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Conserved domains on  [gi|852028666|ref|WP_048259757|]
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chaperone NapD [Pectobacterium peruviense]

Protein Classification

chaperone NapD( domain architecture ID 10013560)

chaperone NapD binds specifically to the twin-arginine signal peptide of NapA, the catalytic subunit of the periplasmic nitrate reductase, preventing premature interaction with the Tat translocase and premature export

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10553 PRK10553
chaperone NapD;
1-82 1.75e-41

chaperone NapD;


:

Pssm-ID: 182542  Cd Length: 87  Bit Score: 131.46  E-value: 1.75e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 852028666   1 MSTVWHVCSVVVHVNTERMAAVGDALEKLPNVEVAASDSDTGKMAVVLESDSEDTLLKHIASIRELAGVLAVSLVYHQLD 80
Cdd:PRK10553   1 MHTNWQVCSLVVQAKSERISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLLQTIESVRNVEGVLAVSLVYHQQD 80


                 ..
gi 852028666  81 EQ 82
Cdd:PRK10553  81 EQ 82
 
Name Accession Description Interval E-value
PRK10553 PRK10553
chaperone NapD;
1-82 1.75e-41

chaperone NapD;


Pssm-ID: 182542  Cd Length: 87  Bit Score: 131.46  E-value: 1.75e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 852028666   1 MSTVWHVCSVVVHVNTERMAAVGDALEKLPNVEVAASDSDTGKMAVVLESDSEDTLLKHIASIRELAGVLAVSLVYHQLD 80
Cdd:PRK10553   1 MHTNWQVCSLVVQAKSERISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLLQTIESVRNVEGVLAVSLVYHQQD 80


                 ..
gi 852028666  81 EQ 82
Cdd:PRK10553  81 EQ 82
NapD COG3062
Cytoplasmic chaperone NapD for the signal peptide of periplasmic nitrate reductase NapAB ...
 1-83 7.33e-27

Cytoplasmic chaperone NapD for the signal peptide of periplasmic nitrate reductase NapAB [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 442296  Cd Length: 86  Bit Score: 94.53  E-value: 7.33e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 852028666   1 MSTVWHVCSVVVHVNTERMAAVGDALEKLPNVEVAASdSDTGKMAVVLESDSEDTLLKHIASIRELAGVLAVSLVYHQLD 80
Cdd:COG3062    1 MSDEMHISSLVVQARPERLEAVAAALAALPGVEVHAS-SEEGKLVVVIEAESQGALLDTIEAIRALPGVLSVSLVYHQFE 79


                 ...
gi 852028666  81 EQS 83
Cdd:COG3062   80 EEE 82
NapD pfam03927
NapD protein; Uncharacterized protein involved in formation of periplasmic nitrate reductase.
 7-78 1.19e-22

NapD protein; Uncharacterized protein involved in formation of periplasmic nitrate reductase.


Pssm-ID: 427593  Cd Length: 71  Bit Score: 83.30  E-value: 1.19e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 852028666    7 VCSVVVHVNTERMAAVGDALEKLPNVEVAASDsDTGKMAVVLESDSEDTLLKHIASIRELAGVLAVSLVYHQ 78
Cdd:pfam03927   1 ISSLVVQVRPERLAAVKEALAALPGVEVHAED-EEGKLVVVIEAESQGEILDIIDAINALPGVLSASLVYHH 71
 
Name Accession Description Interval E-value
PRK10553 PRK10553
chaperone NapD;
1-82 1.75e-41

chaperone NapD;


Pssm-ID: 182542  Cd Length: 87  Bit Score: 131.46  E-value: 1.75e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 852028666   1 MSTVWHVCSVVVHVNTERMAAVGDALEKLPNVEVAASDSDTGKMAVVLESDSEDTLLKHIASIRELAGVLAVSLVYHQLD 80
Cdd:PRK10553   1 MHTNWQVCSLVVQAKSERISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLLQTIESVRNVEGVLAVSLVYHQQD 80


                 ..
gi 852028666  81 EQ 82
Cdd:PRK10553  81 EQ 82
NapD COG3062
Cytoplasmic chaperone NapD for the signal peptide of periplasmic nitrate reductase NapAB ...
 1-83 7.33e-27

Cytoplasmic chaperone NapD for the signal peptide of periplasmic nitrate reductase NapAB [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 442296  Cd Length: 86  Bit Score: 94.53  E-value: 7.33e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 852028666   1 MSTVWHVCSVVVHVNTERMAAVGDALEKLPNVEVAASdSDTGKMAVVLESDSEDTLLKHIASIRELAGVLAVSLVYHQLD 80
Cdd:COG3062    1 MSDEMHISSLVVQARPERLEAVAAALAALPGVEVHAS-SEEGKLVVVIEAESQGALLDTIEAIRALPGVLSVSLVYHQFE 79


                 ...
gi 852028666  81 EQS 83
Cdd:COG3062   80 EEE 82
NapD pfam03927
NapD protein; Uncharacterized protein involved in formation of periplasmic nitrate reductase.
 7-78 1.19e-22

NapD protein; Uncharacterized protein involved in formation of periplasmic nitrate reductase.


Pssm-ID: 427593  Cd Length: 71  Bit Score: 83.30  E-value: 1.19e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 852028666    7 VCSVVVHVNTERMAAVGDALEKLPNVEVAASDsDTGKMAVVLESDSEDTLLKHIASIRELAGVLAVSLVYHQ 78
Cdd:pfam03927   1 ISSLVVQVRPERLAAVKEALAALPGVEVHAED-EEGKLVVVIEAESQGEILDIIDAINALPGVLSASLVYHH 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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