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Conserved domains on  [gi|873902149|ref|WP_048608582|]
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MULTISPECIES: ATP synthase subunit I [Vibrio]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATP-synt_I super family cl46479
ATP synthase I chain; The atp operon of alkaliphilic Bacillus pseudofirmus OF4, as in most ...
 14-130 2.88e-04

ATP synthase I chain; The atp operon of alkaliphilic Bacillus pseudofirmus OF4, as in most prokaryotes, contains the eight structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein with 2 TMSs. A tenth gene, atpZ, has been found in this operon, which is upstream of and overlapping with atpI. AtpI is a Ca2+/Mg2+ transporter.


The actual alignment was detected with superfamily member COG3312:

Pssm-ID: 480819  Cd Length: 124  Bit Score: 37.92  E-value: 2.88e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873902149  14 AKRVVLCQIVLAIGVVLYEVFFGNKVDMESSALGIVIAMLP-PLFGFIYASLKVRKNPNYSLRDLMQMSrVVKITYTFLM 92
Cdd:COG3312    7 ARKLLLLQLLVVLLVALLALVLWGPQAALSALLGGLIAVLPnAYFALRAFRYAGARAAKRVVRSFYRGE-ALKFLLTIVL 85

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 873902149  93 FILAFQFFKLDNPVILY-AYIFTMVGYFLTPFITASNRS 130
Cdd:COG3312   86 FALAFKLVKPLNPLPLFvGYLLVLVVQWLAPLLLNRKNK 124
 
Name Accession Description Interval E-value
AtpI COG3312
FoF1-type ATP synthase accessory protein AtpI [Energy production and conversion]; FoF1-type ...
 14-130 2.88e-04

FoF1-type ATP synthase accessory protein AtpI [Energy production and conversion]; FoF1-type ATP synthase accessory protein AtpI is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 442541  Cd Length: 124  Bit Score: 37.92  E-value: 2.88e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873902149  14 AKRVVLCQIVLAIGVVLYEVFFGNKVDMESSALGIVIAMLP-PLFGFIYASLKVRKNPNYSLRDLMQMSrVVKITYTFLM 92
Cdd:COG3312    7 ARKLLLLQLLVVLLVALLALVLWGPQAALSALLGGLIAVLPnAYFALRAFRYAGARAAKRVVRSFYRGE-ALKFLLTIVL 85

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 873902149  93 FILAFQFFKLDNPVILY-AYIFTMVGYFLTPFITASNRS 130
Cdd:COG3312   86 FALAFKLVKPLNPLPLFvGYLLVLVVQWLAPLLLNRKNK 124
 
Name Accession Description Interval E-value
AtpI COG3312
FoF1-type ATP synthase accessory protein AtpI [Energy production and conversion]; FoF1-type ...
 14-130 2.88e-04

FoF1-type ATP synthase accessory protein AtpI [Energy production and conversion]; FoF1-type ATP synthase accessory protein AtpI is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 442541  Cd Length: 124  Bit Score: 37.92  E-value: 2.88e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873902149  14 AKRVVLCQIVLAIGVVLYEVFFGNKVDMESSALGIVIAMLP-PLFGFIYASLKVRKNPNYSLRDLMQMSrVVKITYTFLM 92
Cdd:COG3312    7 ARKLLLLQLLVVLLVALLALVLWGPQAALSALLGGLIAVLPnAYFALRAFRYAGARAAKRVVRSFYRGE-ALKFLLTIVL 85

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 873902149  93 FILAFQFFKLDNPVILY-AYIFTMVGYFLTPFITASNRS 130
Cdd:COG3312   86 FALAFKLVKPLNPLPLFvGYLLVLVVQWLAPLLLNRKNK 124
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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