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Conserved domains on  [gi|873904663|ref|WP_048610996|]
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MULTISPECIES: twin-arginine translocation signal domain-containing protein [Vibrio]

Protein Classification

formate_TAT family protein( domain architecture ID 10021517)

formate_TAT family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
formate_TAT TIGR02811
formate dehydrogenase region TAT target; Members of this uncharacterized protein family are ...
 1-66 5.43e-17

formate dehydrogenase region TAT target; Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein. [Unknown function, General]


:

Pssm-ID: 274310  Cd Length: 66  Bit Score: 67.17  E-value: 5.43e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 873904663   1 MKDNKEINSSRRDLLKGLTTAAVAGAVVAGTTKVATASETVEMPKEDMKKTGYRETQHIRDYYDTL 66
Cdd:TIGR02811  1 MSDDQKADPSRRDLLKGLGVGAAAGAVAAATGRVASASVDSEPSEPEKKKKGYRETQHIRDYYRTL 66
 
Name Accession Description Interval E-value
formate_TAT TIGR02811
formate dehydrogenase region TAT target; Members of this uncharacterized protein family are ...
 1-66 5.43e-17

formate dehydrogenase region TAT target; Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein. [Unknown function, General]


Pssm-ID: 274310  Cd Length: 66  Bit Score: 67.17  E-value: 5.43e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 873904663   1 MKDNKEINSSRRDLLKGLTTAAVAGAVVAGTTKVATASETVEMPKEDMKKTGYRETQHIRDYYDTL 66
Cdd:TIGR02811  1 MSDDQKADPSRRDLLKGLGVGAAAGAVAAATGRVASASVDSEPSEPEKKKKGYRETQHIRDYYRTL 66
 
Name Accession Description Interval E-value
formate_TAT TIGR02811
formate dehydrogenase region TAT target; Members of this uncharacterized protein family are ...
 1-66 5.43e-17

formate dehydrogenase region TAT target; Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein. [Unknown function, General]


Pssm-ID: 274310  Cd Length: 66  Bit Score: 67.17  E-value: 5.43e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 873904663   1 MKDNKEINSSRRDLLKGLTTAAVAGAVVAGTTKVATASETVEMPKEDMKKTGYRETQHIRDYYDTL 66
Cdd:TIGR02811  1 MSDDQKADPSRRDLLKGLGVGAAAGAVAAATGRVASASVDSEPSEPEKKKKGYRETQHIRDYYRTL 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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