CdaR family transcriptional regulator may contain an N-terminal sugar diacid recognition domain and an HTH DNA-binding motif at the C-terminus; similar to Bacillus subtilis protein YsfB
Putative sugar diacid recognition; This region is found in several proteins characterized as ...
3-131
7.59e-51
Putative sugar diacid recognition; This region is found in several proteins characterized as carbohydrate diacid regulators. An HTH DNA-binding motif is found at the C-terminus of these proteins suggesting that this region includes the sugar recognition region.
:
Pssm-ID: 461704 [Multi-domain] Cd Length: 129 Bit Score: 166.50 E-value: 7.59e-51
Putative sugar diacid recognition; This region is found in several proteins characterized as ...
3-131
7.59e-51
Putative sugar diacid recognition; This region is found in several proteins characterized as carbohydrate diacid regulators. An HTH DNA-binding motif is found at the C-terminus of these proteins suggesting that this region includes the sugar recognition region.
Pssm-ID: 461704 [Multi-domain] Cd Length: 129 Bit Score: 166.50 E-value: 7.59e-51
PucR C-terminal helix-turn-helix domain; This helix-turn-helix domain is often found at the ...
314-368
1.18e-07
PucR C-terminal helix-turn-helix domain; This helix-turn-helix domain is often found at the C-terminus of PucR-like transcriptional regulators such as Swiss:O32138 and is likely to be DNA-binding.
Pssm-ID: 433305 [Multi-domain] Cd Length: 56 Bit Score: 47.83 E-value: 1.18e-07
Putative sugar diacid recognition; This region is found in several proteins characterized as ...
3-131
7.59e-51
Putative sugar diacid recognition; This region is found in several proteins characterized as carbohydrate diacid regulators. An HTH DNA-binding motif is found at the C-terminus of these proteins suggesting that this region includes the sugar recognition region.
Pssm-ID: 461704 [Multi-domain] Cd Length: 129 Bit Score: 166.50 E-value: 7.59e-51
PucR C-terminal helix-turn-helix domain; This helix-turn-helix domain is often found at the ...
314-368
1.18e-07
PucR C-terminal helix-turn-helix domain; This helix-turn-helix domain is often found at the C-terminus of PucR-like transcriptional regulators such as Swiss:O32138 and is likely to be DNA-binding.
Pssm-ID: 433305 [Multi-domain] Cd Length: 56 Bit Score: 47.83 E-value: 1.18e-07
GAF domain; The GAF domain is named after some of the proteins it is found in, including ...
3-117
3.72e-05
GAF domain; The GAF domain is named after some of the proteins it is found in, including cGMP-specific phosphodiesterases, adenylyl cyclases and FhlA. It is also found in guanylyl cyclases and phytochromes. The structure of a GAF domain shows that the domain shares a similar fold with the PAS domain. This domain can bind O2, CO and NO (Matilla et.al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 433019 [Multi-domain] Cd Length: 137 Bit Score: 43.22 E-value: 3.72e-05
Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
References:
Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
of the residues that compose this conserved feature have been mapped to the query sequence.
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Functional characterization of the conserved domain architecture found on the query.
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This image shows a graphical summary of conserved domains identified on the query sequence.
The Show Concise/Full Display button at the top of the page can be used to select the desired level of detail: only top scoring hits
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Domains are color coded according to superfamilies
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if a domain or superfamily has been annotated with functional sites (conserved features),
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click on the bars or triangles to view your query sequence embedded in a multiple sequence alignment of the proteins used to develop the corresponding domain model.
The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores.
Click on the domain model's accession number to view the multiple sequence alignment of the proteins used to develop the corresponding domain model.
To view your query sequence embedded in that multiple sequence alignment, click on the colored bars in the Graphical Summary portion of the search results page,
or click on the triangles, if present, that represent functional sites (conserved features)
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Concise Display shows only the best scoring domain model, in each hit category listed below except non-specific hits, for each region on the query sequence.
(labeled illustration) Standard Display shows only the best scoring domain model from each source, in each hit category listed below for each region on the query sequence.
(labeled illustration) Full Display shows all domain models, in each hit category below, that meet or exceed the RPS-BLAST threshold for statistical significance.
(labeled illustration) Four types of hits can be shown, as available,
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specific hits meet or exceed a domain-specific e-value threshold
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and represent a very high confidence that the query sequence belongs to the same protein family as the sequences use to create the domain model
non-specific hits
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the domain superfamily to which the specific and non-specific hits belong
multi-domain models that were computationally detected and are likely to contain multiple single domains
Retrieve proteins that contain one or more of the domains present in the query sequence, using the Conserved Domain Architecture Retrieval Tool
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