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Conserved domains on  [gi|880807410|ref|WP_048659586|]
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DmsC/YnfH family molybdoenzyme membrane anchor subunit [Vibrio crassostreae]

Protein Classification

dimethyl sulfoxide reductase anchor subunit family protein( domain architecture ID 10007172)

dimethyl sulfoxide (DMSO) reductase anchor subunit family protein similar to Escherichia coli dimethyl sulfoxide (DMSO) reductase anchor subunit DmsC which anchors the DMSO reductase complex to the periplasmic side of the inner membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DmsC COG3302
DMSO reductase anchor subunit DmsC [Energy production and conversion];
5-281 1.41e-60

DMSO reductase anchor subunit DmsC [Energy production and conversion];


:

Pssm-ID: 442531  Cd Length: 282  Bit Score: 193.56  E-value: 1.41e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880807410   5 EWSLIFFTVLAQTAVGGYLLIGARALVLGHGEEKLNSYKVPMFILWAFMGLGFMFSTTHLGSPLRAFNAFNQLGSAWLSN 84
Cdd:COG3302    4 EWPLVLFTVLSQAGVGLFLALALALLLGLLSPASRKRLLRALLLALVLLGVGLLASTFHLGHPLRAWRAFSNLRTSWLSR 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880807410  85 EVFFGAAFFAVGGLQWLLSVVKKGGVAIQKALVVGAMVLGVIFMYAMINVYMINTVPTWDNIYTPLSFIMTMVVGGLLLS 164
Cdd:COG3302   84 EIVAAVLFFALAGLYALLAWLGKLPGGLRKLLGLLAALLGLALVFAMAMIYQIKTVPTWNTPLTPLNFLLTALALGALLA 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880807410 165 QFVIVFANDSrFTVDRNITMLAVIAVAISLLVTVGKLNLIGDIQTSAAKASELV-DGLGSYVILQVALLMASLLIWILPM 243
Cdd:COG3302  164 ALLLALAGVD-LRALKALALLALLALVLALAVLVAYLARLASIGSATQTAAALLtREFGHLLALRLVLLALGFVLPLLPL 242

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 880807410 244 LNKAKVNPVNLGLALVLFLASELIGRGLFYSLHMTSGL 281
Cdd:COG3302  243 LRGSTAALALLALAFALVLAGELVGRWLFYALAVHVGM 280
 
Name Accession Description Interval E-value
DmsC COG3302
DMSO reductase anchor subunit DmsC [Energy production and conversion];
5-281 1.41e-60

DMSO reductase anchor subunit DmsC [Energy production and conversion];


Pssm-ID: 442531  Cd Length: 282  Bit Score: 193.56  E-value: 1.41e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880807410   5 EWSLIFFTVLAQTAVGGYLLIGARALVLGHGEEKLNSYKVPMFILWAFMGLGFMFSTTHLGSPLRAFNAFNQLGSAWLSN 84
Cdd:COG3302    4 EWPLVLFTVLSQAGVGLFLALALALLLGLLSPASRKRLLRALLLALVLLGVGLLASTFHLGHPLRAWRAFSNLRTSWLSR 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880807410  85 EVFFGAAFFAVGGLQWLLSVVKKGGVAIQKALVVGAMVLGVIFMYAMINVYMINTVPTWDNIYTPLSFIMTMVVGGLLLS 164
Cdd:COG3302   84 EIVAAVLFFALAGLYALLAWLGKLPGGLRKLLGLLAALLGLALVFAMAMIYQIKTVPTWNTPLTPLNFLLTALALGALLA 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880807410 165 QFVIVFANDSrFTVDRNITMLAVIAVAISLLVTVGKLNLIGDIQTSAAKASELV-DGLGSYVILQVALLMASLLIWILPM 243
Cdd:COG3302  164 ALLLALAGVD-LRALKALALLALLALVLALAVLVAYLARLASIGSATQTAAALLtREFGHLLALRLVLLALGFVLPLLPL 242

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 880807410 244 LNKAKVNPVNLGLALVLFLASELIGRGLFYSLHMTSGL 281
Cdd:COG3302  243 LRGSTAALALLALAFALVLAGELVGRWLFYALAVHVGM 280
DmsC pfam04976
DMSO reductase anchor subunit (DmsC); The terminal electron transfer enzyme Me2SO reductase of ...
 4-275 2.50e-58

DMSO reductase anchor subunit (DmsC); The terminal electron transfer enzyme Me2SO reductase of Escherichia coli is a heterotrimeric enzyme composed of a membrane extrinsic catalytic dimer (DmsAB) and a membrane intrinsic polytopic anchor subunit (DmsC).


Pssm-ID: 398575  Cd Length: 275  Bit Score: 187.65  E-value: 2.50e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880807410    4 HEWSLIFFTVLAQTAVGGYLLIGArALVLGHGEEKLNSYKVPMFILWAFMGLGFMFSTTHLGSPLRAFNAFNQLGSAWLS 83
Cdd:pfam04976   6 HELPLVIFTVLAQSVVGAFIVFAF-VLLFGKNQALRQYVHKSMFVLLALLGIGFIASIMHLGSPLRAFNSLNRVGASMLS 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880807410   84 NEVFFGAAFFAVGGLQWLLSVVKKGGVAIQKALVVGAMVLGVIFMYAMINVYMINTVPTWDNIYTPLSFIMTMVVGGLLL 163
Cdd:pfam04976  85 NEIAAGAIFFALAGLYWLVAILGKLPPALGHLWLIVTMALGIIFMYMMNMVYHIDTVPTWNTGITTWGFYLTVLLGGPTL 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880807410  164 SQFVIVFANDSRFTVdRNITMLAVIAVAISLLVTVGKLNLIGDIQTSAAKASELVDGLGSYVILQVALLMASLLIWILPM 243
Cdd:pfam04976 165 GYALLYFARVDTGTF-LFLPFLFVLALTLNAIVIIYQGFSLATIHSSVQQAAALVPDYATLIVLRYVLLFVALLLLLIPL 243

                         250       260       270
                  ....*....|....*....|....*....|..
gi 880807410  244 LNKAKVNPVNLGLALVLFLASELIGRGLFYSL 275
Cdd:pfam04976 244 YVTRVPNVPLLVLSVLLILAGEMIGRVLFYGL 275
 
Name Accession Description Interval E-value
DmsC COG3302
DMSO reductase anchor subunit DmsC [Energy production and conversion];
5-281 1.41e-60

DMSO reductase anchor subunit DmsC [Energy production and conversion];


Pssm-ID: 442531  Cd Length: 282  Bit Score: 193.56  E-value: 1.41e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880807410   5 EWSLIFFTVLAQTAVGGYLLIGARALVLGHGEEKLNSYKVPMFILWAFMGLGFMFSTTHLGSPLRAFNAFNQLGSAWLSN 84
Cdd:COG3302    4 EWPLVLFTVLSQAGVGLFLALALALLLGLLSPASRKRLLRALLLALVLLGVGLLASTFHLGHPLRAWRAFSNLRTSWLSR 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880807410  85 EVFFGAAFFAVGGLQWLLSVVKKGGVAIQKALVVGAMVLGVIFMYAMINVYMINTVPTWDNIYTPLSFIMTMVVGGLLLS 164
Cdd:COG3302   84 EIVAAVLFFALAGLYALLAWLGKLPGGLRKLLGLLAALLGLALVFAMAMIYQIKTVPTWNTPLTPLNFLLTALALGALLA 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880807410 165 QFVIVFANDSrFTVDRNITMLAVIAVAISLLVTVGKLNLIGDIQTSAAKASELV-DGLGSYVILQVALLMASLLIWILPM 243
Cdd:COG3302  164 ALLLALAGVD-LRALKALALLALLALVLALAVLVAYLARLASIGSATQTAAALLtREFGHLLALRLVLLALGFVLPLLPL 242

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 880807410 244 LNKAKVNPVNLGLALVLFLASELIGRGLFYSLHMTSGL 281
Cdd:COG3302  243 LRGSTAALALLALAFALVLAGELVGRWLFYALAVHVGM 280
DmsC pfam04976
DMSO reductase anchor subunit (DmsC); The terminal electron transfer enzyme Me2SO reductase of ...
 4-275 2.50e-58

DMSO reductase anchor subunit (DmsC); The terminal electron transfer enzyme Me2SO reductase of Escherichia coli is a heterotrimeric enzyme composed of a membrane extrinsic catalytic dimer (DmsAB) and a membrane intrinsic polytopic anchor subunit (DmsC).


Pssm-ID: 398575  Cd Length: 275  Bit Score: 187.65  E-value: 2.50e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880807410    4 HEWSLIFFTVLAQTAVGGYLLIGArALVLGHGEEKLNSYKVPMFILWAFMGLGFMFSTTHLGSPLRAFNAFNQLGSAWLS 83
Cdd:pfam04976   6 HELPLVIFTVLAQSVVGAFIVFAF-VLLFGKNQALRQYVHKSMFVLLALLGIGFIASIMHLGSPLRAFNSLNRVGASMLS 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880807410   84 NEVFFGAAFFAVGGLQWLLSVVKKGGVAIQKALVVGAMVLGVIFMYAMINVYMINTVPTWDNIYTPLSFIMTMVVGGLLL 163
Cdd:pfam04976  85 NEIAAGAIFFALAGLYWLVAILGKLPPALGHLWLIVTMALGIIFMYMMNMVYHIDTVPTWNTGITTWGFYLTVLLGGPTL 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880807410  164 SQFVIVFANDSRFTVdRNITMLAVIAVAISLLVTVGKLNLIGDIQTSAAKASELVDGLGSYVILQVALLMASLLIWILPM 243
Cdd:pfam04976 165 GYALLYFARVDTGTF-LFLPFLFVLALTLNAIVIIYQGFSLATIHSSVQQAAALVPDYATLIVLRYVLLFVALLLLLIPL 243

                         250       260       270
                  ....*....|....*....|....*....|..
gi 880807410  244 LNKAKVNPVNLGLALVLFLASELIGRGLFYSL 275
Cdd:pfam04976 244 YVTRVPNVPLLVLSVLLILAGEMIGRVLFYGL 275
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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