NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|896176626|ref|WP_049189406|]
View 

MULTISPECIES: DUF3566 domain-containing protein [Corynebacterium]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF3566 super family cl13516
Transmembrane domain of unknown function (DUF3566); This family of proteins is functionally ...
 5-108 2.45e-18

Transmembrane domain of unknown function (DUF3566); This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 136 to 304 amino acids in length. This region represents a transmembrane region found at the C-terminus of the proteins.


The actual alignment was detected with superfamily member pfam12089:

Pssm-ID: 432323  Cd Length: 118  Bit Score: 73.71  E-value: 2.45e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896176626    5 NLVVDKVSPWSAMRITAATGFIGFLVWLAAVGLLYLLLSGMGLLAPISEMVGG----------EDSISAGLVLGLAAAVG 74
Cdd:pfam12089   5 RLQLTRVDPWSVMKLSFLLSVALFIVWVVAVAVLWLVLDAMGVFDSINSLVGDlvggdsgfdlSSYISFGRVFGFAALIG 84

                          90       100       110
                  ....*....|....*....|....*....|....
gi 896176626   75 ALWWVLSIGLMALGAVIYNACGGLVGGLKISLAD 108
Cdd:pfam12089  85 AVNVVLLTALATLGAFIYNLAADLVGGLEVTLAD 118
 
Name Accession Description Interval E-value
DUF3566 pfam12089
Transmembrane domain of unknown function (DUF3566); This family of proteins is functionally ...
 5-108 2.45e-18

Transmembrane domain of unknown function (DUF3566); This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 136 to 304 amino acids in length. This region represents a transmembrane region found at the C-terminus of the proteins.


Pssm-ID: 432323  Cd Length: 118  Bit Score: 73.71  E-value: 2.45e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896176626    5 NLVVDKVSPWSAMRITAATGFIGFLVWLAAVGLLYLLLSGMGLLAPISEMVGG----------EDSISAGLVLGLAAAVG 74
Cdd:pfam12089   5 RLQLTRVDPWSVMKLSFLLSVALFIVWVVAVAVLWLVLDAMGVFDSINSLVGDlvggdsgfdlSSYISFGRVFGFAALIG 84

                          90       100       110
                  ....*....|....*....|....*....|....
gi 896176626   75 ALWWVLSIGLMALGAVIYNACGGLVGGLKISLAD 108
Cdd:pfam12089  85 AVNVVLLTALATLGAFIYNLAADLVGGLEVTLAD 118
 
Name Accession Description Interval E-value
DUF3566 pfam12089
Transmembrane domain of unknown function (DUF3566); This family of proteins is functionally ...
 5-108 2.45e-18

Transmembrane domain of unknown function (DUF3566); This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 136 to 304 amino acids in length. This region represents a transmembrane region found at the C-terminus of the proteins.


Pssm-ID: 432323  Cd Length: 118  Bit Score: 73.71  E-value: 2.45e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896176626    5 NLVVDKVSPWSAMRITAATGFIGFLVWLAAVGLLYLLLSGMGLLAPISEMVGG----------EDSISAGLVLGLAAAVG 74
Cdd:pfam12089   5 RLQLTRVDPWSVMKLSFLLSVALFIVWVVAVAVLWLVLDAMGVFDSINSLVGDlvggdsgfdlSSYISFGRVFGFAALIG 84

                          90       100       110
                  ....*....|....*....|....*....|....
gi 896176626   75 ALWWVLSIGLMALGAVIYNACGGLVGGLKISLAD 108
Cdd:pfam12089  85 AVNVVLLTALATLGAFIYNLAADLVGGLEVTLAD 118
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH