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Conserved domains on  [gi|880806419|ref|WP_048658597|]
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OmpA family protein [Vibrio crassostreae]

Protein Classification

OmpA family protein( domain architecture ID 10163224)

OmpA family membrane protein acts as a porin with low permeability that allows slow penetration of small solutes; may function in peptidoglycan binding

CATH:  3.30.1330.60
Gene Ontology:  GO:0016020|GO:0009279|GO:0015288|GO:0042834
PubMed:  17559395

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 100-201 4.05e-38

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


:

Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 127.67  E-value: 4.05e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880806419 100 RLHFGFDQHNLTPMGSKALSQLAGELKTN-GSSITVDGHTDSTGEEGYNQALGLQRALTTSDGLIADGVEKNRLVIRSFG 178
Cdd:cd07185    3 TIYFDFGSAELTPEAKPLLDKLAEVLKKNpDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYG 82

                         90       100
                 ....*....|....*....|...
gi 880806419 179 ESEPIASNSTAEGRAKNRRSEIW 201
Cdd:cd07185   83 ESRPIASNDTEEGRAKNRRVEIV 105
 
Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 100-201 4.05e-38

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 127.67  E-value: 4.05e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880806419 100 RLHFGFDQHNLTPMGSKALSQLAGELKTN-GSSITVDGHTDSTGEEGYNQALGLQRALTTSDGLIADGVEKNRLVIRSFG 178
Cdd:cd07185    3 TIYFDFGSAELTPEAKPLLDKLAEVLKKNpDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYG 82

                         90       100
                 ....*....|....*....|...
gi 880806419 179 ESEPIASNSTAEGRAKNRRSEIW 201
Cdd:cd07185   83 ESRPIASNDTEEGRAKNRRVEIV 105
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 97-201 1.46e-36

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 129.52  E-value: 1.46e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880806419  97 LLARLHFGFDQHNLTPMGSKALSQLAGELKTNGS-SITVDGHTDSTGEEGYNQALGLQRALTTSDGLIADGVEKNRLVIR 175
Cdd:COG2885  185 LLSNVYFDFDSAELTPEAKAALDELAALLKENPDlRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLVSKGIPASRITAV 264

                         90       100
                 ....*....|....*....|....*.
gi 880806419 176 SFGESEPIASNSTAEGRAKNRRSEIW 201
Cdd:COG2885  265 GYGESRPVASNDTEEGRAKNRRVEIV 290
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 100-200 3.58e-23

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 89.16  E-value: 3.58e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880806419  100 RLHFGFDQHNLTPMGSKALSQLAGELKTNGS-SITVDGHTDSTGEEGYNQALGLQRALTTSDGLIADGVEKNRLVIRSFG 178
Cdd:TIGR02802   1 RVYFDFDSSDLKSEAQATLDAHAQYLKKNPSvRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQIETVSYG 80

                          90       100
                  ....*....|....*....|..
gi 880806419  179 ESEPIASNSTAEGRAKNRRSEI 200
Cdd:TIGR02802  81 KEKPAALGHDEAAWAKNRRAVL 102
PRK10510 PRK10510
OmpA family lipoprotein;
103-200 3.15e-19

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 82.23  E-value: 3.15e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880806419 103 FGFDQHNLTPMGSKALSQLAGELKT-NGSSITVDGHTDSTGEEGYNQALGLQRALTTSDGLIADGVEKNRLVIRSFGESE 181
Cdd:PRK10510 116 FDSSSATLKPAGANTLTGVAMVLKEyPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALITQGVDASRIRTQGMGPAN 195

                         90
                 ....*....|....*....
gi 880806419 182 PIASNSTAEGRAKNRRSEI 200
Cdd:PRK10510 196 PIASNSTAEGKAQNRRVEI 214
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 103-195 6.11e-19

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 78.17  E-value: 6.11e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880806419  103 FGFDQHNLTPMGSKALSQLAGELKTNG--SSITVDGHTDSTGEEGYNQALGLQRALTTSDGLIADGVEKNRLVIRSFGES 180
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPElkNTITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80

                          90
                  ....*....|....*
gi 880806419  181 EPIASNSTAEGRAKN 195
Cdd:pfam00691  81 KPITDNKTPEGRARN 95
 
Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 100-201 4.05e-38

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 127.67  E-value: 4.05e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880806419 100 RLHFGFDQHNLTPMGSKALSQLAGELKTN-GSSITVDGHTDSTGEEGYNQALGLQRALTTSDGLIADGVEKNRLVIRSFG 178
Cdd:cd07185    3 TIYFDFGSAELTPEAKPLLDKLAEVLKKNpDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYG 82

                         90       100
                 ....*....|....*....|...
gi 880806419 179 ESEPIASNSTAEGRAKNRRSEIW 201
Cdd:cd07185   83 ESRPIASNDTEEGRAKNRRVEIV 105
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 97-201 1.46e-36

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 129.52  E-value: 1.46e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880806419  97 LLARLHFGFDQHNLTPMGSKALSQLAGELKTNGS-SITVDGHTDSTGEEGYNQALGLQRALTTSDGLIADGVEKNRLVIR 175
Cdd:COG2885  185 LLSNVYFDFDSAELTPEAKAALDELAALLKENPDlRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLVSKGIPASRITAV 264

                         90       100
                 ....*....|....*....|....*.
gi 880806419 176 SFGESEPIASNSTAEGRAKNRRSEIW 201
Cdd:COG2885  265 GYGESRPVASNDTEEGRAKNRRVEIV 290
MotB COG1360
Flagellar motor protein MotB [Cell motility];
91-200 3.05e-23

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 91.44  E-value: 3.05e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880806419  91 NQERQGLLARLH----FGFDQHNLTPMGSKALSQLAGELKTNGSSITVDGHTDST---GEEGY-NQALGLQRALTTSDGL 162
Cdd:COG1360   47 RITEEGLVIEIQdrvlFDSGSAELTPEGRELLDKIAAVLAEVPNRIRVEGHTDNVpisTARFPsNWELSAARAAAVVRYL 126

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 880806419 163 IADGVEKNRLVIRSFGESEPIASNSTAEGRAKNRRSEI 200
Cdd:COG1360  127 IEGGVPPERLSAVGYGDTRPLAPNDTPEGRARNRRVEI 164
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 100-200 3.58e-23

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 89.16  E-value: 3.58e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880806419  100 RLHFGFDQHNLTPMGSKALSQLAGELKTNGS-SITVDGHTDSTGEEGYNQALGLQRALTTSDGLIADGVEKNRLVIRSFG 178
Cdd:TIGR02802   1 RVYFDFDSSDLKSEAQATLDAHAQYLKKNPSvRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQIETVSYG 80

                          90       100
                  ....*....|....*....|..
gi 880806419  179 ESEPIASNSTAEGRAKNRRSEI 200
Cdd:TIGR02802  81 KEKPAALGHDEAAWAKNRRAVL 102
PRK10510 PRK10510
OmpA family lipoprotein;
103-200 3.15e-19

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 82.23  E-value: 3.15e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880806419 103 FGFDQHNLTPMGSKALSQLAGELKT-NGSSITVDGHTDSTGEEGYNQALGLQRALTTSDGLIADGVEKNRLVIRSFGESE 181
Cdd:PRK10510 116 FDSSSATLKPAGANTLTGVAMVLKEyPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALITQGVDASRIRTQGMGPAN 195

                         90
                 ....*....|....*....
gi 880806419 182 PIASNSTAEGRAKNRRSEI 200
Cdd:PRK10510 196 PIASNSTAEGKAQNRRVEI 214
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 103-195 6.11e-19

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 78.17  E-value: 6.11e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880806419  103 FGFDQHNLTPMGSKALSQLAGELKTNG--SSITVDGHTDSTGEEGYNQALGLQRALTTSDGLIADGVEKNRLVIRSFGES 180
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPElkNTITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80

                          90
                  ....*....|....*
gi 880806419  181 EPIASNSTAEGRAKN 195
Cdd:pfam00691  81 KPITDNKTPEGRARN 95
PRK09967 PRK09967
OmpA family protein;
96-197 2.30e-18

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 78.48  E-value: 2.30e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880806419  96 GLLARLHFGFDQHNLTPMGSKALSQLAGELKTNG-SSITVDGHTDSTGEEGYNQALGLQRALTTSDGLiADG--VEKNRL 172
Cdd:PRK09967  49 GLSDAILFAKNDYKLLPESQQQIQTMAAKLASTGlTHARMDGHTDNYGEDSYNEGLSLKRANVVADAW-AMGgqIPRSNL 127

                         90       100
                 ....*....|....*....|....*
gi 880806419 173 VIRSFGESEPIASNSTAEGRAKNRR 197
Cdd:PRK09967 128 TTQGLGKKYPIASNKTAQGRAENRR 152
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 118-200 4.48e-17

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 74.26  E-value: 4.48e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880806419  118 LSQLAGELKTNGSSITVDGHTDS----TGEEGYNQALGLQRALTTSDGLIADGVEKNRLVIRSFGESEPIASNSTAEGRA 193
Cdd:TIGR03350  49 LLRIAKALAAVPGRITVVGHTDNvpirTARFPSNWHLSEARAKAVADVLAQAGGPAGRVRAEGRGDSEPIASNATAAGRA 128


                  ....*..
gi 880806419  194 KNRRSEI 200
Cdd:TIGR03350 129 RNRRVEI 135
PRK08126 PRK08126
hypothetical protein; Provisional
 118-200 4.12e-16

hypothetical protein; Provisional


Pssm-ID: 236157 [Multi-domain]  Cd Length: 432  Bit Score: 75.89  E-value: 4.12e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880806419 118 LSQLAGELKTNGSSITVDGHTDS----TGEEGYNQALGLQRALTTSDGLIADGVEKNRLVIRSFGESEPIASNSTAEGRA 193
Cdd:PRK08126 342 IAKIAREIARVGGKVTVTGHTDNqpirSAQFASNLVLSEKRAAQVAQMLQSAGVPASRLEAVGKGDAQPVADNRTPQGRA 421


                 ....*..
gi 880806419 194 KNRRSEI 200
Cdd:PRK08126 422 QNRRVEI 428
PRK10808 PRK10808
outer membrane protein A; Reviewed
 103-200 6.34e-16

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 75.11  E-value: 6.34e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880806419 103 FGFDQHNLTPMGSKALSQLAGELKT---NGSSITVDGHTDSTGEEGYNQALGLQRALTTSDGLIADGVEKNRLVIRSFGE 179
Cdd:PRK10808 228 FNFNKATLKPEGQQALDQLYSQLSNldpKDGSVVVLGYTDRIGSDAYNQGLSEKRAQSVVDYLVSKGIPADKISARGMGK 307

                         90       100       110
                 ....*....|....*....|....*....|
gi 880806419 180 SEPIASNSTAEGRAK---------NRRSEI 200
Cdd:PRK10808 308 SNPVTGNTCDNVKPRaalidclapDRRVEI 337
PRK09040 PRK09040
hypothetical protein; Provisional
 103-200 1.07e-14

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 69.66  E-value: 1.07e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880806419 103 FGFDQHNLTPMGSKALSQLAGE----LKTNGSSITVDGHTD----STGEEGY--NQALGLQRALTTSDGLIADGVEKNRL 172
Cdd:PRK09040  92 FALNSDQLQPEGRELLKSLAGPlaayLRARDEILMVSGFTDdqpvRAGNRRFadNWELSAQRALTVTRALIDAGVPASSV 171

                         90       100
                 ....*....|....*....|....*...
gi 880806419 173 VIRSFGESEPIASNSTAEGRAKNRRSEI 200
Cdd:PRK09040 172 FAAAFGSEQPVASNADDEGRAKNRRVEI 199
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 116-200 2.01e-13

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 67.34  E-value: 2.01e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880806419 116 KALSQLAGELKTNGSSITVDGHTD----STGEEGYNQALGLQRALTTSDGLIADGVEKNRLVIRSFGESEPIASNSTAEG 191
Cdd:PRK09038 150 AILEKVAEVLKPAPNPIHVEGFTDnvpiATAQFPSNWELSAARAASVVRLLADDGVAPSRLAAVGYGEFQPVADNDTAEG 229


                 ....*....
gi 880806419 192 RAKNRRSEI 200
Cdd:PRK09038 230 RARNRRVVL 238
PRK09039 PRK09039
peptidoglycan -binding protein;
110-200 2.42e-13

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 67.68  E-value: 2.42e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880806419 110 LTPMGSKALSQLAGELKTNGSSIT--------VDGHTD-----STGEEGYNQALGLQRALTTSDGLIADGVEKNRLVIRS 176
Cdd:PRK09039 235 LNPEGQAEIAKLAAALIELAKEIPpeinwvlrVDGHTDnvplsGTGRFRDNWELSSARAISVVKFLIALGVPADRLAAAG 314

                         90       100
                 ....*....|....*....|....
gi 880806419 177 FGESEPIASNSTAEGRAKNRRSEI 200
Cdd:PRK09039 315 FGEFQPLDPGDTPEARARNRRIEL 338
motB PRK08457
flagellar motor protein MotB; Reviewed
 116-212 7.20e-13

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 65.51  E-value: 7.20e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880806419 116 KALSQLAGELKTNgSSITVDGHTDSTGEEGY----NQALGLQRALTTSDGLIADGVEKNRLVIRSFGESEPIASNSTAEG 191
Cdd:PRK08457 143 KRIAKIITKLPKQ-VKINVRGYTDNSPLNKSrykdHYELAAARAYNVMKVLIQYGINPNRLSFSSYGSNNPIAPNDSLEN 221

                         90       100
                 ....*....|....*....|.
gi 880806419 192 RAKNRRSEIWASVnDAADLEN 212
Cdd:PRK08457 222 RLKNNRVEIFFKV-DANDTST 241
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
77-198 1.82e-11

peptidoglycan-associated lipoprotein Pal;


Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 60.27  E-value: 1.82e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880806419  77 NLGMNQSGCKTWISNQErqglLARL-----------HFGFDQHNLTPMGSKALSQLAGELKTNGS-SITVDGHTDSTGEE 144
Cdd:PRK10802  40 GTGMDANGGNGNMSSEE----QARLqmqqlqqnnivYFDLDKYDIRSDFAQMLDAHANFLRSNPSyKVTVEGHADERGTP 115

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 880806419 145 GYNQALGLQRALTTSDGLIADGVEKNRLVIRSFGESEPIASNSTAEGRAKNRRS 198
Cdd:PRK10802 116 EYNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYAKNRRA 169
motB PRK08944
flagellar motor protein MotB; Reviewed
 117-200 2.59e-11

flagellar motor protein MotB; Reviewed


Pssm-ID: 236356 [Multi-domain]  Cd Length: 302  Bit Score: 61.56  E-value: 2.59e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880806419 117 ALSQLAGELKTNGSSITVDGHTD----STGEEGYNQALGLQRALTTSDGLIA-DGVEKNRLVIRSFGESEPIASNSTAEG 191
Cdd:PRK08944 197 VVRKIGELLKDVPGIITVSGHTDnvpiSSELYRSNWDLSSARAVAVAHELLKvKGFDPQRLKVVGMADTQPLVPNDTAEN 276


                 ....*....
gi 880806419 192 RAKNRRSEI 200
Cdd:PRK08944 277 RARNRRVEI 285
pdsO TIGR03789
proteobacterial sortase system peptidoglycan-associated protein; A newly defined histidine ...
 31-197 1.32e-10

proteobacterial sortase system peptidoglycan-associated protein; A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the pfam00691 domain family, which is the peptidoglycan-associated region of flagellar motor protein MotB, OmpA (whose N-terminal region forms an outer membrane beta barrel), and peptidoglycan-associated lipoprotein Pal. Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274783 [Multi-domain]  Cd Length: 243  Bit Score: 59.05  E-value: 1.32e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880806419   31 DTASSEYQHSVRV--DDVVGIAQHRQSFLQIEQpsDSNELKQTLASQSNlgmnqsgcktwiSNQERQGLLA---RLHFGF 105
Cdd:TIGR03789  80 DETLKQQQQHIAQqrQQMVALTQKQQALEQLEA--EYQQAQVHLETLQQ------------DQQQLLEELAlgmNVQFRT 145

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880806419  106 DQHNLTPMGSKALSQLAGELKTNG-SSITVDGHTDSTGEEGYNQALGLQRALTTSDGLIADGVEKNRLVIRSFGESEPIA 184
Cdd:TIGR03789 146 GSSDIEPHFQPQLDEVATLMKQSPeLKLDLSGYADRRGDSQYNQALSEQRVLEVRSYLIKQGVDEARLTTQAFGESAPLK 225

                         170
                  ....*....|...
gi 880806419  185 SNSTAEGRAKNRR 197
Cdd:TIGR03789 226 DEQESESDFFDRR 238
motB PRK06667
flagellar motor protein MotB; Validated
 118-200 2.96e-09

flagellar motor protein MotB; Validated


Pssm-ID: 180652 [Multi-domain]  Cd Length: 252  Bit Score: 55.19  E-value: 2.96e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880806419 118 LSQLAGELKTNGSSITVDGHTDST-----GEEGYNQALGLQRALTTSDGLIADGV-EKNRLVIRSFGESEPIASNSTAEG 191
Cdd:PRK06667 148 IASFIGFLDLAGRNFRIEGHTDNVdvnpeGPWKSNWELSGARAVNMLEYILNYGDqSESWFQVSGFAGSRPLATEDTPEG 227


                 ....*....
gi 880806419 192 RAKNRRSEI 200
Cdd:PRK06667 228 RAYNRRIDI 236
PRK07033 PRK07033
DotU family type VI secretion system protein;
118-200 3.15e-09

DotU family type VI secretion system protein;


Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 55.83  E-value: 3.15e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880806419 118 LSQLAGELKTNGSSITVDGHTDS----TGEEGYNQALGLQRALTTSDGLIADGVEKNRLVIRSFGESEPIASNSTAEGRA 193
Cdd:PRK07033 333 LARVADALNQVKGNVLVTGYSDNvpirTARFPSNWELSQARAQAVRALLAARLGQPERVTAEGRGDSDPVAPNDSAENRA 412


                 ....*..
gi 880806419 194 KNRRSEI 200
Cdd:PRK07033 413 RNRRVEI 419
motB PRK07734
flagellar motor protein MotB; Reviewed
 132-200 1.27e-08

flagellar motor protein MotB; Reviewed


Pssm-ID: 236080 [Multi-domain]  Cd Length: 259  Bit Score: 53.59  E-value: 1.27e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 880806419 132 ITVDGHTDS----TGEEGYNQALGLQRALTTSDGLIadgvEKNRLVIRSF-----GESEPIASNSTAEGRAKNRRSEI 200
Cdd:PRK07734 176 ITISGHTDNvpiaNAQFASNWELSVMRAVNFMQVLL----ENKELDPEKFsakgyGEYKPIASNDTAEGRAKNRRVEV 249
PRK06742 PRK06742
flagellar motor protein MotS; Reviewed
 109-201 1.32e-07

flagellar motor protein MotS; Reviewed


Pssm-ID: 102525 [Multi-domain]  Cd Length: 225  Bit Score: 50.45  E-value: 1.32e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880806419 109 NLTPMGSKALSQLAGELKTNGSSITVDGHTDS--TGEEGY--NQALGLQRALTTSDGLI-ADGVEKNRLVIRSFGESEPI 183
Cdd:PRK06742 125 NVKPEAKEIISQLVGFFQSVPNPIVVEGHTDSrpIHNDKFpsNWELSSARAANMIHHLIeVYNVDDKRLAAVGYADTKPV 204

                         90
                 ....*....|....*...
gi 880806419 184 ASNSTAEGRAKNRRSEIW 201
Cdd:PRK06742 205 VPNDSPQNWEKNRRVVIY 222
PRK06925 PRK06925
flagellar motor protein MotB;
118-200 2.08e-04

flagellar motor protein MotB;


Pssm-ID: 235887 [Multi-domain]  Cd Length: 230  Bit Score: 40.90  E-value: 2.08e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880806419 118 LSQLAGELKTNGSSITVDGHTDSTGEEGY----NQALGLQRALTTSDGLIA-DGVEKNRLVIRSFGESEPIASNSTAEGR 192
Cdd:PRK06925 137 LHKIGVLLSTIPNDIKVEGHTDSRPISTYrypsNWELSAARASSVIRYFTSkEKLDSSRFIAVGYADTKPVVPNTTEENM 216


                 ....*...
gi 880806419 193 AKNRRSEI 200
Cdd:PRK06925 217 QENRRVEI 224
PRK07034 PRK07034
hypothetical protein; Provisional
 113-200 1.83e-03

hypothetical protein; Provisional


Pssm-ID: 168775 [Multi-domain]  Cd Length: 536  Bit Score: 38.62  E-value: 1.83e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880806419 113 MGSKALSQLAGELKTNGSSITVDGHTDS----TGEEGYNQALGLQRALTTSDGLiADGVEKNRLVIRSF-----GESEPI 183
Cdd:PRK07034 410 INKKNIERLGLALAPWPGDIEVIGHTDNkpfrSTSGNNNLKLSAARASVVADKL-RESTQINETHQREIsaigrGESDPL 488

                         90
                 ....*....|....*..
gi 880806419 184 ASNSTAEGRAKNRRSEI 200
Cdd:PRK07034 489 ADNATEEGRKRNRRVDI 505
PRK06778 PRK06778
hypothetical protein; Validated
 66-209 2.24e-03

hypothetical protein; Validated


Pssm-ID: 235860 [Multi-domain]  Cd Length: 289  Bit Score: 37.99  E-value: 2.24e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880806419  66 NELKQTLASQSNLGMN--QSGCKTWISNQERQGLLARlhfgfDQHNLTPMGSKALSQLAGELKTNGSSITVDGHTDSTG- 142
Cdd:PRK06778 122 NTIARDAHMEANLEMEivPQGLRVLIKDDQNRNMFER-----GSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAy 196

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 880806419 143 -EEGYNQ-ALGLQRALTTSDGLIADGVEKNRlVIRSFGESEPIASNSTAEGRAKNRRSEIWASVNDAAD 209
Cdd:PRK06778 197 kNNIYNNwNLSGDRALSARRVLEEAGMPEDK-VMQVSAMADQMLLDAKNPQSAGNRRIEIMVLTKSASD 264
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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