NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|880808831|ref|WP_048660996|]
View 

DUF1294 domain-containing protein [Vibrio crassostreae]

Protein Classification

DUF1294 domain-containing protein( domain architecture ID 10007224)

DUF1294 domain-containing protein similar to Bacillus subtilis protein YsdA

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
YsdA COG3326
Uncharacterized membrane protein YsdA, DUF1294 family [Function unknown];
29-111 2.49e-33

Uncharacterized membrane protein YsdA, DUF1294 family [Function unknown];


:

Pssm-ID: 442555  Cd Length: 90  Bit Score: 111.79  E-value: 2.49e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808831  29 LLVWYLVIGLVTFFVYAKDKRAAINGNWRVPEKTLHVFSVAGGWLGALIAQDKLRHKTQKQPFRAIYWLTVAINIAVFIW 108
Cdd:COG3326    7 LLLYLLLINLLTFLLYGIDKRAARKGRWRIPEKTLLLLALLGGWPGALLGQQLFRHKTRKKSFRIGFWLIVLLNLALLAW 86

                 ...
gi 880808831 109 TLT 111
Cdd:COG3326   87 LLS 89
 
Name Accession Description Interval E-value
YsdA COG3326
Uncharacterized membrane protein YsdA, DUF1294 family [Function unknown];
29-111 2.49e-33

Uncharacterized membrane protein YsdA, DUF1294 family [Function unknown];


Pssm-ID: 442555  Cd Length: 90  Bit Score: 111.79  E-value: 2.49e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808831  29 LLVWYLVIGLVTFFVYAKDKRAAINGNWRVPEKTLHVFSVAGGWLGALIAQDKLRHKTQKQPFRAIYWLTVAINIAVFIW 108
Cdd:COG3326    7 LLLYLLLINLLTFLLYGIDKRAARKGRWRIPEKTLLLLALLGGWPGALLGQQLFRHKTRKKSFRIGFWLIVLLNLALLAW 86

                 ...
gi 880808831 109 TLT 111
Cdd:COG3326   87 LLS 89
DUF1294 pfam06961
Protein of unknown function (DUF1294); This family includes a number of hypothetical bacterial ...
38-91 5.24e-24

Protein of unknown function (DUF1294); This family includes a number of hypothetical bacterial and archaeal proteins of unknown function.


Pssm-ID: 462051  Cd Length: 55  Bit Score: 87.02  E-value: 5.24e-24
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 880808831   38 LVTFFVYAKDKRAAINGNWRVPEKTLHVFSVAGGWLGALIAQDKLRHKTQKQPF 91
Cdd:pfam06961   2 LITFILYGIDKRKARKGRWRIPEKTLLLLALLGGSPGALLGMRLFRHKTRKKSF 55
 
Name Accession Description Interval E-value
YsdA COG3326
Uncharacterized membrane protein YsdA, DUF1294 family [Function unknown];
29-111 2.49e-33

Uncharacterized membrane protein YsdA, DUF1294 family [Function unknown];


Pssm-ID: 442555  Cd Length: 90  Bit Score: 111.79  E-value: 2.49e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808831  29 LLVWYLVIGLVTFFVYAKDKRAAINGNWRVPEKTLHVFSVAGGWLGALIAQDKLRHKTQKQPFRAIYWLTVAINIAVFIW 108
Cdd:COG3326    7 LLLYLLLINLLTFLLYGIDKRAARKGRWRIPEKTLLLLALLGGWPGALLGQQLFRHKTRKKSFRIGFWLIVLLNLALLAW 86

                 ...
gi 880808831 109 TLT 111
Cdd:COG3326   87 LLS 89
DUF1294 pfam06961
Protein of unknown function (DUF1294); This family includes a number of hypothetical bacterial ...
38-91 5.24e-24

Protein of unknown function (DUF1294); This family includes a number of hypothetical bacterial and archaeal proteins of unknown function.


Pssm-ID: 462051  Cd Length: 55  Bit Score: 87.02  E-value: 5.24e-24
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 880808831   38 LVTFFVYAKDKRAAINGNWRVPEKTLHVFSVAGGWLGALIAQDKLRHKTQKQPF 91
Cdd:pfam06961   2 LITFILYGIDKRKARKGRWRIPEKTLLLLALLGGSPGALLGMRLFRHKTRKKSF 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH
HHS Vulnerability Disclosure