Na+/H+ antiporter NhaC family protein similar to the secondary Na+/H+ antiporter NhaC and to archaeabacterial argininie/ornithine antiporter ArcD, which is responsible for uptake of arginine from the medium
Na+/H+ antiporter NhaC; A single member of the NhaC family, a protein from Bacillus firmus, ...
7-470
4.42e-141
Na+/H+ antiporter NhaC; A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterized.It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria. Intriguingly, archaeal homolog ArcD (just outside boundaries of family) has been identified as an arginine/ornithine antiporter. [Transport and binding proteins, Cations and iron carrying compounds]
The actual alignment was detected with superfamily member TIGR00931:
Pssm-ID: 188097 Cd Length: 454 Bit Score: 413.04 E-value: 4.42e-141
Na+/H+ antiporter NhaC; A single member of the NhaC family, a protein from Bacillus firmus, ...
7-470
4.42e-141
Na+/H+ antiporter NhaC; A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterized.It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria. Intriguingly, archaeal homolog ArcD (just outside boundaries of family) has been identified as an arginine/ornithine antiporter. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 188097 Cd Length: 454 Bit Score: 413.04 E-value: 4.42e-141
Na+/H+ antiporter NhaC; A single member of the NhaC family, a protein from Bacillus firmus, ...
7-470
4.42e-141
Na+/H+ antiporter NhaC; A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterized.It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria. Intriguingly, archaeal homolog ArcD (just outside boundaries of family) has been identified as an arginine/ornithine antiporter. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 188097 Cd Length: 454 Bit Score: 413.04 E-value: 4.42e-141
Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
References:
Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
of the residues that compose this conserved feature have been mapped to the query sequence.
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Functional characterization of the conserved domain architecture found on the query.
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(labeled illustration) Standard Display shows only the best scoring domain model from each source, in each hit category listed below for each region on the query sequence.
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