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Conserved domains on  [gi|850367449|ref|WP_048026918|]
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MULTISPECIES: ABC transporter permease [Enterobacter]

Protein Classification

ABC transporter permease( domain architecture ID 11427312)

ABC transporter permease similar to ABC oligopeptide transporter permease proteins (OppB, AppB, and AmiC), the transmembrane subunits (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporters which generally bind type 2 PBPs

Gene Ontology:  GO:0055085
PubMed:  18535149|17723295
TCDB:  3.A.1

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
25-337 1.36e-105

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


:

Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 311.62  E-value: 1.36e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449  25 VTFALSAFSPVDRVLQIVGDHASQSTYDQVRHQLGLDRPLPVQFWHYLQNLAHGDLGTASATGQPVLQDLLHAFPATLEL 104
Cdd:COG0601   22 LVFLLLRLLPGDPAAALLGPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTSFVYGRPVSDLIAERLPVTLEL 101
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 105 ATLALIIGTVLGVIAGVLCARYAGSPLDLAIRTLTLLGNSVPIFWLGLLMLALFYARLQWSAGPGRLDDIwqftveprtg 184
Cdd:COG0601  102 ALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKLGWLPVSGRVSPW---------- 171
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 185 falidtwlsgdrEAFRNALSHLVLPVLLLAYYSLASITRLTRSACLGEMNKEYILLARAKGAGEMTILLRHVLPNIRSTL 264
Cdd:COG0601  172 ------------EDFLDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPV 239
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 850367449 265 LTVIALAYTSMLEGAVLTETVFSWPGIGRYLTTALFAGDTTAVMGGTLLIGVCFVLINNLTDLLVRATDPRVR 337
Cdd:COG0601  240 VTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIR 312
 
Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
25-337 1.36e-105

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 311.62  E-value: 1.36e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449  25 VTFALSAFSPVDRVLQIVGDHASQSTYDQVRHQLGLDRPLPVQFWHYLQNLAHGDLGTASATGQPVLQDLLHAFPATLEL 104
Cdd:COG0601   22 LVFLLLRLLPGDPAAALLGPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTSFVYGRPVSDLIAERLPVTLEL 101
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 105 ATLALIIGTVLGVIAGVLCARYAGSPLDLAIRTLTLLGNSVPIFWLGLLMLALFYARLQWSAGPGRLDDIwqftveprtg 184
Cdd:COG0601  102 ALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKLGWLPVSGRVSPW---------- 171
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 185 falidtwlsgdrEAFRNALSHLVLPVLLLAYYSLASITRLTRSACLGEMNKEYILLARAKGAGEMTILLRHVLPNIRSTL 264
Cdd:COG0601  172 ------------EDFLDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPV 239
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 850367449 265 LTVIALAYTSMLEGAVLTETVFSWPGIGRYLTTALFAGDTTAVMGGTLLIGVCFVLINNLTDLLVRATDPRVR 337
Cdd:COG0601  240 VTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIR 312
PRK10914 PRK10914
dipeptide ABC transporter permease DppB;
25-337 2.70e-66

dipeptide ABC transporter permease DppB;


Pssm-ID: 182834 [Multi-domain]  Cd Length: 339  Bit Score: 211.98  E-value: 2.70e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449  25 VTFALSAFSPVDRVLQIVGDHA-SQSTYDQVRHQLGLDRPLPVQFWHYLQNLAHGDLGTASATGQPVLQDLLHAFPATLE 103
Cdd:PRK10914  22 LTFAFVHMIPGDPVMIMAGERGiSPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGISLKSRIPVWDEFVPRFKATLE 101
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 104 LATLALIIGTVLGVIAGVLCARYAGSPLDLAIRTLTLLGNSVPIFWLGLLMLALFYARLQWSAGPGRLDD-IWQFTVEPR 182
Cdd:PRK10914 102 LGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGRVSDmVFLDDSNPL 181
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 183 TGFALIDTWLSGDREAFRNALSHLVLPVLLLAYYSLASITRLTRSACLGEMNKEYILLARAKGAGEMTILLRHVLPNIRS 262
Cdd:PRK10914 182 TGFMLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIIVHALRNAML 261
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 850367449 263 TLLTVIALAYTSMLEGAVLTETVFSWPGIGRYLTTALFAGDTTAVMGGTLLIGVCFVLINNLTDLLVRATDPRVR 337
Cdd:PRK10914 262 PVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIR 336
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
116-337 4.90e-26

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 102.38  E-value: 4.90e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449  116 GVIAGVLCARYAGSPLDLAIRTLTLLGNSVPIFWLGLLMLALFyarlqwsagpgrlddiwqftveprtgfalidtwlsgd 195
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA------------------------------------- 43
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449  196 reaFRNALSHLVLPVLLLAYYSLASITRLTRSACLGEMNKEYILLARAKGAGEMTILLRHVLPNIRSTLLTVIALAYTSM 275
Cdd:pfam00528  44 ---ILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGA 120
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 850367449  276 LEGAVLTETVFSWPGIGRYLTTALFAGDTTAVMGGTLLIGVCFVLINNLTDLLVRATDPRVR 337
Cdd:pfam00528 121 LGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRVR 182
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
98-314 1.20e-17

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 79.63  E-value: 1.20e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449  98 FPATLELATLALIIGTVLGVIAGVLCARYAGsPLDLAIRTLTLLGNSVPIFWLGLLMLALFYARLQWSAGPgrlddiwqf 177
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRG-KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILP--------- 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 178 tveprtgfalidtwlsgdreafrnalsHLVLPVLLLAYYSLASITRLTRSACLGEMNKEYILLARAKGAGEMTILLRHVL 257
Cdd:cd06261   71 ---------------------------GLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIIL 123
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 850367449 258 PNIRSTLLTVIALAYTSMLEGAVLTETVFS----WPGIGRYLTTALFAGDTTAVMGGTLLI 314
Cdd:cd06261  124 PLALPPILTGLVLAFARALGEFALVSFLGGgeapGPGTGLLLIFAILFPGDLGVAAAVALI 184
 
Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
25-337 1.36e-105

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 311.62  E-value: 1.36e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449  25 VTFALSAFSPVDRVLQIVGDHASQSTYDQVRHQLGLDRPLPVQFWHYLQNLAHGDLGTASATGQPVLQDLLHAFPATLEL 104
Cdd:COG0601   22 LVFLLLRLLPGDPAAALLGPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTSFVYGRPVSDLIAERLPVTLEL 101
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 105 ATLALIIGTVLGVIAGVLCARYAGSPLDLAIRTLTLLGNSVPIFWLGLLMLALFYARLQWSAGPGRLDDIwqftveprtg 184
Cdd:COG0601  102 ALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKLGWLPVSGRVSPW---------- 171
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 185 falidtwlsgdrEAFRNALSHLVLPVLLLAYYSLASITRLTRSACLGEMNKEYILLARAKGAGEMTILLRHVLPNIRSTL 264
Cdd:COG0601  172 ------------EDFLDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPV 239
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 850367449 265 LTVIALAYTSMLEGAVLTETVFSWPGIGRYLTTALFAGDTTAVMGGTLLIGVCFVLINNLTDLLVRATDPRVR 337
Cdd:COG0601  240 VTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIR 312
SapB COG4168
ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];
67-337 1.95e-80

ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];


Pssm-ID: 443329 [Multi-domain]  Cd Length: 321  Bit Score: 247.83  E-value: 1.95e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449  67 QFWHYLQNLAHGDLGTASATGQPVLQDLLHAFPATLELATLALIIGTVLGVIAGVLCARYAGSPLDLAIRTLTLLGNSVP 146
Cdd:COG4168   43 GYLFYLQNLLQGDFGISSINGEPILEQLLTVFPATLELCFLAFLLALLIGIPLGILAGIYRGKWLDKLISSLSLLGFSIP 122
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 147 IFWLGLLMLALFYARLQWSAGPGRLDDIWQftVEPRTGFALIDTWLSGD---REAFRNALSHLVLPVLLLAYYSLASITR 223
Cdd:COG4168  123 VFWLALLLILFFSLNLGWLPVSGRYNLLYE--IPPVTGFALIDAWLSDSpyrLKAIQSALQHLILPTLVLAVAPTTEVIR 200
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 224 LTRSACLGEMNKEYILLARAKGAGEMTILLRHVLPNIRSTLLTVIALAYTSMLEGAVLTETVFSWPGIGRYLTTALFAGD 303
Cdd:COG4168  201 LTRQSTEEVMNQNYIKAAATRGLSRFTIIRRHVLRNALPPIIPQLGLQFSTMLTLAMITEVVFSWPGIGRWLINAIRQQD 280
                        250       260       270
                 ....*....|....*....|....*....|....
gi 850367449 304 TTAVMGGTLLIGVCFVLINNLTDLLVRATDPRVR 337
Cdd:COG4168  281 YAAISAGVIVIGTFVIIVNILSDILGALLNPLKR 314
PRK10914 PRK10914
dipeptide ABC transporter permease DppB;
25-337 2.70e-66

dipeptide ABC transporter permease DppB;


Pssm-ID: 182834 [Multi-domain]  Cd Length: 339  Bit Score: 211.98  E-value: 2.70e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449  25 VTFALSAFSPVDRVLQIVGDHA-SQSTYDQVRHQLGLDRPLPVQFWHYLQNLAHGDLGTASATGQPVLQDLLHAFPATLE 103
Cdd:PRK10914  22 LTFAFVHMIPGDPVMIMAGERGiSPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGISLKSRIPVWDEFVPRFKATLE 101
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 104 LATLALIIGTVLGVIAGVLCARYAGSPLDLAIRTLTLLGNSVPIFWLGLLMLALFYARLQWSAGPGRLDD-IWQFTVEPR 182
Cdd:PRK10914 102 LGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGRVSDmVFLDDSNPL 181
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 183 TGFALIDTWLSGDREAFRNALSHLVLPVLLLAYYSLASITRLTRSACLGEMNKEYILLARAKGAGEMTILLRHVLPNIRS 262
Cdd:PRK10914 182 TGFMLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIIVHALRNAML 261
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 850367449 263 TLLTVIALAYTSMLEGAVLTETVFSWPGIGRYLTTALFAGDTTAVMGGTLLIGVCFVLINNLTDLLVRATDPRVR 337
Cdd:PRK10914 262 PVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIR 336
PRK15110 PRK15110
peptide ABC transporter permease SapB;
25-334 2.03e-54

peptide ABC transporter permease SapB;


Pssm-ID: 185065 [Multi-domain]  Cd Length: 321  Bit Score: 180.66  E-value: 2.03e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449  25 VTFALSAFSPvdrvlqivgdHASQStydqvrhqlglDRPLPVQFWHYLQNLAHGDLGTASATGQPVLQDLLHAFPATLEL 104
Cdd:PRK15110  22 VGFSLSYFTP----------HAPLQ-----------GASLWDAWVFWFNGLLHWDFGVSSINGQPISEQLKEVFPATMEL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 105 A----TLALIIGTVLGVIAGVLCARYAgsplDLAIRTLTLLGNSVPIFWLGLLMLALFYARLQWSAGPGRLDDIWQftVE 180
Cdd:PRK15110  81 CilafGFALLVGIPVGIIAGVTRHKWQ----DNLISALALLGFSIPVFWLALLLTLFFSLTLGWLPVSGRFDLLYE--VK 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 181 PRTGFALIDTWLSGD---REAFRNALSHLVLPVLLLAYYSLASITRLTRSACLGEMNKEYILLARAKGAGEMTILLRHVL 257
Cdd:PRK15110 155 PVTGFALIDAWLSDSpwrDEMIMSAIRHMILPVITLAVAPTTEVIRLMRISTIEVYDQNYVKAAATRGLSRFTILRRHVL 234
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 850367449 258 PNIRSTLLTVIALAYTSMLEGAVLTETVFSWPGIGRYLTTALFAGDTTAVMGGTLLIGVCFVLINNLTDLLVRATDP 334
Cdd:PRK15110 235 HNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAIRQQDYAAISAGVMVVGSLVIIVNVLSDILGAMANP 311
PRK10352 PRK10352
nickel transporter permease NikB; Provisional
54-337 4.13e-53

nickel transporter permease NikB; Provisional


Pssm-ID: 182400 [Multi-domain]  Cd Length: 314  Bit Score: 177.20  E-value: 4.13e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449  54 VRHQLGLDRPLPVQFWHYLQNLAHGDLGTASATGQPVLQDLLHAFPATLELATLALIIGTVLGVIAGVLCARYAGSPLDL 133
Cdd:PRK10352  54 TRTMLGLDQPLYVQYGTWLWKALHLDFGISFATQRPVLDDLLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDF 133
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 134 AIRTLTLLGNSVPIFWLGLLMLALFYARLQWSAGPGrlddiwqftveprtgfalidtwlsgdreafRNALSHLVLPVLLL 213
Cdd:PRK10352 134 AVRFIAFLGVSMPNFWLAFLLVMAFSVYLQWLPAMG------------------------------YGGWQHIILPAVSI 183
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 214 AYYSLASITRLTRSACLGEMNKEYILLARAKGAGEMTILLRHVLPNIRSTLLTVIALAYTSMLEGAVLTETVFSWPGIGR 293
Cdd:PRK10352 184 AFMSLAINARLLRASMLEVAGQRHVTWARLRGLSERQVERRHILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGR 263
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 850367449 294 YLTTALFAGDTTAVMGGTLLIGVCFVLINNLTDLLVRATDPRVR 337
Cdd:PRK10352 264 YAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDPRIR 307
PRK15081 PRK15081
glutathione ABC transporter permease GsiC; Provisional
34-337 4.82e-44

glutathione ABC transporter permease GsiC; Provisional


Pssm-ID: 185039 [Multi-domain]  Cd Length: 306  Bit Score: 153.33  E-value: 4.82e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449  34 PVDRVLQIVGDHASQSTYDQVRHQLGLDRPLPVQFWHYLQNLAHGDLGTASATGQPVLQDLLHAFPATLELATLALIIGT 113
Cdd:PRK15081  31 PGDPARLAAGPEADAQVVALVRQQLGLDQPLPHQFWHYISNALQGDFGTSMVSRRPVSEEIASRFMPTLWLTITSMVWAV 110
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 114 VLGVIAGVLCARYAGSPLDLAIRTLTLLGNSVPIFWLGLLMLALFYARLQWSAGPGrlDDIWQftveprtgfalidtwls 193
Cdd:PRK15081 111 IFGMAIGIASAVWRNRWPDRLGMTLAVSGISFPAFALGMLLMQVFSVELGWLPTVG--ADSWQ----------------- 171
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 194 gdreafrnalsHLVLPVLLLAYYSLASITRLTRSACLGEMNKEYILLARAKGAGEMTILLRHVLPNIRSTLLTVIALAYT 273
Cdd:PRK15081 172 -----------HYILPSLTLGAAVAAVMARFTRASFVEVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFG 240
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 850367449 274 SMLEGAVLTETVFSWPGIGRYLTTALFAGDTTAVMGGTLLIGVCFVLINNLTDLLVRATDPRVR 337
Cdd:PRK15081 241 FLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIR 304
oppB PRK09471
oligopeptide ABC transporter permease OppB;
59-337 9.71e-36

oligopeptide ABC transporter permease OppB;


Pssm-ID: 181886 [Multi-domain]  Cd Length: 306  Bit Score: 131.34  E-value: 9.71e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449  59 GLDRPLPVQFWHYLQNLAHGDLGTASATGQPVLQDLL-HAFPATLELATLALIIGTVLGVIAGVLCARYAGSPLDLAIRT 137
Cdd:PRK09471  54 HLNDPIMTQYFSYLKQLAHGDFGPSFKYKDYSVNDLVaSSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMG 133
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 138 LTLLGNSVPIFWLGLLMLALFYARLQWSAGPGrlddiwqftveprtgfalidtWLSGdreafrnALSHLVLPVLLLAYYS 217
Cdd:PRK09471 134 FAMTGVVIPSFVVAPLLVLIFAITLHWLPGGG---------------------WNGG-------ALKFMILPMVALSLAY 185
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 218 LASITRLTRSACLGEMNKEYILLARAKGAGEMTILLRHVLpniRSTLLTVIAL---AYTSMLEGAVLTETVFSWPGIGRY 294
Cdd:PRK09471 186 IASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHAL---KPALLPVLSYmgpAFVGIITGSMVIETIFGLPGIGQL 262
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 850367449 295 LTTALFAGDTTAVMGGTLLIGVCFVLINNLTDLLVRATDPRVR 337
Cdd:PRK09471 263 FVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIR 305
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
116-337 4.90e-26

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 102.38  E-value: 4.90e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449  116 GVIAGVLCARYAGSPLDLAIRTLTLLGNSVPIFWLGLLMLALFyarlqwsagpgrlddiwqftveprtgfalidtwlsgd 195
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA------------------------------------- 43
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449  196 reaFRNALSHLVLPVLLLAYYSLASITRLTRSACLGEMNKEYILLARAKGAGEMTILLRHVLPNIRSTLLTVIALAYTSM 275
Cdd:pfam00528  44 ---ILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGA 120
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 850367449  276 LEGAVLTETVFSWPGIGRYLTTALFAGDTTAVMGGTLLIGVCFVLINNLTDLLVRATDPRVR 337
Cdd:pfam00528 121 LGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRVR 182
PRK15133 PRK15133
microcin C ABC transporter permease YejB; Provisional
53-336 5.75e-24

microcin C ABC transporter permease YejB; Provisional


Pssm-ID: 185087 [Multi-domain]  Cd Length: 364  Bit Score: 100.59  E-value: 5.75e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449  53 QVRHQLGLDRPLPVQFWHYLQNLAHGDLGTASATGQPVLQDLLHAFPATLELATLALIIGTVLGVIAGVLCARYAGSPLD 132
Cdd:PRK15133  88 EITHRYGFDKPLHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAVRNGSRFD 167
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 133 LAIRTLTLLGNSVPIFWLGLLMLALFyarlqwsAGPGRLDdiwqftVEPRTGF--ALIDT--WLSgdreAFRNALSHLVL 208
Cdd:PRK15133 168 VWSSAFIIIGYAIPAFLFAILLIVFF-------AGGSYFD------LFPLRGLvsANFDSlpWYQ----KITDYLWHITL 230
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 209 PVLLLAYYSLASITRLTRSACLGEMNKEYILLARAKGAGEMTILLRHVLpniRSTLLTVIA---LAYTSM-LEGAVLTET 284
Cdd:PRK15133 231 PVLATVIGGFAALTMLTKNSFLDEIRKQYVVTARAKGVSEKNILWKHVF---RNAMLLVIAgfpATFISMfFTGSLLIEV 307
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 850367449 285 VFSWPGIGRYLTTALFAGDtTAVMGGTL----LIGvcfVLINNLTDLLVRATDPRV 336
Cdd:PRK15133 308 MFSLNGLGLLGYEATVSRD-YPVMFGTLyiftLIG---LLLNIVSDISYTLVDPRI 359
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
98-314 1.20e-17

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 79.63  E-value: 1.20e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449  98 FPATLELATLALIIGTVLGVIAGVLCARYAGsPLDLAIRTLTLLGNSVPIFWLGLLMLALFYARLQWSAGPgrlddiwqf 177
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRG-KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILP--------- 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 178 tveprtgfalidtwlsgdreafrnalsHLVLPVLLLAYYSLASITRLTRSACLGEMNKEYILLARAKGAGEMTILLRHVL 257
Cdd:cd06261   71 ---------------------------GLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIIL 123
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 850367449 258 PNIRSTLLTVIALAYTSMLEGAVLTETVFS----WPGIGRYLTTALFAGDTTAVMGGTLLI 314
Cdd:cd06261  124 PLALPPILTGLVLAFARALGEFALVSFLGGgeapGPGTGLLLIFAILFPGDLGVAAAVALI 184
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
80-292 6.52e-14

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 70.91  E-value: 6.52e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449  80 LGTaSATGQPVLQDLLHAFPATLELATLALIIGTVLGVIAGVLCArYAGSPLDLAIRTLTLLGNSVPIFWLGLLMLALFy 159
Cdd:COG1173   61 LGT-DQLGRDVLSRLLYGARISLLVGLLAVLIALVIGVLLGLLAG-YFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVL- 137
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 160 arlqwsaGPGrlddiwqftveprtgfalidtwlsgdreafrnalshLVLPVLLLAYYSLASITRLTRSACLGEMNKEYIL 239
Cdd:COG1173  138 -------GPG------------------------------------LLNVILALGLTGWPGYARLVRAQVLSLREREYVE 174
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 850367449 240 LARAKGAGEMTILLRHVLPNIRSTLLTVIALaytsMLEGAVLTETVFSWPGIG 292
Cdd:COG1173  175 AARALGASPLRIIFRHILPNVLPPLIVQATL----GIASAILAEAGLSFLGLG 223
BPD_transp_1_N pfam19300
Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal ...
25-105 2.65e-12

Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal transmembrane domain of the Binding-protein-dependent transport system inner membrane component.


Pssm-ID: 437132 [Multi-domain]  Cd Length: 114  Bit Score: 62.62  E-value: 2.65e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449   25 VTFALSAFSPVDRVLQIVGDHASQSTYDQVRHQLGLDRPLPVQFWHYLQNLAHGD------------LGTASATGQPVLQ 92
Cdd:pfam19300  22 VTFFLFYAIPRDPARLACGKNCTPETLALIRHNLGLDKPIPVQYWHFLSGIFAGRdfgavghcpapcLGYSFANNEPVWD 101
                          90
                  ....*....|...
gi 850367449   93 DLLHAFPATLELA 105
Cdd:pfam19300 102 TIMDRFPTTLSLA 114
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
93-330 7.85e-07

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 49.38  E-value: 7.85e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449  93 DLLHAFPATLELATLALIIGTVLGVIAGVLCARYAgsPLDLAIRTLTLLGNSVPIF-WLGLLMLalfyarlqwsagpgrl 171
Cdd:COG0600   58 ELWEHLLASLLRVLLGFALAALLGVPLGLLLGLSR--LLRRLLDPLLVFLRPIPPLaLAPLLIL---------------- 119
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 172 ddiwqftveprtgfalidtWLSGDREAfrnalshlvlPVLLLAYYSLASITRLTRSAcLGEMNKEYILLARAKGAGEMTI 251
Cdd:COG0600  120 -------------------WFGIGEAS----------KIFVIFLGAFFPILLNTAAG-VRSVDPELLELARSLGASRWQI 169
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 850367449 252 LLRHVLPNIRSTLLTVIALAYTSMLEGAVLTETVFSWPGIGRYLTTALFAGDTTAVMGGTLLIGVCFVLINNLTDLLVR 330
Cdd:COG0600  170 LRKVVLPAALPYIFTGLRIALGLAWIGLVVAELLGASSGLGYLILDARQLLDTDLVFAAILVIGLLGLLLDLLLRLLER 248
PRK10913 PRK10913
dipeptide ABC transporter permease DppC;
87-274 6.77e-06

dipeptide ABC transporter permease DppC;


Pssm-ID: 182833 [Multi-domain]  Cd Length: 300  Bit Score: 47.08  E-value: 6.77e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449  87 GQPVLQDLLHAFPATLELATLALIIGTVLGVIAGVLcARYAGSPLDLAIRTLTLLGNSVPIFWLGLLMLALFyarlqwsa 166
Cdd:PRK10913  87 GRDVLSRLMYGARLSLLVGCLVVVLSLVMGVILGLI-AGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIF-------- 157
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 167 GPGrlddiwqftveprtgfalidtwlsgdreafrnalshLVLPVLLLAYYSLASITRLTRSACLGEMNKEYILLARAKGA 246
Cdd:PRK10913 158 GPS------------------------------------IVNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGA 201
                        170       180
                 ....*....|....*....|....*...
gi 850367449 247 GEMTILLRHVLPNIRSTLLTVIALAYTS 274
Cdd:PRK10913 202 GAMRQMFINILPNCLAPLIVQASLGFSN 229
YejE COG4239
ABC-type microcin C transport system, permease component YejE [Secondary metabolites ...
210-266 2.52e-04

ABC-type microcin C transport system, permease component YejE [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443381 [Multi-domain]  Cd Length: 342  Bit Score: 42.45  E-value: 2.52e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 850367449 210 VLLLAYYSLASITRLTRSACLGEMNKEYILLARAKGAGEMTILLRHVLPNIRSTLLT 266
Cdd:COG4239  207 LGILLLFGWMGLVGVVRAEFLRARNLEYVRAARALGVSDRRIMFRHILPNAMVATLT 263
SapC COG4171
ABC-type antimicrobial peptide export system, permease component SapC [Defense mechanisms];
221-282 5.74e-04

ABC-type antimicrobial peptide export system, permease component SapC [Defense mechanisms];


Pssm-ID: 443331 [Multi-domain]  Cd Length: 296  Bit Score: 40.95  E-value: 5.74e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 850367449 221 ITRLTRSACLGEMNKEYILLARAKGAGEMTILLRHVLPNIRSTLLTVIALAYT-SMLEGAVLT 282
Cdd:COG4171  173 FIHAIYQAVHQELKKEYVLAARLDGASNWQLLRYSILPNILEVLVTELTRALSiAILDISALG 235
nikC PRK10417
nickel transporter permease NikC; Provisional
210-276 1.61e-03

nickel transporter permease NikC; Provisional


Pssm-ID: 236687 [Multi-domain]  Cd Length: 272  Bit Score: 39.65  E-value: 1.61e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 850367449 210 VLLLAYYSLASITRLTRSACLGEMNKEYILLARAKGAGEMTILLRHVLPNIRSTLLTVIALAYTSML 276
Cdd:PRK10417 133 IIAIALSHWAWYARMVRSLVISLRQREFVLAARLSGAGHVRVFIDHLLPAVIPQLLVLATLDIGHMM 199
PRK15082 PRK15082
glutathione ABC transporter permease GsiD; Provisional
210-292 1.77e-03

glutathione ABC transporter permease GsiD; Provisional


Pssm-ID: 185040 [Multi-domain]  Cd Length: 301  Bit Score: 39.71  E-value: 1.77e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 210 VLLLAYYSLASITRLTRSACLGEMNKEYILLARAKGAGEMTILLRHVLPNIRSTlltvIALAYTSMLEGAVLTETVFSWP 289
Cdd:PRK15082 166 IIAVAIFSIPAFARLVRGNTLVLKQQTYIESARSIGASDWTILLRHILPGTVSS----IVVYFTMRIGTSIITAASLSFL 241

                 ...
gi 850367449 290 GIG 292
Cdd:PRK15082 242 GLG 244
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
92-273 3.94e-03

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 38.17  E-value: 3.94e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449  92 QDLLHAFPATLELATLALIIGTVLGVIAGVLCARYAGsPLDLAIRTLTLLGNSVPIFWLGLLMLaLFYARLQWSAGPgrl 171
Cdd:COG1177   57 PRLLDALLNSLLIALLSTLLATVLGTPAALALARYRF-RGRRLLLALLLLPLVVPGIVLGVALL-LLFSALGLSGGL--- 131
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 172 ddiwqftveprtgFALIdtwlsgdreafrnaLSHLVLpvlllayySLASITRLTRSAcLGEMNKEYILLARAKGAGEMTI 251
Cdd:COG1177  132 -------------WGLI--------------LAHVVF--------TLPFVVLVVLAR-LQGFDPSLEEAARDLGASPWQT 175
                        170       180
                 ....*....|....*....|..
gi 850367449 252 LLRHVLPNIRSTLLTVIALAYT 273
Cdd:COG1177  176 FRRVTLPLIAPGILAGALLAFT 197
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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