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Conserved domains on  [gi|880806186|ref|WP_048658364|]
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BLUF domain-containing protein [Vibrio crassostreae]

Protein Classification

BLUF domain-containing protein( domain architecture ID 10522878)

BLUF domain-containing protein similar to Rhodobacter sphaeroides transcriptional antirepressor AppA that senses both the light climate and the intracellular redox state

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BLUF pfam04940
Sensors of blue-light using FAD; The BLUF domain has been shown to bind FAD in the AppA ...
 6-94 1.66e-36

Sensors of blue-light using FAD; The BLUF domain has been shown to bind FAD in the AppA protein. AppA is involved in the repression of photosynthesis genes in response to blue-light.


:

Pssm-ID: 461495  Cd Length: 89  Bit Score: 120.30  E-value: 1.66e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880806186    6 LIYVSTLCESCDSKALDEIFKISHDRNKQSHLTGLLSHNDKYFLQCIEGSRTAVNHTYNHILNDKRHKKVMILYFKEIDC 85
Cdd:pfam04940   1 LIYVSRAAADLSEEDLADILEQSRRNNARLGITGVLLYDGGRFLQVLEGPEEAVDALYERIKRDPRHTDVTVLEEGPIEE 80


                  ....*....
gi 880806186   86 REFGDWSMG 94
Cdd:pfam04940  81 RRFPDWSMG 89
 
Name Accession Description Interval E-value
BLUF pfam04940
Sensors of blue-light using FAD; The BLUF domain has been shown to bind FAD in the AppA ...
 6-94 1.66e-36

Sensors of blue-light using FAD; The BLUF domain has been shown to bind FAD in the AppA protein. AppA is involved in the repression of photosynthesis genes in response to blue-light.


Pssm-ID: 461495  Cd Length: 89  Bit Score: 120.30  E-value: 1.66e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880806186    6 LIYVSTLCESCDSKALDEIFKISHDRNKQSHLTGLLSHNDKYFLQCIEGSRTAVNHTYNHILNDKRHKKVMILYFKEIDC 85
Cdd:pfam04940   1 LIYVSRAAADLSEEDLADILEQSRRNNARLGITGVLLYDGGRFLQVLEGPEEAVDALYERIKRDPRHTDVTVLEEGPIEE 80


                  ....*....
gi 880806186   86 REFGDWSMG 94
Cdd:pfam04940  81 RRFPDWSMG 89
BLUF smart01034
Sensors of blue-light using FAD; The BLUF domain has been shown to bind FAD in the AppA ...
 3-94 4.30e-35

Sensors of blue-light using FAD; The BLUF domain has been shown to bind FAD in the AppA protein. AppA is involved in the repression of photosynthesis genes in response to blue-light.


Pssm-ID: 198102  Cd Length: 92  Bit Score: 116.90  E-value: 4.30e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880806186     3 LTRLIYVSTLCESCDSKALDEIFKISHDRNKQSHLTGLLSHNDKYFLQCIEGSRTAVNHTYNHILNDKRHKKVMILYFKE 82
Cdd:smart01034   1 LHRLVYVSRARPDLSPEDLEDILAQARRNNARLGITGVLLYNGGHFLQVLEGPEEAVEALYERIQRDPRHRDVQVLLYEP 80

                           90
                   ....*....|..
gi 880806186    83 IDCREFGDWSMG 94
Cdd:smart01034  81 IPERRFPDWSMG 92
 
Name Accession Description Interval E-value
BLUF pfam04940
Sensors of blue-light using FAD; The BLUF domain has been shown to bind FAD in the AppA ...
 6-94 1.66e-36

Sensors of blue-light using FAD; The BLUF domain has been shown to bind FAD in the AppA protein. AppA is involved in the repression of photosynthesis genes in response to blue-light.


Pssm-ID: 461495  Cd Length: 89  Bit Score: 120.30  E-value: 1.66e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880806186    6 LIYVSTLCESCDSKALDEIFKISHDRNKQSHLTGLLSHNDKYFLQCIEGSRTAVNHTYNHILNDKRHKKVMILYFKEIDC 85
Cdd:pfam04940   1 LIYVSRAAADLSEEDLADILEQSRRNNARLGITGVLLYDGGRFLQVLEGPEEAVDALYERIKRDPRHTDVTVLEEGPIEE 80


                  ....*....
gi 880806186   86 REFGDWSMG 94
Cdd:pfam04940  81 RRFPDWSMG 89
BLUF smart01034
Sensors of blue-light using FAD; The BLUF domain has been shown to bind FAD in the AppA ...
 3-94 4.30e-35

Sensors of blue-light using FAD; The BLUF domain has been shown to bind FAD in the AppA protein. AppA is involved in the repression of photosynthesis genes in response to blue-light.


Pssm-ID: 198102  Cd Length: 92  Bit Score: 116.90  E-value: 4.30e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880806186     3 LTRLIYVSTLCESCDSKALDEIFKISHDRNKQSHLTGLLSHNDKYFLQCIEGSRTAVNHTYNHILNDKRHKKVMILYFKE 82
Cdd:smart01034   1 LHRLVYVSRARPDLSPEDLEDILAQARRNNARLGITGVLLYNGGHFLQVLEGPEEAVEALYERIQRDPRHRDVQVLLYEP 80

                           90
                   ....*....|..
gi 880806186    83 IDCREFGDWSMG 94
Cdd:smart01034  81 IPERRFPDWSMG 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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