|
Name |
Accession |
Description |
Interval |
E-value |
| PRK07133 |
PRK07133 |
DNA polymerase III subunits gamma and tau; Validated |
3-667 |
0e+00 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235943 [Multi-domain] Cd Length: 725 Bit Score: 755.89 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 3 LTNKYLALYRKYRPKIFDDIKGQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINCLHnQSDILKPCEEC 82
Cdd:PRK07133 1 MRMKYKALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSH-KTDLLEPCQEC 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 83 IKNVDRNLDIIEIDAASNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQ 162
Cdd:PRK07133 80 IENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVH 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 163 KIPETILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHVAIYCANKvIKKEVVEQ 242
Cdd:PRK07133 160 KIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNK-ITLKNVEE 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 243 LFGIVNIDNKIELLNYMSMHDINKTLNLARELFSQGIDINILINDLINILKEWIIFNKTRDQSLVS-TDFKILLQIKIDD 321
Cdd:PRK07133 239 LFGLVSNENLINLLNLLYSKDIKEVLNILNQIKEQGIDPELLLISLINLVKEFIIFNKTKDNSLLEyYSEEDLEKLKIDD 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 322 AKAHYYIETLIDQLHSIAVSDSPEDYFEILLLKLCNYLSPKEEYKNSAVMPKISNEEFNNFNSQEKQVINKNNIYKSLDL 401
Cdd:PRK07133 319 DFAYKFIEILFDLLKDLKISDNPNDTLEILIIKLLALSELEEEDENEIKFKKIEENSIDNLDIKEKKIENENDIEGKSDT 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 402 SSIANGFNANNSTIQNSSDNNSTEDLANNSKKIDDLLEKTAEIYSLDQTSEFEVADISNQIISNNQISIDSNVDNQETAD 481
Cdd:PRK07133 399 KNLEEGFETKDNKNKNSSFINKTENILTNSPLKDELLEKTTEIINIENPQEFEFGQIGNDIISTEIAQLDENQNLIDTGE 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 482 L----------------QISENWKDLVNEDLISKENSENK-----------------HVPLETIIDCLLIKQYLKNNMLN 528
Cdd:PRK07133 479 FdlennfsnsfnpengnKIDENINETFDTSTISANLSENKtnfaqsfnnkdtnlinsEIPIDLIKDTITINNSQKNVKKN 558
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 529 DGRSNFTDIDAIKYGMLSQKITDKNEIN--------------------------ILSDFKIIFSTNDFILLTC---DIDE 579
Cdd:PRK07133 559 GNKDYLSVEEVINLIMLAIKFHSQNQVEykklvqnwnknlplfeydvefmeiahFLKDLKILASSDNFILFSSkrdEIDE 638
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 580 KVYDLNINSHNENIMSALNKVFDRYLYAYAITKGEILEAKKYWKENINEIRAKKVKPLEDLNlKYNKTVQKDVAWAQEIF 659
Cdd:PRK07133 639 LIIKLNKNNYKVNFQNFLEKIFGGPKHIFAISKKLINEAKIYWKAINNTKKSVVIKPLEKPK-KYEKTSVSKENLEKEIF 717
|
....*...
gi 896405248 660 GDKFKLNK 667
Cdd:PRK07133 718 GDKFTKKK 725
|
|
| dnaX_nterm |
TIGR02397 |
DNA polymerase III, subunit gamma and tau; This model represents the well-conserved first ~ ... |
7-356 |
1.53e-147 |
|
DNA polymerase III, subunit gamma and tau; This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274111 [Multi-domain] Cd Length: 355 Bit Score: 432.38 E-value: 1.53e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 7 YLALYRKYRPKIFDDIKGQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINCLHNQSDilKPCEEC---- 82
Cdd:TIGR02397 1 YQVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDG--EPCNECesck 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 83 -IKNvDRNLDIIEIDAASNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDP 161
Cdd:TIGR02397 79 eINS-GSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEP 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 162 QKIPETILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHVAIYCaNKVIKKEVVE 241
Cdd:TIGR02397 158 HKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFG-NGKITYEDVN 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 242 QLFGIVNIDNKIELLNYMSMHDINKTLNLARELFSQGIDINILINDLINILKEWIIFNKT----RDQSLVSTDFKILLQI 317
Cdd:TIGR02397 237 ELLGLVDDEKLIELLEAILNKDTAEALKILDEILESGVDPEKFLEDLIEILRDLLLIKKTpsnlLAVLESEQEFLKELAL 316
|
330 340 350
....*....|....*....|....*....|....*....
gi 896405248 318 KIDDAKAHYYIETLIDQLHSIAVSDSPEDYFEILLLKLC 356
Cdd:TIGR02397 317 KLSLEFLLRLLDILLEALKDLRFSNDPRIWLEMTLLRLL 355
|
|
| PRK05563 |
PRK05563 |
DNA polymerase III subunits gamma and tau; Validated |
7-463 |
9.68e-143 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235505 [Multi-domain] Cd Length: 559 Bit Score: 427.36 E-value: 9.68e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 7 YLALYRKYRPKIFDDIKGQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINCLHNQSDilKPCEEC---- 82
Cdd:PRK05563 3 YQALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG--EPCNECeick 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 83 -IKNvDRNLDIIEIDAASNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDP 161
Cdd:PRK05563 81 aITN-GSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 162 QKIPETILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHVAIYCANKViKKEVVE 241
Cdd:PRK05563 160 HKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDGKV-TYEDAL 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 242 QLFGIVNIDNKIELLNYMSMHDINKTLNLARELFSQGIDINILINDLINILKEwIIFNKTRDQ-------SLVSTDFKIL 314
Cdd:PRK05563 239 EVTGSVSQEALDDLVDAIVEGDVAKALKILEELLDEGKDPNRFIEDLIYYLRD-LLLVKTSPEleildesTENDELFKEL 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 315 LQiKIDDAKAHYYIETLIDQLHSIAVSDSPEDYFEILLLKLCNYLSPKEEYKNS--AVMPKISN--EEFNNFNSQEKQVI 390
Cdd:PRK05563 318 SE-KLDIERLYRMIDILNDAQQQIKWTNQPRIYLEVALVKLCEQAAASPEYDTEleVLLQRVEQleQELKQLKAQPVGVA 396
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 896405248 391 NKNNIYKSLDLSSIANGFNANNSTIQNSSDNNSTEDLANNSKKIDDLLE----KTAEIYSLDQTSEfEVADISNQII 463
Cdd:PRK05563 397 PEQKEKKKEKKKNKKKKYKVPRGKIYKVLKEATRQDLELLKNVWGEILEslkaQRKSLRALLVNSE-PVAASEDTVV 472
|
|
| DnaX |
COG2812 |
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair]; |
16-356 |
7.57e-125 |
|
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
Pssm-ID: 442061 [Multi-domain] Cd Length: 340 Bit Score: 373.37 E-value: 7.57e-125
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 16 PKIFDDIKGQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINCLHNQSDilKPCEEC-----IKNvDRNL 90
Cdd:COG2812 6 PQTFDDVVGQEHVVRTLKNALASGRLAHAYLFTGPRGVGKTTLARILAKALNCENGPTG--EPCGECescraIAA-GSHP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 91 DIIEIDA-ASNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQKIPETIL 169
Cdd:COG2812 83 DVIEIDAeASNIGVDDIRELIEKVSYAPVEGRYKVYIIDEAHMLTTEAFNALLKTLEEPPPHVVFILATTEPQKLLPTIL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 170 SRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHvaiycankvikkevvEQLFGIVNI 249
Cdd:COG2812 163 SRCQRFDFRRLPPEEIAEHLAKIAEREGIEIEPEALALIARAADGSMRDALSLLDQ---------------AIAFGLLDR 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 250 DNK-IELLNYMSMHDINKTLNLARELFSQGIDINILINDLINILKEWIIFNKTRDQ-SLVSTDFKILLQ---IKIDDAKA 324
Cdd:COG2812 228 RELlLDLLEALLAGDVAALLALAEELAKRGRDLKRFLDDLLSLLRDLLLLKLGPDAeLLVNEDERERLQelaRRLSPERL 307
|
330 340 350
....*....|....*....|....*....|..
gi 896405248 325 HYYIETLIDQLHSIAVSDSPEDYFEILLLKLC 356
Cdd:COG2812 308 LRAIQILLEARRELERNVNPRLALEMLLLRLA 339
|
|
| PRK14948 |
PRK14948 |
DNA polymerase III subunit gamma/tau; |
5-505 |
8.36e-102 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 323.45 E-value: 8.36e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 5 NKYLALYRKYRPKIFDDIKGQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINCLHNQSDILKPCEECik 84
Cdd:PRK14948 1 MAYEPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKC-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 85 NVDRN------LDIIEIDAASNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILAT 158
Cdd:PRK14948 79 ELCRAiaagnaLDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLAT 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 159 TDPQKIPETILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHVAIYcaNKVIKKE 238
Cdd:PRK14948 159 TDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSLL--PGPITPE 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 239 VVEQLFGIVNIDNKIELLNYMSMHDINKTLNLARELFSQGIDINILINDLINILKEWIIF---NKTRDQSLVSTDF-KIL 314
Cdd:PRK14948 237 AVWDLLGAVPEQDLLNLLKALASNDPESLLDSCRQLLDRGREPLAILQGLAAFYRDLLLAktaPNRPDLVAVSQQTwDEL 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 315 LQIkiddakAHYY-IETLIdQLHS--------IAVSDSPEDYFEILLLKLCnylspkeeykNSAVMPKISNEEFNNFNSQ 385
Cdd:PRK14948 317 CKL------AKQInLERIL-QWQQhlkgseyqLKNSTQPRLWLEVTLLGLL----------PSAFISEIANASAPANPTP 379
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 386 EKQVINKNNIyksldlSSIANGFNANNSTIQNSSDNNSTEDLANNSKKIDDLLEKTAEiySLDQTSEFEVADISNQIISN 465
Cdd:PRK14948 380 APNPSPPPAP------IQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPAN--AANAPPSLNLEELWQQILAK 451
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 896405248 466 NQ--------------ISIDSNVdnqetADLQISENWKDLVNEDLISKENSENK 505
Cdd:PRK14948 452 LElpstrmllsqqaelVSLDSNR-----AVIAVSPNWLGMVQSRKPLLEQAFAK 500
|
|
| PRK14953 |
PRK14953 |
DNA polymerase III subunits gamma and tau; Provisional |
7-355 |
6.05e-97 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237867 [Multi-domain] Cd Length: 486 Bit Score: 306.75 E-value: 6.05e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 7 YLALYRKYRPKIFDDIKGQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINCLHNQSDilKPCEEC--IK 84
Cdd:PRK14953 3 YIPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEG--EPCGKCenCV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 85 NVDRNL--DIIEIDAASNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQ 162
Cdd:PRK14953 81 EIDKGSfpDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 163 KIPETILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHVAIYCANKViKKEVVEQ 242
Cdd:PRK14953 161 KIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGKV-TIKVVEE 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 243 LFGIVNIDNKIELLNYMSMHDINKTLNLARELFSQGIDINIL---INDLI-NILKEWIIfnKTRDQSLVSTDFKILLQIK 318
Cdd:PRK14953 240 FLGIVSQESVRKFLNLLLESDVDEAIKFLRTLEEKGYNLNKFwkqLEEEIrNILLNKSL--KNPEEVFQVEDFYRKLEKP 317
|
330 340 350
....*....|....*....|....*....|....*..
gi 896405248 319 IddaKAHYYIETLIDQLHSIAVSDSPEDYFEILLLKL 355
Cdd:PRK14953 318 L---EALLYLEDVINKAFSEARTRDPLRAYELAILKL 351
|
|
| PRK14965 |
PRK14965 |
DNA polymerase III subunits gamma and tau; Provisional |
7-248 |
6.61e-97 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 309.36 E-value: 6.61e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 7 YLALYRKYRPKIFDDIKGQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINCLHNQSdiLKPCEECIKNV 86
Cdd:PRK14965 3 YLVLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLT--AEPCNVCPPCV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 87 D----RNLDIIEIDAASNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQ 162
Cdd:PRK14965 81 EitegRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 163 KIPETILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHVAIYCANKVIKKEVVEq 242
Cdd:PRK14965 161 KVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDVAE- 239
|
....*.
gi 896405248 243 LFGIVN 248
Cdd:PRK14965 240 LLGVVD 245
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
9-316 |
7.96e-96 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 306.74 E-value: 7.96e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 9 ALYRKYRPKIFDDIKGQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINCLHNQSDiLKPCEEC-----I 83
Cdd:PRK14950 5 VLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK-GRPCGTCemcraI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 84 KNvDRNLDIIEIDAASNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQK 163
Cdd:PRK14950 84 AE-GSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHK 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 164 IPETILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHVAIYCANKvIKKEVVEQL 243
Cdd:PRK14950 163 VPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGGE-ISLSQVQSL 241
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 896405248 244 FGIVNIDNKIELLNYMSMHDINKTLNLARELFSQGIDINILINDLINILKEWIIFNKTRDQSL--VSTDFKILLQ 316
Cdd:PRK14950 242 LGISGDEEVKALAEALLAKDLKAALRTLNAVAADGADLRQFTRDLVEYLRQVMLLNSGADRSLldLTADEKAALQ 316
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
6-288 |
7.92e-91 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 294.76 E-value: 7.92e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 6 KYLALYRKYRPKIFDDIKGQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINCLHNQSD--ILKPCEECI 83
Cdd:PRK14971 3 NYIVSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADgeACNECESCV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 84 K-NVDRNLDIIEIDAASNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQ 162
Cdd:PRK14971 83 AfNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKH 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 163 KIPETILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHVAIYCANKVIKKEVVEQ 242
Cdd:PRK14971 163 KILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGNITYKSVIEN 242
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 896405248 243 LfGIVNIDNKIELLNYMSMHDINKTLNLARELFSQGIDINILINDL 288
Cdd:PRK14971 243 L-NILDYDYYFRLTDALLAGKVSDSLLLFDEILNKGFDGSHFITGL 287
|
|
| PRK14969 |
PRK14969 |
DNA polymerase III subunits gamma and tau; Provisional |
7-292 |
7.72e-90 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237873 [Multi-domain] Cd Length: 527 Bit Score: 289.34 E-value: 7.72e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 7 YLALYRKYRPKIFDDIKGQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINClhNQSDILKPCEECIKNV 86
Cdd:PRK14969 3 YQVLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC--ETGVTATPCGVCSACL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 87 D----RNLDIIEIDAASNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQ 162
Cdd:PRK14969 81 EidsgRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 163 KIPETILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHVAIYCANKVIKKEVVEQ 242
Cdd:PRK14969 161 KIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGGGTVNESEVRAM 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 896405248 243 LfGIVNIDNKIELLNYMSMHDINKTLNLARELFSQGIDINILINDLINIL 292
Cdd:PRK14969 241 L-GAIDQDYLFALLEALLAQDGAALLAIADAMEERSLSFDAALQDLAALL 289
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
7-292 |
1.83e-89 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 291.77 E-value: 1.83e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 7 YLALYRKYRPKIFDDIKGQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINCLHNQSDilKPCEEC--IK 84
Cdd:PRK07994 3 YQVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA--TPCGECdnCR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 85 NVD--RNLDIIEIDAASNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQ 162
Cdd:PRK07994 81 EIEqgRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 163 KIPETILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHvAIYCANKVIKKEVVEQ 242
Cdd:PRK07994 161 KLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQ-AIASGNGQVTTDDVSA 239
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 896405248 243 LFGIVNIDNKIELLNYMSMHDINKTLNLARELFSQGIDINILINDLINIL 292
Cdd:PRK07994 240 MLGTLDDDQALSLLEALVEGDGERVMALINQLAERGPDWEGLLVELLELL 289
|
|
| PRK08451 |
PRK08451 |
DNA polymerase III subunits gamma and tau; Validated |
9-318 |
1.06e-87 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236267 [Multi-domain] Cd Length: 535 Bit Score: 284.23 E-value: 1.06e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 9 ALYRKYRPKIFDDIKGQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINCLHNQSDilKPCEECIK---- 84
Cdd:PRK08451 3 ALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSS--TPCDTCIQcqsa 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 85 NVDRNLDIIEIDAASNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQKI 164
Cdd:PRK08451 81 LENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 165 PETILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHVAIYCANKVIKKEVVEQLf 244
Cdd:PRK08451 161 PATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCKNAITESKVADML- 239
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 896405248 245 GIVNiDNKIE-LLNYMSMHDINKTLNLARELfsQGIDINILINDLINILKEwIIFNKTRDQSLVSTD--FKILLQIK 318
Cdd:PRK08451 240 GLLD-PSKLEdFFQAILNQDKEKLFELLKEL--EDYEAEMVLDEMMLFLKE-KFLSKDSEFSILLYErfFRILSSAK 312
|
|
| PRK06647 |
PRK06647 |
DNA polymerase III subunits gamma and tau; Validated |
13-517 |
1.57e-87 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235845 [Multi-domain] Cd Length: 563 Bit Score: 284.36 E-value: 1.57e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 13 KYRPKIFDDIKGQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINClhNQSDILKPCEEC-----IKNvD 87
Cdd:PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNC--VNGPTPMPCGECsscksIDN-D 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 88 RNLDIIEIDAASNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQKIPET 167
Cdd:PRK06647 86 NSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPAT 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 168 ILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHVAIYCaNKVIKKEVVEQLFGIV 247
Cdd:PRK06647 166 IKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFS-DSDITLEQIRSKMGLT 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 248 NIDNKIELLNYMSMHDINKTLNLARELFSQGIDINILINDLINILKEwIIFNK--TRDQSLVSTDFKILLQiKIDDAKAH 325
Cdd:PRK06647 245 GDEFLEKLASSILNEDAKELLCVLDSVFLSGVSVEQFLLDCIEFFRE-LLFLKhgIKNEAFIGIKAERLPE-KLREFDLS 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 326 YY---IETLIDQLHSIAVSDSPEDYFEIL---LLKLCNYLSPKEeyknsaVMPKISNEEfnnfnsqekqvinknniyksl 399
Cdd:PRK06647 323 QIeraISVLLETYRDLQFSVNPRYELEINfskILRLKDYVPNHE------LIKQIQDLE--------------------- 375
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 400 dlSSIANGFNANNSTIQNSSDNNSTEDLANNSKKIdDLLEKTAEIYSLDqtsefevadisnqiiSNNQISIDSNVDNQET 479
Cdd:PRK06647 376 --SKLLEHAAPDSCNFDVGSDNESTDDLSPIPIDP-PLKAELPEIRSLE---------------PDESTKEDEPLKTKID 437
|
490 500 510
....*....|....*....|....*....|....*...
gi 896405248 480 ADLQISENWKDLVNEDLISKENSENKHVPLETIIDCLL 517
Cdd:PRK06647 438 SDMLSTESWDDEIDEIFIEVRDNFDRSNDNEEIKESFI 475
|
|
| PRK14962 |
PRK14962 |
DNA polymerase III subunits gamma and tau; Provisional |
9-323 |
4.12e-85 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237869 [Multi-domain] Cd Length: 472 Bit Score: 275.49 E-value: 4.12e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 9 ALYRKYRPKIFDDIKGQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINCLHNQSdiLKPCEEC--IKNV 86
Cdd:PRK14962 3 ALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKG--VEPCNECraCRSI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 87 DRN--LDIIEIDAASNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQKI 164
Cdd:PRK14962 81 DEGtfMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 165 PETILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHVAIYcANKVIKKEVVEQLF 244
Cdd:PRK14962 161 PPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKF-SEGKITLETVHEAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 245 GIVNIDNKIELLNYMSMHDINKTLNLARELFSQGIDINILINDLINILKEWIIFNKTRDQSLVSTDF-KILLQIKIDDAK 323
Cdd:PRK14962 240 GLIPIEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLERERANDIIQVSRQLlNILREIKFAEEK 319
|
|
| PRK06305 |
PRK06305 |
DNA polymerase III subunits gamma and tau; Validated |
7-289 |
3.01e-83 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180523 [Multi-domain] Cd Length: 451 Bit Score: 269.72 E-value: 3.01e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 7 YLALYRKYRPKIFDDIKGQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINCLHNQSDiLKPCEECI--K 84
Cdd:PRK06305 4 YQVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTED-QEPCNQCAscK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 85 NVD--RNLDIIEIDAASNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQ 162
Cdd:PRK06305 83 EISsgTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIH 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 163 KIPETILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHVaIYCANKVIKKEVVEQ 242
Cdd:PRK06305 163 KIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYV-VGLFPKSLDPDSVAK 241
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 896405248 243 LFGIVNIDNKIELLNYMSMHDINKTLNLARELFSQGIDINILINDLI 289
Cdd:PRK06305 242 ALGLLSQDSLYTLDEAITTQNYAQALEPVTDAMNSGVAPAHFLHDLT 288
|
|
| PRK05896 |
PRK05896 |
DNA polymerase III subunits gamma and tau; Validated |
5-443 |
1.13e-82 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235638 [Multi-domain] Cd Length: 605 Bit Score: 272.87 E-value: 1.13e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 5 NKYLALYRKYRPKIFDDIKGQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINCLH-NQSDILKPCEEC- 82
Cdd:PRK05896 1 MSEITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNpKDGDCCNSCSVCe 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 83 IKNVDRNLDIIEIDAASNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQ 162
Cdd:PRK05896 81 SINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 163 KIPETILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHVAIYcANKVIKKEVVEQ 242
Cdd:PRK05896 161 KIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTF-KNSEIDIEDINK 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 243 LFGIVNIDNKIELLNYMSMHDINKTLNLARELFSQGIDINILINDLINILKEWIIFNKTRDQSLVS------TDFKILLQ 316
Cdd:PRK05896 240 TFGLVDNNKKINLIELIQKNDIEELRNLINELESKGINFEAFCRDLINLLIDLLVYQKTKNINLLKklskeqLKTLNLEK 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 317 IKID--DAKAHYYIETLIDQLHSIAVSDSPEDYFEILLLKLCNY-----------LSPKEEYKNSAVMPKISNEEFNNFN 383
Cdd:PRK05896 320 QKLLsiEFNTNFLLNNFVSLINRLKASVNQVFEFEIYLYKIINAnpdklenkkieISIKPEKKTINNSQIITTKKINIVE 399
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 896405248 384 SQEKQVINKNNIYKSLDLSSIANGFNANNSTIQNSSDNNSTE-----DLANNSKKIDDLLEKTAE 443
Cdd:PRK05896 400 ESNKNSVHFDTLYKTKIFYHKKKINQNNKEQDIKKEELLEKEfvkksEKIPKNDELLDNLELAKQ 464
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
7-350 |
5.49e-81 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 271.20 E-value: 5.49e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 7 YLALYRKYRPKIFDDIKGQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINCLHNQSDilKPCEEC--IK 84
Cdd:PRK08691 3 YQVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHG--EPCGVCqsCT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 85 NVD--RNLDIIEIDAASNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQ 162
Cdd:PRK08691 81 QIDagRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 163 KIPETILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHVAIYCANKViKKEVVEQ 242
Cdd:PRK08691 161 KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKV-AENDVRQ 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 243 LFGIVNIDNKIELLNYMSMHDINKTLNLARELFSQGIDINILINDLINILkewiifnktrdQSLVstdfkiLLQiKIDDA 322
Cdd:PRK08691 240 MIGAVDKQYLYELLTGIINQDGAALLAKAQEMAACAVGFDNALGELAILL-----------QQLA------LIQ-AVPSA 301
|
330 340 350
....*....|....*....|....*....|.
gi 896405248 323 KAHYYIETliDQLHSIAVSDSPED---YFEI 350
Cdd:PRK08691 302 LAHDDPDS--DILHRLAQTISGEQiqlYYQI 330
|
|
| PRK14964 |
PRK14964 |
DNA polymerase III subunits gamma and tau; Provisional |
8-429 |
2.99e-78 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237870 [Multi-domain] Cd Length: 491 Bit Score: 257.79 E-value: 2.99e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 8 LALyrKYRPKIFDDIKGQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINC-LHNQSDILKPCEEC--IK 84
Cdd:PRK14964 3 LAL--KYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCsNGPTSDPCGTCHNCisIK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 85 NVDrNLDIIEIDAASNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQKI 164
Cdd:PRK14964 81 NSN-HPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 165 PETILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHVAIYcANKVIKKEVVEQLF 244
Cdd:PRK14964 160 PVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIY-SNNKISEKSVRDLL 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 245 GIVNIDNKIELLNYMSMHDINKTLNLARELFSQGIDINILiNDLINILKEWIIFNKTRDQSLVSTDfKILLQIKIDDAKA 324
Cdd:PRK14964 239 GCVDKHILEDLVEAILLGDAQSALNVFRELCNTSNPVIIL-EGMLQIIYEICYFSITKEIDFLLGE-DLITRIKSLKIGS 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 325 HYYI----ETLIDQLHSIAVSDSPEDYFEILLLKLCnYL----SPKE-------EYKNSAVMPKISNEEFNNFNS----Q 385
Cdd:PRK14964 317 TIFLsrlwQMLLKGIQEVKSSTCVKQAAEMMIIRLC-YLsdlpSPQQiikkilsKSVEQAPRQIKVNNKQQNYDFdkllQ 395
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 896405248 386 EKQVINKNNIYKSL--DLSSIANGFNANNSTIQNSS-DNNSTEDLAN 429
Cdd:PRK14964 396 LLKSNNMIDLYNQLcsSLQEIDCKSDYTLNIKANSQlDSNFCNDLKN 442
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
7-307 |
8.81e-78 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 260.26 E-value: 8.81e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 7 YLALYRKYRPKIFDDIKGQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINCLHNQSD------ILKPCE 80
Cdd:PRK14954 3 YQVIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDpvylqeVTEPCG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 81 ECIKNVD----RNLDIIEIDAASNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFIL 156
Cdd:PRK14954 83 ECESCRDfdagTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIF 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 157 ATTDPQKIPETILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHVAIYC----AN 232
Cdd:PRK14954 163 ATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAFSvgseAE 242
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 896405248 233 KVIKKEVVEQLFGIVNIDNKIELLNYMSMHDINKTLNLARELFSQGIDINILINDLINILKEWIIFNKTRDQSLV 307
Cdd:PRK14954 243 KVIAYQGVAELLNYIDDEQFFDVTDAIAENDAVKMLEVARFVIDNGYDEQDFLEKLIEHFRNFLVLYNLRSTRLI 317
|
|
| PRK14963 |
PRK14963 |
DNA polymerase III subunits gamma and tau; Provisional |
9-294 |
9.43e-78 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184927 [Multi-domain] Cd Length: 504 Bit Score: 257.08 E-value: 9.43e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 9 ALYRKYRPKIFDDIKGQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINClhnQSDILKPCEEC-----I 83
Cdd:PRK14963 3 ALYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNC---SGEDPKPCGECesclaV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 84 KNvDRNLDIIEIDAASNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQK 163
Cdd:PRK14963 80 RR-GAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEK 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 164 IPETILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHvaIYCANKVIKKEVVEQL 243
Cdd:PRK14963 159 MPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLER--LLALGTPVTRKQVEEA 236
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 896405248 244 FGIVNIDNKIELLNYMSMHDINKTLNLARELFSQGIDINILINDLINILKE 294
Cdd:PRK14963 237 LGLPPQERLRGIAAALAQGDAAEALSGAAQLYRDGFAARTLVEGLLEAFRA 287
|
|
| PRK09111 |
PRK09111 |
DNA polymerase III subunits gamma and tau; Validated |
7-288 |
1.27e-77 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236382 [Multi-domain] Cd Length: 598 Bit Score: 259.06 E-value: 1.27e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 7 YLALYRKYRPKIFDDIKGQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINCL----HNQ--SDILKPCE 80
Cdd:PRK09111 11 YRVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEgpdgDGGptIDLCGVGE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 81 EC--IKNvDRNLDIIEIDAASNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILAT 158
Cdd:PRK09111 91 HCqaIME-GRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFAT 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 159 TDPQKIPETILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHvAIYCANKVIKKE 238
Cdd:PRK09111 170 TEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQ-AIAHGAGEVTAE 248
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 896405248 239 VVEQLFGIVNIDNKIELLNYMSMHDINKTLNLARELFSQGIDINILINDL 288
Cdd:PRK09111 249 AVRDMLGLADRARVIDLFEALMRGDVAAALAEFRAQYDAGADPVVVLTDL 298
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
7-292 |
5.14e-77 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 258.11 E-value: 5.14e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 7 YLALYRKYRPKIFDDIKGQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINC--LHNQSDIL-KPCEECI 83
Cdd:PRK14951 3 YLVLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCqgPDGQGGITaTPCGVCQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 84 KNVD----RNLDIIEIDAASNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATT 159
Cdd:PRK14951 83 ACRDidsgRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATT 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 160 DPQKIPETILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHvAIYCANKVIKKEV 239
Cdd:PRK14951 163 DPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQ-AIAFGSGQLQEAA 241
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 896405248 240 VEQLFGIVNIDNKIELLNYMSMHDINKTLNLARELFSQGIDINILINDLINIL 292
Cdd:PRK14951 242 VRQMLGSVDRSHVFRLIDALAQGDGRTVVETADELRLNGLSAASTLEEMAAVL 294
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
7-292 |
6.54e-77 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 259.81 E-value: 6.54e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 7 YLALYRKYRPKIFDDIKGQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINCL--HNQSDIL-KPCEEC- 82
Cdd:PRK12323 3 YQVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTgaDGEGGITaQPCGQCr 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 83 -IKNVD--RNLDIIEIDAASNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATT 159
Cdd:PRK12323 83 aCTEIDagRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATT 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 160 DPQKIPETILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHVAIYCANKVIkKEV 239
Cdd:PRK12323 163 DPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAYSAGNVS-EEA 241
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 896405248 240 VEQLFGIVNIDNKIELLNYMSMHDINKTLNLARELFSQGIDINILINDLINIL 292
Cdd:PRK12323 242 VRGMLGAIDQSYLVRLLDALAAEDGAALLAIADEMAGRSLSFAGALQDLASLL 294
|
|
| PRK14970 |
PRK14970 |
DNA polymerase III subunits gamma and tau; Provisional |
12-297 |
1.03e-76 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184934 [Multi-domain] Cd Length: 367 Bit Score: 249.79 E-value: 1.03e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 12 RKYRPKIFDDIKGQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINCLHNQSDilkpceecikNVDRNLD 91
Cdd:PRK14970 9 RKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDP----------NEDFSFN 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 92 IIEIDAASNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQKIPETILSR 171
Cdd:PRK14970 79 IFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 172 VQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHVAIYCANKVIKKEVVEQLfGIVNIDN 251
Cdd:PRK14970 159 CQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVTENL-NILDYDT 237
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 896405248 252 KIELLNYMSMHDINKTLNLARELFSQGIDINILINDLINILKEWII 297
Cdd:PRK14970 238 YINVTDLILENKIPELLLAFNEILRKGFDGHHFIAGLASHFRDLMV 283
|
|
| PRK14960 |
PRK14960 |
DNA polymerase III subunit gamma/tau; |
7-389 |
6.18e-76 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237868 [Multi-domain] Cd Length: 702 Bit Score: 257.28 E-value: 6.18e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 7 YLALYRKYRPKIFDDIKGQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINCLHNQSDilKPCEECIK-- 84
Cdd:PRK14960 2 YQVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTS--TPCEVCATck 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 85 --NVDRNLDIIEIDAASNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQ 162
Cdd:PRK14960 80 avNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQ 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 163 KIPETILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHVAIYCANKVIKKEVVEQ 242
Cdd:PRK14960 160 KLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEM 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 243 LfGIvnIDNKI--ELLNYMSMHDINKTLNLARELFSQGIDINILINDLINILKEWIIFNKTRDQSLVSTD---FKILLQI 317
Cdd:PRK14960 240 L-GL--IDRTIiyDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQLISTLHELALLQYLPELGLKYSEeinAKILQLS 316
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 896405248 318 KIDDAK-AHYYIETLIDQLHSIAVSDSPEDYFEILLLKLCNY--LSPKEEYKNSAVMPkiSNEEFNNFNSQEKQV 389
Cdd:PRK14960 317 KLISAQdLQLYYQIACKGRSDLQLAVTQEQGFEMCVLRLLAFrpLAPNEILVSEPVQQ--NGQAEVGLNSQAQTA 389
|
|
| PRK14955 |
PRK14955 |
DNA polymerase III subunits gamma and tau; Provisional |
7-307 |
1.04e-75 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184919 [Multi-domain] Cd Length: 397 Bit Score: 248.27 E-value: 1.04e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 7 YLALYRKYRPKIFDDIKGQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINCLHNQSD------ILKPCE 80
Cdd:PRK14955 3 YQVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDadylqeVTEPCG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 81 ECIKNVD----RNLDIIEIDAASNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFIL 156
Cdd:PRK14955 83 ECESCRDfdagTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIF 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 157 ATTDPQKIPETILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHVAIYCAN---- 232
Cdd:PRK14955 163 ATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAFSVEsege 242
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 896405248 233 KVIKKEVVEQLFGIVNIDNKIELLNYMSMHDINKTLNLARELFSQGIDINILINDLINILKEWIIFNKTRDQSLV 307
Cdd:PRK14955 243 GSIRYDKVAELLNYIDDEHFFAVTDAVADGDAVAMLDVAQFVIRNGYDEQDFLEKLIEHLRNFLVVHNLRSTRLV 317
|
|
| PRK14949 |
PRK14949 |
DNA polymerase III subunits gamma and tau; Provisional |
7-264 |
2.65e-71 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 248.87 E-value: 2.65e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 7 YLALYRKYRPKIFDDIKGQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINClhNQSDILKPCEECIKNV 86
Cdd:PRK14949 3 YQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC--EQGVTATPCGVCSSCV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 87 D----RNLDIIEIDAASNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQ 162
Cdd:PRK14949 81 EiaqgRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 163 KIPETILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHvAIYCANKVIKKEVVEQ 242
Cdd:PRK14949 161 KLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQ-AIAFGGGQVMLTQVQT 239
|
250 260
....*....|....*....|....
gi 896405248 243 LFGivNIDNK--IELLNYMSMHDI 264
Cdd:PRK14949 240 MLG--SIDEQhvIALLKALTDADI 261
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
8-224 |
3.13e-71 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 246.82 E-value: 3.13e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 8 LALYRKYRPKIFDDIKGQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINCLHNQSDIlkPCEECIKNVD 87
Cdd:PRK07764 3 LALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTST--PCGECDSCVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 88 ------RNLDIIEIDAASNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDP 161
Cdd:PRK07764 81 lapggpGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEP 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 896405248 162 QKIPETILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIAD 224
Cdd:PRK07764 161 DKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLD 223
|
|
| PRK14952 |
PRK14952 |
DNA polymerase III subunits gamma/tau; |
8-224 |
6.44e-70 |
|
DNA polymerase III subunits gamma/tau;
Pssm-ID: 237866 [Multi-domain] Cd Length: 584 Bit Score: 238.24 E-value: 6.44e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 8 LALYRKYRPKIFDDIKGQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINCLhnQSDILKPC---EECI- 83
Cdd:PRK14952 1 MALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA--QGPTATPCgvcESCVa 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 84 --KNVDRNLDIIEIDAASNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDP 161
Cdd:PRK14952 79 laPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEP 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 896405248 162 QKIPETILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIAD 224
Cdd:PRK14952 159 EKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLD 221
|
|
| PRK06645 |
PRK06645 |
DNA polymerase III subunits gamma and tau; Validated |
4-292 |
1.00e-69 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180643 [Multi-domain] Cd Length: 507 Bit Score: 235.52 E-value: 1.00e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 4 TNKYLALYRKYRPKIFDDIKGQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINCLH--NQSDILKPCEE 81
Cdd:PRK06645 5 SNQYIPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSAliTENTTIKTCEQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 82 CIKNVDRN----LDIIEIDAASNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILA 157
Cdd:PRK06645 85 CTNCISFNnhnhPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 158 TTDPQKIPETILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHVAIYCAN--KVI 235
Cdd:PRK06645 165 TTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMSAKsdNII 244
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 896405248 236 KKEVVEQLFGIVNIDNKIELLNYMSMHDINKTLNLARELFSQGIDINILINDLINIL 292
Cdd:PRK06645 245 SPQVINQMLGLVDSSVIIEFVEYIIHRETEKAINLINKLYGSSVNLEIFIESVSDFI 301
|
|
| PRK14956 |
PRK14956 |
DNA polymerase III subunits gamma and tau; Provisional |
3-292 |
2.03e-69 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184920 [Multi-domain] Cd Length: 484 Bit Score: 234.07 E-value: 2.03e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 3 LTNKYLALYRKYRPKIFDDIKGQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINClhNQSDILKPCEEC 82
Cdd:PRK14956 1 MSGTHEVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC--ENPIGNEPCNEC 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 83 IKNVD----RNLDIIEIDAASNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILAT 158
Cdd:PRK14956 79 TSCLEitkgISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILAT 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 159 TDPQKIPETILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHVAIYCANKVIKKE 238
Cdd:PRK14956 159 TEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDSKLTGVK 238
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 896405248 239 vVEQLFGIVNIDNKIELLNYMSMHDIN-KTLNLARELFSQGIDINILINDLINIL 292
Cdd:PRK14956 239 -IRKMIGYHGIEFLTSFIKSLIDPDNHsKSLEILESLYQEGQDIYKFLWDSIEFT 292
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
7-292 |
1.07e-68 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 240.14 E-value: 1.07e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 7 YLALYRKYRPKIFDDIKGQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINCLHNQSDilKPCEEC--IK 84
Cdd:PRK07003 3 YQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS--QPCGVCraCR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 85 NVD--RNLDIIEIDAASNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQ 162
Cdd:PRK07003 81 EIDegRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 163 KIPETILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHVAIYCANKViKKEVVEQ 242
Cdd:PRK07003 161 KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEV-TETAVSG 239
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 896405248 243 LFGIVNIDNKIELLNYMSMHDINKTLNLARELFSQGIDINILINDLINIL 292
Cdd:PRK07003 240 MLGALDQTYMVRLLDALAAGDGPEILAVADEMALRSLSFSTALQDLASLL 289
|
|
| PRK14958 |
PRK14958 |
DNA polymerase III subunits gamma and tau; Provisional |
10-378 |
2.75e-66 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184922 [Multi-domain] Cd Length: 509 Bit Score: 226.54 E-value: 2.75e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 10 LYRKYRPKIFDDIKGQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINCLHNQSdiLKPCEEC--IKNVD 87
Cdd:PRK14958 6 LARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVS--ANPCNDCenCREID 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 88 --RNLDIIEIDAASNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQKIP 165
Cdd:PRK14958 84 egRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLP 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 166 ETILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHVAIYCANKVIKKEvVEQLFG 245
Cdd:PRK14958 164 VTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIAD-VKTMLG 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 246 IVNIDNKIELLNYMSMHDINKTLNLARELFSQGIDINILINDLINILKEWIIFnKTRDQSLVSTDFKILLQIKI----DD 321
Cdd:PRK14958 243 TIEPLLLFDILEALAAKAGDRLLGCVTRLVEQGVDFSNALADLLSLLHQIAII-QTVPEALIENDSEQLRQLAKlldrED 321
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 896405248 322 AKAHYYIeTLIDQlHSIAVSDSPEDYFEILLLKLCNYLS------PKEEYKNSAVMPKISNEE 378
Cdd:PRK14958 322 VQLFYQI-GLIGQ-RDLAYSPTPQTGFEMTLLRMLAFYPsaanaiPETESKEAVVTPTPKSSE 382
|
|
| PRK14961 |
PRK14961 |
DNA polymerase III subunits gamma and tau; Provisional |
7-353 |
3.25e-66 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184925 [Multi-domain] Cd Length: 363 Bit Score: 221.99 E-value: 3.25e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 7 YLALYRKYRPKIFDDIKGQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINCLHNQSDilKPCEECI--K 84
Cdd:PRK14961 3 YQILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS--NPCRKCIicK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 85 NVDRN--LDIIEIDAASNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQ 162
Cdd:PRK14961 81 EIEKGlcLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 163 KIPETILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHvAIYCANKVIKKEVVEQ 242
Cdd:PRK14961 161 KIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEH-AINLGKGNINIKNVTD 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 243 LFGIVNIDNKIELLNYMSMHDINKTLNLARELFSQGIDINILINDLINILkewiifnktrdqslvstdFKILLQIKIDDA 322
Cdd:PRK14961 240 MLGLLNEKQSFLLTDALLKKDSKKTMLLLNKISSIGIEWENILIEMLRFL------------------HHISMSQSFPKI 301
|
330 340 350
....*....|....*....|....*....|....
gi 896405248 323 KAHYYIETLIDQLHSIAVSDSPED---YFEILLL 353
Cdd:PRK14961 302 WNTIFIKNYKNQIQKIAQNNKKTNiqlCYQILLN 335
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
9-355 |
1.23e-65 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 227.64 E-value: 1.23e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 9 ALYRKYRPKIFDDIKGQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINCLHNQS-DILKPCEECIKNVD 87
Cdd:PRK14959 5 SLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTgEPCNTCEQCRKVTQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 88 RN-LDIIEIDAASNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQKIPE 166
Cdd:PRK14959 85 GMhVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPV 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 167 TILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHVAIYCANKvIKKEVVEQLFGI 246
Cdd:PRK14959 165 TIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESR-LTIDGARGVLGL 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 247 VNIDNKIELLNYMSMHDINKTLNLARELFSQGIDINILINDLINILKEWIIFNKTRDQSLVSTDFK-------ILLQIKI 319
Cdd:PRK14959 244 AGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLRQAGEAALASLDLPedearqwLGWAKRF 323
|
330 340 350
....*....|....*....|....*....|....*.
gi 896405248 320 DDAKAHYYIETLIDQLHSIAVSDSPEDYFEILLLKL 355
Cdd:PRK14959 324 EPAHIHACWQMTLEGQRRVLTSLEPAMALELLLLNL 359
|
|
| PRK14957 |
PRK14957 |
DNA polymerase III subunits gamma and tau; Provisional |
7-476 |
6.41e-64 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184921 [Multi-domain] Cd Length: 546 Bit Score: 221.11 E-value: 6.41e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 7 YLALYRKYRPKIFDDIKGQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINCLHN-QSDILKPCEECIK- 84
Cdd:PRK14957 3 YQALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGvTAEPCNKCENCVAi 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 85 NVDRNLDIIEIDAASNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQKI 164
Cdd:PRK14957 83 NNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKI 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 165 PETILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHVAIYCANKvIKKEVVEQLF 244
Cdd:PRK14957 163 PVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGE-LKQAQIKQML 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 245 GIVNIDNKIELLNYMSMHDINKTLNLARELFSQGIDINILINDLINILKEWIIFNKTRDQSLVS-TDFKILLQI--KIDD 321
Cdd:PRK14957 242 GIIDSEEVYSIINAIIDNDPKAILPAIKNLALTESSADAVLDRIAEIWFACCIYSFTQSLDAVNdIDVDIINNIlaKISI 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 322 AKAHYYIETLIDQLHSIAVSDSPEDYFEILLLKLCNY----LSPKEEYKNSAVMPKISNEEF----NNFNSQEKQVINKN 393
Cdd:PRK14957 322 EQAHFLYQLTITAKKDIALAPNFETGVTMAILRLIAFqkknLIDKTQTSKSNISPIVSKNDInllkNTFKSEQPKQTVKA 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 394 NIYKSldlssiaNGFNANNSTIQNSSD------------NNSTEDLANNSKKIDDLLEkTAEIYsLDQTSEfEVADISNQ 461
Cdd:PRK14957 402 VVAQN-------NDSTASENTQEQSLDkkwfnllnriklKGFTKTLAFNSHLISDNSE-TFVIH-LNEDAK-KILELDPQ 471
|
490
....*....|....*
gi 896405248 462 IISNNQISIDSNVDN 476
Cdd:PRK14957 472 SIAKLQASISEYLNN 486
|
|
| HolB |
COG0470 |
DNA polymerase III, delta prime subunit [Replication, recombination and repair]; |
25-315 |
4.55e-49 |
|
DNA polymerase III, delta prime subunit [Replication, recombination and repair];
Pssm-ID: 440238 [Multi-domain] Cd Length: 289 Bit Score: 173.24 E-value: 4.55e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 25 QDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINCLHNQSDilKPCEECIK---NVDRNLDIIEI--DAAS 99
Cdd:COG0470 1 QEEAWEQLLAAAESGRLPHALLLHGPPGIGKTTLALALARDLLCENPEGG--KACGQCHSrlmAAGNHPDLLELnpEEKS 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 100 NT-GIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQKIPETILSRVQRFNFK 178
Cdd:COG0470 79 DQiGIDQIRELGEFLSLTPLEGGRKVVIIDEADAMNEAAANALLKTLEEPPKNTPFILIANDPSRLLPTIRSRCQVIRFR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 179 LMTIETLVSQLKDifnkENIeyEDDAINVIAKLGNGSLRDSLSIADHVAIYcankvikKEVVEQLFGIVNIDNKIELLNY 258
Cdd:COG0470 159 PPSEEEALAWLRE----EGV--DEDALEAILRLAGGDPRAAINLLQALAGR-------KELLEDLAALLSRDRALELLDA 225
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 896405248 259 MSMHDINKTLNLARELFSQGIDINILINDLINILKEWiifNKTRDQSLVSTDFKILL 315
Cdd:COG0470 226 LLKAEALELLDWLLKWLLDNLPLEYAGEDLARAYEAL---SEADRRLGRYANDRLLL 279
|
|
| DNA_pol3_delta2 |
pfam13177 |
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required ... |
24-178 |
4.86e-41 |
|
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA.
Pssm-ID: 433013 [Multi-domain] Cd Length: 161 Bit Score: 146.97 E-value: 4.86e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 24 GQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINCLHNQSDilKPCEEC--IKNVDRNL--DIIEIDAAS 99
Cdd:pfam13177 1 GQPEAIQLLQNSLENGRLSHAYLFSGPEGVGKLELALAFAKALFCEEPGDD--LPCGQCrsCRRIESGNhpDLVIIEPEG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 100 NT-GIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQKIPETILSRVQRFNFK 178
Cdd:pfam13177 79 QSiKIDQIRELQKEFSKSPYEGKKKVYIIEDAEKMTASAANSLLKFLEEPPGNTVIILLTENPSRLLPTIRSRCQIIRFK 158
|
|
| holB |
TIGR00678 |
DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' ... |
30-217 |
3.58e-39 |
|
DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273213 [Multi-domain] Cd Length: 188 Bit Score: 142.77 E-value: 3.58e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 30 TTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINCLHNQSDilKPCEEC--IKNVDRNL--DIIEIDAASNT-GID 104
Cdd:TIGR00678 2 QQLKRALEKGRLAHAYLFTGPEGVGKELLALALAKALLCEQRGGG--EPCGEChsCRLIEAGNhpDLHRLEPEGQSiKVD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 105 DIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQKIPETILSRVQRFNFKLMTIET 184
Cdd:TIGR00678 80 QVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQRLPFPPLSEEA 159
|
170 180 190
....*....|....*....|....*....|...
gi 896405248 185 LVsqlkDIFNKENIEYEDDAInvIAKLGNGSLR 217
Cdd:TIGR00678 160 LL----QWLIRQGISEEAAEL--LLALAGGSPG 186
|
|
| PRK08058 |
PRK08058 |
DNA polymerase III subunit delta'; Validated |
25-191 |
8.91e-27 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181214 [Multi-domain] Cd Length: 329 Bit Score: 111.56 E-value: 8.91e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 25 QDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINCLHNQSDilKPCEECiKNVDR-------NLDIIEIDA 97
Cdd:PRK08058 11 QPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGV--EPCGTC-TNCKRidsgnhpDVHLVAPDG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 98 ASnTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQKIPETILSRVQRFNF 177
Cdd:PRK08058 88 QS-IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEF 166
|
170
....*....|....
gi 896405248 178 KLMTIETLVSQLKD 191
Cdd:PRK08058 167 RPLPPESLIQRLQE 180
|
|
| PRK12402 |
PRK12402 |
replication factor C small subunit 2; Reviewed |
13-264 |
1.88e-25 |
|
replication factor C small subunit 2; Reviewed
Pssm-ID: 237090 [Multi-domain] Cd Length: 337 Bit Score: 107.77 E-value: 1.88e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 13 KYRPKIFDDIKGQDHIVTTLKNIILNNKLSHaYLFCGPHGNGKTSTAKVFANTincLH-----------NQSDILKPCEE 81
Cdd:PRK12402 8 KYRPALLEDILGQDEVVERLSRAVDSPNLPH-LLVQGPPGSGKTAAVRALARE---LYgdpwennftefNVADFFDQGKK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 82 CIKNVDRNLDIIEIDAASNTG-IDDIRE-LKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATT 159
Cdd:PRK12402 84 YLVEDPRFAHFLGTDKRIRSSkIDNFKHvLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATR 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 160 DPQKIPETILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHVAIycANKVIKKEV 239
Cdd:PRK12402 164 QPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAAL--AAGEITMEA 241
|
250 260
....*....|....*....|....*.
gi 896405248 240 VEQLFGIVNIDNKIE-LLNYMSMHDI 264
Cdd:PRK12402 242 AYEALGDVGTDEVIEsLLDAAEAGDF 267
|
|
| PRK07399 |
PRK07399 |
DNA polymerase III subunit delta'; Validated |
19-215 |
1.91e-25 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236011 [Multi-domain] Cd Length: 314 Bit Score: 107.29 E-value: 1.91e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 19 FDDIKGQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINClhnqSDILKPCEECiKNVDRN-LDIIEI-- 95
Cdd:PRK07399 3 FANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLS----QGSPSKNIRR-RLEEGNhPDLLWVep 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 96 -----------DAASNTG----------IDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDpPSHIIF 154
Cdd:PRK07399 78 tyqhqgklitaSEAEEAGlkrkappqirLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE-PGNGTL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 896405248 155 ILATTDPQKIPETILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAInvIAkLGNGS 215
Cdd:PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILNINFPEL--LA-LAQGS 214
|
|
| rfc |
PRK00440 |
replication factor C small subunit; Reviewed |
13-281 |
2.57e-25 |
|
replication factor C small subunit; Reviewed
Pssm-ID: 234763 [Multi-domain] Cd Length: 319 Bit Score: 107.27 E-value: 2.57e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 13 KYRPKIFDDIKGQDHIVTTLKNIILNNKLSHaYLFCGPHGNGKTSTAKVFAntinclhnqsdilkpceeciknvdRNL-- 90
Cdd:PRK00440 10 KYRPRTLDEIVGQEEIVERLKSYVKEKNMPH-LLFAGPPGTGKTTAALALA------------------------RELyg 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 91 -----DIIEIDAASNTGIDDIRElkeKIKHL-----PTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTD 160
Cdd:PRK00440 65 edwreNFLELNASDERGIDVIRN---KIKEFartapVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNY 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 161 PQKIPETILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHVAIYcaNKVIKKEVV 240
Cdd:PRK00440 142 SSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAAT--GKEVTEEAV 219
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 896405248 241 EQLFGIVNIDNKIELLNYMSMHDINKTLNLARELFSQ----GIDI 281
Cdd:PRK00440 220 YKITGTARPEEIREMIELALNGDFTEAREKLRDLMIDyglsGEDI 264
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
13-245 |
3.96e-25 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 108.25 E-value: 3.96e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 13 KYRPKIFDDIKGQDHIV---TTLKNIILNNKLSHAyLFCGPHGNGKTSTAKVFANTINclhnqsdilkpceeciknvdrn 89
Cdd:PRK13342 5 RMRPKTLDEVVGQEHLLgpgKPLRRMIEAGRLSSM-ILWGPPGTGKTTLARIIAGATD---------------------- 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 90 LDIIEIDAAsNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDppSHIIFILATT-DPQ-KIPET 167
Cdd:PRK13342 62 APFEALSAV-TSGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED--GTITLIGATTeNPSfEVNPA 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 168 ILSRVQRFNFKLMT---IETLVSQ-LKDIfNKENIEYEDDAINVIAKLGNGSLRDSLSIADHVAIycANKVIKKEVVEQL 243
Cdd:PRK13342 139 LLSRAQVFELKPLSeedIEQLLKRaLEDK-ERGLVELDDEALDALARLANGDARRALNLLELAAL--GVDSITLELLEEA 215
|
..
gi 896405248 244 FG 245
Cdd:PRK13342 216 LQ 217
|
|
| PRK07940 |
PRK07940 |
DNA polymerase III subunit delta'; Validated |
18-173 |
8.40e-21 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236134 [Multi-domain] Cd Length: 394 Bit Score: 94.98 E-value: 8.40e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 18 IFDDIKGQDHIVTTLKNI---------ILNNKLSHAYLFCGPHGNGKTSTAKVFANTINClhnQSDILKPCEEC--IKNV 86
Cdd:PRK07940 3 VWDDLVGQEAVVAELRAAaraaradvaAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQC---TDPDEPGCGECraCRTV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 87 --DRNLDIIEIDAASNT-GIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQK 163
Cdd:PRK07940 80 laGTHPDVRVVAPEGLSiGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPED 159
|
170
....*....|
gi 896405248 164 IPETILSRVQ 173
Cdd:PRK07940 160 VLPTIRSRCR 169
|
|
| RarA |
COG2256 |
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ... |
15-243 |
2.09e-18 |
|
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];
Pssm-ID: 441857 [Multi-domain] Cd Length: 439 Bit Score: 88.19 E-value: 2.09e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 15 RPKIFDDIKGQDHIV---TTLKNIILNNKLsHAYLFCGPHGNGKTSTAKVFANTINclhnqsdilkpceeciknvdrnLD 91
Cdd:COG2256 20 RPRTLDEVVGQEHLLgpgKPLRRAIEAGRL-SSMILWGPPGTGKTTLARLIANATD----------------------AE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 92 IIEIDAASnTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDppSHIIFILATTdpqkipET---- 167
Cdd:COG2256 77 FVALSAVT-SGVKDIREVIEEARERRAYGRRTILFVDEIHRFNKAQQDALLPHVED--GTITLIGATT------ENpsfe 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 168 ----ILSRVQRFNFKLMT---IETLVSQ-LKDI---FNKENIEYEDDAINVIAKLGNGSLRDSLS---IADHVAIYCANK 233
Cdd:COG2256 148 vnsaLLSRCRVFVLKPLSeedLEQLLERaLADDergLGGYKLELDDEALEALARLADGDARRALNaleLAVLSAPPDGVI 227
|
250
....*....|
gi 896405248 234 VIKKEVVEQL 243
Cdd:COG2256 228 EITLELVEEA 237
|
|
| PRK05707 |
PRK05707 |
DNA polymerase III subunit delta'; Validated |
40-199 |
1.17e-16 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180215 [Multi-domain] Cd Length: 328 Bit Score: 81.67 E-value: 1.17e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 40 KLSHAYLFCGPHGNGKTSTAKVFANTINClhNQSDILKPCEEC-------IKNVDRNLDIIEIDAASNTGIDDIRELKEK 112
Cdd:PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLC--EAPQGGGACGSCkgcqllrAGSHPDNFVLEPEEADKTIKVDQVRELVSF 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 113 IKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQKIPETILSRVQRFNFKL----MTIETLVSQ 188
Cdd:PRK05707 98 VVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLpsneESLQWLQQA 177
|
170
....*....|.
gi 896405248 189 LKDIFNKENIE 199
Cdd:PRK05707 178 LPESDERERIE 188
|
|
| PRK04195 |
PRK04195 |
replication factor C large subunit; Provisional |
13-217 |
1.66e-16 |
|
replication factor C large subunit; Provisional
Pssm-ID: 235250 [Multi-domain] Cd Length: 482 Bit Score: 82.66 E-value: 1.66e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 13 KYRPKIFDDIKGQDHIVTTLKNII---LNNKLSHAYLFCGPHGNGKTSTAKVFANTINC----LhNQSDilkpceecikn 85
Cdd:PRK04195 7 KYRPKTLSDVVGNEKAKEQLREWIeswLKGKPKKALLLYGPPGVGKTSLAHALANDYGWevieL-NASD----------- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 86 vDRNLDIIE--IDAASNTGIddirelkekikhLpTQSKYKIYIIDEVHMLSKAA----FNALLKTIEDPPSHIIfiLATT 159
Cdd:PRK04195 75 -QRTADVIErvAGEAATSGS------------L-FGARRKLILLDEVDGIHGNEdrggARAILELIKKAKQPII--LTAN 138
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 896405248 160 DPQKIP-ETILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLR 217
Cdd:PRK04195 139 DPYDPSlRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLR 197
|
|
| PRK05917 |
PRK05917 |
DNA polymerase III subunit delta'; Validated |
103-200 |
1.71e-16 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 102059 [Multi-domain] Cd Length: 290 Bit Score: 80.61 E-value: 1.71e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 103 IDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQKIPETILSRVQRFNFKLmti 182
Cdd:PRK05917 77 IETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPM--- 153
|
90
....*....|....*...
gi 896405248 183 etlvsQLKDIFNKENIEY 200
Cdd:PRK05917 154 -----EEKTLVSKEDIAY 166
|
|
| PRK05564 |
PRK05564 |
DNA polymerase III subunit delta'; Validated |
19-199 |
2.04e-15 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180132 [Multi-domain] Cd Length: 313 Bit Score: 77.77 E-value: 2.04e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 19 FDDIKGQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANtinclhnqsDILKpceecIKNVDRNLDIIE--ID 96
Cdd:PRK05564 3 FHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIAL---------KILG-----KSQQREYVDIIEfkPI 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 97 AASNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQKIPETILSRVQRFN 176
Cdd:PRK05564 69 NKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYK 148
|
170 180
....*....|....*....|...
gi 896405248 177 FKLMTIETLVSQLKDIFNKENIE 199
Cdd:PRK05564 149 LNRLSKEEIEKFISYKYNDIKEE 171
|
|
| PRK08769 |
PRK08769 |
DNA polymerase III subunit delta'; Validated |
40-179 |
5.13e-15 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181551 [Multi-domain] Cd Length: 319 Bit Score: 76.54 E-value: 5.13e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 40 KLSHAYLFCGPHGNGKTSTAKVFANTINCLHNQSDILKPCEECIK-NVDRNLDIIEIdAASNTG--------IDDIRELK 110
Cdd:PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAaGTHPDLQLVSF-IPNRTGdklrteivIEQVREIS 102
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 896405248 111 EKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQKIPETILSRVQRFNFKL 179
Cdd:PRK08769 103 QKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKL 171
|
|
| PRK06871 |
PRK06871 |
DNA polymerase III subunit delta'; Validated |
43-176 |
6.06e-15 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180738 [Multi-domain] Cd Length: 325 Bit Score: 76.31 E-value: 6.06e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 43 HAYLFCGPHGNGKTSTAKVFANTINCLHNQSDilKPCEEC----------------IKNVDrNLDIieidaasntGIDDI 106
Cdd:PRK06871 25 HALLFKADSGLGTEQLIRALAQWLMCQTPQGD--QPCGQChschlfqagnhpdfhiLEPID-NKDI---------GVDQV 92
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 107 RELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQKIPETILSRVQRFN 176
Cdd:PRK06871 93 REINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWL 162
|
|
| HLD_clamp_pol_III_gamma_tau |
cd18137 |
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit ... |
180-245 |
1.03e-14 |
|
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit gamma/tau is part of the DNA polymerase III holoenzyme. Gamma and tau subunits are isoforms, both containing the helical lid domain. Gamma interacts with the delta subunit to transfer the beta subunit on the DNA while tau serves as a scaffold to help in the dimerization of the core complex. Both are members of the clamp-loader clade of the AAA+ superfamily.
Pssm-ID: 350839 [Multi-domain] Cd Length: 65 Bit Score: 69.07 E-value: 1.03e-14
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 896405248 180 MTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHVAIYCANKvIKKEVVEQLFG 245
Cdd:cd18137 1 ISVEDIVGRLAHILEKEGIEIEDEALELIARAAEGSMRDALSLLDQAIAFGGGR-VTLDDVREMLG 65
|
|
| PRK09112 |
PRK09112 |
DNA polymerase III subunit delta'; Validated |
40-225 |
4.69e-14 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 169667 [Multi-domain] Cd Length: 351 Bit Score: 73.92 E-value: 4.69e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 40 KLSHAYLFCGPHGNGKTSTAKVFANTI--NCLHNQ--SDILKP-------------CEECIKNVDRNLDiiEIDAASNTG 102
Cdd:PRK09112 43 KLHHALLFEGPEGIGKATLAFHLANHIlsHPDPAEapETLADPdpaspvwrqiaqgAHPNLLHITRPFD--EKTGKFKTA 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 103 I--DDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQKIPETILSRVQRFNFKLM 180
Cdd:PRK09112 121 ItvDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPL 200
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 896405248 181 TIETLVSQLKDIFNKENIeyEDDAINVIAKLGNGSLRDSLSIADH 225
Cdd:PRK09112 201 DDDELKKALSHLGSSQGS--DGEITEALLQRSKGSVRKALLLLNY 243
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
23-179 |
6.69e-14 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 69.48 E-value: 6.69e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 23 KGQDHIVTTLKNIILNNKLSHaYLFCGPHGNGKTSTAKVFANTInclhnqsdilkpceeciknVDRNLDIIEIDAASNTG 102
Cdd:cd00009 1 VGQEEAIEALREALELPPPKN-LLLYGPPGTGKTTLARAIANEL-------------------FRPGAPFLYLNASDLLE 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 103 IDDIREL-----KEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIED------PPSHIIFILATTDP--QKIPETIL 169
Cdd:cd00009 61 GLVVAELfghflVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETlndlriDRENVRVIGATNRPllGDLDRALY 140
|
170
....*....|.
gi 896405248 170 SR-VQRFNFKL 179
Cdd:cd00009 141 DRlDIRIVIPL 151
|
|
| PLN03025 |
PLN03025 |
replication factor C subunit; Provisional |
13-220 |
1.28e-13 |
|
replication factor C subunit; Provisional
Pssm-ID: 178596 [Multi-domain] Cd Length: 319 Bit Score: 72.45 E-value: 1.28e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 13 KYRPKIFDDIKGQDHIVTTLKNIILNNKLSHaYLFCGPHGNGKTStakvfanTINCLHNQsdILKPceeCIKNVdrnldI 92
Cdd:PLN03025 6 KYRPTKLDDIVGNEDAVSRLQVIARDGNMPN-LILSGPPGTGKTT-------SILALAHE--LLGP---NYKEA-----V 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 93 IEIDAASNTGIDDIRelkEKIK-------HLPTqSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQKIP 165
Cdd:PLN03025 68 LELNASDDRGIDVVR---NKIKmfaqkkvTLPP-GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKII 143
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 896405248 166 ETILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSL 220
Cdd:PLN03025 144 EPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQAL 198
|
|
| 44 |
PHA02544 |
clamp loader, small subunit; Provisional |
8-211 |
7.22e-13 |
|
clamp loader, small subunit; Provisional
Pssm-ID: 222866 [Multi-domain] Cd Length: 316 Bit Score: 70.02 E-value: 7.22e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 8 LALYRKYRPKIFDDIKGQDHIVTTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINClhnqsdilkpceeciknvd 87
Cdd:PHA02544 9 FMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA------------------- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 88 rnlDIIEIDAASNtGIDDIR-ELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKT-IEDPPSHIIFILATTDPQKIP 165
Cdd:PHA02544 70 ---EVLFVNGSDC-RIDFVRnRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSfMEAYSKNCSFIITANNKNGII 145
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 896405248 166 ETILSRVQRFNF-------KLMTIETLVSQLKDIFNKENIEYEDdaiNVIAKL 211
Cdd:PHA02544 146 EPLRSRCRVIDFgvptkeeQIEMMKQMIVRCKGILEAEGVEVDM---KVLAAL 195
|
|
| PRK13341 |
PRK13341 |
AAA family ATPase; |
15-223 |
1.38e-12 |
|
AAA family ATPase;
Pssm-ID: 237354 [Multi-domain] Cd Length: 725 Bit Score: 70.85 E-value: 1.38e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 15 RPKIFDDIKGQDHIVTT---LKNIILNNKLSHAyLFCGPHGNGKTSTAKVFANTINClhnqsdilkpceeciknvdrnlD 91
Cdd:PRK13341 23 RPRTLEEFVGQDHILGEgrlLRRAIKADRVGSL-ILYGPPGVGKTTLARIIANHTRA----------------------H 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 92 IIEIDAASnTGIDDIR-ELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDppSHIIFILATTD-PQ-KIPETI 168
Cdd:PRK13341 80 FSSLNAVL-AGVKDLRaEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVEN--GTITLIGATTEnPYfEVNKAL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 896405248 169 LSRVQRFNFKLMTIETL---VSQ-LKDI---FNKENIEYEDDAINVIAKLGNG---SLRDSLSIA 223
Cdd:PRK13341 157 VSRSRLFRLKSLSDEDLhqlLKRaLQDKergYGDRKVDLEPEAEKHLVDVANGdarSLLNALELA 221
|
|
| PRK07276 |
PRK07276 |
DNA polymerase III subunit delta'; Validated |
35-178 |
2.29e-12 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180916 [Multi-domain] Cd Length: 290 Bit Score: 68.12 E-value: 2.29e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 35 IILNNKLSHAYLFCGPHGNgkTSTAKVFANTINCLhNQSDILkPCEECiknvdRNLDIIEIDAASNTGI----------D 104
Cdd:PRK07276 17 ILEQDRLNHAYLFSGDFAS--FEMALFLAQSLFCE-QKEGVL-PCGHC-----RSCRLIEQGEFSDVTViepqgqviktD 87
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 896405248 105 DIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQKIPETILSRVQRFNFK 178
Cdd:PRK07276 88 TIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFP 161
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
19-218 |
2.17e-11 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440836 [Multi-domain] Cd Length: 246 Bit Score: 64.52 E-value: 2.17e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 19 FDDIKGQDHIVTTLKNII-----------LNNKLSHAYLFCGPHGNGKTSTAKVFANTInclhnqsdilkpceeciknvd 87
Cdd:COG1223 1 LDDVVGQEEAKKKLKLIIkelrrrenlrkFGLWPPRKILFYGPPGTGKTMLAEALAGEL--------------------- 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 88 rNLDIIEI-----------DAASNtgiddIRELKEKIKHLPTqskykIYIIDEVHML------------SKAAFNALLKT 144
Cdd:COG1223 60 -KLPLLTVrldsligsylgETARN-----LRKLFDFARRAPC-----VIFFDEFDAIakdrgdqndvgeVKRVVNALLQE 128
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 896405248 145 IEDPPSHIIFILATTDPQKIPETILSRVQ-RFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRD 218
Cdd:COG1223 129 LDGLPSGSVVIAATNHPELLDSALWRRFDeVIEFPLPDKEERKEILELNLKKFPLPFELDLKKLAKKLEGLSGAD 203
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
45-178 |
4.02e-11 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 61.07 E-value: 4.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 45 YLFCGPHGNGKTSTAKVFANTINclhnqsdilkpceeciknvdrnLDIIEIDAASNTGI------DDIRELKEKIKHLPT 118
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKELG----------------------APFIEISGSELVSKyvgeseKRLRELFEAAKKLAP 58
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 896405248 119 qskyKIYIIDEVHMLSKA-----------AFNALLKTIEDP---PSHIIFILATTDPQKIPETILSRVQRFNFK 178
Cdd:pfam00004 59 ----CVIFIDEIDALAGSrgsggdsesrrVVNQLLTELDGFtssNSKVIVIAATNRPDKLDPALLGRFDRIIEF 128
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
12-195 |
7.22e-11 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 64.55 E-value: 7.22e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 12 RKYRPKIFDDIKGQDHIVTTLKNIIL----NNKLSHAY--------LFCGPHGNGKTSTAKVFANTINclhnqsdilkpc 79
Cdd:COG0464 149 LELREAILDDLGGLEEVKEELRELVAlplkRPELREEYglppprglLLYGPPGTGKTLLARALAGELG------------ 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 80 eeciknvdrnLDIIEIDAAS-----------NtgiddIRELKEKIKHL-PTqskykIYIIDEVHML-----------SKA 136
Cdd:COG0464 217 ----------LPLIEVDLSDlvskyvgetekN-----LREVFDKARGLaPC-----VLFIDEADALagkrgevgdgvGRR 276
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 137 AFNALLKTIEDPPSHIIFILATTDPQKIPETILSRVQR-FNFKLMTIEtlvsQLKDIFNK 195
Cdd:COG0464 277 VVNTLLTEMEELRSDVVVIAATNRPDLLDPALLRRFDEiIFFPLPDAE----ERLEIFRI 332
|
|
| PRK08699 |
PRK08699 |
DNA polymerase III subunit delta'; Validated |
40-175 |
7.84e-11 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181538 [Multi-domain] Cd Length: 325 Bit Score: 63.74 E-value: 7.84e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 40 KLSHAYLFCGPHGNGKTSTAKVFANTINCLHNQSDiLKPCEECI----------------------KNVDRNLDIIEIDA 97
Cdd:PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPG-HKPCGECMschlfgqgshpdfyeitplsdePENGRKLLQIKIDA 97
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 896405248 98 asntgiddIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQKIPETILSRVQRF 175
Cdd:PRK08699 98 --------VREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKM 167
|
|
| PRK07993 |
PRK07993 |
DNA polymerase III subunit delta'; Validated |
99-171 |
1.96e-10 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181190 [Multi-domain] Cd Length: 334 Bit Score: 62.78 E-value: 1.96e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 896405248 99 SNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQKIPETILSR 171
Cdd:PRK07993 86 SSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSR 158
|
|
| PRK07132 |
PRK07132 |
DNA polymerase III subunit delta'; Validated |
32-335 |
2.43e-10 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180855 [Multi-domain] Cd Length: 299 Bit Score: 62.05 E-value: 2.43e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 32 LKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINCLHNQSDILKPCEECIKNVDRNLDIIEIDaasntgiDDIRELKE 111
Cdd:PRK07132 8 LDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKS-------EFLSAINK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 112 KIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQKIPETILSRVQRFNFKLMtietlvSQLKD 191
Cdd:PRK07132 81 LYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEP------DQQKI 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 192 IFNKENIEYEDDAINVIAKLGNGslrdslsiadhvaIYCANKVIKKEVVEQLFGIVNIDNKIELLNYMSMHDINKTLNLA 271
Cdd:PRK07132 155 LAKLLSKNKEKEYNWFYAYIFSN-------------FEQAEKYINKESENLLKKFEEALNKSLKEKYELILFLNKKLTKE 221
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 896405248 272 RELFsqgidinilINDLINILKEWIIFNKTRDQSLVSTDFKILLQ-IKIDDAKAHYYIETLIDQL 335
Cdd:PRK07132 222 NALF---------LLKLLKFFFKSIFANKKKKNPKNIKVAFSKKKkFKIEFFELITIIDEFLNSL 277
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
91-240 |
8.50e-10 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 62.16 E-value: 8.50e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 91 DIIEIDAASNTGIDDIRE-LKEKIKHLPT-QSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQKIPETI 168
Cdd:PRK04132 598 NFLELNASDERGINVIREkVKEFARTKPIgGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPI 677
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 896405248 169 LSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHVAiyCANKVIKKEVV 240
Cdd:PRK04132 678 QSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAA--ALDDKITDENV 747
|
|
| PRK06090 |
PRK06090 |
DNA polymerase III subunit delta'; Validated |
40-190 |
2.22e-09 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180394 [Multi-domain] Cd Length: 319 Bit Score: 59.43 E-value: 2.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 40 KLSHAYLFCGPHGNGKTSTAKVFANTINCLHNQSDILKPCEECIKNVDRN---LDII--EIDAASNTgIDDIRELKeKIK 114
Cdd:PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNhpdLHVIkpEKEGKSIT-VEQIRQCN-RLA 100
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 896405248 115 HLPTQ-SKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQKIPETILSRVQRFNFKLMTIETLVSQLK 190
Cdd:PRK06090 101 QESSQlNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLK 177
|
|
| PRK06964 |
PRK06964 |
DNA polymerase III subunit delta'; Validated |
37-175 |
2.56e-09 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235898 [Multi-domain] Cd Length: 342 Bit Score: 59.39 E-value: 2.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 37 LNNKLSHAYLFCGPHGNGKTSTAKVFANTINCLHNQSDiLKPCEECI--------KNVDRNLDIIEI-DAASNTGIDDIR 107
Cdd:PRK06964 16 LRARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPD-GEPCGTCAacnwfaqgNHPDYRIVRPEAlAAEAPGAADEAK 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 108 ELKEKIKHLPTQSKYKIYIIDEVHMLSK------------------------AAFNALLKTIEDPPSHIIFILATTDPQK 163
Cdd:PRK06964 95 EADADEGGKKTKAPSKEIKIEQVRALLDfcgvgthrggarvvvlypaealnvAAANALLKTLEEPPPGTVFLLVSARIDR 174
|
170
....*....|..
gi 896405248 164 IPETILSRVQRF 175
Cdd:PRK06964 175 LLPTILSRCRQF 186
|
|
| HolA |
COG1466 |
DNA polymerase III, delta subunit [Replication, recombination and repair]; |
83-323 |
1.61e-08 |
|
DNA polymerase III, delta subunit [Replication, recombination and repair];
Pssm-ID: 441075 [Multi-domain] Cd Length: 305 Bit Score: 56.41 E-value: 1.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 83 IKNVDRNLDIIEIDAASntgiDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSK--AAFNALLKTIEDPPSHIIFILATTD 160
Cdd:COG1466 28 ALAEDDGFNRTRLDGAE----TDWAELLDEAQTLSLFGERRLVIVRNAEFLKKpgEGLEALEAYLANPPPDTVLVLTAGK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 161 P---QKIPETILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHVAIYC-ANKVIK 236
Cdd:COG1466 104 LdkrKKLFKALEKAGVVVECYPLKERELPAWIRQRLKAAGLRIDPDAAQLLAERVGGDLLALAQELEKLALYAgDGGTIT 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 237 KEVVEQLFGIVNIDNKIELLNYMSMHDINKTLNLARELFSQGIDINILIndlinilkewiifnktrdqSLVSTDFKILLQ 316
Cdd:COG1466 184 LEDVEALVGDSAEFNVFDLADALLAGDAARALRILRRLLAEGEEPVLIL-------------------AALARQFRLLLQ 244
|
....*..
gi 896405248 317 IKIDDAK 323
Cdd:COG1466 245 VKALLAQ 251
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
37-179 |
2.76e-08 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 53.44 E-value: 2.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 37 LNNKLSHAYLFCGPHGNGKTSTAKVFANTINC--LHNQSDILkpceeciknvdrnldiieIDAASNTGIDDIRELKEKIK 114
Cdd:cd19481 21 YGLGLPKGILLYGPPGTGKTLLAKALAGELGLplIVVKLSSL------------------LSKYVGESEKNLRKIFERAR 82
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 896405248 115 hlptQSKYKIYIIDEVHMLSK------------AAFNALLKTIEDPP--SHIIFILATTDPQKIPETILsRVQRFNFKL 179
Cdd:cd19481 83 ----RLAPCILFIDEIDAIGRkrdssgesgelrRVLNQLLTELDGVNsrSKVLVIAATNRPDLLDPALL-RPGRFDEVI 156
|
|
| PRK07471 |
PRK07471 |
DNA polymerase III subunit delta'; Validated |
103-224 |
9.45e-08 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236022 [Multi-domain] Cd Length: 365 Bit Score: 54.65 E-value: 9.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 103 IDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQKIPETILSRVQRFNFKLMTI 182
Cdd:PRK07471 123 VDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAP 202
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 896405248 183 ETLVSQLKDifnkENIEYEDDAINVIAKLGNGSLRDSLSIAD 224
Cdd:PRK07471 203 EDVIDALAA----AGPDLPDDPRAALAALAEGSVGRALRLAG 240
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
45-180 |
8.00e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 48.91 E-value: 8.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 45 YLFCGPHGNGKTSTAKVFANTINCLHNQSdILKPCEE--CIKNVDRNLDIIEIDAASNTGIDDIRELKEKIKhlptQSKY 122
Cdd:smart00382 5 ILIVGPPGSGKTTLARALARELGPPGGGV-IYIDGEDilEEVLDQLLLIIVGGKKASGSGELRLRLALALAR----KLKP 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 896405248 123 KIYIIDEVHMLSKAAFNALL--------KTIEDPPSHIIFILATTDPQKIPETILSRvqRFNFKLM 180
Cdd:smart00382 80 DVLILDEITSLLDAEQEALLllleelrlLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIV 143
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
13-64 |
2.81e-06 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 50.61 E-value: 2.81e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 896405248 13 KYRPKIFDDIKGQDHIVTTLKNIILNNKLSHaYLFCGPHGNGK--TSTAKVFAN 64
Cdd:PRK04132 12 KYRPQRLDDIVGQEHIVKRLKHYVKTGSMPH-LLFAGPPGVGKclTGDTKVIAN 64
|
|
| HLD_clamp |
cd18133 |
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit ... |
183-242 |
1.77e-05 |
|
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit complexes that play an important role in DNA replication. They open sliding clamps for assembly and close them around DNA, specifically targeting them to sites where DNA synthesis is initiated and orienting them correctly for replication. The subunits belong to the clamp loader clade of AAA+ superfamily.
Pssm-ID: 350838 [Multi-domain] Cd Length: 65 Bit Score: 42.84 E-value: 1.77e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 183 ETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHVAIYCANKVIKKEVVEQ 242
Cdd:cd18133 4 EQLKRRLAAIAEQEKLKLDDAALQALAYISEGDLRKALNALQRAAALGDDGKISLDRVYQ 63
|
|
| ruvB |
PRK00080 |
Holliday junction branch migration DNA helicase RuvB; |
15-252 |
2.31e-04 |
|
Holliday junction branch migration DNA helicase RuvB;
Pssm-ID: 234619 [Multi-domain] Cd Length: 328 Bit Score: 43.97 E-value: 2.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 15 RPKIFDDIKGQDHIVTTLKNII-----LNNKLSHAyLFCGPHGNGKTSTAKVFANTINClhNqsdilkpceecIK----- 84
Cdd:PRK00080 20 RPKSLDEFIGQEKVKENLKIFIeaakkRGEALDHV-LLYGPPGLGKTTLANIIANEMGV--N-----------IRitsgp 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 85 NVDRNLDIIEIdaASNtgiddireLKEKikhlptqskyKIYIIDEVHMLSKAAFNALLKTIED----------PPSHII- 153
Cdd:PRK00080 86 ALEKPGDLAAI--LTN--------LEEG----------DVLFIDEIHRLSPVVEEILYPAMEDfrldimigkgPAARSIr 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 154 -----FIL--ATTDPQKIPETILSR---VQRFNFklMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRdslsIA 223
Cdd:PRK00080 146 ldlppFTLigATTRAGLLTSPLRDRfgiVQRLEF--YTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPR----IA 219
|
250 260 270
....*....|....*....|....*....|....*..
gi 896405248 224 --------DHvAIYCANKVIKKEVVEQLFGIVNIDNK 252
Cdd:PRK00080 220 nrllrrvrDF-AQVKGDGVITKEIADKALDMLGVDEL 255
|
|
| holA |
TIGR01128 |
DNA polymerase III, delta subunit; DNA polymerase III delta (holA) and delta prime (holB) ... |
133-319 |
2.46e-04 |
|
DNA polymerase III, delta subunit; DNA polymerase III delta (holA) and delta prime (holB) subunits are distinct proteins encoded by separate genes. The delta prime subunit (holB) exhibits sequence homology to the tau and gamma subunits (dnaX), but the delta subunit (holA) does not demonstrate this same homology with dnaX. The delta, delta prime, gamma, chi and psi subunits form the gamma complex subassembly of DNA polymerase III holoenzyme, which couples ATP to assemble the ring-shaped beta subunit around DNA forming a DNA sliding clamp. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273455 [Multi-domain] Cd Length: 302 Bit Score: 43.40 E-value: 2.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 133 LSKAAFNALLKTIEDPPSHIIFILATTDP------QKIPETILSRVQrFNFKLMTIETLVSQLKDIFNKENIEYEDDAIN 206
Cdd:TIGR01128 59 PGAKGLKALEEYLANPPPDTLLLIEAPKLdkrkklTKWLKALKNAEI-VECKTPKEQELPRWIQARLKKLGLRIDPDAVQ 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 207 VIAKLGNGSLRDSLSIADHVAIYCANKVIKKEVVEQLFGIVNIDNKIELLNYMSMHDINKTLNLARELFSQGIDINILIn 286
Cdd:TIGR01128 138 LLAELVEGNLLAIAQELEKLALYAPDGKITLEDVEEAVSDSARFNVFDLTDALLEGKAARALRILKGLLGEGEEPLILL- 216
|
170 180 190
....*....|....*....|....*....|...
gi 896405248 287 dlinilkewiifnktrdqSLVSTDFKILLQIKI 319
Cdd:TIGR01128 217 ------------------ALLQRQLRLLLQLKR 231
|
|
| PRK08485 |
PRK08485 |
DNA polymerase III subunit delta'; Validated |
125-178 |
2.68e-04 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236274 [Multi-domain] Cd Length: 206 Bit Score: 42.71 E-value: 2.68e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 896405248 125 YIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQKIPETILSRVQRFNFK 178
Cdd:PRK08485 58 IIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIEKRK 111
|
|
| PRK05818 |
PRK05818 |
DNA polymerase III subunit delta'; Validated |
123-175 |
2.79e-04 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235618 [Multi-domain] Cd Length: 261 Bit Score: 43.28 E-value: 2.79e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 896405248 123 KIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQKIPETILSRVQRF 175
Cdd:PRK05818 90 KIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQY 142
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
46-157 |
9.08e-04 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 39.63 E-value: 9.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 46 LFCGPHGNGKTSTAKVFANTincLHNQSD----ILKPCEECIKNVDRNLdIIEIDAASNTGiDDIRELKEKI-KHLPTQS 120
Cdd:pfam13401 9 VLTGESGTGKTTLLRRLLEQ---LPEVRDsvvfVDLPSGTSPKDLLRAL-LRALGLPLSGR-LSKEELLAALqQLLLALA 83
|
90 100 110
....*....|....*....|....*....|....*...
gi 896405248 121 KYKIYIIDEVHMLSKAAFNaLLKTIEDPPSHII-FILA 157
Cdd:pfam13401 84 VAVVLIIDEAQHLSLEALE-ELRDLLNLSSKLLqLILV 120
|
|
| PRK06581 |
PRK06581 |
DNA polymerase III subunit delta'; Validated |
98-200 |
9.28e-04 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235833 [Multi-domain] Cd Length: 263 Bit Score: 41.75 E-value: 9.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 98 ASNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQKIPETILSRVQRFNF 177
Cdd:PRK06581 66 AKNISIEQIRKLQDFLSKTSAISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRCFKINV 145
|
90 100
....*....|....*....|....*..
gi 896405248 178 K---LMTIETLVSQ-LKDIFNKENIEY 200
Cdd:PRK06581 146 RssiLHAYNELYSQfIQPIADNKTLDF 172
|
|
| TIP49 |
COG1224 |
DNA helicase TIP49, TBP-interacting protein [Transcription]; |
127-242 |
3.10e-03 |
|
DNA helicase TIP49, TBP-interacting protein [Transcription];
Pssm-ID: 440837 [Multi-domain] Cd Length: 452 Bit Score: 40.34 E-value: 3.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896405248 127 IDEVHMLSKAAFNALLKTIEDPPSHIIfILAT---------TD---PQKIPETILSRvqrfnfkLMTIET---LVSQLKD 191
Cdd:COG1224 298 IDDAHMLDIEAFSFLTRAMESELAPII-ILATnrgitkirgTDiesPHGIPLDLLDR-------LLIIPTrpyTEDEIRE 369
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 896405248 192 IF----NKENIEYEDDAINVIAKLG-NGSLRDS---LSIADHVAIYCANKVIKKEVVEQ 242
Cdd:COG1224 370 IIkiraEEEDIELSDDALEELTKIGvERSLRYAvqlLEPAYIIAKRRGRSKVTVEDVEE 428
|
|
| RuvB_N |
pfam05496 |
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the ... |
15-64 |
3.86e-03 |
|
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Pssm-ID: 398900 [Multi-domain] Cd Length: 159 Bit Score: 38.64 E-value: 3.86e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 896405248 15 RPKIFDDIKGQDHIVTTLKNIILNNK-----LSHAyLFCGPHGNGKTSTAKVFAN 64
Cdd:pfam05496 2 RPRTLDEYIGQEKVKENLKIFIEAAKqrgeaLDHV-LLYGPPGLGKTTLANIIAN 55
|
|
| HLD_clamp_RFC |
cd18140 |
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein ... |
183-217 |
9.59e-03 |
|
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein clamp loader complex that forms a stable ATP-dependent complex with the sliding clamp, PCNA, which binds specifically to primed DNA. RFC subunits belong to the clamp loader clade of the AAA+ superfamily.
Pssm-ID: 350842 [Multi-domain] Cd Length: 63 Bit Score: 35.20 E-value: 9.59e-03
10 20 30
....*....|....*....|....*....|....*
gi 896405248 183 ETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLR 217
Cdd:cd18140 4 EQIVKRLREICKKEGVKIDEEALEAIAEKSEGDMR 38
|
|
| |
