|
Name |
Accession |
Description |
Interval |
E-value |
| DppB |
COG0601 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
25-337 |
1.36e-105 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440366 [Multi-domain] Cd Length: 314 Bit Score: 311.62 E-value: 1.36e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 25 VTFALSAFSPVDRVLQIVGDHASQSTYDQVRHQLGLDRPLPVQFWHYLQNLAHGDLGTASATGQPVLQDLLHAFPATLEL 104
Cdd:COG0601 22 LVFLLLRLLPGDPAAALLGPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTSFVYGRPVSDLIAERLPVTLEL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 105 ATLALIIGTVLGVIAGVLCARYAGSPLDLAIRTLTLLGNSVPIFWLGLLMLALFYARLQWSAGPGRLDDIwqftveprtg 184
Cdd:COG0601 102 ALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKLGWLPVSGRVSPW---------- 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 185 falidtwlsgdrEAFRNALSHLVLPVLLLAYYSLASITRLTRSACLGEMNKEYILLARAKGAGEMTILLRHVLPNIRSTL 264
Cdd:COG0601 172 ------------EDFLDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPV 239
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 850367449 265 LTVIALAYTSMLEGAVLTETVFSWPGIGRYLTTALFAGDTTAVMGGTLLIGVCFVLINNLTDLLVRATDPRVR 337
Cdd:COG0601 240 VTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIR 312
|
|
| PRK10914 |
PRK10914 |
dipeptide ABC transporter permease DppB; |
25-337 |
2.70e-66 |
|
dipeptide ABC transporter permease DppB;
Pssm-ID: 182834 [Multi-domain] Cd Length: 339 Bit Score: 211.98 E-value: 2.70e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 25 VTFALSAFSPVDRVLQIVGDHA-SQSTYDQVRHQLGLDRPLPVQFWHYLQNLAHGDLGTASATGQPVLQDLLHAFPATLE 103
Cdd:PRK10914 22 LTFAFVHMIPGDPVMIMAGERGiSPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGISLKSRIPVWDEFVPRFKATLE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 104 LATLALIIGTVLGVIAGVLCARYAGSPLDLAIRTLTLLGNSVPIFWLGLLMLALFYARLQWSAGPGRLDD-IWQFTVEPR 182
Cdd:PRK10914 102 LGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGRVSDmVFLDDSNPL 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 183 TGFALIDTWLSGDREAFRNALSHLVLPVLLLAYYSLASITRLTRSACLGEMNKEYILLARAKGAGEMTILLRHVLPNIRS 262
Cdd:PRK10914 182 TGFMLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIIVHALRNAML 261
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 850367449 263 TLLTVIALAYTSMLEGAVLTETVFSWPGIGRYLTTALFAGDTTAVMGGTLLIGVCFVLINNLTDLLVRATDPRVR 337
Cdd:PRK10914 262 PVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIR 336
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
116-337 |
4.90e-26 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 102.38 E-value: 4.90e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 116 GVIAGVLCARYAGSPLDLAIRTLTLLGNSVPIFWLGLLMLALFyarlqwsagpgrlddiwqftveprtgfalidtwlsgd 195
Cdd:pfam00528 1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA------------------------------------- 43
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 196 reaFRNALSHLVLPVLLLAYYSLASITRLTRSACLGEMNKEYILLARAKGAGEMTILLRHVLPNIRSTLLTVIALAYTSM 275
Cdd:pfam00528 44 ---ILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGA 120
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 850367449 276 LEGAVLTETVFSWPGIGRYLTTALFAGDTTAVMGGTLLIGVCFVLINNLTDLLVRATDPRVR 337
Cdd:pfam00528 121 LGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRVR 182
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
98-314 |
1.20e-17 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 79.63 E-value: 1.20e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 98 FPATLELATLALIIGTVLGVIAGVLCARYAGsPLDLAIRTLTLLGNSVPIFWLGLLMLALFYARLQWSAGPgrlddiwqf 177
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRG-KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILP--------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 178 tveprtgfalidtwlsgdreafrnalsHLVLPVLLLAYYSLASITRLTRSACLGEMNKEYILLARAKGAGEMTILLRHVL 257
Cdd:cd06261 71 ---------------------------GLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIIL 123
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 850367449 258 PNIRSTLLTVIALAYTSMLEGAVLTETVFS----WPGIGRYLTTALFAGDTTAVMGGTLLI 314
Cdd:cd06261 124 PLALPPILTGLVLAFARALGEFALVSFLGGgeapGPGTGLLLIFAILFPGDLGVAAAVALI 184
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| DppB |
COG0601 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
25-337 |
1.36e-105 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440366 [Multi-domain] Cd Length: 314 Bit Score: 311.62 E-value: 1.36e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 25 VTFALSAFSPVDRVLQIVGDHASQSTYDQVRHQLGLDRPLPVQFWHYLQNLAHGDLGTASATGQPVLQDLLHAFPATLEL 104
Cdd:COG0601 22 LVFLLLRLLPGDPAAALLGPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTSFVYGRPVSDLIAERLPVTLEL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 105 ATLALIIGTVLGVIAGVLCARYAGSPLDLAIRTLTLLGNSVPIFWLGLLMLALFYARLQWSAGPGRLDDIwqftveprtg 184
Cdd:COG0601 102 ALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKLGWLPVSGRVSPW---------- 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 185 falidtwlsgdrEAFRNALSHLVLPVLLLAYYSLASITRLTRSACLGEMNKEYILLARAKGAGEMTILLRHVLPNIRSTL 264
Cdd:COG0601 172 ------------EDFLDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPV 239
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 850367449 265 LTVIALAYTSMLEGAVLTETVFSWPGIGRYLTTALFAGDTTAVMGGTLLIGVCFVLINNLTDLLVRATDPRVR 337
Cdd:COG0601 240 VTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIR 312
|
|
| SapB |
COG4168 |
ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms]; |
67-337 |
1.95e-80 |
|
ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];
Pssm-ID: 443329 [Multi-domain] Cd Length: 321 Bit Score: 247.83 E-value: 1.95e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 67 QFWHYLQNLAHGDLGTASATGQPVLQDLLHAFPATLELATLALIIGTVLGVIAGVLCARYAGSPLDLAIRTLTLLGNSVP 146
Cdd:COG4168 43 GYLFYLQNLLQGDFGISSINGEPILEQLLTVFPATLELCFLAFLLALLIGIPLGILAGIYRGKWLDKLISSLSLLGFSIP 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 147 IFWLGLLMLALFYARLQWSAGPGRLDDIWQftVEPRTGFALIDTWLSGD---REAFRNALSHLVLPVLLLAYYSLASITR 223
Cdd:COG4168 123 VFWLALLLILFFSLNLGWLPVSGRYNLLYE--IPPVTGFALIDAWLSDSpyrLKAIQSALQHLILPTLVLAVAPTTEVIR 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 224 LTRSACLGEMNKEYILLARAKGAGEMTILLRHVLPNIRSTLLTVIALAYTSMLEGAVLTETVFSWPGIGRYLTTALFAGD 303
Cdd:COG4168 201 LTRQSTEEVMNQNYIKAAATRGLSRFTIIRRHVLRNALPPIIPQLGLQFSTMLTLAMITEVVFSWPGIGRWLINAIRQQD 280
|
250 260 270
....*....|....*....|....*....|....
gi 850367449 304 TTAVMGGTLLIGVCFVLINNLTDLLVRATDPRVR 337
Cdd:COG4168 281 YAAISAGVIVIGTFVIIVNILSDILGALLNPLKR 314
|
|
| PRK10914 |
PRK10914 |
dipeptide ABC transporter permease DppB; |
25-337 |
2.70e-66 |
|
dipeptide ABC transporter permease DppB;
Pssm-ID: 182834 [Multi-domain] Cd Length: 339 Bit Score: 211.98 E-value: 2.70e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 25 VTFALSAFSPVDRVLQIVGDHA-SQSTYDQVRHQLGLDRPLPVQFWHYLQNLAHGDLGTASATGQPVLQDLLHAFPATLE 103
Cdd:PRK10914 22 LTFAFVHMIPGDPVMIMAGERGiSPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGISLKSRIPVWDEFVPRFKATLE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 104 LATLALIIGTVLGVIAGVLCARYAGSPLDLAIRTLTLLGNSVPIFWLGLLMLALFYARLQWSAGPGRLDD-IWQFTVEPR 182
Cdd:PRK10914 102 LGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGRVSDmVFLDDSNPL 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 183 TGFALIDTWLSGDREAFRNALSHLVLPVLLLAYYSLASITRLTRSACLGEMNKEYILLARAKGAGEMTILLRHVLPNIRS 262
Cdd:PRK10914 182 TGFMLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIIVHALRNAML 261
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 850367449 263 TLLTVIALAYTSMLEGAVLTETVFSWPGIGRYLTTALFAGDTTAVMGGTLLIGVCFVLINNLTDLLVRATDPRVR 337
Cdd:PRK10914 262 PVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIR 336
|
|
| PRK15110 |
PRK15110 |
peptide ABC transporter permease SapB; |
25-334 |
2.03e-54 |
|
peptide ABC transporter permease SapB;
Pssm-ID: 185065 [Multi-domain] Cd Length: 321 Bit Score: 180.66 E-value: 2.03e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 25 VTFALSAFSPvdrvlqivgdHASQStydqvrhqlglDRPLPVQFWHYLQNLAHGDLGTASATGQPVLQDLLHAFPATLEL 104
Cdd:PRK15110 22 VGFSLSYFTP----------HAPLQ-----------GASLWDAWVFWFNGLLHWDFGVSSINGQPISEQLKEVFPATMEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 105 A----TLALIIGTVLGVIAGVLCARYAgsplDLAIRTLTLLGNSVPIFWLGLLMLALFYARLQWSAGPGRLDDIWQftVE 180
Cdd:PRK15110 81 CilafGFALLVGIPVGIIAGVTRHKWQ----DNLISALALLGFSIPVFWLALLLTLFFSLTLGWLPVSGRFDLLYE--VK 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 181 PRTGFALIDTWLSGD---REAFRNALSHLVLPVLLLAYYSLASITRLTRSACLGEMNKEYILLARAKGAGEMTILLRHVL 257
Cdd:PRK15110 155 PVTGFALIDAWLSDSpwrDEMIMSAIRHMILPVITLAVAPTTEVIRLMRISTIEVYDQNYVKAAATRGLSRFTILRRHVL 234
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 850367449 258 PNIRSTLLTVIALAYTSMLEGAVLTETVFSWPGIGRYLTTALFAGDTTAVMGGTLLIGVCFVLINNLTDLLVRATDP 334
Cdd:PRK15110 235 HNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAIRQQDYAAISAGVMVVGSLVIIVNVLSDILGAMANP 311
|
|
| PRK10352 |
PRK10352 |
nickel transporter permease NikB; Provisional |
54-337 |
4.13e-53 |
|
nickel transporter permease NikB; Provisional
Pssm-ID: 182400 [Multi-domain] Cd Length: 314 Bit Score: 177.20 E-value: 4.13e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 54 VRHQLGLDRPLPVQFWHYLQNLAHGDLGTASATGQPVLQDLLHAFPATLELATLALIIGTVLGVIAGVLCARYAGSPLDL 133
Cdd:PRK10352 54 TRTMLGLDQPLYVQYGTWLWKALHLDFGISFATQRPVLDDLLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDF 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 134 AIRTLTLLGNSVPIFWLGLLMLALFYARLQWSAGPGrlddiwqftveprtgfalidtwlsgdreafRNALSHLVLPVLLL 213
Cdd:PRK10352 134 AVRFIAFLGVSMPNFWLAFLLVMAFSVYLQWLPAMG------------------------------YGGWQHIILPAVSI 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 214 AYYSLASITRLTRSACLGEMNKEYILLARAKGAGEMTILLRHVLPNIRSTLLTVIALAYTSMLEGAVLTETVFSWPGIGR 293
Cdd:PRK10352 184 AFMSLAINARLLRASMLEVAGQRHVTWARLRGLSERQVERRHILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGR 263
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 850367449 294 YLTTALFAGDTTAVMGGTLLIGVCFVLINNLTDLLVRATDPRVR 337
Cdd:PRK10352 264 YAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDPRIR 307
|
|
| PRK15081 |
PRK15081 |
glutathione ABC transporter permease GsiC; Provisional |
34-337 |
4.82e-44 |
|
glutathione ABC transporter permease GsiC; Provisional
Pssm-ID: 185039 [Multi-domain] Cd Length: 306 Bit Score: 153.33 E-value: 4.82e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 34 PVDRVLQIVGDHASQSTYDQVRHQLGLDRPLPVQFWHYLQNLAHGDLGTASATGQPVLQDLLHAFPATLELATLALIIGT 113
Cdd:PRK15081 31 PGDPARLAAGPEADAQVVALVRQQLGLDQPLPHQFWHYISNALQGDFGTSMVSRRPVSEEIASRFMPTLWLTITSMVWAV 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 114 VLGVIAGVLCARYAGSPLDLAIRTLTLLGNSVPIFWLGLLMLALFYARLQWSAGPGrlDDIWQftveprtgfalidtwls 193
Cdd:PRK15081 111 IFGMAIGIASAVWRNRWPDRLGMTLAVSGISFPAFALGMLLMQVFSVELGWLPTVG--ADSWQ----------------- 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 194 gdreafrnalsHLVLPVLLLAYYSLASITRLTRSACLGEMNKEYILLARAKGAGEMTILLRHVLPNIRSTLLTVIALAYT 273
Cdd:PRK15081 172 -----------HYILPSLTLGAAVAAVMARFTRASFVEVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFG 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 850367449 274 SMLEGAVLTETVFSWPGIGRYLTTALFAGDTTAVMGGTLLIGVCFVLINNLTDLLVRATDPRVR 337
Cdd:PRK15081 241 FLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIR 304
|
|
| oppB |
PRK09471 |
oligopeptide ABC transporter permease OppB; |
59-337 |
9.71e-36 |
|
oligopeptide ABC transporter permease OppB;
Pssm-ID: 181886 [Multi-domain] Cd Length: 306 Bit Score: 131.34 E-value: 9.71e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 59 GLDRPLPVQFWHYLQNLAHGDLGTASATGQPVLQDLL-HAFPATLELATLALIIGTVLGVIAGVLCARYAGSPLDLAIRT 137
Cdd:PRK09471 54 HLNDPIMTQYFSYLKQLAHGDFGPSFKYKDYSVNDLVaSSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMG 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 138 LTLLGNSVPIFWLGLLMLALFYARLQWSAGPGrlddiwqftveprtgfalidtWLSGdreafrnALSHLVLPVLLLAYYS 217
Cdd:PRK09471 134 FAMTGVVIPSFVVAPLLVLIFAITLHWLPGGG---------------------WNGG-------ALKFMILPMVALSLAY 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 218 LASITRLTRSACLGEMNKEYILLARAKGAGEMTILLRHVLpniRSTLLTVIAL---AYTSMLEGAVLTETVFSWPGIGRY 294
Cdd:PRK09471 186 IASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHAL---KPALLPVLSYmgpAFVGIITGSMVIETIFGLPGIGQL 262
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 850367449 295 LTTALFAGDTTAVMGGTLLIGVCFVLINNLTDLLVRATDPRVR 337
Cdd:PRK09471 263 FVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIR 305
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
116-337 |
4.90e-26 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 102.38 E-value: 4.90e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 116 GVIAGVLCARYAGSPLDLAIRTLTLLGNSVPIFWLGLLMLALFyarlqwsagpgrlddiwqftveprtgfalidtwlsgd 195
Cdd:pfam00528 1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA------------------------------------- 43
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 196 reaFRNALSHLVLPVLLLAYYSLASITRLTRSACLGEMNKEYILLARAKGAGEMTILLRHVLPNIRSTLLTVIALAYTSM 275
Cdd:pfam00528 44 ---ILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGA 120
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 850367449 276 LEGAVLTETVFSWPGIGRYLTTALFAGDTTAVMGGTLLIGVCFVLINNLTDLLVRATDPRVR 337
Cdd:pfam00528 121 LGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRVR 182
|
|
| PRK15133 |
PRK15133 |
microcin C ABC transporter permease YejB; Provisional |
53-336 |
5.75e-24 |
|
microcin C ABC transporter permease YejB; Provisional
Pssm-ID: 185087 [Multi-domain] Cd Length: 364 Bit Score: 100.59 E-value: 5.75e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 53 QVRHQLGLDRPLPVQFWHYLQNLAHGDLGTASATGQPVLQDLLHAFPATLELATLALIIGTVLGVIAGVLCARYAGSPLD 132
Cdd:PRK15133 88 EITHRYGFDKPLHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAVRNGSRFD 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 133 LAIRTLTLLGNSVPIFWLGLLMLALFyarlqwsAGPGRLDdiwqftVEPRTGF--ALIDT--WLSgdreAFRNALSHLVL 208
Cdd:PRK15133 168 VWSSAFIIIGYAIPAFLFAILLIVFF-------AGGSYFD------LFPLRGLvsANFDSlpWYQ----KITDYLWHITL 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 209 PVLLLAYYSLASITRLTRSACLGEMNKEYILLARAKGAGEMTILLRHVLpniRSTLLTVIA---LAYTSM-LEGAVLTET 284
Cdd:PRK15133 231 PVLATVIGGFAALTMLTKNSFLDEIRKQYVVTARAKGVSEKNILWKHVF---RNAMLLVIAgfpATFISMfFTGSLLIEV 307
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 850367449 285 VFSWPGIGRYLTTALFAGDtTAVMGGTL----LIGvcfVLINNLTDLLVRATDPRV 336
Cdd:PRK15133 308 MFSLNGLGLLGYEATVSRD-YPVMFGTLyiftLIG---LLLNIVSDISYTLVDPRI 359
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
98-314 |
1.20e-17 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 79.63 E-value: 1.20e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 98 FPATLELATLALIIGTVLGVIAGVLCARYAGsPLDLAIRTLTLLGNSVPIFWLGLLMLALFYARLQWSAGPgrlddiwqf 177
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRG-KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILP--------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 178 tveprtgfalidtwlsgdreafrnalsHLVLPVLLLAYYSLASITRLTRSACLGEMNKEYILLARAKGAGEMTILLRHVL 257
Cdd:cd06261 71 ---------------------------GLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIIL 123
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 850367449 258 PNIRSTLLTVIALAYTSMLEGAVLTETVFS----WPGIGRYLTTALFAGDTTAVMGGTLLI 314
Cdd:cd06261 124 PLALPPILTGLVLAFARALGEFALVSFLGGgeapGPGTGLLLIFAILFPGDLGVAAAVALI 184
|
|
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
80-292 |
6.52e-14 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 70.91 E-value: 6.52e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 80 LGTaSATGQPVLQDLLHAFPATLELATLALIIGTVLGVIAGVLCArYAGSPLDLAIRTLTLLGNSVPIFWLGLLMLALFy 159
Cdd:COG1173 61 LGT-DQLGRDVLSRLLYGARISLLVGLLAVLIALVIGVLLGLLAG-YFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVL- 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 160 arlqwsaGPGrlddiwqftveprtgfalidtwlsgdreafrnalshLVLPVLLLAYYSLASITRLTRSACLGEMNKEYIL 239
Cdd:COG1173 138 -------GPG------------------------------------LLNVILALGLTGWPGYARLVRAQVLSLREREYVE 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 850367449 240 LARAKGAGEMTILLRHVLPNIRSTLLTVIALaytsMLEGAVLTETVFSWPGIG 292
Cdd:COG1173 175 AARALGASPLRIIFRHILPNVLPPLIVQATL----GIASAILAEAGLSFLGLG 223
|
|
| BPD_transp_1_N |
pfam19300 |
Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal ... |
25-105 |
2.65e-12 |
|
Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal transmembrane domain of the Binding-protein-dependent transport system inner membrane component.
Pssm-ID: 437132 [Multi-domain] Cd Length: 114 Bit Score: 62.62 E-value: 2.65e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 25 VTFALSAFSPVDRVLQIVGDHASQSTYDQVRHQLGLDRPLPVQFWHYLQNLAHGD------------LGTASATGQPVLQ 92
Cdd:pfam19300 22 VTFFLFYAIPRDPARLACGKNCTPETLALIRHNLGLDKPIPVQYWHFLSGIFAGRdfgavghcpapcLGYSFANNEPVWD 101
|
90
....*....|...
gi 850367449 93 DLLHAFPATLELA 105
Cdd:pfam19300 102 TIMDRFPTTLSLA 114
|
|
| TauC |
COG0600 |
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ... |
93-330 |
7.85e-07 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440365 [Multi-domain] Cd Length: 254 Bit Score: 49.38 E-value: 7.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 93 DLLHAFPATLELATLALIIGTVLGVIAGVLCARYAgsPLDLAIRTLTLLGNSVPIF-WLGLLMLalfyarlqwsagpgrl 171
Cdd:COG0600 58 ELWEHLLASLLRVLLGFALAALLGVPLGLLLGLSR--LLRRLLDPLLVFLRPIPPLaLAPLLIL---------------- 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 172 ddiwqftveprtgfalidtWLSGDREAfrnalshlvlPVLLLAYYSLASITRLTRSAcLGEMNKEYILLARAKGAGEMTI 251
Cdd:COG0600 120 -------------------WFGIGEAS----------KIFVIFLGAFFPILLNTAAG-VRSVDPELLELARSLGASRWQI 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 850367449 252 LLRHVLPNIRSTLLTVIALAYTSMLEGAVLTETVFSWPGIGRYLTTALFAGDTTAVMGGTLLIGVCFVLINNLTDLLVR 330
Cdd:COG0600 170 LRKVVLPAALPYIFTGLRIALGLAWIGLVVAELLGASSGLGYLILDARQLLDTDLVFAAILVIGLLGLLLDLLLRLLER 248
|
|
| PRK10913 |
PRK10913 |
dipeptide ABC transporter permease DppC; |
87-274 |
6.77e-06 |
|
dipeptide ABC transporter permease DppC;
Pssm-ID: 182833 [Multi-domain] Cd Length: 300 Bit Score: 47.08 E-value: 6.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 87 GQPVLQDLLHAFPATLELATLALIIGTVLGVIAGVLcARYAGSPLDLAIRTLTLLGNSVPIFWLGLLMLALFyarlqwsa 166
Cdd:PRK10913 87 GRDVLSRLMYGARLSLLVGCLVVVLSLVMGVILGLI-AGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIF-------- 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 167 GPGrlddiwqftveprtgfalidtwlsgdreafrnalshLVLPVLLLAYYSLASITRLTRSACLGEMNKEYILLARAKGA 246
Cdd:PRK10913 158 GPS------------------------------------IVNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGA 201
|
170 180
....*....|....*....|....*...
gi 850367449 247 GEMTILLRHVLPNIRSTLLTVIALAYTS 274
Cdd:PRK10913 202 GAMRQMFINILPNCLAPLIVQASLGFSN 229
|
|
| YejE |
COG4239 |
ABC-type microcin C transport system, permease component YejE [Secondary metabolites ... |
210-266 |
2.52e-04 |
|
ABC-type microcin C transport system, permease component YejE [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443381 [Multi-domain] Cd Length: 342 Bit Score: 42.45 E-value: 2.52e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 850367449 210 VLLLAYYSLASITRLTRSACLGEMNKEYILLARAKGAGEMTILLRHVLPNIRSTLLT 266
Cdd:COG4239 207 LGILLLFGWMGLVGVVRAEFLRARNLEYVRAARALGVSDRRIMFRHILPNAMVATLT 263
|
|
| SapC |
COG4171 |
ABC-type antimicrobial peptide export system, permease component SapC [Defense mechanisms]; |
221-282 |
5.74e-04 |
|
ABC-type antimicrobial peptide export system, permease component SapC [Defense mechanisms];
Pssm-ID: 443331 [Multi-domain] Cd Length: 296 Bit Score: 40.95 E-value: 5.74e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 850367449 221 ITRLTRSACLGEMNKEYILLARAKGAGEMTILLRHVLPNIRSTLLTVIALAYT-SMLEGAVLT 282
Cdd:COG4171 173 FIHAIYQAVHQELKKEYVLAARLDGASNWQLLRYSILPNILEVLVTELTRALSiAILDISALG 235
|
|
| nikC |
PRK10417 |
nickel transporter permease NikC; Provisional |
210-276 |
1.61e-03 |
|
nickel transporter permease NikC; Provisional
Pssm-ID: 236687 [Multi-domain] Cd Length: 272 Bit Score: 39.65 E-value: 1.61e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 850367449 210 VLLLAYYSLASITRLTRSACLGEMNKEYILLARAKGAGEMTILLRHVLPNIRSTLLTVIALAYTSML 276
Cdd:PRK10417 133 IIAIALSHWAWYARMVRSLVISLRQREFVLAARLSGAGHVRVFIDHLLPAVIPQLLVLATLDIGHMM 199
|
|
| PRK15082 |
PRK15082 |
glutathione ABC transporter permease GsiD; Provisional |
210-292 |
1.77e-03 |
|
glutathione ABC transporter permease GsiD; Provisional
Pssm-ID: 185040 [Multi-domain] Cd Length: 301 Bit Score: 39.71 E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 210 VLLLAYYSLASITRLTRSACLGEMNKEYILLARAKGAGEMTILLRHVLPNIRSTlltvIALAYTSMLEGAVLTETVFSWP 289
Cdd:PRK15082 166 IIAVAIFSIPAFARLVRGNTLVLKQQTYIESARSIGASDWTILLRHILPGTVSS----IVVYFTMRIGTSIITAASLSFL 241
|
...
gi 850367449 290 GIG 292
Cdd:PRK15082 242 GLG 244
|
|
| PotC |
COG1177 |
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ... |
92-273 |
3.94e-03 |
|
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];
Pssm-ID: 440790 [Multi-domain] Cd Length: 262 Bit Score: 38.17 E-value: 3.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 92 QDLLHAFPATLELATLALIIGTVLGVIAGVLCARYAGsPLDLAIRTLTLLGNSVPIFWLGLLMLaLFYARLQWSAGPgrl 171
Cdd:COG1177 57 PRLLDALLNSLLIALLSTLLATVLGTPAALALARYRF-RGRRLLLALLLLPLVVPGIVLGVALL-LLFSALGLSGGL--- 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 850367449 172 ddiwqftveprtgFALIdtwlsgdreafrnaLSHLVLpvlllayySLASITRLTRSAcLGEMNKEYILLARAKGAGEMTI 251
Cdd:COG1177 132 -------------WGLI--------------LAHVVF--------TLPFVVLVVLAR-LQGFDPSLEEAARDLGASPWQT 175
|
170 180
....*....|....*....|..
gi 850367449 252 LLRHVLPNIRSTLLTVIALAYT 273
Cdd:COG1177 176 FRRVTLPLIAPGILAGALLAFT 197
|
|
|