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Conserved domains on  [gi|852258389|ref|WP_048323820|]
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MULTISPECIES: amino acid-binding protein [Klebsiella]

Protein Classification

ACTx2 family protein( domain architecture ID 11469125)

ACTx2 family protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ACTx2 COG4747
ACT domain-containing protein [General function prediction only];
2-127 3.91e-43

ACT domain-containing protein [General function prediction only];


:

Pssm-ID: 443781 [Multi-domain]  Cd Length: 129  Bit Score: 137.96  E-value: 3.91e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 852258389   2 YDIHVILSNAPGSLGAMGIALGNNGVGLEGGGVFTTPDAGHAHFLVEDGETARRVLTEAGFTVSdVCRPLIRKLPqERPG 81
Cdd:COG4747    1 KQISVFLENKPGRLAEVTRLLGDAGINIRALSIADTSDFGILRLIVDDPEKAREVLKEAGFTVS-ETDVLAVELP-DRPG 78
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 852258389  82 ELGDIADTLARNGINILVQYSDH-----RNRLILLTDDDTRAAEVTKKWAI 127
Cdd:COG4747   79 GLAEILKALAEAGINIEYMYAFVgrpggKAVLILRVDDLEKAIEVLKENGI 129
 
Name Accession Description Interval E-value
ACTx2 COG4747
ACT domain-containing protein [General function prediction only];
2-127 3.91e-43

ACT domain-containing protein [General function prediction only];


Pssm-ID: 443781 [Multi-domain]  Cd Length: 129  Bit Score: 137.96  E-value: 3.91e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 852258389   2 YDIHVILSNAPGSLGAMGIALGNNGVGLEGGGVFTTPDAGHAHFLVEDGETARRVLTEAGFTVSdVCRPLIRKLPqERPG 81
Cdd:COG4747    1 KQISVFLENKPGRLAEVTRLLGDAGINIRALSIADTSDFGILRLIVDDPEKAREVLKEAGFTVS-ETDVLAVELP-DRPG 78
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 852258389  82 ELGDIADTLARNGINILVQYSDH-----RNRLILLTDDDTRAAEVTKKWAI 127
Cdd:COG4747   79 GLAEILKALAEAGINIEYMYAFVgrpggKAVLILRVDDLEKAIEVLKENGI 129
ACT_Bt0572_1 cd04908
N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains; ...
4-65 9.68e-08

N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains; Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.


Pssm-ID: 153180  Cd Length: 66  Bit Score: 45.65  E-value: 9.68e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 852258389   4 IHVILSNAPGSLGAMGIALGNNGVGLEGGGVFTTPDAGHAHFLVEDGETARRVLTEAGFTVS 65
Cdd:cd04908    4 LSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALKEAGFAVK 65
 
Name Accession Description Interval E-value
ACTx2 COG4747
ACT domain-containing protein [General function prediction only];
2-127 3.91e-43

ACT domain-containing protein [General function prediction only];


Pssm-ID: 443781 [Multi-domain]  Cd Length: 129  Bit Score: 137.96  E-value: 3.91e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 852258389   2 YDIHVILSNAPGSLGAMGIALGNNGVGLEGGGVFTTPDAGHAHFLVEDGETARRVLTEAGFTVSdVCRPLIRKLPqERPG 81
Cdd:COG4747    1 KQISVFLENKPGRLAEVTRLLGDAGINIRALSIADTSDFGILRLIVDDPEKAREVLKEAGFTVS-ETDVLAVELP-DRPG 78
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 852258389  82 ELGDIADTLARNGINILVQYSDH-----RNRLILLTDDDTRAAEVTKKWAI 127
Cdd:COG4747   79 GLAEILKALAEAGINIEYMYAFVgrpggKAVLILRVDDLEKAIEVLKENGI 129
ACT_Bt0572_1 cd04908
N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains; ...
4-65 9.68e-08

N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains; Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.


Pssm-ID: 153180  Cd Length: 66  Bit Score: 45.65  E-value: 9.68e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 852258389   4 IHVILSNAPGSLGAMGIALGNNGVGLEGGGVFTTPDAGHAHFLVEDGETARRVLTEAGFTVS 65
Cdd:cd04908    4 LSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALKEAGFAVK 65
ACT_Bt0572_2 cd04882
C-terminal ACT domain of a novel protein composed of just two ACT domains; Included in this CD ...
6-64 4.04e-03

C-terminal ACT domain of a novel protein composed of just two ACT domains; Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.


Pssm-ID: 153154  Cd Length: 65  Bit Score: 33.73  E-value: 4.04e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 852258389   6 VILSNAPGSLGAMGIALGNNGVGLEGGGVFTTPDAGHAHFL--VEDGETARRVLTEAGFTV 64
Cdd:cd04882    4 VEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIfrTEDIEKAIEVLQERGVEL 64
ACT cd02116
ACT domains are commonly involved in specifically binding an amino acid or other small ligand ...
77-124 5.94e-03

ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme; Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times.


Pssm-ID: 153139 [Multi-domain]  Cd Length: 60  Bit Score: 33.03  E-value: 5.94e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 852258389  77 QERPGELGDIADTLARNGINIL-VQYSDHRN----RLILLTDDDTRAAEVTKK 124
Cdd:cd02116    6 PDRPGLLAKVLSVLAEAGINITsIEQRTSGDggeaDIFIVVDGDGDLEKLLEA 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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