|
Name |
Accession |
Description |
Interval |
E-value |
| PRK09647 |
PRK09647 |
RNA polymerase sigma factor SigE; Reviewed |
18-202 |
6.93e-115 |
|
RNA polymerase sigma factor SigE; Reviewed
Pssm-ID: 236606 [Multi-domain] Cd Length: 203 Bit Score: 325.97 E-value: 6.93e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 18 DAASADVTEQLSGTAAFDA--GVGEMPSWSELVQAHADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSYRPGTFEGW 95
Cdd:PRK09647 2 DDDWVEPSDELTGTAVFDAtgDKATMPSWEELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSLQNYQPGTFEGW 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 96 LHRITTNLFLDMVRHRQVIRMEALPENYDRVPGTLKTPEQAVDDAMLDPDLEIALAELQPDYRAVVVLCDVVGLTYEEIA 175
Cdd:PRK09647 82 LHRITTNLFLDMVRRRARIRMEALPEDYDRVPGDEPNPEQIYHDARLDPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIA 161
|
170 180
....*....|....*....|....*..
gi 896182377 176 STLGLKMGTVRSRIHRARSSLRATLER 202
Cdd:PRK09647 162 ATLGVKLGTVRSRIHRGRQQLRAALAA 188
|
|
| RpoE |
COG1595 |
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; ... |
39-206 |
1.29e-50 |
|
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; DNA-directed RNA polymerase specialized sigma subunit, sigma24 family is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 441203 [Multi-domain] Cd Length: 181 Bit Score: 162.09 E-value: 1.29e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 39 GEMPSWSELVQAHADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSYRP-GTFEGWLHRITTNLFLDMVRHRQViRME 117
Cdd:COG1595 14 GDEAAFEELYERYRPRLYRYARRLLGDRADAEDLVQETFLRLWRKLDSFRGrGSFRAWLYRIARNLAIDHLRKRRR-RRE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 118 ALPENYDRVPGTLKTPEQAVDDAMLDPDLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLR 197
Cdd:COG1595 93 LLDELAEELPDEAADPEEALEAEELLEALLAALERLPPRQREVLVLRYLEGLSYAEIAEILGISEGTVKSRLSRARKKLR 172
|
....*....
gi 896182377 198 ATLERLEKE 206
Cdd:COG1595 173 EALEEEGAL 181
|
|
| PRK09652 |
PRK09652 |
RNA polymerase sigma factor RpoE; Provisional |
46-206 |
2.08e-46 |
|
RNA polymerase sigma factor RpoE; Provisional
Pssm-ID: 236608 [Multi-domain] Cd Length: 182 Bit Score: 151.50 E-value: 2.08e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 46 ELVQAHADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSYRPGT-FEGWLHRITTNLFLDMVR--HRQVIRMEALPEN 122
Cdd:PRK09652 14 LLVRRYQPRVKRLLSRLTRDPADAEDLVQETFIKAYRALHSFRGGAaFYTWLYRIARNTAINYLRkqGRRPPASDVDAEE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 123 YD-----RVPGTLKTPEQAVDDAMLDPDLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLR 197
Cdd:PRK09652 94 AEdfdlaDALRDISTPENELLSAELEQRVRAAIESLPEELRTAITLREIEGLSYEEIAEIMGCPIGTVRSRIFRAREALR 173
|
....*....
gi 896182377 198 ATLERLEKE 206
Cdd:PRK09652 174 AKLQPLLDE 182
|
|
| sigma70-ECF |
TIGR02937 |
RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the ... |
43-200 |
4.42e-38 |
|
RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Pssm-ID: 274357 [Multi-domain] Cd Length: 158 Bit Score: 129.39 E-value: 4.42e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 43 SWSELVQAHADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSYRP-GTFEGWLHRITTNLFLDMVRHRQVIRMEAlpE 121
Cdd:TIGR02937 2 AFEELYERYLPLVYRYARRYLGDDADAEDLVQEAFLKLLEALDRFDPeGSFKAWLFRIARNLILDYLRRKRRLRREL--D 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 896182377 122 NYDRVPGTLKTPEQAVDDAMLDPDLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLRATL 200
Cdd:TIGR02937 80 LLEELLDSDPSPEEELEQEEEREALREALEKLPEREREVLVLRYLEGLSYKEIAEILGISVGTVKRRLKRARKKLRELL 158
|
|
| PRK09641 |
PRK09641 |
RNA polymerase sigma factor SigW; Provisional |
39-203 |
4.44e-34 |
|
RNA polymerase sigma factor SigW; Provisional
Pssm-ID: 182012 [Multi-domain] Cd Length: 187 Bit Score: 120.19 E-value: 4.44e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 39 GEMPSWSELVQAHADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSYRPG-TFEGWLHRITTNLFLDMVRHR------ 111
Cdd:PRK09641 15 GDQNAFAELVDLYKDKIYQLCYRMLGNRHEAEDAAQEAFIRAYVNIDSYDINrKFSTWLYRIATNLTIDRLRKRkpdyyl 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 112 --QVIRMEALpENYDRVPGTLKTPEQAVDDAMLDPDLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRI 189
Cdd:PRK09641 95 daEVAGTEGL-TMYSQLAADDALPEEQVVSLELQETIQEAILQLPEKYRTVIVLKYIEDLSLKEISEILDLPVGTVKTRI 173
|
170
....*....|....
gi 896182377 190 HRARSSLRATLERL 203
Cdd:PRK09641 174 HRGREALRKQLRHL 187
|
|
| PRK11924 |
PRK11924 |
RNA polymerase sigma factor; Provisional |
45-202 |
5.12e-31 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183384 [Multi-domain] Cd Length: 179 Bit Score: 111.99 E-value: 5.12e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 45 SELVQAHADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSYRP-GTFEGWLHRITTNLFLDMVRHRQVIRMEALPENY 123
Cdd:PRK11924 16 SELFRPHAPDLLRYARRQLGDRALAEDAVQEAFLRAWRKADLFNGkGSARTWLLTIARNVCYDLLRRRRREKAVLSDDAL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 124 DRV-PGTLKTPEQAVDDAMLDPDLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLRATLER 202
Cdd:PRK11924 96 EPEfAETAETPEAALLAKDDLARIDRCLDALPVKQREVFLLRYVEGLSYREIAEILGVPVGTVKSRLRRARQLLRECLEA 175
|
|
| SigM_subfam |
TIGR02950 |
RNA polymerase sigma factor, SigM family; This family of RNA polymerase sigma factors is a ... |
49-201 |
4.65e-28 |
|
RNA polymerase sigma factor, SigM family; This family of RNA polymerase sigma factors is a member of the Sigma-70 subfamily (TIGR02937) and is restricted to certain lineages of the order Bacillales. This family encompasses at least two distinct sigma factors as two proteins are found in each of B. anthracis, B. subtilis subsp. subtilis str. 168, and B. lichiniformis (although these are not apparently the same two in each). One of these is designated as SigM in B. subtilis (Swiss_Prot:
Pssm-ID: 274361 [Multi-domain] Cd Length: 154 Bit Score: 103.69 E-value: 4.65e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 49 QAHADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSYRPGTFEGWLHRITTNLFLDMVR---HRQVIRMEALPENYDR 125
Cdd:TIGR02950 2 REYMHDVFRYLYRLTKDKHLAEDLLQETFLKAYIHLHSFKDSSIKPWLFRIARNAFIDWYRkdkKIQTIDDDAIGDLEQH 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 896182377 126 vpgTLKTPEQAVDDAMLDPDLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLRATLE 201
Cdd:TIGR02950 82 ---PVESPEHHLLIKIEQEEITHHLSRLPENYRTVLILREFKEFSYKEIAELLNLSLAKVKSNLFRARKELKKLLE 154
|
|
| PRK05602 |
PRK05602 |
RNA polymerase sigma factor; Reviewed |
37-204 |
6.83e-28 |
|
RNA polymerase sigma factor; Reviewed
Pssm-ID: 235530 [Multi-domain] Cd Length: 186 Bit Score: 103.96 E-value: 6.83e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 37 GVGEMPSWSELVQAHADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSYRPGT--FEGWLHRITTNLFLDMVRHRQVI 114
Cdd:PRK05602 15 AAGDPAAFRVLVARKLPRLLALATRMLGDPAEAEDVAQETFLRIWKQAPSWRPGEarFDTWLHRVVLNLCYDRLRRRREV 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 115 RMEALPENYDRVPGtlktPEQAVDDAMLDPDLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARS 194
Cdd:PRK05602 95 PVEDAPDVPDPAPG----PDAGLEARQRARRVEQALAALPERQREAIVLQYYQGLSNIEAAAVMDISVDALESLLARGRR 170
|
170
....*....|
gi 896182377 195 SLRATLERLE 204
Cdd:PRK05602 171 ALRAQLADLP 180
|
|
| PRK09638 |
PRK09638 |
RNA polymerase sigma factor SigY; Reviewed |
39-202 |
6.83e-28 |
|
RNA polymerase sigma factor SigY; Reviewed
Pssm-ID: 182010 [Multi-domain] Cd Length: 176 Bit Score: 103.95 E-value: 6.83e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 39 GEMPSWSELVQAHADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSYRP-GTFEGWLHRITTNLFLDMVRHRQviRME 117
Cdd:PRK09638 15 GDDAALTTLFQQHYSFLYKYLLKLTLDPDLAEDLVQETMLKAIENLSSFQGrSKFSTWLISIASRLYKDHLRKQK--REK 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 118 ALPENYDRVPGTLKTPEQAVDDA----MLDpdleiALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRAR 193
Cdd:PRK09638 93 LRLQRAKEETLRKEKWEAAIKGAewseMLD-----ALSKLDPEFRAPVILKHYYGYTYEEIAKMLNIPEGTVKSRVHHGI 167
|
....*....
gi 896182377 194 SSLRATLER 202
Cdd:PRK09638 168 KQLRKEWGQ 176
|
|
| SigE-fam_strep |
TIGR02983 |
RNA polymerase sigma-70 factor, sigma-E family; This group of similar sigma-70 factors ... |
46-201 |
1.42e-24 |
|
RNA polymerase sigma-70 factor, sigma-E family; This group of similar sigma-70 factors includes the sigE factor from Streptomyces coelicolor. The family appears to include a paralagous expansion in the Streptomycetes lineage, while related Actinomycetales have at most two representatives.
Pssm-ID: 132028 [Multi-domain] Cd Length: 162 Bit Score: 94.76 E-value: 1.42e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 46 ELVQAHADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSYR-PGTFEGWLHRITTNLFLDMVRHRqvIRMEALPENYd 124
Cdd:TIGR02983 10 AFVAARYPRLLRTAYLLTGDPHEAEDLVQEALVRTYVRWDRIRdPDAPDAYVRRVLVNLARSRWRRR--RLLELPTREL- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 125 rvpgtlktPEQAVDDAMLDPDLEI----ALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLRATL 200
Cdd:TIGR02983 87 --------PDAAAPDPAPDVALRAalarALRRLPARQRAVVVLRYYEDLSEAQVAEALGISVGTVKSRLSRALARLRELL 158
|
.
gi 896182377 201 E 201
Cdd:TIGR02983 159 E 159
|
|
| PRK09643 |
PRK09643 |
RNA polymerase sigma factor SigM; Reviewed |
39-203 |
3.75e-23 |
|
RNA polymerase sigma factor SigM; Reviewed
Pssm-ID: 236604 [Multi-domain] Cd Length: 192 Bit Score: 92.08 E-value: 3.75e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 39 GEMPSWSELVQAHADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSYR-PGTFEGWLHRITTNLFLDMVRHRQVIRME 117
Cdd:PRK09643 24 GDRYAFGELFRRHHRRLWAVARRTSGTREDAADALQDAMLSAHRAAGSFRgDAAVSSWLHRIVVNACLDRLRRAKARPTV 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 118 ALPENYDrVPGTLKTPEQAVDDAMldpDLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLR 197
Cdd:PRK09643 104 PLDDVYP-VAQLERDPTARVETAL---AVQRALMRLPVEQRAALVAVDMQGYSVADAARMLGVAEGTVKSRCARGRARLA 179
|
....*.
gi 896182377 198 ATLERL 203
Cdd:PRK09643 180 ELLGYL 185
|
|
| PRK11922 |
PRK11922 |
RNA polymerase sigma factor; Provisional |
19-202 |
1.11e-22 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237024 [Multi-domain] Cd Length: 231 Bit Score: 91.56 E-value: 1.11e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 19 AASADVTEQLSGTAAFDAGV------GEMPSWSELVQAHADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSYR-PGT 91
Cdd:PRK11922 1 MTTAPASRPPPLSAASDRELvarvlaGDEAAFEALMRRHNRRLYRTARAILRNDAEAEDVVQEAYLRAFRALGTFRgDAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 92 FEGWLHRITTNLFLDMVRHRQVIRMEALPENYDRVPGTLKTPEQAVDDamlDPD-----------LEIALAELQPDYRAV 160
Cdd:PRK11922 81 LSTWLSRIVLNEALGRLRRRRRLVNLAEMVMASTIAGGERTPLADPAE---DPEraaarreiralLERAIDALPDAFRAV 157
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 896182377 161 VVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLRATLER 202
Cdd:PRK11922 158 FVLRVVEELSVEETAQALGLPEETVKTRLHRARRLLRESLAR 199
|
|
| PRK09644 |
PRK09644 |
RNA polymerase sigma factor SigM; Provisional |
46-209 |
2.00e-22 |
|
RNA polymerase sigma factor SigM; Provisional
Pssm-ID: 170033 [Multi-domain] Cd Length: 165 Bit Score: 89.17 E-value: 2.00e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 46 ELVQAHADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSYRPGTFEGWLHRITTNLFLDMVR-HRQVIRMEAlpenyD 124
Cdd:PRK09644 5 EIYKMYINDVYRYLFSLTKSHHAAEDLLQETFYRAYIYLEDYDNQKVKPWLFKVAYHTFIDFVRkEKKVSFVGT-----D 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 125 RVPGTLKT-PEQAVDDAMLDPDLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLRATLERL 203
Cdd:PRK09644 80 EIEAIQAEsTEEYVVAKNSYEKLIQIIHTLPVIEAQAILLCDVHELTYEEAASVLDLKLNTYKSHLFRGRKRLKALLKEE 159
|
....*.
gi 896182377 204 EKERQE 209
Cdd:PRK09644 160 KSQNDK 165
|
|
| PRK12518 |
PRK12518 |
RNA polymerase sigma factor; Provisional |
39-201 |
3.91e-22 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237124 [Multi-domain] Cd Length: 175 Bit Score: 88.62 E-value: 3.91e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 39 GEMPSWSELVQAHADSVYGLAYRLTGNQQdAEDLTQETFMRVFRSLKSYR-PGTFEGWLHRITTNLFLDMvRHRQVIRME 117
Cdd:PRK12518 8 GDRQSFRQLYRRYQQKVRSTLYQLCGREL-LDDLVQEVFLRVWKGLPKLRnPAYFSTWLYRITWNVATDA-RRQFAQRPS 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 118 ALPEnyDRVPGTLKTPEQAVDDAMLD-PDL-EIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSS 195
Cdd:PRK12518 86 RIQD--DSLNDQPSRPSDTPDLMQLHyQDLvQQGLQTLSLEHRAVLVLHDLEDLPQKEIAEILNIPVGTVKSRLFYARRQ 163
|
....*.
gi 896182377 196 LRATLE 201
Cdd:PRK12518 164 LRKFLQ 169
|
|
| PRK09415 |
PRK09415 |
RNA polymerase factor sigma C; Reviewed |
45-201 |
9.22e-22 |
|
RNA polymerase factor sigma C; Reviewed
Pssm-ID: 181835 [Multi-domain] Cd Length: 179 Bit Score: 87.88 E-value: 9.22e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 45 SELVQAHADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSYR-PGTFEGWLHRITTNLFLDMVR---HRQVIRMEalp 120
Cdd:PRK09415 19 DEIMNEYGQEVLQLVYSYVKNKEVAEDLTQEIFVKCYKSLHTYKgKSSLKTWLYRIAINHCKDYLKswhNKKVIVTE--- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 121 ENYDRVPGTLKTPEQAVDDAMLDPDLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLRATL 200
Cdd:PRK09415 96 DIFTYMESQKESVEEEVIQNAEDERLASAVMSLPIKYREVIYLFYYEELSIKEIAEVTGVNENTVKTRLKKAKELLKKGL 175
|
.
gi 896182377 201 E 201
Cdd:PRK09415 176 E 176
|
|
| PRK09645 |
PRK09645 |
ECF RNA polymerase sigma factor SigL; |
51-201 |
1.25e-21 |
|
ECF RNA polymerase sigma factor SigL;
Pssm-ID: 236605 [Multi-domain] Cd Length: 173 Bit Score: 87.44 E-value: 1.25e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 51 HADSVYGLAYRLTGNQQDAEDLTQETFMRVFR-------SLKSYRPgtfegWLHRITTNLFLDMVRHRQVIRMEALPEny 123
Cdd:PRK09645 18 HAAPLWRYALRLTGDRARAEDVVQETLLRAWQhpevladTGRSARA-----WLFTVARNLVIDERRSARARPVEGGDD-- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 124 drvpgTLKTPEQAVDD----AMLDPDLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLRAT 199
Cdd:PRK09645 91 -----VLGVPEQSAPDevdrALDRLLVADALAQLSPEHRAVLVRSYYRGWSTAQIAADLGIPEGTVKSRLHYALRALRLA 165
|
..
gi 896182377 200 LE 201
Cdd:PRK09645 166 LQ 167
|
|
| PRK12540 |
PRK12540 |
RNA polymerase sigma factor; Provisional |
42-200 |
7.48e-21 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183579 [Multi-domain] Cd Length: 182 Bit Score: 85.79 E-value: 7.48e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 42 PSWSELVQAHADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSYRPGT-FEGWLHRITTNLFLDMVRHRQvirmEALP 120
Cdd:PRK12540 5 DSLRDDILAAVPSLRAFAISLSGNGDRADDLVQETLLRALANIDSFQPGSnLPAWLFTILRNLFRSDYRKRR----REVE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 121 ENYDRVPGTLKTpeQAVDDAMLD-PDLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLRAT 199
Cdd:PRK12540 81 DADGSYAKTLKS--QPGQNAHLEfEEFRAALDKLPQDQREALILVGASGFSYEDAAAICGCAVGTIKSRVNRARSKLSAL 158
|
.
gi 896182377 200 L 200
Cdd:PRK12540 159 L 159
|
|
| PRK12513 |
PRK12513 |
RNA polymerase sigma factor; Provisional |
39-200 |
6.02e-20 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183566 [Multi-domain] Cd Length: 194 Bit Score: 83.59 E-value: 6.02e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 39 GEMPSWSELVQAHADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSYRP-GTFEGWLHRITTNLFLDmvRHRQVIRME 117
Cdd:PRK12513 23 GDAAAFEALYARHRTGLYRFLLRLARDRALAEDIFQETWLRVIRARAQYQPrARFRTWLYQIARNLLID--HWRRHGARQ 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 118 ALPENYDR----VPGTLKTPEQAVDDAMLDPDLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRAR 193
Cdd:PRK12513 101 APSLDADEqlhaLADDGAAPEQQLSLFRDRRRLQAALETLPDEQREVFLLREHGDLELEEIAELTGVPEETVKSRLRYAL 180
|
....*..
gi 896182377 194 SSLRATL 200
Cdd:PRK12513 181 QKLRELL 187
|
|
| Sigma70_r2 |
pfam04542 |
Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. ... |
47-112 |
7.33e-20 |
|
Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. All members of this class of sigma-factor contain region 2. The high conservation is due to region 2 containing both the -10 promoter recognition helix and the primary core RNA polymerase binding determinant. The core binding helix, interacts with the clamp domain of the largest polymerase subunit, beta prime. The aromatic residues of the recognition helix, found at the C-terminus of this domain are though to mediate strand separation, thereby allowing transcription initiation.
Pssm-ID: 427998 [Multi-domain] Cd Length: 71 Bit Score: 79.94 E-value: 7.33e-20
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 896182377 47 LVQAHADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSYRPG---TFEGWLHRITTNLFLDMVRHRQ 112
Cdd:pfam04542 1 LVERYLPLVYSLARRYLGDGADAEDLVQEGFLGLWRAIERFDPErgvSFSTWLYTIIRNAIIDYLRKQR 69
|
|
| PRK12533 |
PRK12533 |
RNA polymerase sigma factor; Provisional |
46-200 |
2.55e-19 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237129 [Multi-domain] Cd Length: 216 Bit Score: 82.47 E-value: 2.55e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 46 ELVQAHADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSYRPGTFEGWLHRITTNLFLDMVRHRQVIRMEALPENYD- 124
Cdd:PRK12533 22 QLVLPHLDAAYNLARWLCGNASDADDVVQEACMRALRFFDSFRGDNARPWLLAIVRHTWYSEWRRRANAHEVAAPDTLDd 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 125 --RVPGTLKTPEQAVDDAMLDPDLEI---ALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLRAT 199
Cdd:PRK12533 102 adSLDDWQPAGEDPLALLLRAEDVRLvnaALAKLPVEYREVLVLRELEDMSYREIAAIADVPVGTVMSRLARARRRLAAL 181
|
.
gi 896182377 200 L 200
Cdd:PRK12533 182 L 182
|
|
| PRK08241 |
PRK08241 |
RNA polymerase subunit sigma-70; |
39-198 |
4.36e-19 |
|
RNA polymerase subunit sigma-70;
Pssm-ID: 236196 [Multi-domain] Cd Length: 339 Bit Score: 83.83 E-value: 4.36e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 39 GEMPSWSELVQAHADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSYRP-GTFEGWLHRITTNLFLDMVRHRQ--VIR 115
Cdd:PRK08241 16 GDRDAFAALVEPHRRELLAHCYRMLGSVHDAEDAVQETLLRAWRGYDRFEGrSSLRTWLYRIATNVCLDALEGRArrPLP 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 116 MEALPENYDRVPGTLKTPEQA---------VDDAMLDPD--------LEIA-LAELQ---PDYRAVVVLCDVVGLTYEEI 174
Cdd:PRK08241 96 TDLGAPAADPVDELVERPEVPwlepypdalLDPAAADPAarvvaresVRLAfVAALQhlpPRQRAVLILRDVLGWSAAEV 175
|
170 180
....*....|....*....|....
gi 896182377 175 ASTLGLKMGTVRSRIHRARSSLRA 198
Cdd:PRK08241 176 AELLDTSVAAVNSALQRARATLAE 199
|
|
| PRK12517 |
PRK12517 |
RNA polymerase sigma factor; Provisional |
47-208 |
2.21e-18 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183569 [Multi-domain] Cd Length: 188 Bit Score: 79.35 E-value: 2.21e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 47 LVQA-HADsVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSYR-PGTFEGWLhrITtnlfldMVRHRQVIRMEALPENYD 124
Cdd:PRK12517 28 LVKAlHAD-IYRYAYWLCKDKHIAEDLVQETFLRAWRSLDSLKdEKAAKAWL--IT------ILRRENARRFERKQFDLV 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 125 RVpgtlkTPEQAVDDAMLDPDLEIA-------LAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLR 197
Cdd:PRK12517 99 DI-----EDDSIEDDASHSSEEEMEqewlrrqIAKLDPEYREPLLLQVIGGFSGEEIAEILDLNKNTVMTRLFRARNQLK 173
|
170
....*....|.
gi 896182377 198 ATLERLEKERQ 208
Cdd:PRK12517 174 EALEKPDVQRG 184
|
|
| PRK09637 |
PRK09637 |
RNA polymerase sigma factor SigZ; Provisional |
65-208 |
3.52e-18 |
|
RNA polymerase sigma factor SigZ; Provisional
Pssm-ID: 236601 [Multi-domain] Cd Length: 181 Bit Score: 78.49 E-value: 3.52e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 65 NQQDAEDLTQETFMRVFRSLKSYRPGT-FEGWLHRITTNLFLDMVRHRQviRMEALPEN---YDRVPGtlktpEQAVDDa 140
Cdd:PRK09637 24 NEADVDDLLQEVLIKTHSNLHSLKDGSsIKSWLYQIANNTIIDFYRKKN--RSEELPDDllfEDEERE-----ENAKKE- 95
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 896182377 141 mLDPDLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLRATLE---RLEKERQ 208
Cdd:PRK09637 96 -LAPCLRPFIDALPEKYAEALRLTELEGLSQKEIAEKLGLSLSGAKSRVQRGRVKLKELLEgccDFEIDRQ 165
|
|
| SigX4 |
TIGR02957 |
RNA polymerase sigma-70 factor, TIGR02957 family; This group of sigma factors are members of ... |
46-212 |
5.91e-18 |
|
RNA polymerase sigma-70 factor, TIGR02957 family; This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Pssm-ID: 132002 [Multi-domain] Cd Length: 281 Bit Score: 80.09 E-value: 5.91e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 46 ELVQAHADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSyRPGTFEGWLHRITTNLFLDMVR----HRQVIRMEALPE 121
Cdd:TIGR02957 1 EEFEALRPLLFSLAYRMLGSVADAEDIVQETFLRWQEADRA-QIENPKAYLTKVVTRRCIDVLRsaraRREVYVGPWLPE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 122 NydrVPGTLKTPEQAVDDAmldPDLEIA----LAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLR 197
Cdd:TIGR02957 80 P---LLTTSADPAESVELA---ESLSMAylllLERLSPLERAVFVLREVFDYPYEEIASIVGKSEANCRQLVSRARRHLD 153
|
170
....*....|....*...
gi 896182377 198 ATLERLE---KERQELPE 212
Cdd:TIGR02957 154 ARRPRFEvsrEESRQLLE 171
|
|
| algU |
PRK11923 |
RNA polymerase sigma factor AlgU; Provisional |
47-206 |
2.15e-17 |
|
RNA polymerase sigma factor AlgU; Provisional
Pssm-ID: 171347 [Multi-domain] Cd Length: 193 Bit Score: 76.76 E-value: 2.15e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 47 LVQAHADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSYR-PGTFEGWLHRITTNLFLD--MVRHRQVIRMEALPENY 123
Cdd:PRK11923 25 LVLKYQHKILGLIVRFVHDTAEAQDVAQEAFIKAYRALGNFRgDSAFYTWLYRIAINTAKNhlVSRGRRPPDSDVSSEDA 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 124 DRVPGT-----LKTPEQAVDDAMLDPDLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLRA 198
Cdd:PRK11923 105 EFYDGDhalkdIESPERALLRDEIEGTVHRTIQQLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFRAREAIDK 184
|
....*...
gi 896182377 199 TLERLEKE 206
Cdd:PRK11923 185 ALQPLLQE 192
|
|
| PRK12519 |
PRK12519 |
RNA polymerase sigma factor; Provisional |
51-203 |
2.57e-17 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237125 [Multi-domain] Cd Length: 194 Bit Score: 76.64 E-value: 2.57e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 51 HADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSlKSYRP--GTFEGWLHRITTNLFLDMVRHRQviRMEALPENYDRVPG 128
Cdd:PRK12519 38 HAGLVYGLALKILGNSQEAEDLTQEIFLSLWRK-SSYDPkrGSLSSYLLTLTRSRAIDRLRSRR--SRQRLLERWQQELL 114
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 896182377 129 TLKTPEQAVDDAMLDP---DLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLRATLERL 203
Cdd:PRK12519 115 GEASEDTPLEQASLAErsqRVQTALAQLPESQRQVLELAYYEGLSQSEIAKRLGIPLGTVKARARQGLLKLRELLQDL 192
|
|
| PRK12541 |
PRK12541 |
RNA polymerase sigma factor; Provisional |
43-201 |
9.61e-17 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183580 [Multi-domain] Cd Length: 161 Bit Score: 74.20 E-value: 9.61e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 43 SWSELVQAHADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSYRPGTFEGWLHRITTNLFLDMVRHRQVIRMEALPEN 122
Cdd:PRK12541 6 SLEEIYSEHMQDLFRYLLSLTGDSHFAEDLMQETFYRMLVHIDYYKGEEIRPWLFTIAYNAFIDWYRKEKKYKTTTIEEF 85
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 896182377 123 YdrVPGTLKTPEQAVDDAMLDPDLEiALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLRATLE 201
Cdd:PRK12541 86 H--LPNVPSTEHEYFIKHEIASWLD-SLSSLPLERRNVLLLRDYYGFSYKEIAEMTGLSLAKVKIELHRGRKETKSIKE 161
|
|
| PRK12534 |
PRK12534 |
RNA polymerase sigma factor; Provisional |
28-202 |
5.99e-16 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183576 [Multi-domain] Cd Length: 187 Bit Score: 72.78 E-value: 5.99e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 28 LSGTAAfdagvGEMPSWSELVQAHADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSYRPGTFEG--WLHRITTNLFL 105
Cdd:PRK12534 16 LTATAG-----GDRHAFEALYRQTSPKLFGVCLRMIPQRAEAEEVLQDVFTLIWHKAGQFDPSRARGltWLAMIARNKAI 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 106 DMVRHRQVIRMEALPENYDRVPGTLKTPEQAVDDAMLDPDLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTV 185
Cdd:PRK12534 91 DHLRANAPQRRNVALDDAGELRAADASPLERTERASTRRRIDHCLAELEPPRSELIRTAFFEGITYEELAARTDTPIGTV 170
|
170
....*....|....*..
gi 896182377 186 RSRIHRARSSLRATLER 202
Cdd:PRK12534 171 KSWIRRGLAKLKACLER 187
|
|
| PRK09639 |
PRK09639 |
RNA polymerase sigma factor SigX; Provisional |
42-206 |
6.36e-16 |
|
RNA polymerase sigma factor SigX; Provisional
Pssm-ID: 236602 [Multi-domain] Cd Length: 166 Bit Score: 72.29 E-value: 6.36e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 42 PSWSELVQAHADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSYRpGTFEGWLHRITTNLFLDMVRHRQVIRMEALpe 121
Cdd:PRK09639 3 ETFEDLFEQYYPDVVQQIFYIVKDRTQAEDLAQEVFLRLYRSDFKGI-ENEKGWLIKSARNVAYNYLRSEKRRRARIL-- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 122 nydrvpgtlKTPEQAVDDAMLDPDlEIA------------LAELQPDYRAVVVLcDVVGLTYEEIASTLGLKMGTVRSRI 189
Cdd:PRK09639 80 ---------GEFQWQEVDNEPSPE-EIWirkeeitkvqevLAKMTERDRTVLLL-RFSGYSYKEIAEALGIKESSVGTTL 148
|
170
....*....|....*..
gi 896182377 190 HRARSSLRATLERLEKE 206
Cdd:PRK09639 149 ARAKKKFRKIYEQMEEE 165
|
|
| PRK12538 |
PRK12538 |
RNA polymerase sigma factor; Provisional |
1-206 |
1.01e-15 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 139048 [Multi-domain] Cd Length: 233 Bit Score: 72.97 E-value: 1.01e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 1 MPERVKSERVSAGASREDAASADVTEQLSGTAAFDAGVGEMpswseLVQAHADSVYGLAYRLTGNQQDAEDLTQETFMRV 80
Cdd:PRK12538 27 APDAASVSIVPDPPPVADAVFDEDEELLDRLATDDEAAFRL-----LVERHIDRAYAIALRIVGNRADAEDVVQDTMLKV 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 81 FRSLKSYRPG--TFEGWLHRITTNLFLDMVRHRQVIRMEALPENYDRVPGTLKTPEQAVDDAMldpdLEIALAELQPDYR 158
Cdd:PRK12538 102 WTHRGRWQHGraKFSTWLYRVVSNRCIDLRRKPRTENVDAVPEVADGKPDAVSVIERNELSDL----LEAAMQRLPEQQR 177
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 896182377 159 AVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLRATLERLEKE 206
Cdd:PRK12538 178 IAVILSYHENMSNGEIAEVMDTTVAAVESLLKRGRQQLRDLLRRHERD 225
|
|
| PRK12516 |
PRK12516 |
RNA polymerase sigma factor; Provisional |
38-201 |
1.03e-15 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183568 [Multi-domain] Cd Length: 187 Bit Score: 72.31 E-value: 1.03e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 38 VGEMPSWSELVQAHADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSYRPGT-FEGWLHRITTNLFLDMVRH--RQVI 114
Cdd:PRK12516 6 VEGTPPFKRELLAALPSLRAFAVSLIGRHDRADDLVQDTIMKAWAKQDHFEVGTnMKAWLFTILRNEFYSQMRKrgREVQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 115 RMEAL--------PENYdrvpGTLKTPeqavddamldpDLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVR 186
Cdd:PRK12516 86 DTDGMfteqlavhPSQY----GTLDLQ-----------DFRAALDQLPDDQREAIILVGASGFAYEEAAEICGCAVGTIK 150
|
170
....*....|....*
gi 896182377 187 SRIHRARSSLRATLE 201
Cdd:PRK12516 151 SRVNRARQRLQEILQ 165
|
|
| PRK12511 |
PRK12511 |
RNA polymerase sigma factor; Provisional |
59-198 |
1.04e-15 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237123 [Multi-domain] Cd Length: 182 Bit Score: 72.13 E-value: 1.04e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 59 AYRLTGNQQDAEDLTQETFMRVFRSLKSYRPGT-FEGWLHRITTNLFLDMVRHRQVIRMEALPENYDRVPGTLKTPEQAV 137
Cdd:PRK12511 21 ARSLTRDSAEAEDLVHDALVRALERRASFRSGGnLRTWLMSILHNAFIDELRRRRVEARRADELAVLADASLPAAQEHAV 100
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 896182377 138 DDAmldpDLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLRA 198
Cdd:PRK12511 101 RLA----QIRDAFFDLPEEQRAALHLVAIEGLSYQEAAAVLGIPIGTLMSRIGRARAALRA 157
|
|
| PRK12546 |
PRK12546 |
RNA polymerase sigma factor; Provisional |
46-217 |
1.07e-15 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 139055 [Multi-domain] Cd Length: 188 Bit Score: 72.18 E-value: 1.07e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 46 ELVQaHADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSYRPGT-FEGWLHRITTNLFLDMVRH--RQVirmealpEN 122
Cdd:PRK12546 12 ELVE-HLPALRAFAISLTRNVAVADDLVQDTIVKAWTNFDKFQEGTnLRAWLFTILRNTFYSDRRKhkREV-------PD 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 123 YDRVPGTLKTPEQAVDDAMLDPDLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLRATLER 202
Cdd:PRK12546 84 PEGVHAASLAVKPAHDGRLAMSDFRAAFAQLPDEQREALILVGASGFSYEEAAEMCGVAVGTVKSRANRARARLAELLQL 163
|
170
....*....|....*
gi 896182377 203 LEKERQELPESVTAG 217
Cdd:PRK12546 164 EEGEELEMTDGATLA 178
|
|
| sigI |
PRK09635 |
RNA polymerase sigma factor SigI; Provisional |
45-199 |
1.92e-15 |
|
RNA polymerase sigma factor SigI; Provisional
Pssm-ID: 182008 [Multi-domain] Cd Length: 290 Bit Score: 73.08 E-value: 1.92e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 45 SELVQAHADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSyRPGTFEGWLHRITTNLFLDMVRHRQVIRME----ALP 120
Cdd:PRK09635 8 SAAWRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAPVG-DIDDERGWLIVVTSRLCLDHIKSASTRRERpqdiAAW 86
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 896182377 121 ENYDRVPGTLKTPEQAVDDAMLDPDLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLRAT 199
Cdd:PRK09635 87 HDGDASVSSVDPADRVTLDDEVRLALLIMLERLGPAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINES 165
|
|
| PRK09636 |
PRK09636 |
RNA polymerase sigma factor SigJ; Provisional |
56-209 |
2.46e-15 |
|
RNA polymerase sigma factor SigJ; Provisional
Pssm-ID: 236600 [Multi-domain] Cd Length: 293 Bit Score: 73.03 E-value: 2.46e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 56 YGLAYRLTGNQQDAEDLTQETFMRvFRSLKSYRPGTFEGWLHRITTNLFLDMVR----HRQVIRMEALPENydrVPGTLK 131
Cdd:PRK09636 18 LSVAYRMLGSVADAEDIVQEAWLR-WNNADRAQIRDPRAWLTRVVTRLCLDRLRsarhRRETYVGPWLPEP---VVEELD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 132 TPEQAV---DDAMLDpdLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLRAT--LERLEKE 206
Cdd:PRK09636 94 DPLEAVvaaEDLSLA--LMLALERLSPLERAAFLLHDVFGVPFDEIASTLGRSPAACRQLASRARKHVRAArpRFPVSDE 171
|
...
gi 896182377 207 RQE 209
Cdd:PRK09636 172 EGA 174
|
|
| PRK12524 |
PRK12524 |
RNA polymerase sigma factor; Provisional |
46-201 |
3.52e-15 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183573 [Multi-domain] Cd Length: 196 Bit Score: 71.07 E-value: 3.52e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 46 ELVQAHADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSYRPGT--FEGWLHRITTNLFLDMVRH--RQVIRMEALPE 121
Cdd:PRK12524 30 ALTLRLAPRALAVATRVLGDRAEAEDVTQEAMLRLWRIAPDWRQGEarVSTWLYRVVCNLCTDRLRRrrRASVDLDDAPE 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 122 NYDRVPGTLktpEQAVDDAMLDPdLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLRATLE 201
Cdd:PRK12524 110 PADAAPGAE---EALIEGDRMRA-LDAALAALPERQRQAVVLRHIEGLSNPEIAEVMEIGVEAVESLTARGKRALAALLA 185
|
|
| PRK12522 |
PRK12522 |
RNA polymerase sigma factor; Provisional |
46-201 |
3.98e-15 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183571 [Multi-domain] Cd Length: 173 Bit Score: 70.28 E-value: 3.98e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 46 ELVQAHADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSYR-PGTFEGWLHRITTNLFLDMVRHRQ----VIRMEALP 120
Cdd:PRK12522 7 ELIDIYKQQIYSLCYKLAKTKEDAEDIFQETWIKVFSSRHQLSyVENYKKWITTICVRTFYDFYRKKKrwkdRILDLFHK 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 121 ENYDRV--PGTLKTPE---QAVDDAMLdpdlEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSS 195
Cdd:PRK12522 87 EDGGEIefADDVNISEefiQKVEAEMI----REVIQLLNEKYKTVLVLYYYEQYSYKEMSEILNIPIGTVKYRLNYAKKQ 162
|
....*.
gi 896182377 196 LRATLE 201
Cdd:PRK12522 163 MREHLE 168
|
|
| PRK12543 |
PRK12543 |
RNA polymerase sigma factor; Provisional |
39-210 |
4.39e-15 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183582 [Multi-domain] Cd Length: 179 Bit Score: 70.15 E-value: 4.39e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 39 GEMPSWSELVQAHADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSY---RPgtFEGWLHRITTNLFLDMVRHR---- 111
Cdd:PRK12543 4 GDQEAFSEIYDVTIQEVYKTVHFLVEDKQDVDDVVNEIYIQLWESLRKYdsnRP--FRFWLIGLVIKQIHSWRRKRwrrf 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 112 ---QVIRMEALPENYDrvpgtlkTPEQAVDDAMlDPDLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSR 188
Cdd:PRK12543 82 rifEKAEEQRKPVSID-------FSEDVLSKES-NQELIELIHKLPYKLRQVIILRYLHDYSQEEIAQLLQIPIGTVKSR 153
|
170 180
....*....|....*....|..
gi 896182377 189 IHRARSSLRATLERLEKERQEL 210
Cdd:PRK12543 154 IHAALKKLRQKEQIEEIFLGEV 175
|
|
| PRK12535 |
PRK12535 |
RNA polymerase sigma factor; Provisional |
33-196 |
1.32e-14 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237130 [Multi-domain] Cd Length: 196 Bit Score: 69.54 E-value: 1.32e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 33 AFDAGVGEMPSWSELVQAHADSVYGLAYRLTGNQQdAEDLTQETFMRVFRSLKSYRP-GTFEGWLHRITTNLFLDMVRHr 111
Cdd:PRK12535 16 ALAAGRGDRAALTEFIRETQDDVWRLLAHLGGHDI-ADDLTQETYLRVMSALPRFAArSSARTWLLSLARRVWVDNIRH- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 112 QVIRMEALPENYDRVPGTLKTPEQAVDDAMLdPDLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHR 191
Cdd:PRK12535 94 DMARPRKSATEYEDAAATTASNETTGSWSEW-IDVRTLIDALPPERREALILTQVLGYTYEEAAKIADVRVGTIRSRVAR 172
|
....*
gi 896182377 192 ARSSL 196
Cdd:PRK12535 173 ARADL 177
|
|
| PRK12547 |
PRK12547 |
RNA polymerase sigma factor; Provisional |
54-200 |
1.75e-14 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 139056 [Multi-domain] Cd Length: 164 Bit Score: 68.36 E-value: 1.75e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 54 SVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSYRPGT-FEGWLHRITTNLFLDMVRH--RQVIRMEALPENYDRVPgtl 130
Cdd:PRK12547 18 ALRAFAVSLSSKHDKAEDLVQDTLMKAWAKQDSFEMGTnLKAWLFTILRNEFYSQMRKrgREVQDSDGVFTARVAVH--- 94
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 896182377 131 ktPEQavdDAMLD-PDLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLRATL 200
Cdd:PRK12547 95 --PAQ---YGSLDlQDFKKALNLLSADQREAIILIGASGFSYEDAAAICGCAVGTIKSRVSRARNRLQELL 160
|
|
| PRK12542 |
PRK12542 |
RNA polymerase sigma factor; Provisional |
46-214 |
5.34e-14 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183581 [Multi-domain] Cd Length: 185 Bit Score: 67.38 E-value: 5.34e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 46 ELVQAHADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSLK---SYRPGTFEGWLHRITTNLFLDMVRHRQviRMEALPEN 122
Cdd:PRK12542 13 ELYELYEQKVYYVAYSILNNIQQAEDAVQETFITLYKNLEklhSLNTQELKRYILRVAKNKAIDSYRKNK--RHETFLEE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 123 YDR--VPGTLKTPEQAVDDAMLDPDLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLRATL 200
Cdd:PRK12542 91 YEResIEAVDENIEEWEKRKMSEVQIDTLLKELNESNRQVFKYKVFYNLTYQEISSVMGITEANVRKQFERARKRVQNMI 170
|
170
....*....|....*
gi 896182377 201 ERLEK-ERQELPESV 214
Cdd:PRK12542 171 GGIQHdEFKELQRNI 185
|
|
| PRK13919 |
PRK13919 |
putative RNA polymerase sigma E protein; Provisional |
39-200 |
2.16e-13 |
|
putative RNA polymerase sigma E protein; Provisional
Pssm-ID: 184395 [Multi-domain] Cd Length: 186 Bit Score: 65.71 E-value: 2.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 39 GEMPSWSELVQAHADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSYRP--GTFEGWLHRITTNLFLDMVRHRQViRM 116
Cdd:PRK13919 20 GEEEALRALFRRYAGAFLALARRMGLDGAAAEDVVQEVFIRVWKKAKEFDPrrGSARAWLLALAHHAAVDHVRRRAA-RP 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 117 EAL------PENYDrVPGTLKTPEQAVDDAMLdpdlEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIH 190
Cdd:PRK13919 99 QPLepderePEAFD-LPGPGLDEEGHLDRTRL----GRALKALSPEERRVIEVLYYQGYTHREAAQLLGLPLGTLKTRAR 173
|
170
....*....|
gi 896182377 191 RARSSLRATL 200
Cdd:PRK13919 174 RALSRLKEVL 183
|
|
| PRK09640 |
PRK09640 |
RNA polymerase sigma factor SigX; Reviewed |
44-213 |
2.58e-13 |
|
RNA polymerase sigma factor SigX; Reviewed
Pssm-ID: 236603 [Multi-domain] Cd Length: 188 Bit Score: 65.73 E-value: 2.58e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 44 WSELVQAHADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSYR-PGTFEGWLHRITTNLFLDMVRHRQVIRMEALPEN 122
Cdd:PRK09640 28 YEELMRRYQRTLFNVCARYLGNDRDADDVCQEVMLKVLYGLKNFEgKSKFKTWLYSITYNECITQYRKERRKRRLMDALS 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 123 YDRVpgtlktpEQAVDDAMLDPDLEIAL----AELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRArsslra 198
Cdd:PRK09640 108 LDPL-------EEASEEKAPKPEERGGLdrwlVHVNPIDREILVLRFVAELEFQEIADIMHMGLSATKMRYKRA------ 174
|
170
....*....|....*
gi 896182377 199 tLERLEKERQELPES 213
Cdd:PRK09640 175 -LDKLREKFAGLAET 188
|
|
| PRK12514 |
PRK12514 |
RNA polymerase sigma factor; Provisional |
37-202 |
4.33e-13 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 105710 [Multi-domain] Cd Length: 179 Bit Score: 64.84 E-value: 4.33e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 37 GVGEMPSWSELVQAHADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSYRPGTFE--GWLHRITTNLFLDMVRHRQVI 114
Cdd:PRK12514 14 SLGDRDAFSSLYDATSAKLFGICLRVLKDRSEAEEALQDVYVKIWTKADRFAVSGLSpmTWLITIARNHAIDRLRARKAV 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 115 RMEaLPENYDRVPGTlKTPEQAVDDAMLDPDLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARS 194
Cdd:PRK12514 94 AVD-IDEAHDLADPS-PGPEAEVIAGDEGQRIDACLEELEKDRAAAVRRAYLEGLSYKELAERHDVPLNTMRTWLRRSLL 171
|
....*...
gi 896182377 195 SLRATLER 202
Cdd:PRK12514 172 KLRECLSR 179
|
|
| PRK12515 |
PRK12515 |
RNA polymerase sigma factor; Provisional |
51-207 |
6.72e-13 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183567 [Multi-domain] Cd Length: 189 Bit Score: 64.37 E-value: 6.72e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 51 HADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSlksyrPGTFEG------WLHRITTNLFLDMVRHRQVIRMEalPENYD 124
Cdd:PRK12515 31 HHVRVYRFGLRLVRDEQTAEDLVSEVFLDVWRQ-----AGQFEGrsqvstWLLSIARFKALSALRRRKHEEID--DEAAA 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 125 RVPGTLKTPEQAVDDAMLDPDLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLRATLERLE 204
Cdd:PRK12515 104 AIEDGADTPEVALQKSDTSAALRACLAKLSPAHREIIDLVYYHEKSVEEVGEIVGIPESTVKTRMFYARKKLAELLKAAG 183
|
...
gi 896182377 205 KER 207
Cdd:PRK12515 184 VER 186
|
|
| Sigma70_r4_2 |
pfam08281 |
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 ... |
149-196 |
8.33e-13 |
|
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif.
Pssm-ID: 400535 [Multi-domain] Cd Length: 54 Bit Score: 60.93 E-value: 8.33e-13
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 896182377 149 ALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSL 196
Cdd:pfam08281 7 ALEELPPRQREVFLLRYLEGLSYAEIAELLGISEGTVKSRLSRARKKL 54
|
|
| PRK09649 |
PRK09649 |
RNA polymerase sigma factor SigC; Reviewed |
33-202 |
6.65e-12 |
|
RNA polymerase sigma factor SigC; Reviewed
Pssm-ID: 137458 [Multi-domain] Cd Length: 185 Bit Score: 61.98 E-value: 6.65e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 33 AFDAGVGEMPSWSELVQAHADSVYGLAYRLTgNQQDAEDLTQETFMRVFRSLKSYRP-GTFEGWLHRITTNLFLDMVRHR 111
Cdd:PRK09649 15 ALSAAKGNGRALEAFIKATQQDVWRFVAYLS-DVGSADDLTQETFLRAIGAIPRFSArSSARTWLLAIARHVVADHIRHV 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 112 QViRMEALPENYDRVPGTLKTPEQAVDDAMldpDLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHR 191
Cdd:PRK09649 94 RS-RPRTTRGARPEHLIDGDRHARGFEDLV---EVTTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVAR 169
|
170
....*....|.
gi 896182377 192 ARSSLRATLER 202
Cdd:PRK09649 170 ARDALLADAEP 180
|
|
| PRK12537 |
PRK12537 |
RNA polymerase sigma factor; Provisional |
39-201 |
1.54e-11 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 171568 [Multi-domain] Cd Length: 182 Bit Score: 60.56 E-value: 1.54e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 39 GEMPSWSELVQAHADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSYRP--GTFEGWLHRITTNLFLDMVRHRQvirm 116
Cdd:PRK12537 20 GDRRALQALYQQESARLLGVARRIVRDRALAEDIVHDAFIKIWTGAASFDParGSARGWIYSVTRHLALNVLRDTR---- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 117 EALPENYDRVPgTLKTPEQAVD--DAMLDP-DLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRAR 193
Cdd:PRK12537 96 REVVLDDDAEE-TAQTLHEIIDdfDLWANSgKIHRCLEQLEPARRNCILHAYVDGCSHAEIAQRLGAPLGTVKAWIKRSL 174
|
....*...
gi 896182377 194 SSLRATLE 201
Cdd:PRK12537 175 KALRECMG 182
|
|
| Sigma70_r4 |
cd06171 |
Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in ... |
145-197 |
8.21e-11 |
|
Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplasmic stress and pathogenesis. Ec sigmaE SR4 also contacts the -35 element, but recognizes a different consensus (a 7-base-pair GGAACTT). Plant SFs recognize sigma70 type promoters and direct transcription of the major plastid RNA polymerase, plastid-encoded RNA polymerase (PEP).
Pssm-ID: 100119 [Multi-domain] Cd Length: 55 Bit Score: 55.57 E-value: 8.21e-11
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 896182377 145 DLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLR 197
Cdd:cd06171 3 RLEEALDKLPEREREVILLRFGEGLSYEEIAEILGISRSTVRQRLHRALKKLR 55
|
|
| Sig-70_gvs1 |
TIGR02989 |
RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family; This group of sigma ... |
47-198 |
1.84e-10 |
|
RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family; This group of sigma factors are members of the sigma-70 family (TIGR02937) and are abundantly found in the species Rhodopirellula baltica (11), and Verrucomicrobium spinosum (16) and to a lesser extent in Gemmata obscuriglobus (2).
Pssm-ID: 274379 [Multi-domain] Cd Length: 159 Bit Score: 57.33 E-value: 1.84e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 47 LVQAHADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSYRPGT-FEGWLHRITTNLFL----DMVRHRQVIRMEAL-- 119
Cdd:TIGR02989 6 LLTRHERALRAFVRSLVADRDDVDDVLQETFVVAWRKFDQFDPGTnFVAWARGIARNKVLnyrrKLGRDRLVFDDDLLea 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 120 --PENYDRVPGTLKTPEQAvddamldpdLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLR 197
Cdd:TIGR02989 86 laAEAEPTEAERLSDDRQA---------LEGCLEKLPERQRELLDLRYQRGQKATALAEQTGRTVNAVYKALQRIRVSLR 156
|
.
gi 896182377 198 A 198
Cdd:TIGR02989 157 E 157
|
|
| PRK09646 |
PRK09646 |
ECF RNA polymerase sigma factor SigK; |
11-200 |
1.85e-09 |
|
ECF RNA polymerase sigma factor SigK;
Pssm-ID: 182015 [Multi-domain] Cd Length: 194 Bit Score: 55.06 E-value: 1.85e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 11 SAGASREDAASADVTEQLSGTAAfdagvGEMPSWSELVQAHADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSYRP- 89
Cdd:PRK09646 4 AVPMTGPPAESPDLDALLRRVAR-----GDQDAFAELYDRTSSRVYGLVRRVLRDPGYSEETTQEVYLEVWRTASRFDPa 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 90 -GTFEGWLhrittnlfLDMVRHRQVIRM---EALPENYDRVPGTLKTPE--QAVDDAMLDPDLEI---ALAELQPDYRAV 160
Cdd:PRK09646 79 rGSALAWL--------LTLAHRRAVDRVrseQAASQREVRYGARNVDPAfdQVAEEVEARLERERvrdCLDALTDTQRES 150
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 896182377 161 VVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLRATL 200
Cdd:PRK09646 151 VTLAYYGGLTYREVAERLAVPLGTVKTRMRDGLIRLRDCL 190
|
|
| PRK09642 |
PRK09642 |
RNA polymerase sigma factor; |
48-197 |
4.78e-09 |
|
RNA polymerase sigma factor;
Pssm-ID: 170031 [Multi-domain] Cd Length: 160 Bit Score: 53.57 E-value: 4.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 48 VQAHADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSYRPGTFEGWLHRITTNLFLDMVRH--RQVIRMEALPENYDR 125
Cdd:PRK09642 1 MQTYRHYIFQVIFSILRHEEDAKDVTQEVFVKIHASLPNYQFRGLKTWMARIATNHAIDYKRKkaRENEELSLCKETEEN 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 896182377 126 VPGTlktpeQAVDDAMLDPDLEIALA----ELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLR 197
Cdd:PRK09642 81 IKSS-----HNIEDLLLTKEQKLLIAqklrELPENYRDVVLAHYLEEKSYQEIALQEKIEVKTVEMKLYRARKWIK 151
|
|
| Sigma70_r4 |
pfam04545 |
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 ... |
149-198 |
5.30e-09 |
|
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.
Pssm-ID: 461347 [Multi-domain] Cd Length: 50 Bit Score: 50.50 E-value: 5.30e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 896182377 149 ALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLRA 198
Cdd:pfam04545 1 ALASLPPRERQVLVLRYGEGLTLEEIGERLGISRERVRQIEKRALRKLRK 50
|
|
| PRK12532 |
PRK12532 |
RNA polymerase sigma factor; Provisional |
69-202 |
6.31e-09 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 171564 [Multi-domain] Cd Length: 195 Bit Score: 53.78 E-value: 6.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 69 AEDLTQETFMRVFRSLKSYR-PGTFEGWLHRITTNLFLDMVRHR-------QVIRMEALPENYDRV------------PG 128
Cdd:PRK12532 33 AEDLVQETLLSAYSAGDSFQgRALVNSWLFAILKNKIIDALRQIgrqrkvfTLLDDELLDEAFESHfsqnghwtpegqPQ 112
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 896182377 129 TLKTPEQAVDDAMLDPDLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLRATLER 202
Cdd:PRK12532 113 HWNTPEKSLNNNEFQKILQSCLYNLPENTARVFTLKEILGFSSDEIQQMCGISTSNYHTIMHRARESLRQCLQI 186
|
|
| PRK12527 |
PRK12527 |
RNA polymerase sigma factor; Reviewed |
58-198 |
1.18e-08 |
|
RNA polymerase sigma factor; Reviewed
Pssm-ID: 171560 [Multi-domain] Cd Length: 159 Bit Score: 52.47 E-value: 1.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 58 LAYRLtGNQQDAEDLTQETFMRVFRSLKSYRPGTFEGWLHRITTNLFLDMVRHRQVIRMEALPENYDRVPGTLKTPEQAV 137
Cdd:PRK12527 12 LSARL-GNRQAAEDVAHDAYLRVLERSSSAQIEHPRAFLYRTALNLVVDRHRRHRVRQAEPLEVLDEEERLHSPSPQTRL 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 896182377 138 DDAMLDPDLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRA----RSSLRA 198
Cdd:PRK12527 91 DLGQRLALLQRALAELPPACRDSFLLRKLEGLSHQQIAEHLGISRSLVEKHIVNAmkhcRVRMRQ 155
|
|
| PRK09648 |
PRK09648 |
RNA polymerase sigma factor ShbA; |
61-202 |
4.39e-08 |
|
RNA polymerase sigma factor ShbA;
Pssm-ID: 236607 [Multi-domain] Cd Length: 189 Bit Score: 51.12 E-value: 4.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 61 RLTGNQQDAEDLTQETFMRVFRSLKSY----RPgtFEGWLHRITTNLFLD----MVRHRQViRMEALPENYDRVPGtlkt 132
Cdd:PRK09648 47 GVERPGLSADDVAQEVCLAVITALPRYrdqgRP--FLAFVYGIAAHKVADahraAGRDKAV-PTEEVPERPSDDAG---- 119
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 133 PEQAVDDAMLDPDLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLRATLER 202
Cdd:PRK09648 120 PEERALRSESSNRMRELLDTLPEKQREILILRVVVGLSAEETAEAVGSTPGAVRVAQHRALARLRAEIEA 189
|
|
| PRK12536 |
PRK12536 |
RNA polymerase sigma factor; Provisional |
61-200 |
2.66e-07 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237131 [Multi-domain] Cd Length: 181 Bit Score: 48.89 E-value: 2.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 61 RLTGNQQDAEDLTQETFMRVFRSLKSYRPGT-FEGWLHRITTNLFLDMVRHRQviRMEALPENYDRVPGTLKTPEQAVDD 139
Cdd:PRK12536 41 RLPQLPDEVEDLVQEILLAVHNARHTYRADQpLTAWVHAIARYKLMDFLRSRA--RREALHDPLDDESELFATSDDEAAE 118
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 896182377 140 AMLDpdLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLRATL 200
Cdd:PRK12536 119 ARRD--LGKLLEQLPDRQRLPIVHVKLEGLSVAETAQLTGLSESAVKVGIHRGLKALAAKI 177
|
|
| PRK12512 |
PRK12512 |
RNA polymerase sigma factor; Provisional |
68-200 |
7.95e-07 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 171551 [Multi-domain] Cd Length: 184 Bit Score: 47.77 E-value: 7.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 68 DAEDLTQETFMRVFRSLKSYRPGT-FEGWLHRITTNLFLDMVRHRQViRMEAlpeNYDRVPGTLKTPEQAvdDAMLDPDL 146
Cdd:PRK12512 52 QAEDIVQEILLAVHLKRHTWDPGApFAPWLFAIARNKLIDALRRRGR-RVFV---DIDDFAETLPAEPAT--ETLPAGDV 125
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 896182377 147 EIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLRATL 200
Cdd:PRK12512 126 GRHLETLPPRQRDVVQSISVEGASIKETAAKLSMSEGAVRVALHRGLAALAAKF 179
|
|
| PRK12544 |
PRK12544 |
RNA polymerase factor sigma-70; |
64-201 |
1.05e-06 |
|
RNA polymerase factor sigma-70;
Pssm-ID: 183583 [Multi-domain] Cd Length: 206 Bit Score: 47.49 E-value: 1.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 64 GNQQDAEDLTQETFMRVFRSLKSY-RPGTFEGWLHRITTNLFLDMVRHR-------QVIRMEALPENYDRV--------- 126
Cdd:PRK12544 40 SDLHLAEDAVQEALIGALKNADSFaGRAAFKTWVFAILKNKIIDLLRQKkrhvsasSLLRDEEEEEDFEELfdesghwqk 119
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 896182377 127 ---PGTLKTPEQAVDDAMLDPDLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLRATLE 201
Cdd:PRK12544 120 derPQAWGNPEESLEQEQFWRIFEACLDGLPAKYARVFMMREFIELETNEICHAVDLSVSNLNVLLYRARLRLRECLE 197
|
|
| PRK06930 |
PRK06930 |
positive control sigma-like factor; Validated |
116-193 |
2.99e-06 |
|
positive control sigma-like factor; Validated
Pssm-ID: 180757 [Multi-domain] Cd Length: 170 Bit Score: 45.88 E-value: 2.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 116 MEALPENYDRVPGTLKTPEQAV---DDAMLdpdlEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRA 192
Cdd:PRK06930 79 IQRYFRSMEDLEWDIEEPESVIsewDKIRI----EDALSVLTEREKEVYLMHRGYGLSYSEIADYLNIKKSTVQSMIERA 154
|
.
gi 896182377 193 R 193
Cdd:PRK06930 155 E 155
|
|
| PRK12531 |
PRK12531 |
RNA polymerase sigma factor; Provisional |
58-201 |
3.63e-06 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 105726 [Multi-domain] Cd Length: 194 Bit Score: 45.69 E-value: 3.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 58 LAYRLTGNQQDAEDLTQETFMRVFR--SLKSYRPGTFEGWLHRITTNLFLDMVRHRQ-----VIRMEALPENYdrVPGTL 130
Cdd:PRK12531 43 FAMKHVGNEQVAMEMVQETMSTVWQkaHLFDGQKSALSTWIYTIIRNLCFDLLRKQKgkdlhIHADDIWPSDY--YPPDL 120
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 896182377 131 ---KTPEQAVDDAMLDPDLEIaLAELQPDYRAVVVLCDvvgLTYEEIASTLGLKMGTVRSRIHRARSSLRATLE 201
Cdd:PRK12531 121 vdhYSPEQDMLKEQVMKFLDR-LPKAQRDVLQAVYLEE---LPHQQVAEMFDIPLGTVKSRLRLAVEKLRHSMD 190
|
|
| PRK06704 |
PRK06704 |
RNA polymerase subunit sigma-70; |
62-201 |
7.69e-06 |
|
RNA polymerase subunit sigma-70;
Pssm-ID: 180663 [Multi-domain] Cd Length: 228 Bit Score: 45.40 E-value: 7.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 62 LTGNQQDAEDLTQETFMRVfrsLKSYRPGTF-EGWLHRITTNLFLDMVRHRQVirMEALPENYdrvpgTLKTPEQAVDDa 140
Cdd:PRK06704 37 LTKNKWDGEDLAQETVCKV---LQKYSNKDIcMTLVYKIARNRWLDQIKSKSV--HEKIRDQI-----TFEEPHEKIAD- 105
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 896182377 141 mLDPDLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLRATLE 201
Cdd:PRK06704 106 -LHEMVGKVLSSLNVQQSAILLLKDVFQYSIADIAKVCSVSEGAVKASLFRSRNRLKTVSE 165
|
|
| PRK12528 |
PRK12528 |
RNA polymerase sigma factor; Provisional |
47-192 |
1.68e-05 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 171561 [Multi-domain] Cd Length: 161 Bit Score: 43.68 E-value: 1.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 47 LVQAHADSVYGLAYRLTGNQQDAEDLTQETFMRVFRSLKSYRPGTFEGWLHRITTNLFLDMVRHRQVIR--MEALPENYD 124
Cdd:PRK12528 9 LYSAHHHWLTGWLRRRLGCPQSAADLAQDTFVKVLVARETAQIIEPRAFLTTIAKRVLCNHYRRQDLERayLEALAQLPE 88
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 125 RVpgtlkTPEQAVDDAMLDPDLEI--ALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRA 192
Cdd:PRK12528 89 RV-----APSEEERAIILETLVELdqLLDGLPPLVKRAFLLAQVDGLGYGEIATELGISLATVKRYLNKA 153
|
|
| PRK09651 |
PRK09651 |
RNA polymerase sigma factor FecI; Provisional |
43-206 |
2.74e-05 |
|
RNA polymerase sigma factor FecI; Provisional
Pssm-ID: 182018 [Multi-domain] Cd Length: 172 Bit Score: 42.87 E-value: 2.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 43 SWSELVQAHADSVYGLAYRLTGNQQDAEDLTQETFMRVFR--SLKSYR-PGTFegwLHRITTNLFLDMVRHRQVIR---- 115
Cdd:PRK09651 11 TFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVseTLSTIRdPRSF---LCTIAKRVMVDLFRRNALEKayle 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 116 -MEALPENYDRVP----GTLKTPEQAvdDAMLDpdleialaELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIh 190
Cdd:PRK09651 88 mLALMPEGGAPSPeereSQLETLQLL--DSMLD--------GLNGKTREAFLLSQLDGLTYSEIAHKLGVSVSSVKKYV- 156
|
170
....*....|....*.
gi 896182377 191 rARSSLRATLERLEKE 206
Cdd:PRK09651 157 -AKATEHCLLFRLEYG 171
|
|
| PRK12529 |
PRK12529 |
RNA polymerase sigma factor; Provisional |
58-192 |
3.40e-05 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183574 [Multi-domain] Cd Length: 178 Bit Score: 43.00 E-value: 3.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 58 LAYRL-TGNQQDAEDLTQETFMRVFRSLKSYRPGTFE---GWLHRITTNLFLDMVRhRQVIRMEALpENYDRVPGTLK-T 132
Cdd:PRK12529 30 LAYRLrSWGRGVADDLAHDIFLRILASRDGGQREAIRqprAYLARIANCVLVSWRR-RQSLELAWL-EALATLPEPLHpS 107
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 133 PEQAVDDAMLDPDLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRA 192
Cdd:PRK12529 108 PEQQSVILETLHEIDALLDTLRPRVKQAFLMATLDGMKQKDIAQALDIALPTVKKYIHQA 167
|
|
| PRK12526 |
PRK12526 |
RNA polymerase sigma factor; Provisional |
64-197 |
1.11e-04 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237127 [Multi-domain] Cd Length: 206 Bit Score: 41.71 E-value: 1.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 64 GNQQDAEDLTQETFMRVFRSLKSYRP--GTFEGWLHRITTNLFLDMVRHRQVIRMEALPENY----DRVPGTLKTPEQaV 137
Cdd:PRK12526 60 GNEAQANELVQETMSNVWRKAHLYNGdkGAATTWVYTVMRNAAFDMLRKIKAKKEQNLGDDIwpieQALAESQSESEE-F 138
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 138 DDAMLDPDLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLR 197
Cdd:PRK12526 139 SDHLMDKQILSYIEKLPEAQQTVVKGVYFQELSQEQLAQQLNVPLGTVKSRLRLALAKLK 198
|
|
| PRK09047 |
PRK09047 |
RNA polymerase factor sigma-70; Validated |
63-201 |
1.79e-04 |
|
RNA polymerase factor sigma-70; Validated
Pssm-ID: 236367 [Multi-domain] Cd Length: 161 Bit Score: 40.34 E-value: 1.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 63 TGNQQDAEDLTQETFMRVfrsLKSYRPGTFEGW---LHRITTNLFLDMVRhRQVIRM-----------------EALPEN 122
Cdd:PRK09047 1 VRDDDAALDIVQDAMIKL---AEKYGDRPAAEWpplFQRILQNRIHDWFR-RQKVRNtwvslfssfsdddddddFDPLET 76
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 896182377 123 YDRVPGTLKTPEQAVDDAMLDPDLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLRATLE 201
Cdd:PRK09047 77 LDSADEGAESPADKLERAQVLQLIEEAIQKLPARQREAFLLRYWEDMDVAETAAAMGCSEGSVKTHCSRATHALAKALE 155
|
|
| PRK12525 |
PRK12525 |
RNA polymerase sigma factor; Provisional |
61-191 |
2.18e-04 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 139037 [Multi-domain] Cd Length: 168 Bit Score: 40.31 E-value: 2.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 61 RLTGNQQDAEDLTQETFMRVFR-----SLKSYRpgtfeGWLHRITTNLFLDMVRHRQVIR--MEALPENYDRVPGTLKTP 133
Cdd:PRK12525 28 RQLGCPHSAEDIASETFLQVLAlpdpaSIREPR-----ALLTTIARRLMYEGWRRQDLERayLQSLAEAPEAVQPSPEEQ 102
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 896182377 134 EQAVDDAMLdpdLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMgtvrSRIHR 191
Cdd:PRK12525 103 WMVIETLLA---IDRLLDGLSGKARAAFLMSQLEGLTYVEIGERLGVSL----SRIHQ 153
|
|
| PRK12530 |
PRK12530 |
RNA polymerase sigma factor; Provisional |
69-202 |
9.07e-04 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237128 [Multi-domain] Cd Length: 189 Bit Score: 38.98 E-value: 9.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896182377 69 AEDLTQETFMRVFRSLKSYR-PGTFEGWLHRITTNLFLDMV--RHRQVIRMEALPEN-----------YDR---VPGTLK 131
Cdd:PRK12530 34 AEDVVQEALVSAYKNADSFKgQSALKTWIFAILKNKIIDLIryRKRFVNESELIEEDspnsffdekghWKPeyyEPSEWQ 113
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 896182377 132 TPEQAVDDAMLDPDLEIALAELQPDYRAVVVLCDVVGLTYEEIASTLGLKMGTVRSRIHRARSSLRATLER 202
Cdd:PRK12530 114 EVENTVYKEEFWLIFEACLNHLPAQQARVFMMREYLELSSEQICQECDISTSNLHVLLYRARLQLQACLSK 184
|
|
| |
