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Conserved domains on  [gi|873903939|ref|WP_048610272|]
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MULTISPECIES: choline ABC transporter permease subunit [Vibrio]

Protein Classification

choline ABC transporter permease subunit( domain architecture ID 10799159)

choline ABC transporter permease subunit may be involved in the transport of choline and is the transmembrane subunit (TM) found in a periplasmic binding protein(PBP)-dependent ATP-binding cassette (ABC) transporter

Gene Ontology:  GO:0140359|GO:0042626
PubMed:  25750732|24638992
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ABC_choXWV_perm TIGR03416
choline ABC transporter, permease protein;
6-272 1.71e-140

choline ABC transporter, permease protein;


:

Pssm-ID: 188318  Cd Length: 267  Bit Score: 395.95  E-value: 1.71e-140
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939    6 ENKIPVGQWMEAGVDWLTINAAGFFDAISIFLETVIMFLVDVFKWMPPALPIVMTAAIAWYLHRKPSLVIFVVAALLTIL 85
Cdd:TIGR03416   1 DHKIPIGAWAKSFVDWLTDNGAFFFDALAAVLESMIDGLLDLLQAPPPLLLIAIFAALAWWLQRSWSLALFVLLGLLLII 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939   86 NLGYWQEMLETFVLVFAATTISVLIGVPVGIMAAHRPWLYTVLRPILDLMQTVPTFVYLIPTLVLFGLGIVPGLISTIIF 165
Cdd:TIGR03416  81 NQGYWKETTETLALVLSATVVCMVIGVPLGIAAAHRPWLYAAMRPVLDLMQTLPTFVYLIPALVLFGLGMVPGLIATVIF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939  166 AIAAPIRLTYLGVTKVPEELIEAGKAFGASRMKLLLKVELPAALPSIMAGVTQCIMLSLSMVVIAALVGADGLGKPVVRA 245
Cdd:TIGR03416 161 AIPAPIRLTHLGISSVPQELVEAGEAFGATPSQLLWKVELPYALPQIMAGLTQTIMLSLSMVVIAALVGADGLGVPVVRA 240

                         250       260
                  ....*....|....*....|....*..
gi 873903939  246 LNTVNISQGFEAGLAIVLVAIILDRLC 272
Cdd:TIGR03416 241 LNTVNIALGFEAGLAIVVLAIVLDRMF 267
 
Name Accession Description Interval E-value
ABC_choXWV_perm TIGR03416
choline ABC transporter, permease protein;
6-272 1.71e-140

choline ABC transporter, permease protein;


Pssm-ID: 188318  Cd Length: 267  Bit Score: 395.95  E-value: 1.71e-140
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939    6 ENKIPVGQWMEAGVDWLTINAAGFFDAISIFLETVIMFLVDVFKWMPPALPIVMTAAIAWYLHRKPSLVIFVVAALLTIL 85
Cdd:TIGR03416   1 DHKIPIGAWAKSFVDWLTDNGAFFFDALAAVLESMIDGLLDLLQAPPPLLLIAIFAALAWWLQRSWSLALFVLLGLLLII 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939   86 NLGYWQEMLETFVLVFAATTISVLIGVPVGIMAAHRPWLYTVLRPILDLMQTVPTFVYLIPTLVLFGLGIVPGLISTIIF 165
Cdd:TIGR03416  81 NQGYWKETTETLALVLSATVVCMVIGVPLGIAAAHRPWLYAAMRPVLDLMQTLPTFVYLIPALVLFGLGMVPGLIATVIF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939  166 AIAAPIRLTYLGVTKVPEELIEAGKAFGASRMKLLLKVELPAALPSIMAGVTQCIMLSLSMVVIAALVGADGLGKPVVRA 245
Cdd:TIGR03416 161 AIPAPIRLTHLGISSVPQELVEAGEAFGATPSQLLWKVELPYALPQIMAGLTQTIMLSLSMVVIAALVGADGLGVPVVRA 240

                         250       260
                  ....*....|....*....|....*..
gi 873903939  246 LNTVNISQGFEAGLAIVLVAIILDRLC 272
Cdd:TIGR03416 241 LNTVNIALGFEAGLAIVVLAIVLDRMF 267
ProW COG4176
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 1-273 1.61e-131

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443335  Cd Length: 275  Bit Score: 373.66  E-value: 1.61e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939   1 MNFITENKIPVGQWMEAGVDWLTINAAGFFDAISIFLETVIMFLVDVFKWMPPALPIVMTAAIAWYLhRKPSLVIFVVAA 80
Cdd:COG4176    1 MDEPEDPKIPLGDWVDAAVDWLTDNFGGFFDAISDVLEGLLDGLEDLLLALPWWVVILLVAALAWRL-RGWRLALFTALG 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939  81 LLTILNLGYWQEMLETFVLVFAATTISVLIGVPVGIMAAHRPWLYTVLRPILDLMQTVPTFVYLIPTLVLFGLGIVPGLI 160
Cdd:COG4176   80 LLLIGNLGLWEEAMQTLALVLVAVLIALLIGIPLGILAARSDRVSRIVRPVLDFMQTMPAFVYLIPAVMLFGIGKVPGVI 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939 161 STIIFAIAAPIRLTYLGVTKVPEELIEAGKAFGASRMKLLLKVELPAALPSIMAGVTQCIMLSLSMVVIAALVGADGLGK 240
Cdd:COG4176  160 ATVIFALPPAIRLTNLGIRQVPKELVEAADAFGATPWQLLFKVQLPLALPTIMAGVNQTIMLALSMVVIASMIGAGGLGQ 239

                        250       260       270
                 ....*....|....*....|....*....|...
gi 873903939 241 PVVRALNTVNISQGFEAGLAIVLVAIILDRLCK 273
Cdd:COG4176  240 EVLRALQRLDIGLGFEAGLAIVILAIILDRITQ 272
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
9-271 1.75e-63

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 203.01  E-value: 1.75e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939   9 IPVGQWMEAGVDWLTINAAGFFDAISIFLETVIMFLVDVFKWMPPALPIVMTAAIAWYLHRKpSLVIFVVAALLTILNLG 88
Cdd:PRK10952  63 IPLDSWVTEGIDWVVTHFRPVFQGIRVPVDYILNGFQQLLLGMPAPVAIIVFALIAWQISGV-GMGVATLVSLIAIGAIG 141

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939  89 YWQEMLETFVLVFAATTISVLIGVPVGIMAAHRPWLYTVLRPILDLMQTVPTFVYLIPTLVLFGLGIVPGLISTIIFAIA 168
Cdd:PRK10952 142 AWSQAMVTLALVLTALLFCIVIGLPLGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALP 221

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939 169 APIRLTYLGVTKVPEELIEAGKAFGASRMKLLLKVELPAALPSIMAGVTQCIMLSLSMVVIAALVGADGLGKPVVRALNT 248
Cdd:PRK10952 222 PIVRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQMVLRGIGR 301

                        250       260
                 ....*....|....*....|...
gi 873903939 249 VNISQGFEAGLAIVLVAIILDRL 271
Cdd:PRK10952 302 LDMGLATVGGVGIVILAIILDRL 324
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 111-268 3.02e-15

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 71.95  E-value: 3.02e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939  111 GVPVGIMAA--HRPWLYTVLRPILDLMQTVPTFV-----YLIPTLVLFGLGIVPGLISTIIFAIAAPIRLTYLGVTKVPE 183
Cdd:pfam00528   1 GIPLGIIAAlrRGRRLDRLLRPLIDLLQALPSFVlaillVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939  184 ELIEAGKAFGASRMKLLLKVELPAALPSIMAGVTQCIMLSLSMVVIAALVGAD-GLGKPVVRALNTVNISQGFEAGLAIV 262
Cdd:pfam00528  81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWpGLGLLLIEAILGYDYPEIQGPVLAAA 160


                  ....*.
gi 873903939  263 LVAIIL 268
Cdd:pfam00528 161 LILLLL 166
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 93-268 1.01e-14

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 70.77  E-value: 1.01e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939  93 MLETFVLVFAATTISVLIGVPVGIMAA-HRPWLYTVLRPILDLMQTVPTFVYLIPTLVLFGL---------GIVPGLIST 162
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILArKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVllgwgilpgLGLPALILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939 163 IIFAIAAPIRLTYLGVTKVPEELIEAGKAFGASRMKLLLKVELPAALPSIMAGVTQCIMLSLSMVVIAALVGADGLGKPV 242
Cdd:cd06261   81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                        170       180
                 ....*....|....*....|....*.
gi 873903939 243 VRALNTVNISQGFEAGLAIVLVAIIL 268
Cdd:cd06261  161 TGLLLIFAILFPGDLGVAAAVALILL 186
 
Name Accession Description Interval E-value
ABC_choXWV_perm TIGR03416
choline ABC transporter, permease protein;
6-272 1.71e-140

choline ABC transporter, permease protein;


Pssm-ID: 188318  Cd Length: 267  Bit Score: 395.95  E-value: 1.71e-140
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939    6 ENKIPVGQWMEAGVDWLTINAAGFFDAISIFLETVIMFLVDVFKWMPPALPIVMTAAIAWYLHRKPSLVIFVVAALLTIL 85
Cdd:TIGR03416   1 DHKIPIGAWAKSFVDWLTDNGAFFFDALAAVLESMIDGLLDLLQAPPPLLLIAIFAALAWWLQRSWSLALFVLLGLLLII 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939   86 NLGYWQEMLETFVLVFAATTISVLIGVPVGIMAAHRPWLYTVLRPILDLMQTVPTFVYLIPTLVLFGLGIVPGLISTIIF 165
Cdd:TIGR03416  81 NQGYWKETTETLALVLSATVVCMVIGVPLGIAAAHRPWLYAAMRPVLDLMQTLPTFVYLIPALVLFGLGMVPGLIATVIF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939  166 AIAAPIRLTYLGVTKVPEELIEAGKAFGASRMKLLLKVELPAALPSIMAGVTQCIMLSLSMVVIAALVGADGLGKPVVRA 245
Cdd:TIGR03416 161 AIPAPIRLTHLGISSVPQELVEAGEAFGATPSQLLWKVELPYALPQIMAGLTQTIMLSLSMVVIAALVGADGLGVPVVRA 240

                         250       260
                  ....*....|....*....|....*..
gi 873903939  246 LNTVNISQGFEAGLAIVLVAIILDRLC 272
Cdd:TIGR03416 241 LNTVNIALGFEAGLAIVVLAIVLDRMF 267
ProW COG4176
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 1-273 1.61e-131

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443335  Cd Length: 275  Bit Score: 373.66  E-value: 1.61e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939   1 MNFITENKIPVGQWMEAGVDWLTINAAGFFDAISIFLETVIMFLVDVFKWMPPALPIVMTAAIAWYLhRKPSLVIFVVAA 80
Cdd:COG4176    1 MDEPEDPKIPLGDWVDAAVDWLTDNFGGFFDAISDVLEGLLDGLEDLLLALPWWVVILLVAALAWRL-RGWRLALFTALG 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939  81 LLTILNLGYWQEMLETFVLVFAATTISVLIGVPVGIMAAHRPWLYTVLRPILDLMQTVPTFVYLIPTLVLFGLGIVPGLI 160
Cdd:COG4176   80 LLLIGNLGLWEEAMQTLALVLVAVLIALLIGIPLGILAARSDRVSRIVRPVLDFMQTMPAFVYLIPAVMLFGIGKVPGVI 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939 161 STIIFAIAAPIRLTYLGVTKVPEELIEAGKAFGASRMKLLLKVELPAALPSIMAGVTQCIMLSLSMVVIAALVGADGLGK 240
Cdd:COG4176  160 ATVIFALPPAIRLTNLGIRQVPKELVEAADAFGATPWQLLFKVQLPLALPTIMAGVNQTIMLALSMVVIASMIGAGGLGQ 239

                        250       260       270
                 ....*....|....*....|....*....|...
gi 873903939 241 PVVRALNTVNISQGFEAGLAIVLVAIILDRLCK 273
Cdd:COG4176  240 EVLRALQRLDIGLGFEAGLAIVILAIILDRITQ 272
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
9-271 1.75e-63

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 203.01  E-value: 1.75e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939   9 IPVGQWMEAGVDWLTINAAGFFDAISIFLETVIMFLVDVFKWMPPALPIVMTAAIAWYLHRKpSLVIFVVAALLTILNLG 88
Cdd:PRK10952  63 IPLDSWVTEGIDWVVTHFRPVFQGIRVPVDYILNGFQQLLLGMPAPVAIIVFALIAWQISGV-GMGVATLVSLIAIGAIG 141

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939  89 YWQEMLETFVLVFAATTISVLIGVPVGIMAAHRPWLYTVLRPILDLMQTVPTFVYLIPTLVLFGLGIVPGLISTIIFAIA 168
Cdd:PRK10952 142 AWSQAMVTLALVLTALLFCIVIGLPLGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALP 221

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939 169 APIRLTYLGVTKVPEELIEAGKAFGASRMKLLLKVELPAALPSIMAGVTQCIMLSLSMVVIAALVGADGLGKPVVRALNT 248
Cdd:PRK10952 222 PIVRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQMVLRGIGR 301

                        250       260
                 ....*....|....*....|...
gi 873903939 249 VNISQGFEAGLAIVLVAIILDRL 271
Cdd:PRK10952 302 LDMGLATVGGVGIVILAIILDRL 324
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 88-271 3.59e-36

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 128.25  E-value: 3.59e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939  88 GYWQEMLETFVLVFAATTISVLIGVPVGIMAAHRPWLYTVLRPILDLMQTVPTFVYLIPTLVLFGLGIVPGLISTIIFAI 167
Cdd:COG1174   15 GILALLLEHLLLVLLALLIALLIAVPLGILITRRRRLAGLVLGVANILQTIPSLALLALLIPLLGIGPAPAIIALVLYAL 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939 168 AAPIRLTYLGVTKVPEELIEAGKAFGASRMKLLLKVELPAALPSIMAGVTQCIMLSLSMVVIAALVGADGLGKPVVRALN 247
Cdd:COG1174   95 LPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAGIRTAAVQNIGTATLAALIGAGGLGDLIFDGLQ 174

                        170       180
                 ....*....|....*....|....
gi 873903939 248 TVNISQGFEAGLAIVLVAIILDRL 271
Cdd:COG1174  175 LNNTALILAGAILVALLALLVDLL 198
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 77-271 9.79e-27

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 104.46  E-value: 9.79e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939  77 VVAALLTILNLG-YWQEMLETFVLVFAATTISVLIGVPVGIMAAHRPWLYTVLRPILDLMQTVPTFVYLIPTLVLFGLGI 155
Cdd:COG0600   46 VLAALVELLASGeLWEHLLASLLRVLLGFALAALLGVPLGLLLGLSRLLRRLLDPLLVFLRPIPPLALAPLLILWFGIGE 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939 156 VPGLISTIIFAIAAPIRLTYLGVTKVPEELIEAGKAFGASRMKLLLKVELPAALPSIMAGVTQCIMLSLSMVVIAALVGA 235
Cdd:COG0600  126 ASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIALGLAWIGLVVAELLGA 205

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 873903939 236 -DGLGKPVVRALNTVNISQGFEAGLAIVLVAIILDRL 271
Cdd:COG0600  206 sSGLGYLILDARQLLDTDLVFAAILVIGLLGLLLDLL 242
PhnE TIGR01097
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ...
 89-271 1.25e-17

phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]


Pssm-ID: 273441 [Multi-domain]  Cd Length: 250  Bit Score: 79.89  E-value: 1.25e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939   89 YWQEMLETFVLVFAATTISVLIGVPVGIMAAHR----PWLYTVLRPILDLMQTVPTFVYLIPTLVLFGLGIVPGLISTII 164
Cdd:TIGR01097  56 ILKALLETLAMAILGTVLAAVLAVPLALLAARNitpsPWLYGLARLLLNFLRAIPELVWALIFVAAVGLGPFAGVLALAF 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939  165 FAIAAPIRLTYLGVTKVPEELIEAGKAFGASRMKLLLKVELPAALPSIMAGVTQCIMLSLSMVVIAALVGADGLGKPVVR 244
Cdd:TIGR01097 136 HTVGFLGKLFAEAIEEVDPGPVEALRATGASKLQVIRYGVLPQVLPQFLSYTLYRFEINVRAAAVLGLVGAGGIGLELDT 215

                         170       180
                  ....*....|....*....|....*..
gi 873903939  245 ALNTVNISQGFEAGLAIVLVAIILDRL 271
Cdd:TIGR01097 216 AIGLFDYDEVSAIILVILVVVVIIDLI 242
PhnE COG3639
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ...
 89-271 5.21e-16

ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 442856 [Multi-domain]  Cd Length: 244  Bit Score: 75.50  E-value: 5.21e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939  89 YWQEMLETFVLVFAATTISVLIGVPVGIMAAHR----PWLYTVLRPILDLMQTVPTFVYLIPTLVLFGLGIVPGLISTII 164
Cdd:COG3639   49 LLSALLETLAIALLGTLLGAVLALPLAFLAARNlapnPWVRLLARRLLNVLRAIPELVWALIFVAAVGLGPFAGVLALAI 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939 165 FAIAAPIRLTYLGVTKVPEELIEAGKAFGASRMKLLLKVELPAALPSIMAGVTQCIMLSLSMVVIAALVGADGLGKPVVR 244
Cdd:COG3639  129 HTIGFLGKLFAEAIEEIDPGPVEALRATGASRLQVIRYGVLPQVLPQFLSYTLYRFEINIRAATVLGLVGAGGIGLLLNE 208

                        170       180
                 ....*....|....*....|....*..
gi 873903939 245 ALNTVNISQGFEAGLAIVLVAIILDRL 271
Cdd:COG3639  209 AIRLFQYDEVAAILLVILVLVLLIDLL 235
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 111-268 3.02e-15

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 71.95  E-value: 3.02e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939  111 GVPVGIMAA--HRPWLYTVLRPILDLMQTVPTFV-----YLIPTLVLFGLGIVPGLISTIIFAIAAPIRLTYLGVTKVPE 183
Cdd:pfam00528   1 GIPLGIIAAlrRGRRLDRLLRPLIDLLQALPSFVlaillVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939  184 ELIEAGKAFGASRMKLLLKVELPAALPSIMAGVTQCIMLSLSMVVIAALVGAD-GLGKPVVRALNTVNISQGFEAGLAIV 262
Cdd:pfam00528  81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWpGLGLLLIEAILGYDYPEIQGPVLAAA 160


                  ....*.
gi 873903939  263 LVAIIL 268
Cdd:pfam00528 161 LILLLL 166
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 90-239 5.45e-15

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 72.01  E-value: 5.45e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939  90 WQEMLETFVLVFAATTISVLIGVPVGIMA--------AHRPWLYTVLRPILDLMQTVPtF----VYLIP-TLVLFG--LG 154
Cdd:COG2011   13 LQATGETLYMVGVSTLIAVLLGLPLGVLLvltrpgglLPNPVLYRVLGVIVNIFRSIP-FiillVALIPlTRLIVGtsIG 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939 155 IVPGLISTIIFAIAAPIRLTYLGVTKVPEELIEAGKAFGASRMKLLLKVELPAALPSIMAGVTQCIMLSLSMVVIAALVG 234
Cdd:COG2011   92 TTAAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTLISLIGYSAMAGAVG 171


                 ....*
gi 873903939 235 ADGLG 239
Cdd:COG2011  172 GGGLG 176
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 93-268 1.01e-14

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 70.77  E-value: 1.01e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939  93 MLETFVLVFAATTISVLIGVPVGIMAA-HRPWLYTVLRPILDLMQTVPTFVYLIPTLVLFGL---------GIVPGLIST 162
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILArKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVllgwgilpgLGLPALILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939 163 IIFAIAAPIRLTYLGVTKVPEELIEAGKAFGASRMKLLLKVELPAALPSIMAGVTQCIMLSLSMVVIAALVGADGLGKPV 242
Cdd:cd06261   81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                        170       180
                 ....*....|....*....|....*.
gi 873903939 243 VRALNTVNISQGFEAGLAIVLVAIIL 268
Cdd:cd06261  161 TGLLLIFAILFPGDLGVAAAVALILL 186
PRK10160 PRK10160
taurine ABC transporter permease TauC;
90-239 3.45e-14

taurine ABC transporter permease TauC;


Pssm-ID: 182276  Cd Length: 275  Bit Score: 70.97  E-value: 3.45e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939  90 WQEMLETFVLVFAATTISVLIGVPVGIMAAHRPWLYTVLRPILDLMQTVPTFVYLIPTLVLFGLGIVPGlISTIIFAIAA 169
Cdd:PRK10160  77 WQHLAASLTRIVLALLAAVVIGIPVGIAMGLSPTVRGILDPLIELYRPVPPLAYLPLMVIWFGIGETSK-ILLIYLAIFA 155

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 873903939 170 PIRLTYL-GVTKVPEELIEAGKAFGASRMKLLLKVELPAALPSIMAGVTQCIMLSLSMVVIAALVGAD-GLG 239
Cdd:PRK10160 156 PVAMSALaGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAELIAATrGLG 227
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 96-234 1.62e-10

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 60.13  E-value: 1.62e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939  96 TFVLVFAATTISVLIGVPVGI-MAAHRPWLYTVLRPILDLMQTVPTFVYLIPTLVLFG-LGIVPGLISTII----FAIAA 169
Cdd:COG1177   66 SLLIALLSTLLATVLGTPAALaLARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSaLGLSGGLWGLILahvvFTLPF 145

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 873903939 170 PIRLTYLGVTKVPEELIEAGKAFGASRMKLLLKVELPAALPSIMAGVTQCIMLSLSMVVIAALVG 234
Cdd:COG1177  146 VVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLA 210
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 89-268 1.80e-09

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 57.08  E-value: 1.80e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939  89 YWQEMLETFVLVFAATTISVLIGVPVGIMAAHRPwlyTVLRPILDLMQTVPTFV-YLIPT---LVLFGLGivpGLISTII 164
Cdd:COG1176   65 YLKVLLRTLWIALLTTLICLLLGYPIAYFLARAP---PRWRNLLLLLVILPFWTsFLVRTyawIVLLGRN---GLLNSLL 138

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939 165 FA---IAAPIRLT----------------------YLGVTKVPEELIEAGKAFGASRMKLLLKVELPAALPSIMAGVTQC 219
Cdd:COG1176  139 LAlglIDEPLRLLytefavviglvyvylpfmvlplYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLV 218

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 873903939 220 IMLSLSMVVIAALVGAdglGKPVV-------RALNTVNISQGfeAGLAIVLVAIIL 268
Cdd:COG1176  219 FIPALGAFVTPALLGG---GKVLMignliyqQFLSALNWPLA--AALAVVLLLIVL 269
COG4986 COG4986
ABC-type anion transport system, duplicated permease component [Inorganic ion transport and ...
 49-215 8.16e-09

ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism];


Pssm-ID: 444010 [Multi-domain]  Cd Length: 576  Bit Score: 56.00  E-value: 8.16e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939  49 KWMPPALPIVMTAAIAWylhrkpsLVIFVVAALLTILNLGYWQE----MLETFVLVFAATTISVLIGVPVGIMAAHRPWL 124
Cdd:COG4986  330 RWLDRLWLALLALLVLY-------GLWRLLLFLLTEVGLSEVLHvfllGLLTLLRVVVLIALASLIWVPVGVWIGLRPRL 402

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939 125 YTVLRPILDLMQTVP-TFVYLIPTLVLFGLGIVPGLIST----------IIFAIAApirltylGVTKVPEELIEAGKAFG 193
Cdd:COG4986  403 ARRLQPVAQFLASFPaNLLFPVAVLLIVRFGLNPNIWLSplmilgtqwyILFNVIA-------GASAIPNDLREAARNFG 475

                        170       180
                 ....*....|....*....|..
gi 873903939 194 ASRMKLLLKVELPAALPSIMAG 215
Cdd:COG4986  476 LRGWLWWRRLILPGIFPYYVTG 497
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
80-240 1.30e-07

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 50.89  E-value: 1.30e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939  80 ALLTILNLGYWqemlETFVLVFAATTISVLIGVPVGIMA-AHRPW-------LYTVLRPILDLMQTVP---TFVYLIP-T 147
Cdd:PRK10782   4 AMMWLLVRGVW----ETLAMTFVSGFFGFVIGLPVGVLLyVTRPGqiianakLYRTLSALVNIFRSIPfiiLLVWMIPfT 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939 148 LVLFG--LGIVPGLISTIIFAIAAPIRLTYLGVTKVPEELIEAGKAFGASRMKLLLKVELPAALPSIMAGVTQCIMLSLS 225
Cdd:PRK10782  80 RVIVGtsIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVG 159

                        170
                 ....*....|....*
gi 873903939 226 MVVIAALVGADGLGK 240
Cdd:PRK10782 160 YSAMGGAVGAGGLGQ 174
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 101-216 7.33e-07

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 49.57  E-value: 7.33e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939  101 FAATTISVLIGVPVGIMAA------HRPWLYTVLRPILDLMQTVPTFVY-------LIPTLV---------------LFG 152
Cdd:TIGR02138  69 LITSLIALLIAVPVGIGIAiflseiAPKRVRSVLKPVVELLAGIPSVVYgfwglfvLVPFLKphfqpflgsnlglipLFG 148

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 873903939  153 LGIVPGLISTIIFAIAAPIRLTYLGVTKVPEELIEAGKAFGASRMKLLLKVELPAALPSIMAGV 216
Cdd:TIGR02138 149 GPILTAGIVLAIMILPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAV 212
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
84-215 1.20e-06

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 49.39  E-value: 1.20e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939  84 ILNLGYWQEMLETFVLVFAATTISVLIGVPVGIMAAHRP-WLYTVLRPILDLMQTVPTFV----YLIPTLVLFGLGIVPG 158
Cdd:COG1178  331 LLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRgRLARLLDRLAMLPYAVPGIVlglgLLLLFNRPLPLLLYGT 410

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 873903939 159 L----ISTIIFAIAAPIRLTYLGVTKVPEELIEAGKAFGASRMKLLLKVELPAALPSIMAG 215
Cdd:COG1178  411 LailvLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAA 471
ssuC PRK11365
aliphatic sulfonate ABC transporter permease SsuC;
77-268 1.74e-06

aliphatic sulfonate ABC transporter permease SsuC;


Pssm-ID: 183100  Cd Length: 263  Bit Score: 48.01  E-value: 1.74e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939  77 VVAALLTILNLG-YWQEMLETFVLVFAATTISVLIGVPVGIMAAHRPWLYTVLRPILDLMQTVPTFVyLIPtLVLFGLGI 155
Cdd:PRK11365  45 VVTAFWTLSASGeLWQHLAISSWRALIGFSIGGSLGLILGLISGLSRWGERLLDTSIQMLRNVPHLA-LIP-LVILWFGI 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939 156 VPgliSTIIFAIAA----PIRL-TYLGVTKVPEELIEAGKAFGASRMKLLLKVELPAALPSIMAGVTQCI-MLSLSMVVI 229
Cdd:PRK11365 123 DE---SAKIFLVALgtlfPIYInTWHGIRNIDRGLVEMARSYGLSGIPLFIHVILPGALPSIMVGVRFALgLMWLTLIVA 199

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 873903939 230 AALVGADGLGkpvVRALNTVNISQgfeagLAIVLVAIIL 268
Cdd:PRK11365 200 ETISANSGIG---YLAMNAREFLQ-----TDVVVVAIIL 230
pstA PRK11268
phosphate ABC transporter permease PstA;
96-216 3.83e-06

phosphate ABC transporter permease PstA;


Pssm-ID: 183065 [Multi-domain]  Cd Length: 295  Bit Score: 47.37  E-value: 3.83e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939  96 TFVLVFAATtisvLIGVPVGIMAA-------HRPWLYTVLRPILDLMQTVPT-----FVYLIPTLVLFGLGIVPGLISTI 163
Cdd:PRK11268  86 SGLLILWAT----VVGTPLGIMAGiylaeygRKSWLAEVIRFINDILLSAPSivvglFVYTIVVAQMEHFSGWAGVIALA 161

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 873903939 164 IFAIAAPIRLTYLGVTKVPEELIEAGKAFGASRMKLLLKVELPAALPSIMAGV 216
Cdd:PRK11268 162 LLQIPIVIRTTENMLKLVPDSLREAAYALGTPKWKMISAITLKASVSGIMTGV 214
COG4986 COG4986
ABC-type anion transport system, duplicated permease component [Inorganic ion transport and ...
 94-271 3.17e-05

ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism];


Pssm-ID: 444010 [Multi-domain]  Cd Length: 576  Bit Score: 44.83  E-value: 3.17e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939  94 LETFVLVFAATTISVLIGVPVGIMAAHRPWLYTVLRPILDLMQTVPTFVYLiPTLVLFGLGIVP----GLISTIIFAIAa 169
Cdd:COG4986   64 LRTTLRMFAALAASLLFTFVYATLAAKSRRAEKILIPLLDILQSVPVLGFL-SFTVTFFIALFPgsllGVELAAIFAIF- 141

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939 170 pirlT----------YLGVTKVPEELIEAGKAFGASRMKLLLKVELPAALPSI-------MAG----VTQCIMLSLSMVV 228
Cdd:COG4986  142 ----TsqawnmafsfYQSLRTVPRDLDEAARIFRLSGWQRFWRLELPFAMPGLvwnsmmsMSGgwffLVASEAISVGNQD 217

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 873903939 229 IAalvgADGLGKPVVRALNTVNISQGFEAGLAIVLVAIILDRL 271
Cdd:COG4986  218 IR----LPGIGSYLALAIAQGDLGAIGWAILAMLVVILLYDQL 256
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
73-234 4.48e-05

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 44.38  E-value: 4.48e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939  73 LVIFVVAALLTIL------NLGYWQEMLE----------TFVLVFAATTISVLIGVPVG-IMAAHRPWLYTVLRPILDLM 135
Cdd:COG1178   20 LALLVLLPLLALLlraftdGLANFWALLSdpylwralgnTLLLALLVTLLSLLLGVPLAwLLARTDFPGRRLLRWLLLLP 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939 136 QTVPTFVY------------LIPTLVLFGLGIVPGLIST---IIFAIA---API--RLTYLGVTKVPEELIEAGKAFGAS 195
Cdd:COG1178  100 LALPPYVValawialfgpngLLNTLLRALFGLEPPDIYGlggIILVLVlfnYPYvyLLLRAALRSIDASLEEAARSLGAS 179

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 873903939 196 RMKLLLKVELPAALPSIMAGVTQCIMLSLSMVVIAALVG 234
Cdd:COG1178  180 PWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLG 218
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 86-214 2.20e-04

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 42.00  E-value: 2.20e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939  86 NLGYWQEMLETFVLVFAATTISVLIGVPVG-IMAAHRPWLYTVLRPILDLMQTVPTFVYLIPTLVLF-GLG--------I 155
Cdd:COG0395   69 DGPFGRYLLNSLIVAVVSTVLSLLLSSLAAyALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFrQLGllntywglI 148

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 873903939 156 VPGLISTIIFAIaapirltYLGVT---KVPEELIEAGKAFGASRMKLLLKVELPAALPSIMA 214
Cdd:COG0395  149 LPYLAFGLPFGI-------FLLRQffrSIPRELEEAARIDGASEFRIFWRIVLPLSKPALAT 203
PRK09881 PRK09881
D,D-dipeptide ABC transporter permease;
88-239 9.86e-04

D,D-dipeptide ABC transporter permease;


Pssm-ID: 182131 [Multi-domain]  Cd Length: 296  Bit Score: 39.80  E-value: 9.86e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939  88 GYWQEMLETFVLVFAATTISVLIGVPVGIMAAHrpwLYTVLRPILDLMQTVPTFVYLIPTLVLFGLGIVPGLISTIIFAI 167
Cdd:PRK09881  92 GSQQSILAGLVVVAIAGMIGSLLGCLSGVLGGR---ADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAMLAIAIVRI 168

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 873903939 168 AAPIRLTYlGVTKVPEE--LIEAGKAFGASRMKLLLKVELPAALPSImagVTQCIMLSLSMVVIAALVGADGLG 239
Cdd:PRK09881 169 PFYVRLAR-GQALVVRQytYVQAAKTFGASRWHLISWHILRNSLPPL---IVQASLDIGSAILMAATLGFIGLG 238
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 179-238 1.47e-03

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 39.22  E-value: 1.47e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939 179 TKVPEELIEAGKAFGASRMKLLLKVELPAALPSIMAGVTQCIMLSLSMVVIAALVGADGL 238
Cdd:PRK15050 185 AQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIVLFTGAKDV 244
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 96-157 1.49e-03

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 39.28  E-value: 1.49e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 873903939  96 TFVLVFAATTISVLIGVPVGIMAAHRP--WLYTVLRPILDLMQTVPTFVYLIPTLVLFG--LGIVP 157
Cdd:COG0601   98 TLELALLALLLALLIGIPLGILAALRRgsWLDRLITVLALLGISIPSFWLGLLLILLFAvkLGWLP 163
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 91-233 4.96e-03

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 37.66  E-value: 4.96e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 873903939  91 QEMLETFVLVFAATTISVLIGVpVGIMAAHRpwlY-----TVLRPILDLMQTVPTFVYLIPTLVLF-----GLGIVPGLI 160
Cdd:PRK09500  57 QAAQHSLTMAVFSATFATLIGS-LTAVALYR---YrfrgkKFVSGMLFVVMMSPDIVMAISLLVLFmllgiQLGFWSLLF 132

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 873903939 161 STIIFAIAAPIRLTYLGVTKVPEELIEAGKAFGASRMKLLLKVELPAALPSIMAGVTQCIMLSLSMVVIAALV 233
Cdd:PRK09500 133 AHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLLSFTLSLDDVVVSSFV 205
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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