|
Name |
Accession |
Description |
Interval |
E-value |
| PilU |
COG5008 |
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures]; |
1-367 |
0e+00 |
|
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures];
Pssm-ID: 444032 Cd Length: 370 Bit Score: 662.18 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 1 MELNQILEGMLSQKASDLYITVDAPVLFRVDGELRPQGEK-LNLVQVAQLLDAMMDQDRRDEYQQTREANFAI-VRDFGR 78
Cdd:COG5008 1 MDLEDLLKLMVEKKASDLFITAGAPPSIKIDGKLTPLSQQpLTPEQVRELAYSIMNEEQREEFERTKECNFAIsLPGVGR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 79 FRVSAFFQRELPGAVIRRIETNIPTFEQLKLPDVLQDLSIAKRGLVLVVGATGSGKSTSMAAMTGYRNTNRSGHILTVED 158
Cdd:COG5008 81 FRVNAFRQRGSVGMVLRRIETEIPTLDELGLPPVLKDLIMEKRGLVLFVGATGSGKSTTLAAMIDHRNENSSGHILTIED 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 159 PIEFVHEHKKCIVTQREVGLDTESYEVALKNSLRQAPDMILIGEIRSRETMEYAMTFAETGHLCMATLHANNANQALERI 238
Cdd:COG5008 161 PIEFVHKHKKSIVTQREVGVDTESYEVALKNALRQAPDVILIGEIRDRETMEHAIAFAETGHLCLATLHANNANQALDRI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 239 LHLVPKEQKEQFLFDLSMNLRGVVAQQLIRDKNGsGRHGVFEILLNSPRVSDLIRRGELHELKATMAKSKEIGMQTFDQA 318
Cdd:COG5008 241 INFFPEERRPQLLMDLSLNLRAIVSQRLVPTKDG-GRVAAVEVLLNTPLIADLIRKGEIHEIKEAMEKSRELGMQTFDQA 319
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 880835576 319 LYDLVVAGKISEEDAFHSADSANDLRLMLK--TRRGDDDYGTGALAGVKID 367
Cdd:COG5008 320 LFRLYEAGKISYEEALRNADSANNLRLRIKlgSEGAAKADLDAGFDGLTLD 370
|
|
| pilT_fam |
TIGR01420 |
pilus retraction protein PilT; This model represents the PilT subfamily of proteins related to ... |
2-342 |
6.00e-154 |
|
pilus retraction protein PilT; This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. [Cell envelope, Surface structures, Cellular processes, Chemotaxis and motility]
Pssm-ID: 273613 Cd Length: 343 Bit Score: 436.75 E-value: 6.00e-154
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 2 ELNQILEGMLSQKASDLYITVDAPVLFRVDGELRPQG-EKLNLVQVAQLLDAMMDQDRRDEYQQTREANFAI-VRDFGRF 79
Cdd:TIGR01420 1 SLEEILREAVKLGASDIHLTAGAPPAMRIDGDLVRIEfEPLTPEDTQKLAREILSEKQREEFEENGELDFSFsLPGVGRF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 80 RVSAFFQRELPGAVIRRIETNIPTFEQLKLPDVLQDLSIAKRGLVLVVGATGSGKSTSMAAMTGYRNTNRSGHILTVEDP 159
Cdd:TIGR01420 81 RVNAFYQRGGVALVLRLIPSKIPTFEELGLPPVLRELAERPRGLILVTGPTGSGKSTTLASMIDYINKNKAYHIITIEDP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 160 IEFVHEHKKCIVTQREVGLDTESYEVALKNSLRQAPDMILIGEIRSRETMEYAMTFAETGHLCMATLHANNANQALERIL 239
Cdd:TIGR01420 161 IEYVHTNKRSLINQREVGEDTLSFANALRAALREDPDVILIGEMRDLETVELALTAAETGHLVFGTLHTNSAAQTIERII 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 240 HLVPKEQKEQFLFDLSMNLRGVVAQQLIRDKNGSGRHGVFEILLNSPRVSDLIRRGELHELKATMAKSKEIGMQTFDQAL 319
Cdd:TIGR01420 241 DVFPAEEQEQIRTQLAESLVAIISQRLLPKADGGGRVLAVEILINTPAVRNLIREGKTHQIKSLIQTGQQLGMQTFDQHL 320
|
330 340
....*....|....*....|...
gi 880835576 320 YDLVVAGKISEEDAFHSADSAND 342
Cdd:TIGR01420 321 AQLYKKGLITLEDALEAAPSPHE 343
|
|
| PilT |
cd01131 |
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein ... |
101-323 |
2.00e-131 |
|
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Pssm-ID: 410875 [Multi-domain] Cd Length: 223 Bit Score: 374.95 E-value: 2.00e-131
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 101 IPTFEQLKLPDVLQDLSIAKRGLVLVVGATGSGKSTSMAAMTGYRNTNRSGHILTVEDPIEFVHEHKKCIVTQREVGLDT 180
Cdd:cd01131 1 IPTFEELGLPPVLKDLALKPRGLVLVTGPTGSGKSTTLAAMIDYINETRSKHIITIEDPIEFVHKHKKSLINQREVGRDT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 181 ESYEVALKNSLRQAPDMILIGEIRSRETMEYAMTFAETGHLCMATLHANNANQALERILHLVPKEQKEQFLFDLSMNLRG 260
Cdd:cd01131 81 ESFAAALRAALREDPDVILVGEMRDLETIELALTAAETGHLVFSTLHTNSAAQTIDRIIDVFPPEQQEQVRIQLASSLRG 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 880835576 261 VVAQQLIRDKNGSGRHGVFEILLNSPRVSDLIRRGELHELKATMAKSKEIGMQTFDQALYDLV 323
Cdd:cd01131 161 VISQRLLPKKDGGGRVAAFEILINTPAIRNLIREGKTHQIPSLIQTGARDGMQTMDQSLYELY 223
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
4-269 |
4.87e-42 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 147.82 E-value: 4.87e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 4 NQILEGMLSQKASDLYITV---DAPVLFRVDGELR--PQGEKLNLVQVAQLLDAM--MDQDRRDEYQQTREAnFAIVRDF 76
Cdd:pfam00437 1 NLIPLEALDEGASDIHVEPperIVWIRFRVDGVLReiPFPDADALARLISRIKVMarLDISERRPPQDGRLP-LRIGGKG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 77 GRFRVSAFFQRELPGAVIRRIE-TNIP-TFEQLKL-PDVLQDLS--IAK-RGLVLVVGATGSGKSTSMAAMTGYRNTnRS 150
Cdd:pfam00437 80 VRVRVSTLPTAGGEKLVIRLLDpSNVAlSLDELGMtGAQDEALLefLRQpRGNILVTGPTGSGKTTTLYAALGELNT-RD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 151 GHILTVEDPIEFVHEHKKCIVTQREVGLDTESyevALKNSLRQAPDMILIGEIRSRETMEYAMTFAETGHLCMATLHANN 230
Cdd:pfam00437 159 ENIVTVEDPVEIQLEGINQVQLNARAGVTFAD---LLRAILRQDPDRIMVGEIRDLETAEIALQAANTGHLVLSTLHTNS 235
|
250 260 270
....*....|....*....|....*....|....*....
gi 880835576 231 ANQALERILHLVPKEqkeqflFDLSMNLRGVVAQQLIRD 269
Cdd:pfam00437 236 AAGALTRLQDMGVPP------FELASSLLLVIAQRLVRK 268
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
4-267 |
1.67e-41 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 146.44 E-value: 1.67e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 4 NQILEGMLSQKASDLYI---TVDAPVLFRVDGELRPQgEKLNLVQVAQLL-----DAMMD-QDRRdeyqqtREANFAIVR 74
Cdd:NF041000 1 EELIEEAIELRASDIHFlprEDGYQIKFRIGGGLIPY-RELSLEEGQRLIsyfkfLAGMDiGEKR------RPQSGAFTY 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 75 DFG----RFRVSA---FFQRElpGAVIR------RIETNIPTFEQLKLpdvLQDLSIAKRGLVLVVGATGSGKSTSMAAM 141
Cdd:NF041000 74 ELNeqqiSLRLSTvgdFLGRE--SLVIRllyqleQIKPQLFFPEQFQL---LKQLLQRRSGLILFSGPTGSGKTTTMYSL 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 142 TGYRNTNRsgHILTVEDPIEFVHEHkkciVTQREV----GLDtesYEVALKNSLRQAPDMILIGEIRSRETMEYAMTFAE 217
Cdd:NF041000 149 ARKLALNK--QVITIEDPVEIKEPN----FLQLQVnekaGMT---YDTLLKAALRHRPDILIIGEIRDAETAKAAIRAAL 219
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 880835576 218 TGHLCMATLHANNANQALERILHL-VPKEQKEQflfdlsmNLRGVVAQQLI 267
Cdd:NF041000 220 TGHLVLSTVHAKSAAGVIYRLLELgISKEELEQ-------TLIGISYQRLI 263
|
|
| PRK10436 |
PRK10436 |
hypothetical protein; Provisional |
3-268 |
6.50e-24 |
|
hypothetical protein; Provisional
Pssm-ID: 236694 Cd Length: 462 Bit Score: 102.31 E-value: 6.50e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 3 LNQILEGMLSQKASDLYITvdaP------VLFRVDG---ELRPQGEKLNLVQVAQLldAMMDQDRRDEYQQTREANFAiV 73
Cdd:PRK10436 88 INQTLQSALQKRASDIHFE---PaqnhyrIRLRIDGvlhPLPDPSPELGAALTARL--KVLGNLDIAERRLPQDGQFT-V 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 74 RDFGR---FRVSAFFQRELPGAVIRRIET--NIPTFEQLKLPDVLQDLSIAK----RGLVLVVGATGSGKSTSMAAMTGY 144
Cdd:PRK10436 162 ELAGNaysFRIATLPCRGGEKVVLRLLQQvqQALDLETLGMTPAQLAQFRQAlqqpQGLILVTGPTGSGKTVTLYSALQT 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 145 RNTNRSgHILTVEDPIEfvhehkkcI----VTQREV----GLDTESYEVALknsLRQAPDMILIGEIRSRETMEYAMTFA 216
Cdd:PRK10436 242 LNTAQI-NICSVEDPVE--------IplagINQTQIhpkaGLTFQRVLRAL---LRQDPDVIMVGEIRDGETAEIAIKAA 309
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 880835576 217 ETGHLCMATLHANNANQALERILHL-VPKeqkeqflFDLSMNLRGVVAQQLIR 268
Cdd:PRK10436 310 QTGHLVLSTLHTNSTSETLVRLQQMgIAR-------WMLASALKLVIAQRLVR 355
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PilU |
COG5008 |
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures]; |
1-367 |
0e+00 |
|
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures];
Pssm-ID: 444032 Cd Length: 370 Bit Score: 662.18 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 1 MELNQILEGMLSQKASDLYITVDAPVLFRVDGELRPQGEK-LNLVQVAQLLDAMMDQDRRDEYQQTREANFAI-VRDFGR 78
Cdd:COG5008 1 MDLEDLLKLMVEKKASDLFITAGAPPSIKIDGKLTPLSQQpLTPEQVRELAYSIMNEEQREEFERTKECNFAIsLPGVGR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 79 FRVSAFFQRELPGAVIRRIETNIPTFEQLKLPDVLQDLSIAKRGLVLVVGATGSGKSTSMAAMTGYRNTNRSGHILTVED 158
Cdd:COG5008 81 FRVNAFRQRGSVGMVLRRIETEIPTLDELGLPPVLKDLIMEKRGLVLFVGATGSGKSTTLAAMIDHRNENSSGHILTIED 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 159 PIEFVHEHKKCIVTQREVGLDTESYEVALKNSLRQAPDMILIGEIRSRETMEYAMTFAETGHLCMATLHANNANQALERI 238
Cdd:COG5008 161 PIEFVHKHKKSIVTQREVGVDTESYEVALKNALRQAPDVILIGEIRDRETMEHAIAFAETGHLCLATLHANNANQALDRI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 239 LHLVPKEQKEQFLFDLSMNLRGVVAQQLIRDKNGsGRHGVFEILLNSPRVSDLIRRGELHELKATMAKSKEIGMQTFDQA 318
Cdd:COG5008 241 INFFPEERRPQLLMDLSLNLRAIVSQRLVPTKDG-GRVAAVEVLLNTPLIADLIRKGEIHEIKEAMEKSRELGMQTFDQA 319
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 880835576 319 LYDLVVAGKISEEDAFHSADSANDLRLMLK--TRRGDDDYGTGALAGVKID 367
Cdd:COG5008 320 LFRLYEAGKISYEEALRNADSANNLRLRIKlgSEGAAKADLDAGFDGLTLD 370
|
|
| PilT |
COG2805 |
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular ... |
1-337 |
5.83e-169 |
|
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular structures];
Pssm-ID: 442056 Cd Length: 342 Bit Score: 474.58 E-value: 5.83e-169
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 1 MELNQILEGMLSQKASDLYITVDAPVLFRVDGELRP-QGEKLNLVQVAQLLDAMMDQDRRDEYQQTREANFAI-VRDFGR 78
Cdd:COG2805 3 MDLDELLKLAVEQGASDLHLTVGSPPMLRIDGELVPlDDPPLTPEDLEALLKEILTEEQRERLEEEGELDFSYsLPGLGR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 79 FRVSAFFQRELPGAVIRRIETNIPTFEQLKLPDVLQDLSIAKRGLVLVVGATGSGKSTSMAAMTGYRNTNRSGHILTVED 158
Cdd:COG2805 83 FRVNIFRQRGGVAAVLRLIPSEIPTLEELGLPPVLKELAELPRGLVLVTGPTGSGKSTTLAAMIDYINETRAKHIITIED 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 159 PIEFVHEHKKCIVTQREVGLDTESYEVALKNSLRQAPDMILIGEIRSRETMEYAMTFAETGHLCMATLHANNANQALERI 238
Cdd:COG2805 163 PIEFVHKHKKSLINQREVGRDTPSFANALRAALREDPDVILVGEMRDLETIEAALTAAETGHLVFATLHTNSAAQTIDRI 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 239 LHLVPKEQKEQFLFDLSMNLRGVVAQQLIRDKNGSGRHGVFEILLNSPRVSDLIRRGELHELKATMAKSKEIGMQTFDQA 318
Cdd:COG2805 243 IDVFPPEEQAQIRSQLAESLRGVISQRLLPRADGGGRVAAREILVNTPAVRNLIREGKTHQIPSLIQTGKKLGMQTMDQS 322
|
330
....*....|....*....
gi 880835576 319 LYDLVVAGKISEEDAFHSA 337
Cdd:COG2805 323 LAELVKEGLITEETALAYA 341
|
|
| pilT_fam |
TIGR01420 |
pilus retraction protein PilT; This model represents the PilT subfamily of proteins related to ... |
2-342 |
6.00e-154 |
|
pilus retraction protein PilT; This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. [Cell envelope, Surface structures, Cellular processes, Chemotaxis and motility]
Pssm-ID: 273613 Cd Length: 343 Bit Score: 436.75 E-value: 6.00e-154
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 2 ELNQILEGMLSQKASDLYITVDAPVLFRVDGELRPQG-EKLNLVQVAQLLDAMMDQDRRDEYQQTREANFAI-VRDFGRF 79
Cdd:TIGR01420 1 SLEEILREAVKLGASDIHLTAGAPPAMRIDGDLVRIEfEPLTPEDTQKLAREILSEKQREEFEENGELDFSFsLPGVGRF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 80 RVSAFFQRELPGAVIRRIETNIPTFEQLKLPDVLQDLSIAKRGLVLVVGATGSGKSTSMAAMTGYRNTNRSGHILTVEDP 159
Cdd:TIGR01420 81 RVNAFYQRGGVALVLRLIPSKIPTFEELGLPPVLRELAERPRGLILVTGPTGSGKSTTLASMIDYINKNKAYHIITIEDP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 160 IEFVHEHKKCIVTQREVGLDTESYEVALKNSLRQAPDMILIGEIRSRETMEYAMTFAETGHLCMATLHANNANQALERIL 239
Cdd:TIGR01420 161 IEYVHTNKRSLINQREVGEDTLSFANALRAALREDPDVILIGEMRDLETVELALTAAETGHLVFGTLHTNSAAQTIERII 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 240 HLVPKEQKEQFLFDLSMNLRGVVAQQLIRDKNGSGRHGVFEILLNSPRVSDLIRRGELHELKATMAKSKEIGMQTFDQAL 319
Cdd:TIGR01420 241 DVFPAEEQEQIRTQLAESLVAIISQRLLPKADGGGRVLAVEILINTPAVRNLIREGKTHQIKSLIQTGQQLGMQTFDQHL 320
|
330 340
....*....|....*....|...
gi 880835576 320 YDLVVAGKISEEDAFHSADSAND 342
Cdd:TIGR01420 321 AQLYKKGLITLEDALEAAPSPHE 343
|
|
| PilT |
cd01131 |
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein ... |
101-323 |
2.00e-131 |
|
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Pssm-ID: 410875 [Multi-domain] Cd Length: 223 Bit Score: 374.95 E-value: 2.00e-131
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 101 IPTFEQLKLPDVLQDLSIAKRGLVLVVGATGSGKSTSMAAMTGYRNTNRSGHILTVEDPIEFVHEHKKCIVTQREVGLDT 180
Cdd:cd01131 1 IPTFEELGLPPVLKDLALKPRGLVLVTGPTGSGKSTTLAAMIDYINETRSKHIITIEDPIEFVHKHKKSLINQREVGRDT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 181 ESYEVALKNSLRQAPDMILIGEIRSRETMEYAMTFAETGHLCMATLHANNANQALERILHLVPKEQKEQFLFDLSMNLRG 260
Cdd:cd01131 81 ESFAAALRAALREDPDVILVGEMRDLETIELALTAAETGHLVFSTLHTNSAAQTIDRIIDVFPPEQQEQVRIQLASSLRG 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 880835576 261 VVAQQLIRDKNGSGRHGVFEILLNSPRVSDLIRRGELHELKATMAKSKEIGMQTFDQALYDLV 323
Cdd:cd01131 161 VISQRLLPKKDGGGRVAAFEILINTPAIRNLIREGKTHQIPSLIQTGARDGMQTMDQSLYELY 223
|
|
| PulE-GspE-like |
cd01129 |
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ... |
111-282 |
1.05e-47 |
|
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.
Pssm-ID: 410873 [Multi-domain] Cd Length: 159 Bit Score: 158.80 E-value: 1.05e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 111 DVLQDLSIAKRGLVLVVGATGSGKSTSMAAMTGYRNTNRsGHILTVEDPIEFVHEHkkciVTQREVGLDTE-SYEVALKN 189
Cdd:cd01129 1 ARLRRLIKRPHGLILVTGPTGSGKTTTLYAMLRELNGPE-RNIITIEDPVEYQIPG----INQSQVNEKIGlTFADALRA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 190 SLRQAPDMILIGEIRSRETMEYAMTFAETGHLCMATLHANNANQALERILHL-VPKeqkeqflFDLSMNLRGVVAQQLIr 268
Cdd:cd01129 76 ILRQDPDIIMVGEIRDAETAEIAIRAALTGHLVLSTLHTNDALGAITRLLDMgIEP-------FLLASALRGVIAQRLV- 147
|
170
....*....|....
gi 880835576 269 dkngsGRHGVFEIL 282
Cdd:cd01129 148 -----GRTAIAEVL 156
|
|
| PulE |
COG2804 |
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ... |
3-331 |
3.94e-45 |
|
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442055 [Multi-domain] Cd Length: 561 Bit Score: 162.67 E-value: 3.94e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 3 LNQILEGMLSQKASDLYITVDAP---VLFRVDGELRPQgEKLNLVQVAQLLD-----AMMDQDRRDEYQQTReanFAIVR 74
Cdd:COG2804 183 VNAILEDAIKEGASDIHIEPYEKrlrVRFRIDGVLREV-LRLPKSLAPALVSrikimANLDIAERRLPQDGR---IKLRL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 75 DfGR---FRVSAffqreLPG-----AVIRrI---ETNIPTFEQLKL-PDVLQDL-SIAKR--GLVLVVGATGSGKSTSMA 139
Cdd:COG2804 259 G-GReidLRVST-----LPTvygekVVLR-IldkSAALLDLEQLGFsPDQLERLrRLIRRphGIILVTGPTGSGKTTTLY 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 140 AMTGYRNTNRSgHILTVEDPIEFVHEHkkciVTQ----REVGLDtesYEVALKNSLRQAPDMILIGEIRSRETMEYAMTF 215
Cdd:COG2804 332 AALNELNTPER-NIITVEDPVEYQLPG----INQvqvnPKIGLT---FASALRSILRQDPDVIMVGEIRDLETAEIAVQA 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 216 AETGHLCMATLHANNANQALERILHL-VpkeqkEQFLfdLSMNLRGVVAQQLIR-------------------------- 268
Cdd:COG2804 404 ALTGHLVLSTLHTNDAPSAITRLLDMgV-----EPFL--LASSLLGVLAQRLVRrlcphckepyepdpeelerlglppee 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 269 ------------DK-NGSG---RHGVFEILLNSPRVSDLIRRGE-LHELKAtMAKSKeiGMQTFDQALYDLVVAGKIS-E 330
Cdd:COG2804 477 lapltfyrgvgcEHcNGTGykgRTGIYELLVIDDELRELIAEGAsAAELRE-AARKE--GMRTLREDGLEKVLQGITTlE 553
|
.
gi 880835576 331 E 331
Cdd:COG2804 554 E 554
|
|
| DotB_TraJ |
cd19516 |
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of ... |
113-282 |
1.50e-44 |
|
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of the type IVb secretion (T4bS) system, also known as the dot/icm system, and is the main energy supplier of the secretion system. It is an ATPase, similar to the VirB11 component of the T4aS systems. This family also includes Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ encoded on the tra (transfer) operon.
Pssm-ID: 410924 [Multi-domain] Cd Length: 179 Bit Score: 151.38 E-value: 1.50e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 113 LQDLSIAKRGLVLVVGATGSGKSTSMAAMTGY--RNTNRSGHILTVEDPIEFVH---EHKKCIVTQREVGLDTESYEVAL 187
Cdd:cd19516 3 LVEALFPREGLVYVAGATGSGKSTLLAAIYRYilENDPPDRKIITYEDPIEFVYdgiKSKHSIIVQSQIPRHFKSFAKAV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 188 KNSLRQAPDMILIGEIRSRETMEYAMTFAETGHLCMATLHANNANQALERILHLVPKEQKEQFLFDLSMNLRGVVAQQLI 267
Cdd:cd19516 83 REALRRKPSLIGVGELRDQETISAAVEASLTGHPVYSTVHTKSVAETIRRLISLFPPEERDAAAYDLLSTLRFIIVQRLV 162
|
170
....*....|....*
gi 880835576 268 RdKNGSGRHGVFEIL 282
Cdd:cd19516 163 R-TTDGKRVAVREYL 176
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
4-269 |
4.87e-42 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 147.82 E-value: 4.87e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 4 NQILEGMLSQKASDLYITV---DAPVLFRVDGELR--PQGEKLNLVQVAQLLDAM--MDQDRRDEYQQTREAnFAIVRDF 76
Cdd:pfam00437 1 NLIPLEALDEGASDIHVEPperIVWIRFRVDGVLReiPFPDADALARLISRIKVMarLDISERRPPQDGRLP-LRIGGKG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 77 GRFRVSAFFQRELPGAVIRRIE-TNIP-TFEQLKL-PDVLQDLS--IAK-RGLVLVVGATGSGKSTSMAAMTGYRNTnRS 150
Cdd:pfam00437 80 VRVRVSTLPTAGGEKLVIRLLDpSNVAlSLDELGMtGAQDEALLefLRQpRGNILVTGPTGSGKTTTLYAALGELNT-RD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 151 GHILTVEDPIEFVHEHKKCIVTQREVGLDTESyevALKNSLRQAPDMILIGEIRSRETMEYAMTFAETGHLCMATLHANN 230
Cdd:pfam00437 159 ENIVTVEDPVEIQLEGINQVQLNARAGVTFAD---LLRAILRQDPDRIMVGEIRDLETAEIALQAANTGHLVLSTLHTNS 235
|
250 260 270
....*....|....*....|....*....|....*....
gi 880835576 231 ANQALERILHLVPKEqkeqflFDLSMNLRGVVAQQLIRD 269
Cdd:pfam00437 236 AAGALTRLQDMGVPP------FELASSLLLVIAQRLVRK 268
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
4-267 |
1.67e-41 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 146.44 E-value: 1.67e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 4 NQILEGMLSQKASDLYI---TVDAPVLFRVDGELRPQgEKLNLVQVAQLL-----DAMMD-QDRRdeyqqtREANFAIVR 74
Cdd:NF041000 1 EELIEEAIELRASDIHFlprEDGYQIKFRIGGGLIPY-RELSLEEGQRLIsyfkfLAGMDiGEKR------RPQSGAFTY 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 75 DFG----RFRVSA---FFQRElpGAVIR------RIETNIPTFEQLKLpdvLQDLSIAKRGLVLVVGATGSGKSTSMAAM 141
Cdd:NF041000 74 ELNeqqiSLRLSTvgdFLGRE--SLVIRllyqleQIKPQLFFPEQFQL---LKQLLQRRSGLILFSGPTGSGKTTTMYSL 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 142 TGYRNTNRsgHILTVEDPIEFVHEHkkciVTQREV----GLDtesYEVALKNSLRQAPDMILIGEIRSRETMEYAMTFAE 217
Cdd:NF041000 149 ARKLALNK--QVITIEDPVEIKEPN----FLQLQVnekaGMT---YDTLLKAALRHRPDILIIGEIRDAETAKAAIRAAL 219
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 880835576 218 TGHLCMATLHANNANQALERILHL-VPKEQKEQflfdlsmNLRGVVAQQLI 267
Cdd:NF041000 220 TGHLVLSTVHAKSAAGVIYRLLELgISKEELEQ-------TLIGISYQRLI 263
|
|
| plasmid_TraJ |
TIGR02525 |
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated ... |
13-283 |
7.09e-40 |
|
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). [Mobile and extrachromosomal element functions, Plasmid functions]
Pssm-ID: 131577 [Multi-domain] Cd Length: 372 Bit Score: 144.95 E-value: 7.09e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 13 QKASDLYITVDAPVLFRVDGELRPQG----EKLNLVQvaqLLDAMMDQDRRDEYQQTREANFAIVRD------FG----- 77
Cdd:TIGR02525 22 HEVSDIHLQGGSPIVVERHGRQVPASsfplDNLELER---LVDEVFGPEIKPTVKSGAPVDRAIQLRgdengrYGlgrge 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 78 RFRVSAFFQRELPGAV-------IRRIETNIPTFEQLKL-PDVLQDLsIAKRGLVLVVGATGSGKSTSMAAMtgYR---N 146
Cdd:TIGR02525 99 RVRFRCNFIQATIGKLetaisltLRVIPSDIPDLKQMGIePDLFNSL-LPAAGLGLICGETGSGKSTLAASI--YQhcgE 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 147 TNRSGHILTVEDPIEFVHEHKKCIV--TQREVGLDTESYEVALKNSLRQAPDMILIGEIRSRETMEYAMTFAETGHLCMA 224
Cdd:TIGR02525 176 TYPDRKIVTYEDPIEYILGSPDDLLppAQSQIGRDVDSFANGIRLALRRAPKIIGVGEIRDLETFQAAVLAGQSGHFCLG 255
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 880835576 225 TLHANNANQALERILHLVPKEQKEQFLFDLSMNLRGVVAQQLIRDKNGsGRHGVFEILL 283
Cdd:TIGR02525 256 TLHVKSPGEAISRCLQMYPPEMREAAAFDLLSILQYIIVQRLLRTTDG-KRQAVREYIV 313
|
|
| PRK10436 |
PRK10436 |
hypothetical protein; Provisional |
3-268 |
6.50e-24 |
|
hypothetical protein; Provisional
Pssm-ID: 236694 Cd Length: 462 Bit Score: 102.31 E-value: 6.50e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 3 LNQILEGMLSQKASDLYITvdaP------VLFRVDG---ELRPQGEKLNLVQVAQLldAMMDQDRRDEYQQTREANFAiV 73
Cdd:PRK10436 88 INQTLQSALQKRASDIHFE---PaqnhyrIRLRIDGvlhPLPDPSPELGAALTARL--KVLGNLDIAERRLPQDGQFT-V 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 74 RDFGR---FRVSAFFQRELPGAVIRRIET--NIPTFEQLKLPDVLQDLSIAK----RGLVLVVGATGSGKSTSMAAMTGY 144
Cdd:PRK10436 162 ELAGNaysFRIATLPCRGGEKVVLRLLQQvqQALDLETLGMTPAQLAQFRQAlqqpQGLILVTGPTGSGKTVTLYSALQT 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 145 RNTNRSgHILTVEDPIEfvhehkkcI----VTQREV----GLDTESYEVALknsLRQAPDMILIGEIRSRETMEYAMTFA 216
Cdd:PRK10436 242 LNTAQI-NICSVEDPVE--------IplagINQTQIhpkaGLTFQRVLRAL---LRQDPDVIMVGEIRDGETAEIAIKAA 309
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 880835576 217 ETGHLCMATLHANNANQALERILHL-VPKeqkeqflFDLSMNLRGVVAQQLIR 268
Cdd:PRK10436 310 QTGHLVLSTLHTNSTSETLVRLQQMgIAR-------WMLASALKLVIAQRLVR 355
|
|
| type_II_IV_secretion_ATPases |
cd19477 |
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP ... |
111-268 |
9.74e-21 |
|
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410885 [Multi-domain] Cd Length: 168 Bit Score: 88.22 E-value: 9.74e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 111 DVLQDLsIAKRGLVLVVGATGSGKSTSMAAMTGYRNTNRsgHILTVEDPIEFVHEHKKCIvTQREVGLDTESYEvALKNS 190
Cdd:cd19477 1 SAIKDG-IAIGKNVIVCGGTGSGKTTYIKSILEFIPKEE--RIISIEDTEEIVFKHHKNY-TQLFFGGNITSAD-CLKSC 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 191 LRQAPDMILIGEIRSrETMEYAMTFAETGH-LCMATLHANNANQALERI------LHLVPKEQKEQFLFDLSMNLRGVVA 263
Cdd:cd19477 76 LRQRPDRIILGELRS-SEAYDFYNVLCSGHkGTLTTLHAGSSEEAFIRLan*sssNSAARNIKFESLIEGFKDLIDGIVH 154
|
....*
gi 880835576 264 QQLIR 268
Cdd:cd19477 155 INHHK 159
|
|
| VirB11-like_ATPase |
cd01130 |
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, ... |
124-242 |
1.70e-20 |
|
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir (virulence) proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the bacterial Ti (tumor-inducing)-plasmid into plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11-related ATPases include Sulfolobus acidocaldarius FlaI, which plays key roles in archaellum (archaeal flagellum) assembly and motility functions, and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Pssm-ID: 410874 [Multi-domain] Cd Length: 177 Bit Score: 87.60 E-value: 1.70e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 124 VLVVGATGSGKSTSMAAMTGYRNTNRsgHILTVEDPIEFV--HEHKKCIVTQREVGLDTE-SYEVALKNSLRQAPDMILI 200
Cdd:cd01130 15 ILISGGTGSGKTTLLNALLSFIPPDE--RIVTIEDTRELQlpHPNVVHLLTRPGGGEKGEvTMADLLKAALRMRPDRIIV 92
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 880835576 201 GEIRSRETMEY--AMTfaeTGHL-CMATLHANNANQALERILHLV 242
Cdd:cd01130 93 GEVRGGEAYDMlqAMN---TGHPgSITTIHANSAEDAIDRLATLV 134
|
|
| VirB11 |
COG0630 |
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell ... |
116-292 |
8.92e-18 |
|
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440395 [Multi-domain] Cd Length: 462 Bit Score: 84.36 E-value: 8.92e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 116 LSIAKRGLVLVVGATGSGKSTSMAAMTGYRNTNRSghILTVED-P-IEFVHEHKKCIVTqREvGLDTESYEV----ALKN 189
Cdd:COG0630 285 LLLENGKSVLVAGGTASGKTTLLNALLSFIPPDAK--IVTIEDtReLNLPHENWISLVT-RE-SFGGEEGDVtmfdLLKA 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 190 SLRQAPDMILIGEIRSREtmeyAMTFAE---TGHLCMATLHANNANQALERILHL---VPKEQKEqflfdlSMNLrgVVA 263
Cdd:COG0630 361 ALRQRPDYIVVGEVRGEE----AYTLFQamaTGHGVLSTFHADSVESAINRLTSPpinVPRTLLQ------ALDL--VVF 428
|
170 180 190
....*....|....*....|....*....|.
gi 880835576 264 QQLIRDKNGSGR--HGVFEILLNSPRVSDLI 292
Cdd:COG0630 429 QKRVRVGGKRVRrvTSIVEIVGYDPETGEIR 459
|
|
| CpaF |
COG4962 |
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and ... |
94-238 |
2.95e-16 |
|
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 443988 [Multi-domain] Cd Length: 386 Bit Score: 79.44 E-value: 2.95e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 94 IRRIETNIPTFEQL-KL----PDVLQDLSIA-KRGL-VLVVGATGSGKSTSMAAMTGY-RNTNRsghILTVEDPIE--FV 163
Cdd:COG4962 148 IRKFRKRPLTLEDLvALgsltPEMAEFLRAAvRARLnILVSGGTGSGKTTLLNALSGFiPPDER---IVTIEDAAElqLQ 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 164 HEH------------KKCIVTQREVgldtesyevaLKNSLRQAPDMILIGEIRSRETMEY--AMTfaeTGHL-CMATLHA 228
Cdd:COG4962 225 HPHvvrletrppnveGAGEVTLRDL----------VRNALRMRPDRIIVGEVRGAEALDMlqAMN---TGHDgSMSTLHA 291
|
170
....*....|
gi 880835576 229 NNANQALERI 238
Cdd:COG4962 292 NSARDALARL 301
|
|
| PRK13894 |
PRK13894 |
conjugal transfer ATPase TrbB; Provisional |
97-242 |
2.37e-13 |
|
conjugal transfer ATPase TrbB; Provisional
Pssm-ID: 184377 Cd Length: 319 Bit Score: 70.15 E-value: 2.37e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 97 IETNIPTFEQlklPDVLQDLSIAKRGlVLVVGATGSGKSTSMAA----MTGYRNTNRsghILTVEDPIEFVHEHKKCIvt 172
Cdd:PRK13894 128 VERGIMTAAQ---REAIIAAVRAHRN-ILVIGGTGSGKTTLVNAiineMVIQDPTER---VFIIEDTGEIQCAAENYV-- 198
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 880835576 173 QREVGLDTeSYEVALKNSLRQAPDMILIGEIRSRETMEYAMTFaETGHL-CMATLHANNANQALERILHLV 242
Cdd:PRK13894 199 QYHTSIDV-NMTALLKTTLRMRPDRILVGEVRGPEALDLLMAW-NTGHEgGAATLHANNAKAGLDRLKSLI 267
|
|
| PRK13851 |
PRK13851 |
type IV secretion system protein VirB11; Provisional |
121-242 |
7.87e-10 |
|
type IV secretion system protein VirB11; Provisional
Pssm-ID: 172375 Cd Length: 344 Bit Score: 59.53 E-value: 7.87e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 121 RGLVLVVGATGSGKSTsmAAMTGYRNTNRSGHILTVEDPIEFV--HE-HKKCIVTQREVGLDTESYEVALKNSLRQAPDM 197
Cdd:PRK13851 162 RLTMLLCGPTGSGKTT--MSKTLISAIPPQERLITIEDTLELVipHEnHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDR 239
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 880835576 198 ILIGEIRSRETMEYaMTFAETGHL-CMATLHANNANQALERILHLV 242
Cdd:PRK13851 240 ILLGEMRDDAAWAY-LSEVVSGHPgSISTIHGANPVQGFKKLFSLV 284
|
|
| PRK13833 |
PRK13833 |
conjugal transfer protein TrbB; Provisional |
117-242 |
2.93e-05 |
|
conjugal transfer protein TrbB; Provisional
Pssm-ID: 172360 [Multi-domain] Cd Length: 323 Bit Score: 45.56 E-value: 2.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 117 SIAKRGLVLVVGATGSGKSTSMAAMTGYRNTNRSGHILTV-EDPIEFvhehkKCiVTQREVGL---DTESYEVALKNSLR 192
Cdd:PRK13833 140 AIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVIlEDTAEI-----QC-AAENAVALhtsDTVDMARLLKSTMR 213
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 880835576 193 QAPDMILIGEIRSREtmeyAMTFAE---TGHLC-MATLHANNANQALERILHLV 242
Cdd:PRK13833 214 LRPDRIIVGEVRDGA----ALTLLKawnTGHPGgVTTIHSNTAMSALRRLEQLT 263
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
96-144 |
2.85e-04 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 42.78 E-value: 2.85e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 880835576 96 RIETNIPTFEQLKLPDVLQD--LSIAKRGLVLVVGATGSGKSTSMAAMTGY 144
Cdd:PRK10790 340 RIDIDNVSFAYRDDNLVLQNinLSVPSRGFVALVGHTGSGKSTLASLLMGY 390
|
|
| PRK13900 |
PRK13900 |
type IV secretion system ATPase VirB11; Provisional |
106-283 |
3.71e-04 |
|
type IV secretion system ATPase VirB11; Provisional
Pssm-ID: 184381 Cd Length: 332 Bit Score: 42.05 E-value: 3.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 106 QLKLPDVLQDLSIAKRGLVlVVGATGSGKST-SMAAMTGYRNTNRsghILTVEDPIEFV---HEHK-KCIVTQREVGLDT 180
Cdd:PRK13900 146 EKKIKEFLEHAVISKKNII-ISGGTSTGKTTfTNAALREIPAIER---LITVEDAREIVlsnHPNRvHLLASKGGQGRAK 221
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90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 880835576 181 ESYEVALKNSLRQAPDMILIGEIRSRETMEYaMTFAETGHL-CMATLHANNANQALERILHLV-------PKEQKEQFLf 252
Cdd:PRK13900 222 VTTQDLIEACLRLRPDRIIVGELRGAEAFSF-LRAINTGHPgSISTLHADSPAMAIEQLKLMVmqaglgmPPDQIKKYI- 299
|
170 180 190
....*....|....*....|....*....|.
gi 880835576 253 dlsMNLRGVVAqQLIRdkNGSGRHGVFEILL 283
Cdd:PRK13900 300 ---LNVVDIVV-QLKR--GSGGKRYVSEIYF 324
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|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
105-143 |
5.34e-04 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 40.92 E-value: 5.34e-04
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 880835576 105 EQLKLPDVLQDLSI-AKRG-LVLVVGATGSGKSTSMAAMTG 143
Cdd:cd03250 13 GEQETSFTLKDINLeVPKGeLVAIVGPVGSGKSSLLSALLG 53
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|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
115-154 |
2.31e-03 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 38.99 E-value: 2.31e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 880835576 115 DLSIAKRGLVLVVGATGSGKSTSMAAMTGYRNTNrSGHIL 154
Cdd:cd03225 21 SLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT-SGEVL 59
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|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
108-154 |
3.15e-03 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 38.13 E-value: 3.15e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 880835576 108 KLPDVLQDLS--IAKRGLVLVVGATGSGKSTSMAAMTG-YRNTnrSGHIL 154
Cdd:cd03228 13 RPKPVLKDVSltIKPGEKVAIVGPSGSGKSTLLKLLLRlYDPT--SGEIL 60
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|
| AAA_29 |
pfam13555 |
P-loop containing region of AAA domain; |
114-142 |
4.31e-03 |
|
P-loop containing region of AAA domain;
Pssm-ID: 433304 [Multi-domain] Cd Length: 61 Bit Score: 35.27 E-value: 4.31e-03
10 20
....*....|....*....|....*....
gi 880835576 114 QDLSIAKRGLVLVVGATGSGKSTSMAAMT 142
Cdd:pfam13555 15 HTIPIDPRGNTLLTGPSGSGKSTLLDAIQ 43
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