARALFTPDAPEPG-PADTDSHAGEQPEPVSQPAPAEVTVSPAPVKAPPTTKSPAAEPSARAAEPP 662
Cdd:NF040712 232 DPAEAGTPDDLASARRRRAGVEqPEDEPVGPGAAPAAEPDEATRDAGEPPAPGAAETPEAAEPPAPAPAAPAAP 305
|
|
| PHA03291 |
PHA03291 |
envelope glycoprotein I; Provisional |
592-668 |
1.19e-03 |
|
envelope glycoprotein I; Provisional
Pssm-ID: 223033 [Multi-domain] Cd Length: 401 Bit Score: 41.86 E-value: 1.19e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 835812308 592 REAEGSLARALfTPDAPEPGPADTDSHAGEQPePVSQPAPAEVTVSPAPVKAPPTTKSPAAEPSARAAEPPVLRVTT 668
Cdd:PHA03291 180 GSADGSCDPAL-PLSAPRLGPADVFVPATPRP-TPRTTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAE 254
|
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
575-658 |
1.23e-03 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 42.29 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 575 RRLDTRVDARLSALLEAREAEGSLArALFTPDAPEPGPADTDSHAGEQPEPVSQPAPAEVtvspapvkAPPTTKSPAAEP 654
Cdd:COG5373 31 EELEAELAEAAEAASAPAEPEPEAA-AAATAAAPEAAPAPVPEAPAAPPAAAEAPAPAAA--------APPAEAEPAAAP 101
|
....
gi 835812308 655 SARA 658
Cdd:COG5373 102 AAAS 105
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
594-720 |
1.53e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 42.14 E-value: 1.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 594 AEGSLARAlftpdAPEPGPADTDShAGEQPEPVSQPAPAEVTVSPAPVKAPPTTKSPAAEPSARAAEPPVLRVTTVPLIK 673
Cdd:PRK07003 372 VPARVAGA-----VPAPGARAAAA-VGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADG 445
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 835812308 674 PKAAAAAAAAATASSVGTPAAGGTEQELAQQSAEQGQEMLPAGMNED 720
Cdd:PRK07003 446 DAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEP 492
|
|
| PDHac_trf_long |
TIGR01348 |
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form; This model ... |
604-657 |
1.63e-03 |
|
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form; This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model. [Energy metabolism, Pyruvate dehydrogenase]
Pssm-ID: 273566 [Multi-domain] Cd Length: 546 Bit Score: 41.78 E-value: 1.63e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 835812308 604 TPDAPEPGPADTDSHAGEQPEPVSQPAPAEVTvSPAPVKAP---PTTKSPAAePSAR 657
Cdd:TIGR01348 198 TAPAPASAQPAAQSPAATQPEPAAAPAAAKAQ-APAPQQAGtqnPAKVDHAA-PAVR 252
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
607-728 |
2.08e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 41.40 E-value: 2.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 607 APEPGPADTDSHAGEQ-PEPVSQPAPAEVTVSPA---------PVKAPPTTKSPAAEPSARAAEPPVLRVTTVPLIKPKA 676
Cdd:PRK12323 486 AAAPAPADDDPPPWEElPPEFASPAPAQPDAAPAgwvaesipdPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRP 565
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 835812308 677 AAAAAAAATASSVG---TPAAG----GTEQELAQQS---AEQGQEM-----LPAgMNEDGVIEDMQA 728
Cdd:PRK12323 566 PRASASGLPDMFDGdwpALAARlpvrGLAQQLARQSelaGVEGDTVrlrvpVPA-LAEAEVVERLQA 631
|
|
| PRK11901 |
PRK11901 |
hypothetical protein; Reviewed |
604-662 |
3.43e-03 |
|
hypothetical protein; Reviewed
Pssm-ID: 237015 [Multi-domain] Cd Length: 327 Bit Score: 40.44 E-value: 3.43e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 835812308 604 TPDAPEPGPADTDSHAGEQPEPVSQPAPAEVTVSPAPVKAPPTTKSPAAEPSARAAEPP 662
Cdd:PRK11901 176 TAPATVAPSKGAKVPATAETHPTPPQKPATKKPAVNHHKTATVAVPPATSGKPKSGAAS 234
|
|
| FimV |
COG3170 |
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures]; |
547-660 |
4.34e-03 |
|
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];
Pssm-ID: 442403 [Multi-domain] Cd Length: 508 Bit Score: 40.55 E-value: 4.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 547 VTLPGPYPAVKLALKYKPRpkiAEGFIQRRLDTRVDA-RLSALLEAREAEGSLAR---ALFTPDAPEPGPAdtdshageq 622
Cdd:COG3170 47 VRLASAEAGLRFAVERRAD---GRPVLRVTSSRPVNEpFLDFLVEVNWPSGRLVReytLLLDPPAYAAAAA--------- 114
|
90 100 110
....*....|....*....|....*....|....*...
gi 835812308 623 pEPVSQPAPAevtvSPAPVKAPPTTKSPAAEPSARAAE 660
Cdd:COG3170 115 -APAAAPAPA----PAAPAAAAAAADQPAAEAAPAASG 147
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
607-662 |
4.69e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 40.31 E-value: 4.69e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 835812308 607 APEPGPADTDSHAG----EQP--EPVSQPAPAEvtvSPAPVKAPPTTKSPAAEPSARAAEPP 662
Cdd:PRK14954 394 APEPDLPQPDRHPGpakpEAPgaRPAELPSPAS---APTPEQQPPVARSAPLPPSPQASAPR 452
|
|
| DamX |
COG3266 |
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ... |
567-707 |
5.15e-03 |
|
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442497 [Multi-domain] Cd Length: 455 Bit Score: 40.22 E-value: 5.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 567 KIAEGFIQRRLDTRVDARLSALLEAreaegsLARALFTPDAPEPGPADTDSHAGEQPEPVSQPAPAEVTVSPAPVKAPPT 646
Cdd:COG3266 226 LAALALLAAGAAEVLTARLVLLLLI------IGSALKAPSQASSASAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAV 299
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 835812308 647 TKsPAAEPSARAAEPPVLRVT-TVPLIKPKAAAAAAAAA----TASSVGTPAA-------GGTEQELAQQSAE 707
Cdd:COG3266 300 AL-PAAPAAAAAAAAPAEAAApQPTAAKPVVTETAAPAApapeAAAAAAAPAApavakklAADEQWLASQPAS 371
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
541-716 |
5.79e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 40.31 E-value: 5.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 541 PDLSCYVTLPGPYPAVKLALKYKPRPKIAEGFIQRRLDTRVDAR---LSALLE------AREAEGSLArALFTPDAPEPG 611
Cdd:PHA03247 2629 PSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRaaqASSPPQrprrraARPTVGSLT-SLADPPPPPPT 2707
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 612 PAD--------------TDSHAGEQPEPVSQPAPAEVTVSPAPVKAPPTTKSPAAEPSARAAEPPVLRVTTVPLIKPKAA 677
Cdd:PHA03247 2708 PEPaphalvsatplppgPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPA 2787
|
170 180 190
....*....|....*....|....*....|....*....
gi 835812308 678 AAAAAAATASSVGTPAAGGTEQELAQQSAEQGQEMLPAG 716
Cdd:PHA03247 2788 VASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAG 2826
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
552-662 |
5.83e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 40.22 E-value: 5.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 552 PYPAVKLALKYKPRPKIAEGFIQRRLDTRVdARLSALLEAREAEGSLARALFTPdAPEPGPADTDSHAGEQ-PEPVSQPA 630
Cdd:PRK07003 398 AVTAVTGAAGAALAPKAAAAAAATRAEAPP-AAPAPPATADRGDDAADGDAPVP-AKANARASADSRCDERdAQPPADSG 475
|
90 100 110
....*....|....*....|....*....|..
gi 835812308 631 PAEVTVSPAPVKAPPTTKSPAAEPSARAAEPP 662
Cdd:PRK07003 476 SASAPASDAPPDAAFEPAPRAAAPSAATPAAV 507
|
|
| PHA03269 |
PHA03269 |
envelope glycoprotein C; Provisional |
564-694 |
6.38e-03 |
|
envelope glycoprotein C; Provisional
Pssm-ID: 165527 [Multi-domain] Cd Length: 566 Bit Score: 39.71 E-value: 6.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 564 PRPKIAEGFIQRRLDTRVDARLSAlleAREAEGSLARALFTPDAPEPGPADTdSHAGEQPEPVSQPAPAEvTVSPAPVKA 643
Cdd:PHA03269 27 PIPELHTSAATQKPDPAPAPHQAA---SRAPDPAVAPTSAASRKPDLAQAPT-PAASEKFDPAPAPHQAA-SRAPDPAVA 101
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 835812308 644 PPTTKSPAAEPsaraAEPPvlrvTTVPLIKPkaAAAAAAAATASSVGTPAA 694
Cdd:PHA03269 102 PQLAAAPKPDA----AEAF----TSAAQAHE--APADAGTSAASKKPDPAA 142
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
591-706 |
6.87e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 39.70 E-value: 6.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 591 AREAEGSLARALFTPDAPEPGPA-DTDSHAGEQPEPV-----SQPAPAEVTVSPAPVKAPPTTKSPAAEPSARAA----- 659
Cdd:PRK14951 370 AEAAAPAEKKTPARPEAAAPAAApVAQAAAAPAPAAApaaaaSAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAvalap 449
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 660 --------EPPVLRVTTVPLIKPKAAAAAAAAATASSVGTPAA-----GGTEQELAQQSA 706
Cdd:PRK14951 450 appaqaapETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEegdvwHATVQQLAAAEA 509
|
|
| DUF3729 |
pfam12526 |
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins ... |
605-674 |
7.41e-03 |
|
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important.
Pssm-ID: 372164 [Multi-domain] Cd Length: 115 Bit Score: 36.98 E-value: 7.41e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 835812308 605 PDAPEPGPADTDSHAGEQPEPVSQPAPAEVTV-SPAPVKAPPTTKSPAAEPSARAAEPPVLRVTTVPLIKP 674
Cdd:pfam12526 29 FSPPESAHPDPPPPVGDPRPPVVDTPPPVSAVwVLPPPSEPAAPEPDLVPPVTGPAGPPSPLAPPAPAQKP 99
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
581-671 |
8.41e-03 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 39.87 E-value: 8.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 835812308 581 VDARLSALLEAREAEGSLARALFTPDAPEPGPADTDSHAGEQPEPVSQPAPA----EVTVSPAPVKAPPTTKSPAAEP-S 655
Cdd:PRK12270 25 VDPSWREFFADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAaaapAAPPKPAAAAAAAAAPAAPPAAaA 104
|
90
....*....|....*.
gi 835812308 656 ARAAEPPVLRVTTVPL 671
Cdd:PRK12270 105 AAAPAAAAVEDEVTPL 120
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
605-667 |
9.37e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 39.54 E-value: 9.37e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 835812308 605 PDAPEPGPADTDSHAGEqPEPVSQPAPAEVTVSPAPVKA-----------PPTTKSPAAEPSARAAEPPVLRVT 667
Cdd:PHA03247 2624 PDPPPPSPSPAANEPDP-HPPPTVPPPERPRDDPAPGRVsrprrarrlgrAAQASSPPQRPRRRAARPTVGSLT 2696
|
|
| |
