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Conserved domains on  [gi|873903065|ref|WP_048609433|]
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MULTISPECIES: TIGR02450 family Trp-rich protein [Vibrio]

Protein Classification

TIGR02450 family Trp-rich protein( domain architecture ID 10559974)

TIGR02450 family Trp-rich protein is a DUF2389 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2389 pfam09493
Tryptophan-rich protein (DUF2389); Members of this family are small hypothetical proteins of ...
 12-70 9.39e-21

Tryptophan-rich protein (DUF2389); Members of this family are small hypothetical proteins of 60 to 100 residues from Cyanobacteria and some Proteobacteria. Prochlorococcus marinus strains have two members, other species one only. Interestingly, of the eight most conserved residues, four are aromatic and three are invariant tryptophans. It appears all species that encode this protein can synthesize tryptophan de novo.


:

Pssm-ID: 462816  Cd Length: 61  Bit Score: 76.56  E-value: 9.39e-21
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 873903065  12 SKWTAVSPIKKEKHFMVTEV-EFEEGEVIRCLIEAVMTKR-EENINWRDLTDKDHWLPGWK 70
Cdd:pfam09493  1 SKWTAVTPTNGERHFLVTNVeEGGQGKVVFVELVAVCDKRvRFWINWRELKDRSLWLPGWK 61
 
Name Accession Description Interval E-value
DUF2389 pfam09493
Tryptophan-rich protein (DUF2389); Members of this family are small hypothetical proteins of ...
 12-70 9.39e-21

Tryptophan-rich protein (DUF2389); Members of this family are small hypothetical proteins of 60 to 100 residues from Cyanobacteria and some Proteobacteria. Prochlorococcus marinus strains have two members, other species one only. Interestingly, of the eight most conserved residues, four are aromatic and three are invariant tryptophans. It appears all species that encode this protein can synthesize tryptophan de novo.


Pssm-ID: 462816  Cd Length: 61  Bit Score: 76.56  E-value: 9.39e-21
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 873903065  12 SKWTAVSPIKKEKHFMVTEV-EFEEGEVIRCLIEAVMTKR-EENINWRDLTDKDHWLPGWK 70
Cdd:pfam09493  1 SKWTAVTPTNGERHFLVTNVeEGGQGKVVFVELVAVCDKRvRFWINWRELKDRSLWLPGWK 61
TIGR02450 TIGR02450
tryptophan-rich conserved hypothetical protein; Members of this family are small hypothetical ...
 10-70 2.94e-17

tryptophan-rich conserved hypothetical protein; Members of this family are small hypothetical proteins of 60 to 100 residues from Cyanobacteria and some Proteobacteria. Prochlorococcus marinus strains have two members, other species one only. Interestingly, of the eight most conserved residues, four are aromatic and three are invariant tryptophans. It appears all species that encode this protein can synthesize tryptophan de novo.


Pssm-ID: 131503  Cd Length: 61  Bit Score: 67.83  E-value: 2.94e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 873903065  10 LRSKWTAVSPIKKEKHFMVTEVEFEEGEVIRCLIEAVMTKREENINWRDLTDKDHWLPGWK 70
Cdd:TIGR02450  1 LGSKWTSATPINGERHFVVVNYGDEGGQVWVEMVSVVDVKISFRVNWQDLKDPDLWRPGWK 61
 
Name Accession Description Interval E-value
DUF2389 pfam09493
Tryptophan-rich protein (DUF2389); Members of this family are small hypothetical proteins of ...
 12-70 9.39e-21

Tryptophan-rich protein (DUF2389); Members of this family are small hypothetical proteins of 60 to 100 residues from Cyanobacteria and some Proteobacteria. Prochlorococcus marinus strains have two members, other species one only. Interestingly, of the eight most conserved residues, four are aromatic and three are invariant tryptophans. It appears all species that encode this protein can synthesize tryptophan de novo.


Pssm-ID: 462816  Cd Length: 61  Bit Score: 76.56  E-value: 9.39e-21
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 873903065  12 SKWTAVSPIKKEKHFMVTEV-EFEEGEVIRCLIEAVMTKR-EENINWRDLTDKDHWLPGWK 70
Cdd:pfam09493  1 SKWTAVTPTNGERHFLVTNVeEGGQGKVVFVELVAVCDKRvRFWINWRELKDRSLWLPGWK 61
TIGR02450 TIGR02450
tryptophan-rich conserved hypothetical protein; Members of this family are small hypothetical ...
 10-70 2.94e-17

tryptophan-rich conserved hypothetical protein; Members of this family are small hypothetical proteins of 60 to 100 residues from Cyanobacteria and some Proteobacteria. Prochlorococcus marinus strains have two members, other species one only. Interestingly, of the eight most conserved residues, four are aromatic and three are invariant tryptophans. It appears all species that encode this protein can synthesize tryptophan de novo.


Pssm-ID: 131503  Cd Length: 61  Bit Score: 67.83  E-value: 2.94e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 873903065  10 LRSKWTAVSPIKKEKHFMVTEVEFEEGEVIRCLIEAVMTKREENINWRDLTDKDHWLPGWK 70
Cdd:TIGR02450  1 LGSKWTSATPINGERHFVVVNYGDEGGQVWVEMVSVVDVKISFRVNWQDLKDPDLWRPGWK 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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