NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|880898553|ref|WP_048670026|]
View 

Rib/alpha-like domain-containing protein, partial [Enterococcus sp. 255_ESPC]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Rib pfam08428
Rib domain; The region featured in this family is found repeated in a number of bacterial ...
 68-143 1.13e-23

Rib domain; The region featured in this family is found repeated in a number of bacterial surface proteins, such as Rib and alpha. These are expressed by group B streptococci, and Rib is thought to confer protective immunity.


:

Pssm-ID: 462474 [Multi-domain]  Cd Length: 76  Bit Score: 89.98  E-value: 1.13e-23
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 880898553   68 DADKYTPEGQKVTTELNKEPDASEGIKNKKDLPKDAKYTWKEKVDISTAGNKKGTVVVTYSDGSSDEVEVDVTVTD 143
Cdd:pfam08428   1 DADKYTPKGKDITVEVGETPDAEDGIKNKDDLPEGTKYTWKTPPDTTTPGDKTGTVVVTYPDGSTDEVEVTVTVTD 76
rib_alpha super family cl46943
Rib/alpha/Esp surface antigen repeat; Sequences in this family are tandem repeats of about 79 ...
 157-219 1.54e-14

Rib/alpha/Esp surface antigen repeat; Sequences in this family are tandem repeats of about 79 amino acids, present in up to 14 copies in a protein and highly identical, even at the DNA level, within each protein. Sequences with these repeats are found in the Rib and alpha surface antigens of group B Streptococcus, Esp of Enterococcus faecalis, and related proteins of Lactobacillus. The repeat lacks Cys residues. Most members of this protein family also have the cell wall anchor motif LPXTG shared by many staphyloccal and streptococcal surface antigens.


The actual alignment was detected with superfamily member TIGR02331:

Pssm-ID: 131384 [Multi-domain]  Cd Length: 80  Bit Score: 66.05  E-value: 1.54e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 880898553  157 GEKVEIGGKVDLTDNVTNLPTLPQGTTVTDVTPGgTIDTNTPGNYEGVIEVTYPDGTKDTVKV 219
Cdd:TIGR02331   1 GETVEVGGTPDASDSITNLVDLPDGTTYVWKTVN-TPDTNTPGDKPAVVVVTYPDGTKDTVPV 62
 
Name Accession Description Interval E-value
Rib pfam08428
Rib domain; The region featured in this family is found repeated in a number of bacterial ...
 68-143 1.13e-23

Rib domain; The region featured in this family is found repeated in a number of bacterial surface proteins, such as Rib and alpha. These are expressed by group B streptococci, and Rib is thought to confer protective immunity.


Pssm-ID: 462474 [Multi-domain]  Cd Length: 76  Bit Score: 89.98  E-value: 1.13e-23
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 880898553   68 DADKYTPEGQKVTTELNKEPDASEGIKNKKDLPKDAKYTWKEKVDISTAGNKKGTVVVTYSDGSSDEVEVDVTVTD 143
Cdd:pfam08428   1 DADKYTPKGKDITVEVGETPDAEDGIKNKDDLPEGTKYTWKTPPDTTTPGDKTGTVVVTYPDGSTDEVEVTVTVTD 76
rib_alpha TIGR02331
Rib/alpha/Esp surface antigen repeat; Sequences in this family are tandem repeats of about 79 ...
 79-151 8.50e-16

Rib/alpha/Esp surface antigen repeat; Sequences in this family are tandem repeats of about 79 amino acids, present in up to 14 copies in a protein and highly identical, even at the DNA level, within each protein. Sequences with these repeats are found in the Rib and alpha surface antigens of group B Streptococcus, Esp of Enterococcus faecalis, and related proteins of Lactobacillus. The repeat lacks Cys residues. Most members of this protein family also have the cell wall anchor motif LPXTG shared by many staphyloccal and streptococcal surface antigens.


Pssm-ID: 131384 [Multi-domain]  Cd Length: 80  Bit Score: 69.52  E-value: 8.50e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 880898553   79 VTTELNKEPDASEGIKNKKDLPKDAKYTWK--EKVDISTAGNKKGTVVVTYSDGSSDEVEVDVTVTDNRSDADKY 151
Cdd:TIGR02331   2 ETVEVGGTPDASDSITNLVDLPDGTTYVWKtvNTPDTNTPGDKPAVVVVTYPDGTKDTVPVTVHVTPPRTDADKY 76
rib_alpha TIGR02331
Rib/alpha/Esp surface antigen repeat; Sequences in this family are tandem repeats of about 79 ...
 157-219 1.54e-14

Rib/alpha/Esp surface antigen repeat; Sequences in this family are tandem repeats of about 79 amino acids, present in up to 14 copies in a protein and highly identical, even at the DNA level, within each protein. Sequences with these repeats are found in the Rib and alpha surface antigens of group B Streptococcus, Esp of Enterococcus faecalis, and related proteins of Lactobacillus. The repeat lacks Cys residues. Most members of this protein family also have the cell wall anchor motif LPXTG shared by many staphyloccal and streptococcal surface antigens.


Pssm-ID: 131384 [Multi-domain]  Cd Length: 80  Bit Score: 66.05  E-value: 1.54e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 880898553  157 GEKVEIGGKVDLTDNVTNLPTLPQGTTVTDVTPGgTIDTNTPGNYEGVIEVTYPDGTKDTVKV 219
Cdd:TIGR02331   1 GETVEVGGTPDASDSITNLVDLPDGTTYVWKTVN-TPDTNTPGDKPAVVVVTYPDGTKDTVPV 62
Rib pfam08428
Rib domain; The region featured in this family is found repeated in a number of bacterial ...
 147-219 3.87e-14

Rib domain; The region featured in this family is found repeated in a number of bacterial surface proteins, such as Rib and alpha. These are expressed by group B streptococci, and Rib is thought to confer protective immunity.


Pssm-ID: 462474 [Multi-domain]  Cd Length: 76  Bit Score: 64.94  E-value: 3.87e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 880898553  147 DADKY***VEGEKVEIGGKVDLTDNVTNLPTLPQGTTVTDVTPggtIDTNTPGNYEGVIEVTYPDGTKDTVKV 219
Cdd:pfam08428   1 DADKYTPKGKDITVEVGETPDAEDGIKNKDDLPEGTKYTWKTP---PDTTTPGDKTGTVVVTYPDGSTDEVEV 70
 
Name Accession Description Interval E-value
Rib pfam08428
Rib domain; The region featured in this family is found repeated in a number of bacterial ...
 68-143 1.13e-23

Rib domain; The region featured in this family is found repeated in a number of bacterial surface proteins, such as Rib and alpha. These are expressed by group B streptococci, and Rib is thought to confer protective immunity.


Pssm-ID: 462474 [Multi-domain]  Cd Length: 76  Bit Score: 89.98  E-value: 1.13e-23
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 880898553   68 DADKYTPEGQKVTTELNKEPDASEGIKNKKDLPKDAKYTWKEKVDISTAGNKKGTVVVTYSDGSSDEVEVDVTVTD 143
Cdd:pfam08428   1 DADKYTPKGKDITVEVGETPDAEDGIKNKDDLPEGTKYTWKTPPDTTTPGDKTGTVVVTYPDGSTDEVEVTVTVTD 76
rib_alpha TIGR02331
Rib/alpha/Esp surface antigen repeat; Sequences in this family are tandem repeats of about 79 ...
 79-151 8.50e-16

Rib/alpha/Esp surface antigen repeat; Sequences in this family are tandem repeats of about 79 amino acids, present in up to 14 copies in a protein and highly identical, even at the DNA level, within each protein. Sequences with these repeats are found in the Rib and alpha surface antigens of group B Streptococcus, Esp of Enterococcus faecalis, and related proteins of Lactobacillus. The repeat lacks Cys residues. Most members of this protein family also have the cell wall anchor motif LPXTG shared by many staphyloccal and streptococcal surface antigens.


Pssm-ID: 131384 [Multi-domain]  Cd Length: 80  Bit Score: 69.52  E-value: 8.50e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 880898553   79 VTTELNKEPDASEGIKNKKDLPKDAKYTWK--EKVDISTAGNKKGTVVVTYSDGSSDEVEVDVTVTDNRSDADKY 151
Cdd:TIGR02331   2 ETVEVGGTPDASDSITNLVDLPDGTTYVWKtvNTPDTNTPGDKPAVVVVTYPDGTKDTVPVTVHVTPPRTDADKY 76
rib_alpha TIGR02331
Rib/alpha/Esp surface antigen repeat; Sequences in this family are tandem repeats of about 79 ...
 157-219 1.54e-14

Rib/alpha/Esp surface antigen repeat; Sequences in this family are tandem repeats of about 79 amino acids, present in up to 14 copies in a protein and highly identical, even at the DNA level, within each protein. Sequences with these repeats are found in the Rib and alpha surface antigens of group B Streptococcus, Esp of Enterococcus faecalis, and related proteins of Lactobacillus. The repeat lacks Cys residues. Most members of this protein family also have the cell wall anchor motif LPXTG shared by many staphyloccal and streptococcal surface antigens.


Pssm-ID: 131384 [Multi-domain]  Cd Length: 80  Bit Score: 66.05  E-value: 1.54e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 880898553  157 GEKVEIGGKVDLTDNVTNLPTLPQGTTVTDVTPGgTIDTNTPGNYEGVIEVTYPDGTKDTVKV 219
Cdd:TIGR02331   1 GETVEVGGTPDASDSITNLVDLPDGTTYVWKTVN-TPDTNTPGDKPAVVVVTYPDGTKDTVPV 62
Rib pfam08428
Rib domain; The region featured in this family is found repeated in a number of bacterial ...
 147-219 3.87e-14

Rib domain; The region featured in this family is found repeated in a number of bacterial surface proteins, such as Rib and alpha. These are expressed by group B streptococci, and Rib is thought to confer protective immunity.


Pssm-ID: 462474 [Multi-domain]  Cd Length: 76  Bit Score: 64.94  E-value: 3.87e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 880898553  147 DADKY***VEGEKVEIGGKVDLTDNVTNLPTLPQGTTVTDVTPggtIDTNTPGNYEGVIEVTYPDGTKDTVKV 219
Cdd:pfam08428   1 DADKYTPKGKDITVEVGETPDAEDGIKNKDDLPEGTKYTWKTP---PDTTTPGDKTGTVVVTYPDGSTDEVEV 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH