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Conserved domains on  [gi|880808871|ref|WP_048661034|]
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MULTISPECIES: phosphate ABC transporter permease PstA [Vibrio]

Protein Classification

PstA family ABC transporter permease( domain architecture ID 11426443)

PstA family ABC transporter permease is the transmembrane subunit (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporters; similar to phosphate transport system permease protein PstA

Gene Ontology:  GO:0140359|GO:0042626|GO:0043190|GO:0016020
PubMed:  25750732|24638992|18535149|17723295
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 27-282 5.10e-107

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


:

Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 311.20  E-value: 5.10e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871  27 VTVGFLFWIIWYILSNGLQYVDWNFITDDYTRTGEERGIFPMIIATIYMVIASIAVAAPLGIMTAIYLTEYAKvGSRLVK 106
Cdd:COG0581    1 LALLPLVWILGTVLVKGLPALSWEFLTSSPSPGPEGGGILPAIVGTLLLVLLATLIAVPLGVLAAIYLAEYAR-GGRLAR 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871 107 VIRFCTESLAGIPSIIFGLFGMTFFVSILGLGFSILSGALTLSILILPVIIRTTEEALMAVPQTYREGSYGLGASKIYTI 186
Cdd:COG0581   80 LIRFAIDVLAGVPSIVYGLFGYALFVLTLGLGFSLLAGALALALLMLPVVIRTTEEALRLVPNSLREASYALGATKWQTI 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871 187 WRLILPSAMPGILTSVILSIGRVIGESAPVFLTAGMVARVPESVFDSGRTLTVHLYKLTTELFtiDEWNQ-AYGTATVLI 265
Cdd:COG0581  160 RKVVLPAALPGILTGVILAIARAAGETAPLLFTAGVSPFLPLSLFDPFATLPVHIYNLASSPY--PAAQElAWAAALVLL 237

                        250
                 ....*....|....*..
gi 880808871 266 VLVLLINMVTKLIARRF 282
Cdd:COG0581  238 LLVLLLNLLARLLRRRF 254
 
Name Accession Description Interval E-value
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 27-282 5.10e-107

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 311.20  E-value: 5.10e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871  27 VTVGFLFWIIWYILSNGLQYVDWNFITDDYTRTGEERGIFPMIIATIYMVIASIAVAAPLGIMTAIYLTEYAKvGSRLVK 106
Cdd:COG0581    1 LALLPLVWILGTVLVKGLPALSWEFLTSSPSPGPEGGGILPAIVGTLLLVLLATLIAVPLGVLAAIYLAEYAR-GGRLAR 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871 107 VIRFCTESLAGIPSIIFGLFGMTFFVSILGLGFSILSGALTLSILILPVIIRTTEEALMAVPQTYREGSYGLGASKIYTI 186
Cdd:COG0581   80 LIRFAIDVLAGVPSIVYGLFGYALFVLTLGLGFSLLAGALALALLMLPVVIRTTEEALRLVPNSLREASYALGATKWQTI 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871 187 WRLILPSAMPGILTSVILSIGRVIGESAPVFLTAGMVARVPESVFDSGRTLTVHLYKLTTELFtiDEWNQ-AYGTATVLI 265
Cdd:COG0581  160 RKVVLPAALPGILTGVILAIARAAGETAPLLFTAGVSPFLPLSLFDPFATLPVHIYNLASSPY--PAAQElAWAAALVLL 237

                        250
                 ....*....|....*..
gi 880808871 266 VLVLLINMVTKLIARRF 282
Cdd:COG0581  238 LLVLLLNLLARLLRRRF 254
3a0107s02c TIGR00974
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ...
 14-283 1.97e-106

phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273373  Cd Length: 271  Bit Score: 309.94  E-value: 1.97e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871   14 DNILKGFIWAAAAVTVGFLFWIIWYILSNGLQYVDWNFITDDYTRTGEERGIFPMIIATIYMVIASIAVAAPLGIMTAIY 93
Cdd:TIGR00974   1 DKIFTFISLLSALLALLPLIWILWYILIKGLPALNLEFFTKSPTPTGAEGGIGPAIVGTLLLTLLAIVIAVPLGIGAAIY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871   94 LTEYAKvGSRLVKVIRFCTESLAGIPSIIFGLFGMTFFVS-ILGLGFSILSGALTLSILILPVIIRTTEEALMAVPQTYR 172
Cdd:TIGR00974  81 LAEYAN-GSRFTKIIRFAVDILAGVPSIVVGLFGYGFFVLtYLGGGFSLLAGALALALLILPVIIRTTEEALKAVPKDLR 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871  173 EGSYGLGASKIYTIWRLILPSAMPGILTSVILSIGRVIGESAPVFLTAGMVARVPESVFDSGRTLTVHLYKLTTELFTID 252
Cdd:TIGR00974 160 EASLALGATKWQTIFKVVLPAALPGILTGIILSIARAAGETAPLLFTAGGSAFTPPNLFDPFATLPVLIYNLASEGPYVE 239

                         250       260       270
                  ....*....|....*....|....*....|.
gi 880808871  253 EWNQAYGTATVLIVLVLLINMVTKLIARRFN 283
Cdd:TIGR00974 240 AQQLAWAAALVLIVLVLLLNLIARLLRRRFK 270
pstA PRK11268
phosphate ABC transporter permease PstA;
3-281 2.99e-33

phosphate ABC transporter permease PstA;


Pssm-ID: 183065 [Multi-domain]  Cd Length: 295  Bit Score: 123.26  E-value: 2.99e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871   3 RVKLKQARQIKDNILKGFIWAAAAVTVGFLFWIIWYILSNGLQYVDWNFITDDYTRTGEERG-IFPMIIATIYMVIASIA 81
Cdd:PRK11268  16 RRKMQARRRLKNRIALTLSMATMAFGLFWLIWILMSTITLGIDGMSLALFTEMTPPPNTAGGgLANAIAGSGLLILWATV 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871  82 VAAPLGIMTAIYLTEYAKvGSRLVKVIRFCTESLAGIPSIIFGLFGMTFFVSILGlGFSILSGALTLSILILPVIIRTTE 161
Cdd:PRK11268  96 VGTPLGIMAGIYLAEYGR-KSWLAEVIRFINDILLSAPSIVVGLFVYTIVVAQME-HFSGWAGVIALALLQIPIVIRTTE 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871 162 EALMAVPQTYREGSYGLGASKIYTIWRLILPSAMPGILTSVILSIGRVIGESAPVFLTAGMVARVPESVFDSGRTLTVHL 241
Cdd:PRK11268 174 NMLKLVPDSLREAAYALGTPKWKMISAITLKASVSGIMTGVLLAIARIAGETAPLLFTALSNQFWSTDMMQPIANLPVTI 253

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 880808871 242 YKLTTELFTidEWNQAYGTATVLIVL-VLLINMVTKLIARR 281
Cdd:PRK11268 254 FKFAMSPFA--EWQQLAWAGVLLITLcVLLLNILARVVFAK 292
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 69-227 1.13e-16

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 76.16  E-value: 1.13e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871  69 IIATIYMVIASIAVAAPLGIMTAIYLTEYakvGSRLVKVIRFCTESLAGIPSIIFGLFGMTFFVSILG---LGFSILSGA 145
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARK---RGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGwgiLPGLGLPAL 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871 146 LTLSILILPVIIRTTEEALMAVPQTYREGSYGLGASKIYTIWRLILPSAMPGILTSVILSIGRVIGESAPVFLTAGMVAR 225
Cdd:cd06261   78 ILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAP 157


                 ..
gi 880808871 226 VP 227
Cdd:cd06261  158 GP 159
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 83-214 1.13e-10

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 59.23  E-value: 1.13e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871   83 AAPLGIMTAIYLteyakvGSRLVKVIRFCTESLAGIPSIIFGLFgMTFFVSILGLGFSILSGALTLSILILPVIIRTTEE 162
Cdd:pfam00528   1 GIPLGIIAALRR------GRRLDRLLRPLIDLLQALPSFVLAIL-LVVIAILSILGHGILPAIILALLGWAGYARLIRRA 73

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 880808871  163 ALMAVPQTYREGSYGLGASKIYTIWRLILPSAMPGILTSVILSIGRVIGESA 214
Cdd:pfam00528  74 ALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAV 125
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 72-221 8.06e-06

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 45.23  E-value: 8.06e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871  72 TIYMVIASIAVAAPLGIMTAIYLTEYAKVGSRLVKVIRFcteSLAGIPSIIFGLFgMTFFVS------ILGLGFSILSGA 145
Cdd:NF038017   1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLN---TLMGLPPVVVGLI-VYLLLSrsgplgFLGLLYTPTAMI 76

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 880808871 146 LTLSILILPVIIRTTEEALMAVPQTYREGSYGLGASKIYTIWrLILPSAMPGILTSVILSIGRVIGESAPVFLTAG 221
Cdd:NF038017  77 IAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALW-TLLKEARFALLAAVLAGFGRAISEVGAVMMVGG 151
 
Name Accession Description Interval E-value
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 27-282 5.10e-107

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 311.20  E-value: 5.10e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871  27 VTVGFLFWIIWYILSNGLQYVDWNFITDDYTRTGEERGIFPMIIATIYMVIASIAVAAPLGIMTAIYLTEYAKvGSRLVK 106
Cdd:COG0581    1 LALLPLVWILGTVLVKGLPALSWEFLTSSPSPGPEGGGILPAIVGTLLLVLLATLIAVPLGVLAAIYLAEYAR-GGRLAR 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871 107 VIRFCTESLAGIPSIIFGLFGMTFFVSILGLGFSILSGALTLSILILPVIIRTTEEALMAVPQTYREGSYGLGASKIYTI 186
Cdd:COG0581   80 LIRFAIDVLAGVPSIVYGLFGYALFVLTLGLGFSLLAGALALALLMLPVVIRTTEEALRLVPNSLREASYALGATKWQTI 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871 187 WRLILPSAMPGILTSVILSIGRVIGESAPVFLTAGMVARVPESVFDSGRTLTVHLYKLTTELFtiDEWNQ-AYGTATVLI 265
Cdd:COG0581  160 RKVVLPAALPGILTGVILAIARAAGETAPLLFTAGVSPFLPLSLFDPFATLPVHIYNLASSPY--PAAQElAWAAALVLL 237

                        250
                 ....*....|....*..
gi 880808871 266 VLVLLINMVTKLIARRF 282
Cdd:COG0581  238 LLVLLLNLLARLLRRRF 254
3a0107s02c TIGR00974
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ...
 14-283 1.97e-106

phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273373  Cd Length: 271  Bit Score: 309.94  E-value: 1.97e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871   14 DNILKGFIWAAAAVTVGFLFWIIWYILSNGLQYVDWNFITDDYTRTGEERGIFPMIIATIYMVIASIAVAAPLGIMTAIY 93
Cdd:TIGR00974   1 DKIFTFISLLSALLALLPLIWILWYILIKGLPALNLEFFTKSPTPTGAEGGIGPAIVGTLLLTLLAIVIAVPLGIGAAIY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871   94 LTEYAKvGSRLVKVIRFCTESLAGIPSIIFGLFGMTFFVS-ILGLGFSILSGALTLSILILPVIIRTTEEALMAVPQTYR 172
Cdd:TIGR00974  81 LAEYAN-GSRFTKIIRFAVDILAGVPSIVVGLFGYGFFVLtYLGGGFSLLAGALALALLILPVIIRTTEEALKAVPKDLR 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871  173 EGSYGLGASKIYTIWRLILPSAMPGILTSVILSIGRVIGESAPVFLTAGMVARVPESVFDSGRTLTVHLYKLTTELFTID 252
Cdd:TIGR00974 160 EASLALGATKWQTIFKVVLPAALPGILTGIILSIARAAGETAPLLFTAGGSAFTPPNLFDPFATLPVLIYNLASEGPYVE 239

                         250       260       270
                  ....*....|....*....|....*....|.
gi 880808871  253 EWNQAYGTATVLIVLVLLINMVTKLIARRFN 283
Cdd:TIGR00974 240 AQQLAWAAALVLIVLVLLLNLIARLLRRRFK 270
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 5-282 2.50e-72

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 224.58  E-value: 2.50e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871   5 KLKQARQIKDNILKGFIWAAAAVTVGFLFWIIWYILSNGL----QYVDWNFITD---DYTRTGEERGIFPMIIATIYMVI 77
Cdd:COG0573    8 PRRRRRRLGDRLFRGLLLLAALLSILILLLIVLFLLIESLpafqEVGLLEFLTGtewNPVSSNGEFGILPLIVGTLLVSL 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871  78 ASIAVAAPLGIMTAIYLTEYAkvGSRLVKVIRFCTESLAGIPSIIFGLFGMTFFVSIL-------GLGFSILSGALTLSI 150
Cdd:COG0573   88 IALLIAVPLGLGIAIFLSEYA--PPRLRRILKPAIELLAGIPSVVYGFWGLFVLVPLLrdlfpwpPSGFSLLTAGIVLAI 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871 151 LILPVIIRTTEEALMAVPQTYREGSYGLGASKIYTIWRLILPSAMPGILTSVILSIGRVIGESAPVFLTAGMVARVPESV 230
Cdd:COG0573  166 MILPTITSLSRDALRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAVILGLGRALGETMAVLMVAGNAPQIPFSL 245

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 880808871 231 FDSGRTLTVHLYKLTTELFTIDEWNQA-YGTATVLIVLVLLINMVTKLIARRF 282
Cdd:COG0573  246 FDPGRTLTALIALEFGEAPFGSLHYSAlFALGLVLFVITLLVNLLARLIVRRY 298
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 14-282 1.89e-51

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 170.53  E-value: 1.89e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871   14 DNILKGFIWAAAAVTVGFLFWIIWYILSNGLQYVD----WNFITDDY-----TRTGEERGIFPMIIATIYMVIASIAVAA 84
Cdd:TIGR02138   1 EKIFKGLLLFSAVIIVLVLLLIVLFLLYEAIPAFEkngiLNFLTGTVwdpgsGPVQEQYGALPLIVGTLITSLIALLIAV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871   85 PLGIMTAIYLTEYAkvGSRLVKVIRFCTESLAGIPSIIFGLFGMTFFV----------------SILGLGFSILSGALTL 148
Cdd:TIGR02138  81 PVGIGIAIFLSEIA--PKRVRSVLKPVVELLAGIPSVVYGFWGLFVLVpflkphfqpflgsnlgLIPLFGGPILTAGIVL 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871  149 SILILPVIIRTTEEALMAVPQTYREGSYGLGASKIYTIWRLILPSAMPGILTSVILSIGRVIGESAPVFLTAGMVARV-P 227
Cdd:TIGR02138 159 AIMILPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLGRALGETMAVTMVIGNVFPIsP 238

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 880808871  228 ESVFDSGRTLTVHLYKLTTELFTIDEWNQA-YGTATVLIVLVLLINMVTKLIARRF 282
Cdd:TIGR02138 239 LSLFDPGTTITSLIANQFGEASGGSVHTSAlFALGLVLFVITLLVNILARYIVRRR 294
pstA PRK11268
phosphate ABC transporter permease PstA;
3-281 2.99e-33

phosphate ABC transporter permease PstA;


Pssm-ID: 183065 [Multi-domain]  Cd Length: 295  Bit Score: 123.26  E-value: 2.99e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871   3 RVKLKQARQIKDNILKGFIWAAAAVTVGFLFWIIWYILSNGLQYVDWNFITDDYTRTGEERG-IFPMIIATIYMVIASIA 81
Cdd:PRK11268  16 RRKMQARRRLKNRIALTLSMATMAFGLFWLIWILMSTITLGIDGMSLALFTEMTPPPNTAGGgLANAIAGSGLLILWATV 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871  82 VAAPLGIMTAIYLTEYAKvGSRLVKVIRFCTESLAGIPSIIFGLFGMTFFVSILGlGFSILSGALTLSILILPVIIRTTE 161
Cdd:PRK11268  96 VGTPLGIMAGIYLAEYGR-KSWLAEVIRFINDILLSAPSIVVGLFVYTIVVAQME-HFSGWAGVIALALLQIPIVIRTTE 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871 162 EALMAVPQTYREGSYGLGASKIYTIWRLILPSAMPGILTSVILSIGRVIGESAPVFLTAGMVARVPESVFDSGRTLTVHL 241
Cdd:PRK11268 174 NMLKLVPDSLREAAYALGTPKWKMISAITLKASVSGIMTGVLLAIARIAGETAPLLFTALSNQFWSTDMMQPIANLPVTI 253

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 880808871 242 YKLTTELFTidEWNQAYGTATVLIVL-VLLINMVTKLIARR 281
Cdd:PRK11268 254 FKFAMSPFA--EWQQLAWAGVLLITLcVLLLNILARVVFAK 292
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 69-227 1.13e-16

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 76.16  E-value: 1.13e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871  69 IIATIYMVIASIAVAAPLGIMTAIYLTEYakvGSRLVKVIRFCTESLAGIPSIIFGLFGMTFFVSILG---LGFSILSGA 145
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARK---RGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGwgiLPGLGLPAL 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871 146 LTLSILILPVIIRTTEEALMAVPQTYREGSYGLGASKIYTIWRLILPSAMPGILTSVILSIGRVIGESAPVFLTAGMVAR 225
Cdd:cd06261   78 ILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAP 157


                 ..
gi 880808871 226 VP 227
Cdd:cd06261  158 GP 159
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
8-281 1.42e-14

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 73.27  E-value: 1.42e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871   8 QARQIKDNILKGFIWAAAAVTVGFLFWI-IWYILSNGLQ-YVDWNFITDDYTRTGEERGIFPMIIATIYMVIASIAVAAP 85
Cdd:COG1178  277 RPRRVKLGRWRWLALALCLLLVLLGLLLpLLALLLWSLTkALDDNLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVL 356

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871  86 LGIMTAIYLteyAKVGSRLVKVIRFCTESLAGIPSIIFGLFGMTFFVSILGLGFSILSGALTL--SILILPVIIRTTEEA 163
Cdd:COG1178  357 LALLLAYLV---RRRRGRLARLLDRLAMLPYAVPGIVLGLGLLLLFNRPLPLLLYGTLAILVLayVVRFLPFALRSLEAA 433

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871 164 LMAVPQTYREGSYGLGASKIYTIWRLILPSAMPGILTSVILSIGRVIGEsapvfLTAGMVARVPESvfdsgRTLTVHLYK 243
Cdd:COG1178  434 LAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKE-----LSATLLLRPPGF-----ETLAVLIYQ 503

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 880808871 244 LTTELFtideWNQAYGTATVLIVLVLLINMVTKLIARR 281
Cdd:COG1178  504 LASSGR----YGEAAALALLLVLVSLLPVLLLERLLGR 537
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 77-281 1.01e-11

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 63.59  E-value: 1.01e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871  77 IASIAVAAPLGIMTAIYLTEYAKVGSRLVKVIRFcteSLAGIPSIIFGLfGMTFFVSILGLGFSILSGALTLSILILPVI 156
Cdd:COG1177   71 LLSTLLATVLGTPAALALARYRFRGRRLLLALLL---LPLVVPGIVLGV-ALLLLFSALGLSGGLWGLILAHVVFTLPFV 146

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871 157 IRTTEEALMAVPQTYREGSYGLGASKIYTIWRLILPSAMPGILTSVILSIGRVIGESAPVFLTAGmvarvpesvfDSGRT 236
Cdd:COG1177  147 VLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAG----------PGVTT 216

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 880808871 237 LTVHLYKLTTELFTidewNQAYGTATVLIVLVLLINMVTKLIARR 281
Cdd:COG1177  217 LPVYIYSMIRRGIS----PEINALSTLLILLSLLLLLLAERLRRR 257
pstC PRK11275
phosphate ABC transporter permease PstC;
69-216 4.45e-11

phosphate ABC transporter permease PstC;


Pssm-ID: 183070  Cd Length: 319  Bit Score: 62.40  E-value: 4.45e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871  69 IIATIYMVIASIAVAAPLGIMTAIYLTEYAKVGSRlvKVIRFCTESLAGIPSIIFGLFGMTFFVSILG------------ 136
Cdd:PRK11275  75 IYGTLVTSFIALLIAVPVSFGIALFLTELAPGWLK--RPLGIAIELLAAIPSIVYGMWGLFVFAPLFAtyfqepvgnvls 152

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871 137 -------------LGFSILSGALTLSILILPVIIRTTEEALMAVPQTYREGSYGLGASKIYTIWRLILPSAMPGILTSVI 203
Cdd:PRK11275 153 nipivgalfsgpaFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVM 232

                        170
                 ....*....|...
gi 880808871 204 LSIGRVIGESAPV 216
Cdd:PRK11275 233 LGLGRALGETMAV 245
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 83-214 1.13e-10

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 59.23  E-value: 1.13e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871   83 AAPLGIMTAIYLteyakvGSRLVKVIRFCTESLAGIPSIIFGLFgMTFFVSILGLGFSILSGALTLSILILPVIIRTTEE 162
Cdd:pfam00528   1 GIPLGIIAALRR------GRRLDRLLRPLIDLLQALPSFVLAIL-LVVIAILSILGHGILPAIILALLGWAGYARLIRRA 73

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 880808871  163 ALMAVPQTYREGSYGLGASKIYTIWRLILPSAMPGILTSVILSIGRVIGESA 214
Cdd:pfam00528  74 ALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAV 125
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
20-286 2.10e-10

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 60.95  E-value: 2.10e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871  20 FIWAAAAVTVGFLFWIIWYILSNGLQYVD---WNFITDDYTRTgeergifpMIIATIYMVIASIAVAAPLGIMTAIYLTE 96
Cdd:COG1178   12 LLLLLALLLALLVLLPLLALLLRAFTDGLanfWALLSDPYLWR--------ALGNTLLLALLVTLLSLLLGVPLAWLLAR 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871  97 YAKVGSRLVKVIrfCTESLAgIPSIIFG-----LFG-----MTFFVSILGLGFSILSG----ALTLSILILPVIIRTTEE 162
Cdd:COG1178   84 TDFPGRRLLRWL--LLLPLA-LPPYVVAlawiaLFGpngllNTLLRALFGLEPPDIYGlggiILVLVLFNYPYVYLLLRA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871 163 ALMAVPQTYREGSYGLGASKIYTIWRLILPSAMPGILTSVILSIGRVIGESAPVFLTAGMVarvpesvfdsgRTLTVHLY 242
Cdd:COG1178  161 ALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGGGY-----------TTLTTAIY 229

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 880808871 243 KLTTELFTIdewNQAYGTATVLIVLVLLINMVTKLIARRFNTAT 286
Cdd:COG1178  230 QAWLGDFDL---GAAAALALVLLLLVLLLLLLERRLRRRRRYAT 270
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 72-283 4.66e-10

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 58.99  E-value: 4.66e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871  72 TIYMVIASIAVAAPLGIMTAIYLTEYAKVGSRLVKVI---RFCT-ESLAGIP-SIIF---GLFGMTFFVSILGLGFSILS 143
Cdd:COG0555   59 SLGTALIAALINLVFGLPLAWVLVRYRFPGKRLVDALvdlPFALpTAVAGIAlLLLFgpnGWLGQLLAPLGIKVAFTPLG 138

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871 144 GALTLSILILPVIIRTTEEALMAVPQTYREGSYGLGASKIYTIWRLILPSAMPGILTSVILSIGRVIGESAPVFLTAGMV 223
Cdd:COG0555  139 IVLAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIAGNL 218

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871 224 ARVPEsvfdsgrTLTVHLYkltTELFTIDeWNQAYGTATVLIVLVLLINMVTKLIARRFN 283
Cdd:COG0555  219 PMKTE-------ILPLLIY---LKLEEGD-YAGATAIALVLLLISFLLLLLINLLQRRSR 267
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 153-282 1.10e-09

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 57.37  E-value: 1.10e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871 153 LPVIIRTTEEALMAVPQTYREGSYGLGASKIYTIWRLILPSAMPGILTSVILSIGRVIGESAPVFLTAGMVARVPesvfd 232
Cdd:COG4149  102 LPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALGEFGATLMFAGNIPGKT----- 176

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 880808871 233 sgRTLTVHLYklttELFTIDEWNQAYGTATVLIVLVLLINMVTKLIARRF 282
Cdd:COG4149  177 --QTLPLAIY----DAVEAGDYAAAHALSLILLAISFVVLLLLNLLNRRR 220
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 77-230 4.03e-08

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 52.79  E-value: 4.03e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871   77 IASIAVAAPLGIMTAIYLTEYAKVGSRLVKVI----RFCTESLAGIPSII----FGLFGMTFFVSILGLGFSILSGALTL 148
Cdd:TIGR01581  31 LASLLLAVIIGIPTAYVLARVRFPLKKLLDTLldlpMVLPPLVAGLALLLlfgrNGLLGPYLEAAGIQVIFSTLGVVLAQ 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871  149 SILILPVIIRTTEEALMAVPQTYREGSYGLGASKIYTIWRLILPSAMPGILTSVILSIGRVIGESAPVFLTAGMVARVPE 228
Cdd:TIGR01581 111 TFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVLAWARALGEFGATLMFAGSIQGKTR 190


                  ..
gi 880808871  229 SV 230
Cdd:TIGR01581 191 TL 192
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 62-207 1.18e-07

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 51.69  E-value: 1.18e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871  62 ERGIFPMIIATIYMVIASIAVAAPLGIMTAIYLTEYAKVGSRLVKVIRFctesLAGIPSIIFGLFGMTFFvsilglGFSI 141
Cdd:COG0600   56 SGELWEHLLASLLRVLLGFALAALLGVPLGLLLGLSRLLRRLLDPLLVF----LRPIPPLALAPLLILWF------GIGE 125

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 880808871 142 LSGALTLSILILPVIIRTTEEALMAVPQTYREGSYGLGASKIYTIWRLILPSAMPGILTSVILSIG 207
Cdd:COG0600  126 ASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIALG 191
PhnE TIGR01097
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ...
 21-282 1.22e-06

phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]


Pssm-ID: 273441 [Multi-domain]  Cd Length: 250  Bit Score: 48.69  E-value: 1.22e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871   21 IWAAAAVTVGFLFWIIWYI------LSNGLQYVDW---NFITDDYTRTGEergIFPMIIATIYMVIASIAVAAPLGIMTA 91
Cdd:TIGR01097   6 RIWLLALLVALYVWAFALLgfdlarLLAGPGQMADllgRMFPPDWSYLPR---ILKALLETLAMAILGTVLAAVLAVPLA 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871   92 IYLTEYAKVGSRLVKVIRFCTESLAGIPSIIFGLFgmtfFVSILGLGfsILSGALTLSILILPVIIRTTEEALMAVPQTY 171
Cdd:TIGR01097  83 LLAARNITPSPWLYGLARLLLNFLRAIPELVWALI----FVAAVGLG--PFAGVLALAFHTVGFLGKLFAEAIEEVDPGP 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871  172 REGSYGLGASKIYTIWRLILPSAMPGILTSVILSIGRVIGESAPV-FLTAGMVARvpesvfdsgrtltvhLYKLTTELFt 250
Cdd:TIGR01097 157 VEALRATGASKLQVIRYGVLPQVLPQFLSYTLYRFEINVRAAAVLgLVGAGGIGL---------------ELDTAIGLF- 220

                         250       260       270
                  ....*....|....*....|....*....|..
gi 880808871  251 idEWNQAYGTATVLIVLVLLINMVTKLIARRF 282
Cdd:TIGR01097 221 --DYDEVSAIILVILVVVVIIDLISARLRRRL 250
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 163-281 1.39e-06

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 48.61  E-value: 1.39e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871 163 ALMAVPQTYREGSYGLGASKIYTIWRLILPSAMPGILTSVILSIGRVIGEsapvFLTAGMVARvpesvfDSGRTLTVHLY 242
Cdd:COG1176  176 ALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGA----FVTPALLGG------GKVLMIGNLIY 245

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 880808871 243 kltTELFTIDEWNQAYGTATVLIVLVLLINMVTKLIARR 281
Cdd:COG1176  246 ---QQFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRR 281
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
145-224 6.04e-06

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 46.67  E-value: 6.04e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871 145 ALTLSILILPVIIRTTEEALMAVPQTYREGSYGLGASKIYTIWRLILPSAMPGILTSVILSIGRVIGESAPVFLTAGMVA 224
Cdd:PRK10971 144 AVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIFIAGNIA 223
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 72-221 8.06e-06

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 45.23  E-value: 8.06e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871  72 TIYMVIASIAVAAPLGIMTAIYLTEYAKVGSRLVKVIRFcteSLAGIPSIIFGLFgMTFFVS------ILGLGFSILSGA 145
Cdd:NF038017   1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLN---TLMGLPPVVVGLI-VYLLLSrsgplgFLGLLYTPTAMI 76

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 880808871 146 LTLSILILPVIIRTTEEALMAVPQTYREGSYGLGASKIYTIWrLILPSAMPGILTSVILSIGRVIGESAPVFLTAG 221
Cdd:NF038017  77 IAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALW-TLLKEARFALLAAVLAGFGRAISEVGAVMMVGG 151
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 76-210 1.44e-05

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 45.49  E-value: 1.44e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871  76 VIASIAVAAPLGIMTAIYlteyakvGSRLVKVIRFCTESLAGIPSIIFGLFgmtfFVSILGLGFSILsgALTLSILILPV 155
Cdd:COG1173   89 VLIALVIGVLLGLLAGYF-------GGWVDAVLMRLVDVLLAFPSLLLAIA----LVAVLGPGLLNV--ILALGLTGWPG 155

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 880808871 156 IIRTTE-EALMAVPQTYREGSYGLGASKIYTIWRLILPSAMPGILTSVILSIGRVI 210
Cdd:COG1173  156 YARLVRaQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAI 211
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
63-214 1.46e-05

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 45.11  E-value: 1.46e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871  63 RGIFPMIIATIYMVIASIAVAAPLGIMtaIYLTEYAKV--GSRLVKVIRFCTESLAGIPSIIFGLFGMTFFVSILGLGFS 140
Cdd:PRK10782  11 RGVWETLAMTFVSGFFGFVIGLPVGVL--LYVTRPGQIiaNAKLYRTLSALVNIFRSIPFIILLVWMIPFTRVIVGTSIG 88

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 880808871 141 ILSGALTLSILILPVIIRTTEEALMAVPQTYREGSYGLGASKIYTIWRLILPSAMPGILTSVILSIGRVIGESA 214
Cdd:PRK10782  89 LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSA 162
PhnE COG3639
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ...
 23-199 4.18e-05

ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 442856 [Multi-domain]  Cd Length: 244  Bit Score: 43.92  E-value: 4.18e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871  23 AAAAVTVGFLFWIIWYILSNGLQYVDwNFITDDYTRTGEergIFPMIIATIYMVIASIAVAAPLGIMTAIYLTEYAKVGS 102
Cdd:COG3639   11 VWSLWGLEFDLGRLIDGLPNLADFLS-RFFPPDWSYLPD---LLSALLETLAIALLGTLLGAVLALPLAFLAARNLAPNP 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871 103 RLVKVIRFCTESLAGIPSIIFGLFgmtfFVSILGLGfsILSGALTLSILILPVIIRTTEEALMAVPQTYREGSYGLGASK 182
Cdd:COG3639   87 WVRLLARRLLNVLRAIPELVWALI----FVAAVGLG--PFAGVLALAIHTIGFLGKLFAEAIEEIDPGPVEALRATGASR 160

                        170
                 ....*....|....*..
gi 880808871 183 IYTIWRLILPSAMPGIL 199
Cdd:COG3639  161 LQVIRYGVLPQVLPQFL 177
cysT CHL00187
sulfate transport protein; Provisional
 124-221 8.87e-05

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 42.69  E-value: 8.87e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871 124 GLFGMTFFVSILGLGFSILSGALTLSILILPVIIRTTEEALMAVPQTYREGSYGLGASKIYTIWRLILPSAMPGILTSVI 203
Cdd:CHL00187 120 GWIGHLLSHLGIQIVFTKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLA 199

                         90
                 ....*....|....*...
gi 880808871 204 LSIGRVIGESAPVFLTAG 221
Cdd:CHL00187 200 LTFSRAIGEYGSIVIISS 217
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 71-211 1.50e-04

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 42.36  E-value: 1.50e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871  71 ATIYMVIASIAVAAPLGIMTAIYLTeyAKVGSRLVKVIRFCTESLAGIPSIIFGLFGMTFFVSILGL-----GFSILSG- 144
Cdd:COG0601   97 VTLELALLALLLALLIGIPLGILAA--LRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKLGWlpvsgRVSPWEDf 174

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 880808871 145 ----------ALTLSILILPVIIRTTEEALMAV-PQTYREGSYGLGASKIYTIWRLILPSAMPGILTSVILSIGRVIG 211
Cdd:COG0601  175 ldalrhlilpALTLALGSLAGIARLTRSSMLEVlGQDYVRTARAKGLSERRVLLRHALRNALIPVVTVLGLQLGGLLG 252
modB PRK09421
molybdate ABC transporter permease subunit;
126-212 2.80e-04

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 41.45  E-value: 2.80e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871 126 FGMTFfvsilglGFSILSGALTLSILILPVIIRTTEEALMAVPQTYREGSYGLGASKIYTIWRLILPSAMPGILTSVILS 205
Cdd:PRK09421  84 FGISF-------AFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLA 156


                 ....*..
gi 880808871 206 IGRVIGE 212
Cdd:PRK09421 157 FARSLGE 163
PRK11123 PRK11123
arginine ABC transporter permease ArtQ;
113-198 5.25e-04

arginine ABC transporter permease ArtQ;


Pssm-ID: 182979 [Multi-domain]  Cd Length: 238  Bit Score: 40.43  E-value: 5.25e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880808871 113 ESLAGIPSIIFGLFGMTFFVSILGLGFS-ILSGALTLSILILPVIIRTTEEALMAVPQTYREGSYGLGASKIYTIWRLIL 191
Cdd:PRK11123  75 LTLSDGFTLNLGFVQIPVQMDIENFEVSpFLCGVIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIFFRLVM 154

                         90
                 ....*....|.
gi 880808871 192 PS----AMPGI 198
Cdd:PRK11123 155 PQmwrhALPGL 165
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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