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Conserved domains on  [gi|896154374|ref|WP_049170979|]
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MULTISPECIES: single-stranded DNA-binding protein [Corynebacterium]

Protein Classification

single-stranded DNA-binding protein( domain architecture ID 11427956)

single-stranded DNA (ssDNA)-binding protein plays a key role in DNA replication, recombination, and repair

CATH:  2.40.50.140
Gene Ontology:  GO:0003697|GO:0006260
PubMed:  12598368|8458342|27838363
SCOP:  4000346

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
6-109 5.73e-31

Single-stranded DNA-binding protein [Replication, recombination and repair];


:

Pssm-ID: 440394  Cd Length: 116  Bit Score: 108.77  E-value: 5.73e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896154374   6 ITVVGNVVHHVENRNTNSGAKVCKFSVASSKSWKGENGWEQSETSYFDVECWGKLAENVNNTVWKGQAVIVHGHVRTDRW 85
Cdd:COG0629    4 VTLVGRLGKDPELRYTPSGTAVANFRLAVNRRYKDQDGEWKDETDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLRTRSW 83

                         90       100
                 ....*....|....*....|....
gi 896154374  86 EGDDGTKHQRQKIIAKAVGPNLRR 109
Cdd:COG0629   84 EDKDGQKRYTTEVVADEIQFLGSR 107
 
Name Accession Description Interval E-value
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
6-109 5.73e-31

Single-stranded DNA-binding protein [Replication, recombination and repair];


Pssm-ID: 440394  Cd Length: 116  Bit Score: 108.77  E-value: 5.73e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896154374   6 ITVVGNVVHHVENRNTNSGAKVCKFSVASSKSWKGENGWEQSETSYFDVECWGKLAENVNNTVWKGQAVIVHGHVRTDRW 85
Cdd:COG0629    4 VTLVGRLGKDPELRYTPSGTAVANFRLAVNRRYKDQDGEWKDETDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLRTRSW 83

                         90       100
                 ....*....|....*....|....
gi 896154374  86 EGDDGTKHQRQKIIAKAVGPNLRR 109
Cdd:COG0629   84 EDKDGQKRYTTEVVADEIQFLGSR 107
SSB_OBF cd04496
SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs ...
 6-105 8.46e-28

SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.


Pssm-ID: 239942  Cd Length: 100  Bit Score: 99.99  E-value: 8.46e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896154374   6 ITVVGNVVHHVENRNTNSGAKVCKFSVASSKSWKgENGWEQSETSYFDVECWGKLAENVNNTVWKGQAVIVHGHVRTDRW 85
Cdd:cd04496    1 VILIGRLGKDPELRYTPSGTPVARFSLAVNRRRK-DRDEEEEETDWIRVVAFGKLAENAAKYLKKGDLVYVEGRLRTRSW 79

                         90       100
                 ....*....|....*....|
gi 896154374  86 EGDDGTKHQRQKIIAKAVGP 105
Cdd:cd04496   80 EDKDGQKRYGTEVVADRIEF 99
SSB pfam00436
Single-strand binding protein family; This family includes single stranded binding proteins ...
 6-103 3.99e-25

Single-strand binding protein family; This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.


Pssm-ID: 425680  Cd Length: 103  Bit Score: 93.45  E-value: 3.99e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896154374    6 ITVVGNVVHHVENRNTNSGAKVCKFSVASSKSWKgENGWEQSETSYFDVECWGKLAENVNNTVWKGQAVIVHGHVRTDRW 85
Cdd:pfam00436   4 VILVGRLTRDPELRYTPNGNAVANFTLATNRRFK-DRGEGDEETDFHRVVVFGKLAEVAAQYLKKGSLVYVEGRLQTRKY 82

                          90
                  ....*....|....*...
gi 896154374   86 EGDDGTKHQRQKIIAKAV 103
Cdd:pfam00436  83 EDQEGQKRYVTEIVADEV 100
ssb TIGR00621
single stranded DNA-binding protein (ssb); All proteins in this family for which functions are ...
 6-104 2.48e-23

single stranded DNA-binding protein (ssb); All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273179 [Multi-domain]  Cd Length: 164  Bit Score: 90.56  E-value: 2.48e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896154374    6 ITVVGNVVHHVENRNTNSGAKVCKFSVASSKSWKGENGWEQSETSYFDVECWGKLAENVNNTVWKGQAVIVHGHVRTDRW 85
Cdd:TIGR00621   7 VILVGRLTRDPELRYTPSGNAVANFTLATNRRWKDQDGEWKEETEWHDIVIFGRLAEVAAQYLKKGSLVYVEGRLRTRKW 86

                          90
                  ....*....|....*....
gi 896154374   86 EGDDGTKHQRQKIIAKAVG 104
Cdd:TIGR00621  87 EDQNGQKRSKTEIIADNVQ 105
PRK07772 PRK07772
single-stranded DNA-binding protein; Provisional
 1-179 2.40e-20

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236092 [Multi-domain]  Cd Length: 186  Bit Score: 83.54  E-value: 2.40e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896154374   1 MSEAVITVVGNVVHHVENRNTNSGAKVCKFSVASS-KSW-KGENGWEQSETSYFDVECWGKLAENVNNTVWKGQAVIVHG 78
Cdd:PRK07772   2 AGDTTITVVGNLTADPELRFTPSGAAVANFTVASTpRTFdRQTNEWKDGEALFLRCSIWRQAAENVAESLTKGMRVIVTG 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896154374  79 HVRTDRWEGDDGTKHQRQKIIAKAVGPNLRRHLATVKTMTEKPHESPTGLGesstgdseasvtetvasQAGAVRTFTAST 158
Cdd:PRK07772  82 RLKQRSYETREGEKRTVVELEVDEIGPSLRYATAKVTRASRGGGGGGGGGG-----------------FGGGGGGSGGGG 144

                        170       180
                 ....*....|....*....|.
gi 896154374 159 GGAGEAGNTGAASSEQREMAD 179
Cdd:PRK07772 145 GGGGGGGAPGGGGAQASAPAD 165
 
Name Accession Description Interval E-value
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
6-109 5.73e-31

Single-stranded DNA-binding protein [Replication, recombination and repair];


Pssm-ID: 440394  Cd Length: 116  Bit Score: 108.77  E-value: 5.73e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896154374   6 ITVVGNVVHHVENRNTNSGAKVCKFSVASSKSWKGENGWEQSETSYFDVECWGKLAENVNNTVWKGQAVIVHGHVRTDRW 85
Cdd:COG0629    4 VTLVGRLGKDPELRYTPSGTAVANFRLAVNRRYKDQDGEWKDETDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLRTRSW 83

                         90       100
                 ....*....|....*....|....
gi 896154374  86 EGDDGTKHQRQKIIAKAVGPNLRR 109
Cdd:COG0629   84 EDKDGQKRYTTEVVADEIQFLGSR 107
SSB_OBF cd04496
SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs ...
 6-105 8.46e-28

SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.


Pssm-ID: 239942  Cd Length: 100  Bit Score: 99.99  E-value: 8.46e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896154374   6 ITVVGNVVHHVENRNTNSGAKVCKFSVASSKSWKgENGWEQSETSYFDVECWGKLAENVNNTVWKGQAVIVHGHVRTDRW 85
Cdd:cd04496    1 VILIGRLGKDPELRYTPSGTPVARFSLAVNRRRK-DRDEEEEETDWIRVVAFGKLAENAAKYLKKGDLVYVEGRLRTRSW 79

                         90       100
                 ....*....|....*....|
gi 896154374  86 EGDDGTKHQRQKIIAKAVGP 105
Cdd:cd04496   80 EDKDGQKRYGTEVVADRIEF 99
SSB pfam00436
Single-strand binding protein family; This family includes single stranded binding proteins ...
 6-103 3.99e-25

Single-strand binding protein family; This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.


Pssm-ID: 425680  Cd Length: 103  Bit Score: 93.45  E-value: 3.99e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896154374    6 ITVVGNVVHHVENRNTNSGAKVCKFSVASSKSWKgENGWEQSETSYFDVECWGKLAENVNNTVWKGQAVIVHGHVRTDRW 85
Cdd:pfam00436   4 VILVGRLTRDPELRYTPNGNAVANFTLATNRRFK-DRGEGDEETDFHRVVVFGKLAEVAAQYLKKGSLVYVEGRLQTRKY 82

                          90
                  ....*....|....*...
gi 896154374   86 EGDDGTKHQRQKIIAKAV 103
Cdd:pfam00436  83 EDQEGQKRYVTEIVADEV 100
ssb TIGR00621
single stranded DNA-binding protein (ssb); All proteins in this family for which functions are ...
 6-104 2.48e-23

single stranded DNA-binding protein (ssb); All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273179 [Multi-domain]  Cd Length: 164  Bit Score: 90.56  E-value: 2.48e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896154374    6 ITVVGNVVHHVENRNTNSGAKVCKFSVASSKSWKGENGWEQSETSYFDVECWGKLAENVNNTVWKGQAVIVHGHVRTDRW 85
Cdd:TIGR00621   7 VILVGRLTRDPELRYTPSGNAVANFTLATNRRWKDQDGEWKEETEWHDIVIFGRLAEVAAQYLKKGSLVYVEGRLRTRKW 86

                          90
                  ....*....|....*....
gi 896154374   86 EGDDGTKHQRQKIIAKAVG 104
Cdd:TIGR00621  87 EDQNGQKRSKTEIIADNVQ 105
PRK07772 PRK07772
single-stranded DNA-binding protein; Provisional
 1-179 2.40e-20

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236092 [Multi-domain]  Cd Length: 186  Bit Score: 83.54  E-value: 2.40e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896154374   1 MSEAVITVVGNVVHHVENRNTNSGAKVCKFSVASS-KSW-KGENGWEQSETSYFDVECWGKLAENVNNTVWKGQAVIVHG 78
Cdd:PRK07772   2 AGDTTITVVGNLTADPELRFTPSGAAVANFTVASTpRTFdRQTNEWKDGEALFLRCSIWRQAAENVAESLTKGMRVIVTG 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896154374  79 HVRTDRWEGDDGTKHQRQKIIAKAVGPNLRRHLATVKTMTEKPHESPTGLGesstgdseasvtetvasQAGAVRTFTAST 158
Cdd:PRK07772  82 RLKQRSYETREGEKRTVVELEVDEIGPSLRYATAKVTRASRGGGGGGGGGG-----------------FGGGGGGSGGGG 144

                        170       180
                 ....*....|....*....|.
gi 896154374 159 GGAGEAGNTGAASSEQREMAD 179
Cdd:PRK07772 145 GGGGGGGAPGGGGAQASAPAD 165
PRK05853 PRK05853
hypothetical protein; Validated
 8-163 1.16e-18

hypothetical protein; Validated


Pssm-ID: 235626  Cd Length: 161  Bit Score: 78.34  E-value: 1.16e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896154374   8 VVGNVVHHVENRNTNSgAKVCKFSVAS-SKSWKGENGWEQSETSYFDVECWGKLAENVNNTVWKGQAVIVHGHVRTDRWE 86
Cdd:PRK05853   1 VVGHIVNDPQRRKVGD-QEVIKFRVASnSRRRTADGGWEPGNSLFITVNCWGRLVTGVGAALGKGAPVIVVGHVYTSEYE 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896154374  87 GDDGTKHQRQKIIAKAVGPNLRRHLATVktmtEKPHESPTGLGE----SSTGDSEASVTETVASQAGAVRTFTASTGGAG 162
Cdd:PRK05853  80 DRDGNRRSSLEMRATSVGPDLSRCIVRI----EKPRYTGPSAGEapaaTGTGAADAADAPASAADSVSDVVDDDAATGHN 155


                 .
gi 896154374 163 E 163
Cdd:PRK05853 156 P 156
PRK13732 PRK13732
single-stranded DNA-binding protein; Provisional
 6-186 3.18e-10

single-stranded DNA-binding protein; Provisional


Pssm-ID: 184284 [Multi-domain]  Cd Length: 175  Bit Score: 56.28  E-value: 3.18e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896154374   6 ITVVGNVVHHVENRNTNSGAKVCKFSVASSKSWKGENGWEQSE-TSYFDVECWGKLAENVNNTVWKGQAVIVHGHVRTDR 84
Cdd:PRK13732   9 VILVGRLGKDPEVRYIPNGGAVANLQVATSESWRDKQTGEMREqTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLRTRS 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896154374  85 WEgDDGTKHQRQKIIAKAVGPnlRRHLATVKTMTEKPHESPTGLGESSTGDseasvtetvasqagAVRTFTASTGGAGEA 164
Cdd:PRK13732  89 WE-DNGITRYVTEILVKTTGT--MQMLGRAPQQNAQPQPGPQQNGQPQSAD--------------ATKKGGAKTKGRGRK 151

                        170       180
                 ....*....|....*....|....
gi 896154374 165 GNTGAASSEQREMADAGVS--APF 186
Cdd:PRK13732 152 AAQPEPQPQPPEGEDYGFSddIPF 175
PRK07459 PRK07459
single-stranded DNA-binding protein; Provisional
 1-102 2.55e-09

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180986  Cd Length: 121  Bit Score: 52.77  E-value: 2.55e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896154374   1 MSEAVITVVGNVVHHVENRNTNSGAKVCKFSVASSKSWKGEngweqsETSYFDVECWGKLAENVNNTVWKGQAVIVHGHV 80
Cdd:PRK07459   1 MSLNSVTLVGRAGRDPEVRYFESGSVVCNLTLAVNRRSRDD------EPDWFNLEIWGKTAQVAADYVKKGSLIGITGSL 74

                         90       100
                 ....*....|....*....|..
gi 896154374  81 RTDRWEgDDGTKHQRQKIIAKA 102
Cdd:PRK07459  75 KFDRWT-DRNTGEDRSKPVIRV 95
PRK08763 PRK08763
single-stranded DNA-binding protein; Provisional
 6-100 9.51e-09

single-stranded DNA-binding protein; Provisional


Pssm-ID: 181549 [Multi-domain]  Cd Length: 164  Bit Score: 52.25  E-value: 9.51e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896154374   6 ITVVGNVVHHVENRNTNSGAKVCKFSVASSKSWKGENGWEQSETSYFDVECWGKLAENVNNTVWKGQAVIVHGHVRTDRW 85
Cdd:PRK08763   8 VILVGNLGNDPDIKYTQSGMTITRISLATTSVRKDREGNTQERTEWHRVKFFGKLGEIAGEYLRKGSQCYIEGSIRYDKF 87

                         90
                 ....*....|....*
gi 896154374  86 EGDDGTKHQRQKIIA 100
Cdd:PRK08763  88 TGQDGQERYVTEIVA 102
PRK05733 PRK05733
single-stranded DNA-binding protein; Provisional
 6-99 5.44e-08

single-stranded DNA-binding protein; Provisional


Pssm-ID: 235585 [Multi-domain]  Cd Length: 172  Bit Score: 50.31  E-value: 5.44e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896154374   6 ITVVGNVVHHVENRNTNSGAKVCKFSVASSKSWKG-ENGWEQSETSYFDVECWGKLAENVNNTVWKGQAVIVHGHVRTDR 84
Cdd:PRK05733   8 VILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDkQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQVYIEGKLQTRE 87

                         90
                 ....*....|....*
gi 896154374  85 WEgDDGTKHQRQKII 99
Cdd:PRK05733  88 WE-KDGIKRYTTEIV 101
PRK06751 PRK06751
single-stranded DNA-binding protein; Provisional
 6-103 1.09e-07

single-stranded DNA-binding protein; Provisional


Pssm-ID: 168659 [Multi-domain]  Cd Length: 173  Bit Score: 49.41  E-value: 1.09e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896154374   6 ITVVGNVVHHVENRNTNSGAKVCKFSVASSKSWKGENGweQSETSYFDVECWGKLAENVNNTVWKGQAVIVHGHVRTDRW 85
Cdd:PRK06751   5 VILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQG--EREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTRNY 82

                         90
                 ....*....|....*...
gi 896154374  86 EGDDGTKHQRQKIIAKAV 103
Cdd:PRK06751  83 EGQDGKRVYVTEVLAESV 100
PRK07274 PRK07274
single-stranded DNA-binding protein; Provisional
 1-93 2.08e-07

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180914  Cd Length: 131  Bit Score: 47.83  E-value: 2.08e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896154374   1 MSEAVItVVGNVVHHVENRNTNSGAKVCKFSVASSKSWKGENGweQSETSYFDVECWGKLAENVNNTVWKGQAVIVHGHV 80
Cdd:PRK07274   1 MYNKVI-LIGRLTATPELVKTANDKSVARVTLAVNRRFKNQNG--EREADFINVVLWGKLAETLASYASKGSLISIDGEL 77

                         90
                 ....*....|...
gi 896154374  81 RTDRWEgDDGTKH 93
Cdd:PRK07274  78 RTRKYE-KDGQTH 89
PRK06958 PRK06958
single-stranded DNA-binding protein; Provisional
 6-100 3.39e-07

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180777 [Multi-domain]  Cd Length: 182  Bit Score: 48.25  E-value: 3.39e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896154374   6 ITVVGNVVHHVENRNTNSGAKVCKFSVASSKSWKGENGWEQSE-TSYFDVECWGKLAENVNNTVWKGQAVIVHGHVRTDR 84
Cdd:PRK06958   7 VILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKASGEFKEaTEWHRVAFFGRLAEIVGEYLKKGSSVYIEGRIRTRK 86

                         90
                 ....*....|....*.
gi 896154374  85 WEGDDGTKHQRQKIIA 100
Cdd:PRK06958  87 WQGQDGQDRYSTEIVA 102
PRK06863 PRK06863
single-stranded DNA-binding protein; Provisional
 6-90 6.55e-07

single-stranded DNA-binding protein; Provisional


Pssm-ID: 136097 [Multi-domain]  Cd Length: 168  Bit Score: 47.27  E-value: 6.55e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896154374   6 ITVVGNVVHHVENRNTNSGAKVCKFSVASSKSWKGENGWEQSE-TSYFDVECWGKLAENVNNTVWKGQAVIVHGHVRTDR 84
Cdd:PRK06863   7 VIIVGHLGNDPEIRTMPNGEAVANISVATSESWTDKNTGERREvTEWHRIVFYRRQAEVAGEYLRKGSQVYVEGRLKTRK 86


                 ....*.
gi 896154374  85 WEGDDG 90
Cdd:PRK06863  87 WQDQNG 92
PRK09010 PRK09010
single-stranded DNA-binding protein; Provisional
 6-90 7.32e-07

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236362 [Multi-domain]  Cd Length: 177  Bit Score: 47.15  E-value: 7.32e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896154374   6 ITVVGNVVHHVENRNTNSGAKVCKFSVASSKSWKGENGWEQSE-TSYFDVECWGKLAENVNNTVWKGQAVIVHGHVRTDR 84
Cdd:PRK09010   9 VILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEMKEqTEWHRVVLFGKLAEVAGEYLRKGSQVYIEGQLRTRK 88


                 ....*.
gi 896154374  85 WEGDDG 90
Cdd:PRK09010  89 WTDQSG 94
PRK06642 PRK06642
single-stranded DNA-binding protein; Provisional
 6-130 6.96e-06

single-stranded DNA-binding protein; Provisional


Pssm-ID: 135984  Cd Length: 152  Bit Score: 43.94  E-value: 6.96e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896154374   6 ITVVGNVVHHVENRNTNSGAKVCKFSVASSKSWKGENGWEQSE-TSYFDVECWGK-LAENVNNTVWKGQAVIVHGHVRTD 83
Cdd:PRK06642   8 VILIGNVGRDPEIRTTGEGKKIINLSLATTETWKDRITSERKErTEWHRVVIFSEgLVSVVERYVTKGSKLYIEGSLQTR 87

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 896154374  84 RWEGDDGtkhqRQKIIAKAVGPNLRRHLATVKTMTEKPHESPTGLGE 130
Cdd:PRK06642  88 KWNDNSG----QEKYTTEVVLQNFNSQLILLDSKNSNNHNQDSGHSE 130
PRK06752 PRK06752
single-stranded DNA-binding protein; Validated
 6-103 1.50e-04

single-stranded DNA-binding protein; Validated


Pssm-ID: 168660  Cd Length: 112  Bit Score: 39.63  E-value: 1.50e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896154374   6 ITVVGNVVHHVENRNTNSGAKVCKFSVASSKSWKGENGWEQSEtsYFDVECWGKLAENVNNTVWKGQAVIVHGHVRTDRW 85
Cdd:PRK06752   5 VVLIGRLTKEPELYYTKQGVAYARVCVAVNRGFRNSLGEQQVD--FINCVVWRKSAENVTEYCTKGSLVGITGRIHTRNY 82

                         90
                 ....*....|....*...
gi 896154374  86 EGDDGTKHQRQKIIAKAV 103
Cdd:PRK06752  83 EDDQGKRIYITEVVIESI 100
PRK08182 PRK08182
single-stranded DNA-binding protein; Provisional
 54-123 2.92e-03

single-stranded DNA-binding protein; Provisional


Pssm-ID: 169261  Cd Length: 148  Bit Score: 36.58  E-value: 2.92e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896154374  54 VECWGKLAENVNNTVWKGQAVIVHGHVRTDRWEGDDGTKHQRQKIIAKAVGPNLRRhLATVkTMTEKPHE 123
Cdd:PRK08182  58 VELWHRDAEHWARLYQKGMRVLVEGRMERDEWTDNEDNERVTFKVEARRVGILPYR-IESV-TLSPKPAA 125
PRK06341 PRK06341
single-stranded DNA-binding protein; Provisional
 6-179 4.88e-03

single-stranded DNA-binding protein; Provisional


Pssm-ID: 235782 [Multi-domain]  Cd Length: 166  Bit Score: 35.93  E-value: 4.88e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896154374   6 ITVVGNVVHHVENRNTNSGAKVCKFSVASSKSWKGENGWEQSE-TSYFDVECWGK-LAENVNNTVWKGQAVIVHGHVRTD 83
Cdd:PRK06341   8 VILIGNLGADPEIRRTQDGRPIANLRIATSETWRDRNSGERKEkTEWHRVVIFNEgLCKVAEQYLKKGAKVYIEGQLQTR 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896154374  84 RWEGDDGTKHQRQKIIAKAVGPNLrrhlatvkTMTEKPHE---SPTGLGESSTGDSEASvtetvasqagavrtftASTGG 160
Cdd:PRK06341  88 KWTDQSGVERYSTEVVLQGFNSTL--------TMLDGRGEgggGGGGGDDGGGGDFGSS----------------GPSRG 143

                        170
                 ....*....|....*....
gi 896154374 161 AGEAGNTGAASSEQREMAD 179
Cdd:PRK06341 144 GPRPASSGGGGNFSRDMDD 162
PRK06293 PRK06293
single-stranded DNA-binding protein; Provisional
 17-91 9.87e-03

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180517 [Multi-domain]  Cd Length: 161  Bit Score: 35.26  E-value: 9.87e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 896154374  17 ENRNTNSGAKVCKFSVASsKSWKGEngweQSETSYFDVECWGKLAENVNNTVWKGQAVIVHGHVRTDRWEGDDGT 91
Cdd:PRK06293  15 EERMTSKGKRVVVLRLGV-KSRVGS----KDETVWCRCNIWGNRYDKMLPYLKKGSGVIVAGEMSPESYVDKDGS 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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