|
Name |
Accession |
Description |
Interval |
E-value |
| SigH_actino |
TIGR02947 |
RNA polymerase sigma-70 factor, TIGR02947 family; This group of sigma factors are members of ... |
6-196 |
7.19e-105 |
|
RNA polymerase sigma-70 factor, TIGR02947 family; This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and (with the exception of a paralog in Thermobifida fusca YX) one-to-a-genome distribution, to represent a conserved family. This family is restricted to the Actinobacteria and each gene examined is followed by an anti-sigma factor in an apparent operon.
Pssm-ID: 131992 [Multi-domain] Cd Length: 193 Bit Score: 301.51 E-value: 7.19e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 6 TAADTRELRERFTADAMQYVDQLYAAALRMSRNSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYINLYRKR 85
Cdd:TIGR02947 2 AEETKTQRAQRFERDALEYLDQLYGAALRMTRNPADAEDLVQEAYAKAFSSFHQFKPGTNLKAWLYRILTNTYINSYRKA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 86 QREPQQSQGETVEDWQLAQAGEHDAVGLRSAEVEALSALPNTEVREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPL 165
Cdd:TIGR02947 82 QRRPQQSDDDDIEDWQLAKAASHTSNGLRSAELEALDGLPDQDIKDALQGLPEEFRQAVYLADVEGFAYKEIAEIMGTPI 161
|
170 180 190
....*....|....*....|....*....|.
gi 896410632 166 GTVMSRLHRGRRILREKLLDYARENGLRPST 196
Cdd:TIGR02947 162 GTVMSRLHRGRKQLRKQLVDVAGERGFGPRA 192
|
|
| PRK09652 |
PRK09652 |
RNA polymerase sigma factor RpoE; Provisional |
14-189 |
3.07e-72 |
|
RNA polymerase sigma factor RpoE; Provisional
Pssm-ID: 236608 [Multi-domain] Cd Length: 182 Bit Score: 218.52 E-value: 3.07e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 14 RERFTADAMQYVDQLYAAALRMSRNSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYINLYRKRQREPQQSQ 93
Cdd:PRK09652 9 RAAFALLVRRYQPRVKRLLSRLTRDPADAEDLVQETFIKAYRALHSFRGGAAFYTWLYRIARNTAINYLRKQGRRPPASD 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 94 GET--VEDWQLAQAGEHDAvglrSAEVEALSALPNTEVREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSR 171
Cdd:PRK09652 89 VDAeeAEDFDLADALRDIS----TPENELLSAELEQRVRAAIESLPEELRTAITLREIEGLSYEEIAEIMGCPIGTVRSR 164
|
170
....*....|....*...
gi 896410632 172 LHRGRRILREKLLDYARE 189
Cdd:PRK09652 165 IFRAREALRAKLQPLLDE 182
|
|
| RpoE |
COG1595 |
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; ... |
14-189 |
4.47e-47 |
|
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; DNA-directed RNA polymerase specialized sigma subunit, sigma24 family is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 441203 [Multi-domain] Cd Length: 181 Bit Score: 154.38 E-value: 4.47e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 14 RERFTADAMQYVDQLYAAALRMSRNSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYINLYRKRQREPQqsq 93
Cdd:COG1595 16 EAAFEELYERYRPRLYRYARRLLGDRADAEDLVQETFLRLWRKLDSFRGRGSFRAWLYRIARNLAIDHLRKRRRRRE--- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 94 getvedwQLAQAGEHDAVGLRSAEVEALSALPNTEVREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLH 173
Cdd:COG1595 93 -------LLDELAEELPDEAADPEEALEAEELLEALLAALERLPPRQREVLVLRYLEGLSYAEIAEILGISEGTVKSRLS 165
|
170
....*....|....*.
gi 896410632 174 RGRRILREKLLDYARE 189
Cdd:COG1595 166 RARKKLREALEEEGAL 181
|
|
| PRK11924 |
PRK11924 |
RNA polymerase sigma factor; Provisional |
6-185 |
6.91e-39 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183384 [Multi-domain] Cd Length: 179 Bit Score: 133.17 E-value: 6.91e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 6 TAADTRELRERFTADAMQYVDQLYAAALRMSRNSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYINLYRKR 85
Cdd:PRK11924 4 MPVDATGDKEAFSELFRPHAPDLLRYARRQLGDRALAEDAVQEAFLRAWRKADLFNGKGSARTWLLTIARNVCYDLLRRR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 86 QREPqqsQGETVEDWQLAQAGEHDAVglrsaEVEALSALPNTEVREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPL 165
Cdd:PRK11924 84 RREK---AVLSDDALEPEFAETAETP-----EAALLAKDDLARIDRCLDALPVKQREVFLLRYVEGLSYREIAEILGVPV 155
|
170 180
....*....|....*....|
gi 896410632 166 GTVMSRLHRGRRILREKLLD 185
Cdd:PRK11924 156 GTVKSRLRRARQLLRECLEA 175
|
|
| PRK09647 |
PRK09647 |
RNA polymerase sigma factor SigE; Reviewed |
23-195 |
3.59e-33 |
|
RNA polymerase sigma factor SigE; Reviewed
Pssm-ID: 236606 [Multi-domain] Cd Length: 203 Bit Score: 119.12 E-value: 3.59e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 23 QYVDQLYAAALRMSRNSADAEDLVQETYMKAFASYHQFTEGTnLKAWLYRILTNTYINLYRKRQREPQQSQGEtvedwql 102
Cdd:PRK09647 36 QHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSLQNYQPGT-FEGWLHRITTNLFLDMVRRRARIRMEALPE------- 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 103 aqagEHDAVGLRSAEVEALSALPN--TEVREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRGRRILR 180
Cdd:PRK09647 108 ----DYDRVPGDEPNPEQIYHDARldPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIAATLGVKLGTVRSRIHRGRQQLR 183
|
170
....*....|....*
gi 896410632 181 EKLLDYARENGLRPS 195
Cdd:PRK09647 184 AALAAHAPHAECAAL 198
|
|
| sigma70-ECF |
TIGR02937 |
RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the ... |
15-183 |
4.19e-33 |
|
RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Pssm-ID: 274357 [Multi-domain] Cd Length: 158 Bit Score: 117.45 E-value: 4.19e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 15 ERFTADAMQYVDQLYAAALRMSRNSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYINLYRKRQREPqqsqg 94
Cdd:TIGR02937 1 EAFEELYERYLPLVYRYARRYLGDDADAEDLVQEAFLKLLEALDRFDPEGSFKAWLFRIARNLILDYLRRKRRLR----- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 95 etVEDWQLAQAGEHDAvglrSAEVEALSALPNTEVREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHR 174
Cdd:TIGR02937 76 --RELDLLEELLDSDP----SPEEELEQEEEREALREALEKLPEREREVLVLRYLEGLSYKEIAEILGISVGTVKRRLKR 149
|
....*....
gi 896410632 175 GRRILREKL 183
Cdd:TIGR02937 150 ARKKLRELL 158
|
|
| PRK12546 |
PRK12546 |
RNA polymerase sigma factor; Provisional |
28-183 |
6.35e-31 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 139055 [Multi-domain] Cd Length: 188 Bit Score: 113.01 E-value: 6.35e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 28 LYAAALRMSRNSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYINLYRKRQREPQQSQGETVEdwQLAQAGE 107
Cdd:PRK12546 20 LRAFAISLTRNVAVADDLVQDTIVKAWTNFDKFQEGTNLRAWLFTILRNTFYSDRRKHKREVPDPEGVHAA--SLAVKPA 97
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 896410632 108 HDAvglrsaevealsALPNTEVREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRGRRILREKL 183
Cdd:PRK12546 98 HDG------------RLAMSDFRAAFAQLPDEQREALILVGASGFSYEEAAEMCGVAVGTVKSRANRARARLAELL 161
|
|
| PRK09641 |
PRK09641 |
RNA polymerase sigma factor SigW; Provisional |
24-183 |
1.79e-29 |
|
RNA polymerase sigma factor SigW; Provisional
Pssm-ID: 182012 [Multi-domain] Cd Length: 187 Bit Score: 109.02 E-value: 1.79e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 24 YVDQLYAAALRMSRNSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYINLYRKR------QREPQQSQGETV 97
Cdd:PRK09641 27 YKDKIYQLCYRMLGNRHEAEDAAQEAFIRAYVNIDSYDINRKFSTWLYRIATNLTIDRLRKRkpdyylDAEVAGTEGLTM 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 98 EDwQLAQAGehdavglRSAEVEALSALPNTEVREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRGRR 177
Cdd:PRK09641 107 YS-QLAADD-------ALPEEQVVSLELQETIQEAILQLPEKYRTVIVLKYIEDLSLKEISEILDLPVGTVKTRIHRGRE 178
|
....*.
gi 896410632 178 ILREKL 183
Cdd:PRK09641 179 ALRKQL 184
|
|
| PRK12522 |
PRK12522 |
RNA polymerase sigma factor; Provisional |
24-183 |
1.26e-28 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183571 [Multi-domain] Cd Length: 173 Bit Score: 106.49 E-value: 1.26e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 24 YVDQLYAAALRMSRNSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYINLYRKRQREP-------QQSQGET 96
Cdd:PRK12522 12 YKQQIYSLCYKLAKTKEDAEDIFQETWIKVFSSRHQLSYVENYKKWITTICVRTFYDFYRKKKRWKdrildlfHKEDGGE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 97 VEdwqlaqagEHDAVGLRSAEVEALSAlpnTEVREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRGR 176
Cdd:PRK12522 92 IE--------FADDVNISEEFIQKVEA---EMIREVIQLLNEKYKTVLVLYYYEQYSYKEMSEILNIPIGTVKYRLNYAK 160
|
....*..
gi 896410632 177 RILREKL 183
Cdd:PRK12522 161 KQMREHL 167
|
|
| PRK09638 |
PRK09638 |
RNA polymerase sigma factor SigY; Reviewed |
23-183 |
9.80e-28 |
|
RNA polymerase sigma factor SigY; Reviewed
Pssm-ID: 182010 [Multi-domain] Cd Length: 176 Bit Score: 104.33 E-value: 9.80e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 23 QYVDQLYAAALRMSRNSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYINLYRKRQREPQQSQGET-----V 97
Cdd:PRK09638 26 QHYSFLYKYLLKLTLDPDLAEDLVQETMLKAIENLSSFQGRSKFSTWLISIASRLYKDHLRKQKREKLRLQRAKeetlrK 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 98 EDWQLAQAGEHdavglrsaevealsalpNTEVREALNELSEDFRMVV----YYsdveGFAYKDIAEILDIPLGTVMSRLH 173
Cdd:PRK09638 106 EKWEAAIKGAE-----------------WSEMLDALSKLDPEFRAPVilkhYY----GYTYEEIAKMLNIPEGTVKSRVH 164
|
170
....*....|
gi 896410632 174 RGRRILREKL 183
Cdd:PRK09638 165 HGIKQLRKEW 174
|
|
| PRK12547 |
PRK12547 |
RNA polymerase sigma factor; Provisional |
17-183 |
1.61e-27 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 139056 [Multi-domain] Cd Length: 164 Bit Score: 103.42 E-value: 1.61e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 17 FTADAMQYVDQLYAAALRMSRNSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYINLYRKRQREPQQSQGET 96
Cdd:PRK12547 8 FKQELLLALPALRAFAVSLSSKHDKAEDLVQDTLMKAWAKQDSFEMGTNLKAWLFTILRNEFYSQMRKRGREVQDSDGVF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 97 VEDWQLAQAgEHDAVGLRsaevealsalpntEVREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRGR 176
Cdd:PRK12547 88 TARVAVHPA-QYGSLDLQ-------------DFKKALNLLSADQREAIILIGASGFSYEDAAAICGCAVGTIKSRVSRAR 153
|
....*..
gi 896410632 177 RILREKL 183
Cdd:PRK12547 154 NRLQELL 160
|
|
| PRK12511 |
PRK12511 |
RNA polymerase sigma factor; Provisional |
29-194 |
8.09e-26 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237123 [Multi-domain] Cd Length: 182 Bit Score: 99.47 E-value: 8.09e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 29 YAAALrmSRNSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYINLYRKRQREPQQSQGETVEDWQLAQAGEH 108
Cdd:PRK12511 20 YARSL--TRDSAEAEDLVHDALVRALERRASFRSGGNLRTWLMSILHNAFIDELRRRRVEARRADELAVLADASLPAAQE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 109 DAVGLrsaevealsalpnTEVREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRGRRILReklldyAR 188
Cdd:PRK12511 98 HAVRL-------------AQIRDAFFDLPEEQRAALHLVAIEGLSYQEAAAVLGIPIGTLMSRIGRARAALR------AF 158
|
....*.
gi 896410632 189 ENGLRP 194
Cdd:PRK12511 159 EEGTGP 164
|
|
| PRK09637 |
PRK09637 |
RNA polymerase sigma factor SigZ; Provisional |
27-185 |
1.41e-25 |
|
RNA polymerase sigma factor SigZ; Provisional
Pssm-ID: 236601 [Multi-domain] Cd Length: 181 Bit Score: 98.90 E-value: 1.41e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 27 QLYAAALR---MSR--NSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYINLYRKRQREpqqsqgETVEDWQ 101
Cdd:PRK09637 8 SEYKAQLKaflHSRvsNEADVDDLLQEVLIKTHSNLHSLKDGSSIKSWLYQIANNTIIDFYRKKNRS------EELPDDL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 102 LAQAGEHDavglRSAEVEALSALPNTevreaLNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRGRRILRE 181
Cdd:PRK09637 82 LFEDEERE----ENAKKELAPCLRPF-----IDALPEKYAEALRLTELEGLSQKEIAEKLGLSLSGAKSRVQRGRVKLKE 152
|
....
gi 896410632 182 KLLD 185
Cdd:PRK09637 153 LLEG 156
|
|
| PRK12533 |
PRK12533 |
RNA polymerase sigma factor; Provisional |
14-179 |
2.98e-25 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237129 [Multi-domain] Cd Length: 216 Bit Score: 99.03 E-value: 2.98e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 14 RERFTADAMQYVDQLYAAALRMSRNSADAEDLVQETYMKAFASYHQFtEGTNLKAWLYRILTNTYINLYRKRQREPQQS- 92
Cdd:PRK12533 17 GERFRQLVLPHLDAAYNLARWLCGNASDADDVVQEACMRALRFFDSF-RGDNARPWLLAIVRHTWYSEWRRRANAHEVAa 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 93 -----QGETVEDWQLAqAGEHDAVGLRSAEVEAlsalpnteVREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGT 167
Cdd:PRK12533 96 pdtldDADSLDDWQPA-GEDPLALLLRAEDVRL--------VNAALAKLPVEYREVLVLRELEDMSYREIAAIADVPVGT 166
|
170
....*....|..
gi 896410632 168 VMSRLHRGRRIL 179
Cdd:PRK12533 167 VMSRLARARRRL 178
|
|
| SigM_subfam |
TIGR02950 |
RNA polymerase sigma factor, SigM family; This family of RNA polymerase sigma factors is a ... |
23-183 |
6.79e-25 |
|
RNA polymerase sigma factor, SigM family; This family of RNA polymerase sigma factors is a member of the Sigma-70 subfamily (TIGR02937) and is restricted to certain lineages of the order Bacillales. This family encompasses at least two distinct sigma factors as two proteins are found in each of B. anthracis, B. subtilis subsp. subtilis str. 168, and B. lichiniformis (although these are not apparently the same two in each). One of these is designated as SigM in B. subtilis (Swiss_Prot:
Pssm-ID: 274361 [Multi-domain] Cd Length: 154 Bit Score: 96.37 E-value: 6.79e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 23 QYVDQLYAAALRMSRNSADAEDLVQETYMKAFASYHQFtEGTNLKAWLYRILTNTYINLYRKRQREpqqsqgETVEDWQL 102
Cdd:TIGR02950 3 EYMHDVFRYLYRLTKDKHLAEDLLQETFLKAYIHLHSF-KDSSIKPWLFRIARNAFIDWYRKDKKI------QTIDDDAI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 103 AQAgEHDAVGlrSAEVEALSALPNTEVREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRGRRILREK 182
Cdd:TIGR02950 76 GDL-EQHPVE--SPEHHLLIKIEQEEITHHLSRLPENYRTVLILREFKEFSYKEIAELLNLSLAKVKSNLFRARKELKKL 152
|
.
gi 896410632 183 L 183
Cdd:TIGR02950 153 L 153
|
|
| PRK12516 |
PRK12516 |
RNA polymerase sigma factor; Provisional |
6-183 |
2.64e-24 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183568 [Multi-domain] Cd Length: 187 Bit Score: 95.80 E-value: 2.64e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 6 TAADTRELRERFTADAMQYVDQLYAAALRMSRNSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYINLYRKR 85
Cdd:PRK12516 1 TTGPSVEGTPPFKRELLAALPSLRAFAVSLIGRHDRADDLVQDTIMKAWAKQDHFEVGTNMKAWLFTILRNEFYSQMRKR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 86 QREPQQSQGETVEdwQLAqagehdavglrsAEVEALSALPNTEVREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPL 165
Cdd:PRK12516 81 GREVQDTDGMFTE--QLA------------VHPSQYGTLDLQDFRAALDQLPDDQREAIILVGASGFAYEEAAEICGCAV 146
|
170
....*....|....*...
gi 896410632 166 GTVMSRLHRGRRILREKL 183
Cdd:PRK12516 147 GTIKSRVNRARQRLQEIL 164
|
|
| SigZ |
TIGR02959 |
RNA polymerase sigma factor, SigZ family; This family of RNA polymerase sigma factors is a ... |
23-185 |
1.88e-23 |
|
RNA polymerase sigma factor, SigZ family; This family of RNA polymerase sigma factors is a member of the Sigma-70 subfamily (TIGR02937). One of these is designated as SigZ in B. subtilis (Swiss_Prot: SIGZ_BACSU). Interestingly, this group has a very sporatic distribution, B. subtilis, for instance, being the only sequenced strain of Bacilli with a member. Dechloromonas aromatica RCB appears to have two of these sigma factors. A member appears on a plasmid found in Photobacterium profundum SS9 and Vibrio fischeri ES114 (where a second one is chromosomally encoded).
Pssm-ID: 132004 [Multi-domain] Cd Length: 170 Bit Score: 92.81 E-value: 1.88e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 23 QYVDQLYAAALRMSRNSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYINLYRKRQREpqqsqgETVEDWQL 102
Cdd:TIGR02959 3 EFRSELKAFIKSRVSDASDVEDLLQEVFIKIHRNLPSLKDGQKIQSWLYQIARNTIIDFYRSKSRS------VELPESLL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 103 AQAGEHDavglRSAEVEALSALPNTevreaLNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRGRRILREK 182
Cdd:TIGR02959 77 AADSARE----ETFVKELSQCIPPM-----IKELPDEYREAIRLTELEGLSQQEIAEKLGLSLSGAKSRVQRGRKKLKEL 147
|
...
gi 896410632 183 LLD 185
Cdd:TIGR02959 148 LET 150
|
|
| PRK12540 |
PRK12540 |
RNA polymerase sigma factor; Provisional |
10-183 |
4.44e-23 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183579 [Multi-domain] Cd Length: 182 Bit Score: 92.33 E-value: 4.44e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 10 TRELRErftaDAMQYVDQLYAAALRMSRNSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYINLYRKRQREP 89
Cdd:PRK12540 4 TDSLRD----DILAAVPSLRAFAISLSGNGDRADDLVQETLLRALANIDSFQPGSNLPAWLFTILRNLFRSDYRKRRREV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 90 QQSQGETvedwqlaqagehdAVGLRSAEVEAlSALPNTEVREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVM 169
Cdd:PRK12540 80 EDADGSY-------------AKTLKSQPGQN-AHLEFEEFRAALDKLPQDQREALILVGASGFSYEDAAAICGCAVGTIK 145
|
170
....*....|....
gi 896410632 170 SRLHRGRRILREKL 183
Cdd:PRK12540 146 SRVNRARSKLSALL 159
|
|
| PRK11922 |
PRK11922 |
RNA polymerase sigma factor; Provisional |
28-183 |
7.22e-23 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237024 [Multi-domain] Cd Length: 231 Bit Score: 93.11 E-value: 7.22e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 28 LYAAALRMSRNSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNtyINLYRKRQREPQQSQGETVEDwqlAQAGE 107
Cdd:PRK11922 43 LYRTARAILRNDAEAEDVVQEAYLRAFRALGTFRGDASLSTWLSRIVLN--EALGRLRRRRRLVNLAEMVMA---STIAG 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 108 HDAVGLRSAEVEALSALPNTEVRE----ALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRGRRILREKL 183
Cdd:PRK11922 118 GERTPLADPAEDPERAAARREIRAllerAIDALPDAFRAVFVLRVVEELSVEETAQALGLPEETVKTRLHRARRLLRESL 197
|
|
| PRK12518 |
PRK12518 |
RNA polymerase sigma factor; Provisional |
43-183 |
2.16e-21 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237124 [Multi-domain] Cd Length: 175 Bit Score: 87.47 E-value: 2.16e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 43 EDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYINLYRKRQREPQQSQGETVEDWQLAQAGEHDavgLRSAEVEALs 122
Cdd:PRK12518 38 DDLVQEVFLRVWKGLPKLRNPAYFSTWLYRITWNVATDARRQFAQRPSRIQDDSLNDQPSRPSDTPD---LMQLHYQDL- 113
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 896410632 123 alpnteVREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRGRRILREKL 183
Cdd:PRK12518 114 ------VQQGLQTLSLEHRAVLVLHDLEDLPQKEIAEILNIPVGTVKSRLFYARRQLRKFL 168
|
|
| Sig70_bacteroi1 |
TIGR02985 |
RNA polymerase sigma-70 factor, Bacteroides expansion family 1; This group of sigma factors ... |
15-183 |
2.23e-21 |
|
RNA polymerase sigma-70 factor, Bacteroides expansion family 1; This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.
Pssm-ID: 274376 [Multi-domain] Cd Length: 161 Bit Score: 87.23 E-value: 2.23e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 15 ERFTADAMQYVDQLYAAALRMSRNSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYINLYRKRQREpQQSQG 94
Cdd:TIGR02985 1 EAFEQLYRRYYPKLCAFARRYVKDEEDAEDIVQDVFLKLWENRETLEISESIKAYLFTIVKNRCLNYLRHKQVE-EKYQE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 95 ETVEdwqLAQAGEHDAVGLRSAEVEALsalpNTEVREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHR 174
Cdd:TIGR02985 80 ELAE---IEERELSEADPEEELEAKEL----EEIIEEAIEKLPEQCREIFILSRFEGLSNKEIAEELGISVKTVEYHITK 152
|
....*....
gi 896410632 175 GRRILREKL 183
Cdd:TIGR02985 153 ALKFLRKEL 161
|
|
| algU |
PRK11923 |
RNA polymerase sigma factor AlgU; Provisional |
22-176 |
8.77e-20 |
|
RNA polymerase sigma factor AlgU; Provisional
Pssm-ID: 171347 [Multi-domain] Cd Length: 193 Bit Score: 83.70 E-value: 8.77e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 22 MQYVDQLYAAALRMSRNSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYINLYRKRQREPQQSQGEtVEDWQ 101
Cdd:PRK11923 27 LKYQHKILGLIVRFVHDTAEAQDVAQEAFIKAYRALGNFRGDSAFYTWLYRIAINTAKNHLVSRGRRPPDSDVS-SEDAE 105
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 896410632 102 LAQaGEHDAVGLRSAEVEALSALPNTEVREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRGR 176
Cdd:PRK11923 106 FYD-GDHALKDIESPERALLRDEIEGTVHRTIQQLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFRAR 179
|
|
| PRK09645 |
PRK09645 |
ECF RNA polymerase sigma factor SigL; |
3-188 |
1.63e-19 |
|
ECF RNA polymerase sigma factor SigL;
Pssm-ID: 236605 [Multi-domain] Cd Length: 173 Bit Score: 82.43 E-value: 1.63e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 3 GTNTAADTRELRERFTADAmqyvDQLYAAALRMSRNSADAEDLVQETYMKAFASYHQFT-EGTNLKAWLYRILTNTYINL 81
Cdd:PRK09645 1 SGMATAEAALMRALYDEHA----APLWRYALRLTGDRARAEDVVQETLLRAWQHPEVLAdTGRSARAWLFTVARNLVIDE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 82 YRKRQREPQQSQGETvedwqlaqagehDAVGLRSAEVEALSALPNTEVREALNELSEDFRMVVYYSDVEGFAYKDIAEIL 161
Cdd:PRK09645 77 RRSARARPVEGGDDV------------LGVPEQSAPDEVDRALDRLLVADALAQLSPEHRAVLVRSYYRGWSTAQIAADL 144
|
170 180
....*....|....*....|....*..
gi 896410632 162 DIPLGTVMSRLHRGRRILREKLLDYAR 188
Cdd:PRK09645 145 GIPEGTVKSRLHYALRALRLALQERGV 171
|
|
| PRK09639 |
PRK09639 |
RNA polymerase sigma factor SigX; Provisional |
23-181 |
5.84e-19 |
|
RNA polymerase sigma factor SigX; Provisional
Pssm-ID: 236602 [Multi-domain] Cd Length: 166 Bit Score: 80.76 E-value: 5.84e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 23 QYVDQLYAAALRMSRNSADAEDLVQETYMKAFASyhQFTEGTNLKAWLYRILTNTYINLYRKRQRepQQSQGETVEDW-Q 101
Cdd:PRK09639 11 QYYPDVVQQIFYIVKDRTQAEDLAQEVFLRLYRS--DFKGIENEKGWLIKSARNVAYNYLRSEKR--RRARILGEFQWqE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 102 LAQAGEHDAVGLRSAEVealsalpnTEVREALNELSEDFRMVVY--YSdveGFAYKDIAEILDIPLGTVMSRLHRGRRIL 179
Cdd:PRK09639 87 VDNEPSPEEIWIRKEEI--------TKVQEVLAKMTERDRTVLLlrFS---GYSYKEIAEALGIKESSVGTTLARAKKKF 155
|
..
gi 896410632 180 RE 181
Cdd:PRK09639 156 RK 157
|
|
| PRK09643 |
PRK09643 |
RNA polymerase sigma factor SigM; Reviewed |
26-191 |
2.02e-18 |
|
RNA polymerase sigma factor SigM; Reviewed
Pssm-ID: 236604 [Multi-domain] Cd Length: 192 Bit Score: 80.14 E-value: 2.02e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 26 DQLYAAALRMSRNSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYINLYRKRQREPQQSQGETVEDWQLAQA 105
Cdd:PRK09643 38 RRLWAVARRTSGTREDAADALQDAMLSAHRAAGSFRGDAAVSSWLHRIVVNACLDRLRRAKARPTVPLDDVYPVAQLERD 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 106 gehdavglRSAEVEALsalpnTEVREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRGRRILREkLLD 185
Cdd:PRK09643 118 --------PTARVETA-----LAVQRALMRLPVEQRAALVAVDMQGYSVADAARMLGVAEGTVKSRCARGRARLAE-LLG 183
|
....*.
gi 896410632 186 YARENG 191
Cdd:PRK09643 184 YLRAGG 189
|
|
| PRK12538 |
PRK12538 |
RNA polymerase sigma factor; Provisional |
4-189 |
3.04e-17 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 139048 [Multi-domain] Cd Length: 233 Bit Score: 77.97 E-value: 3.04e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 4 TNTAADTRELRERftadamqYVDQLYAAALRMSRNSADAEDLVQETYMKAFASYHQFTEG-TNLKAWLYRILTNTYINLY 82
Cdd:PRK12538 59 TDDEAAFRLLVER-------HIDRAYAIALRIVGNRADAEDVVQDTMLKVWTHRGRWQHGrAKFSTWLYRVVSNRCIDLR 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 83 RKrqrePQQSQGETVEDwqlAQAGEHDAVglRSAEVEALSALpnteVREALNELSEDFRMVVYYSDVEGFAYKDIAEILD 162
Cdd:PRK12538 132 RK----PRTENVDAVPE---VADGKPDAV--SVIERNELSDL----LEAAMQRLPEQQRIAVILSYHENMSNGEIAEVMD 198
|
170 180
....*....|....*....|....*..
gi 896410632 163 IPLGTVMSRLHRGRRILREKLLDYARE 189
Cdd:PRK12538 199 TTVAAVESLLKRGRQQLRDLLRRHERD 225
|
|
| SigE-fam_strep |
TIGR02983 |
RNA polymerase sigma-70 factor, sigma-E family; This group of similar sigma-70 factors ... |
14-183 |
4.44e-17 |
|
RNA polymerase sigma-70 factor, sigma-E family; This group of similar sigma-70 factors includes the sigE factor from Streptomyces coelicolor. The family appears to include a paralagous expansion in the Streptomycetes lineage, while related Actinomycetales have at most two representatives.
Pssm-ID: 132028 [Multi-domain] Cd Length: 162 Bit Score: 75.89 E-value: 4.44e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 14 RERFTADAMQYVDQLYAAALRMSRNSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYINLYRKRQREpqqsq 93
Cdd:TIGR02983 5 EEEFTAFVAARYPRLLRTAYLLTGDPHEAEDLVQEALVRTYVRWDRIRDPDAPDAYVRRVLVNLARSRWRRRRLL----- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 94 getvedwQLAQAGEHDAVGLRSAEVEALSAlpntEVREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLH 173
Cdd:TIGR02983 80 -------ELPTRELPDAAAPDPAPDVALRA----ALARALRRLPARQRAVVVLRYYEDLSEAQVAEALGISVGTVKSRLS 148
|
170
....*....|
gi 896410632 174 RGRRILREKL 183
Cdd:TIGR02983 149 RALARLRELL 158
|
|
| PRK08241 |
PRK08241 |
RNA polymerase subunit sigma-70; |
1-181 |
4.57e-17 |
|
RNA polymerase subunit sigma-70;
Pssm-ID: 236196 [Multi-domain] Cd Length: 339 Bit Score: 78.83 E-value: 4.57e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 1 MAGTNTAADTRELRERFTADAMQYVDQLYAAALRMSRNSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYIN 80
Cdd:PRK08241 5 AAAALLARAAAGDRDAFAALVEPHRRELLAHCYRMLGSVHDAEDAVQETLLRAWRGYDRFEGRSSLRTWLYRIATNVCLD 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 81 LYRKRQREPQQSqGETVEDWQLAQAGE--HDAVGLR---SAEVEALSALPN--TEVRE--------ALNELSEDFRMVVY 145
Cdd:PRK08241 85 ALEGRARRPLPT-DLGAPAADPVDELVerPEVPWLEpypDALLDPAAADPAarVVAREsvrlafvaALQHLPPRQRAVLI 163
|
170 180 190
....*....|....*....|....*....|....*.
gi 896410632 146 YSDVEGFAYKDIAEILDIPLGTVMSRLHRGRRILRE 181
Cdd:PRK08241 164 LRDVLGWSAAEVAELLDTSVAAVNSALQRARATLAE 199
|
|
| PRK12519 |
PRK12519 |
RNA polymerase sigma factor; Provisional |
29-186 |
6.43e-17 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237125 [Multi-domain] Cd Length: 194 Bit Score: 76.25 E-value: 6.43e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 29 YAAALRMSRNSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYrILTNTYInLYRKRQRepqQSQGETVEDWQLAQAGEH 108
Cdd:PRK12519 43 YGLALKILGNSQEAEDLTQEIFLSLWRKSSYDPKRGSLSSYLL-TLTRSRA-IDRLRSR---RSRQRLLERWQQELLGEA 117
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 896410632 109 DAVG-LRSAEVEALSAlpntEVREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRGRRILREKLLDY 186
Cdd:PRK12519 118 SEDTpLEQASLAERSQ----RVQTALAQLPESQRQVLELAYYEGLSQSEIAKRLGIPLGTVKARARQGLLKLRELLQDL 192
|
|
| PRK12541 |
PRK12541 |
RNA polymerase sigma factor; Provisional |
23-180 |
8.26e-17 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183580 [Multi-domain] Cd Length: 161 Bit Score: 74.97 E-value: 8.26e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 23 QYVDQLYAAALRMSRNSADAEDLVQETYMKAFAsYHQFTEGTNLKAWLYRILTNTYINLYRKRQREPQQsqgeTVEDWQL 102
Cdd:PRK12541 13 EHMQDLFRYLLSLTGDSHFAEDLMQETFYRMLV-HIDYYKGEEIRPWLFTIAYNAFIDWYRKEKKYKTT----TIEEFHL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 103 AQAGEHDAVGLRSAEV----EALSALPNTEvrealnelsedfRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRGRRI 178
Cdd:PRK12541 88 PNVPSTEHEYFIKHEIaswlDSLSSLPLER------------RNVLLLRDYYGFSYKEIAEMTGLSLAKVKIELHRGRKE 155
|
..
gi 896410632 179 LR 180
Cdd:PRK12541 156 TK 157
|
|
| PRK12543 |
PRK12543 |
RNA polymerase sigma factor; Provisional |
28-182 |
9.03e-16 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183582 [Multi-domain] Cd Length: 179 Bit Score: 72.84 E-value: 9.03e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 28 LYAAALRMSRNSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYINLYRKRQR-----EPQQSQGETVEDWQl 102
Cdd:PRK12543 20 VYKTVHFLVEDKQDVDDVVNEIYIQLWESLRKYDSNRPFRFWLIGLVIKQIHSWRRKRWRrfrifEKAEEQRKPVSIDF- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 103 aqagehdavglrsaEVEALSALPNTEVREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRGRRILREK 182
Cdd:PRK12543 99 --------------SEDVLSKESNQELIELIHKLPYKLRQVIILRYLHDYSQEEIAQLLQIPIGTVKSRIHAALKKLRQK 164
|
|
| PRK09644 |
PRK09644 |
RNA polymerase sigma factor SigM; Provisional |
24-181 |
9.59e-16 |
|
RNA polymerase sigma factor SigM; Provisional
Pssm-ID: 170033 [Multi-domain] Cd Length: 165 Bit Score: 72.22 E-value: 9.59e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 24 YVDQLYAAALRMSRNSADAEDLVQETYMKAFASYHQFtEGTNLKAWLYRILTNTYINLYRKRQREPQQSQGETveDWQLA 103
Cdd:PRK09644 10 YINDVYRYLFSLTKSHHAAEDLLQETFYRAYIYLEDY-DNQKVKPWLFKVAYHTFIDFVRKEKKVSFVGTDEI--EAIQA 86
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 896410632 104 QAGEHDAVGLRSAEVealsalpnteVREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRGRRILRE 181
Cdd:PRK09644 87 ESTEEYVVAKNSYEK----------LIQIIHTLPVIEAQAILLCDVHELTYEEAASVLDLKLNTYKSHLFRGRKRLKA 154
|
|
| Sigma70_r2 |
pfam04542 |
Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. ... |
22-88 |
2.35e-15 |
|
Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. All members of this class of sigma-factor contain region 2. The high conservation is due to region 2 containing both the -10 promoter recognition helix and the primary core RNA polymerase binding determinant. The core binding helix, interacts with the clamp domain of the largest polymerase subunit, beta prime. The aromatic residues of the recognition helix, found at the C-terminus of this domain are though to mediate strand separation, thereby allowing transcription initiation.
Pssm-ID: 427998 [Multi-domain] Cd Length: 71 Bit Score: 68.38 E-value: 2.35e-15
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 896410632 22 MQYVDQLYAAALRMSRNSADAEDLVQETYMKAFASYHQF--TEGTNLKAWLYRILTNTYINLYRKRQRE 88
Cdd:pfam04542 3 ERYLPLVYSLARRYLGDGADAEDLVQEGFLGLWRAIERFdpERGVSFSTWLYTIIRNAIIDYLRKQRRT 71
|
|
| PRK09415 |
PRK09415 |
RNA polymerase factor sigma C; Reviewed |
37-183 |
4.34e-15 |
|
RNA polymerase factor sigma C; Reviewed
Pssm-ID: 181835 [Multi-domain] Cd Length: 179 Bit Score: 70.93 E-value: 4.34e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 37 RNSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNT---------YINLYRKRQREPQ-QSQGETVEDWQLAQAG 106
Cdd:PRK09415 38 KNKEVAEDLTQEIFVKCYKSLHTYKGKSSLKTWLYRIAINHckdylkswhNKKVIVTEDIFTYmESQKESVEEEVIQNAE 117
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 896410632 107 EHdavglrsaevealsalpntEVREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRGRRILREKL 183
Cdd:PRK09415 118 DE-------------------RLASAVMSLPIKYREVIYLFYYEELSIKEIAEVTGVNENTVKTRLKKAKELLKKGL 175
|
|
| SigX5 |
TIGR02960 |
RNA polymerase sigma-70 factor, TIGR02960 family; This group of sigma factors are members of ... |
17-183 |
6.14e-15 |
|
RNA polymerase sigma-70 factor, TIGR02960 family; This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Pssm-ID: 132005 [Multi-domain] Cd Length: 324 Bit Score: 72.97 E-value: 6.14e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 17 FTADAMQYVDQLYAAALRMSRNSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYINLYRKRQREPQQSqgET 96
Cdd:TIGR02960 7 FTALAEPHRRELLAHCYRMLGSLHEAEDLVQETLLRAWRARDRFEGRSSVRTWLYRIATNACLDALEARQRRPRPV--GL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 97 VEDWQLAQAgehdAVGLRsAEVEALSALPNTEV----------------RE--------ALNELSEDFRMVVYYSDVEGF 152
Cdd:TIGR02960 85 GAPSADGTA----AASEA-AEVTWLEPLPDLTLdlddpaaadpsvaagsREsvrlafvaAIQYLPPRQRAVLLLRDVLGW 159
|
170 180 190
....*....|....*....|....*....|.
gi 896410632 153 AYKDIAEILDIPLGTVMSRLHRGRRILREKL 183
Cdd:TIGR02960 160 RAAETAELLGTSTASVNSALQRARATLDEVG 190
|
|
| Sigma70_r4 |
cd06171 |
Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in ... |
126-180 |
3.08e-13 |
|
Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplasmic stress and pathogenesis. Ec sigmaE SR4 also contacts the -35 element, but recognizes a different consensus (a 7-base-pair GGAACTT). Plant SFs recognize sigma70 type promoters and direct transcription of the major plastid RNA polymerase, plastid-encoded RNA polymerase (PEP).
Pssm-ID: 100119 [Multi-domain] Cd Length: 55 Bit Score: 62.51 E-value: 3.08e-13
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 896410632 126 NTEVREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRGRRILR 180
Cdd:cd06171 1 RERLEEALDKLPEREREVILLRFGEGLSYEEIAEILGISRSTVRQRLHRALKKLR 55
|
|
| Sigma70_r4_2 |
pfam08281 |
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 ... |
128-179 |
1.54e-12 |
|
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif.
Pssm-ID: 400535 [Multi-domain] Cd Length: 54 Bit Score: 60.55 E-value: 1.54e-12
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 896410632 128 EVREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRGRRIL 179
Cdd:pfam08281 3 ALLRALEELPPRQREVFLLRYLEGLSYAEIAELLGISEGTVKSRLSRARKKL 54
|
|
| PRK05602 |
PRK05602 |
RNA polymerase sigma factor; Reviewed |
3-185 |
2.00e-12 |
|
RNA polymerase sigma factor; Reviewed
Pssm-ID: 235530 [Multi-domain] Cd Length: 186 Bit Score: 63.90 E-value: 2.00e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 3 GTNTAADTRELRERftadamqYVDQLYAAALRMSRNSADAEDLVQETYMKAFASYHQFTEG-TNLKAWLYRILTNTYINL 81
Cdd:PRK05602 15 AAGDPAAFRVLVAR-------KLPRLLALATRMLGDPAEAEDVAQETFLRIWKQAPSWRPGeARFDTWLHRVVLNLCYDR 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 82 YRKRQREPQQSQGETVEDWQLAQAGEHDAVglRSAEVE-ALSALPNTEvREALnelsedfrMVVYYsdvEGFAYKDIAEI 160
Cdd:PRK05602 88 LRRRREVPVEDAPDVPDPAPGPDAGLEARQ--RARRVEqALAALPERQ-REAI--------VLQYY---QGLSNIEAAAV 153
|
170 180
....*....|....*....|....*
gi 896410632 161 LDIPLGTVMSRLHRGRRILREKLLD 185
Cdd:PRK05602 154 MDISVDALESLLARGRRALRAQLAD 178
|
|
| PRK12513 |
PRK12513 |
RNA polymerase sigma factor; Provisional |
28-183 |
2.44e-12 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183566 [Multi-domain] Cd Length: 194 Bit Score: 63.55 E-value: 2.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 28 LYAAALRMSRNSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYINLYRK--RQREPQQSQGETVEdwqlAQA 105
Cdd:PRK12513 39 LYRFLLRLARDRALAEDIFQETWLRVIRARAQYQPRARFRTWLYQIARNLLIDHWRRhgARQAPSLDADEQLH----ALA 114
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 896410632 106 GEHDAVglrsaEVEALSALPNTEVREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRGRRILREKL 183
Cdd:PRK12513 115 DDGAAP-----EQQLSLFRDRRRLQAALETLPDEQREVFLLREHGDLELEEIAELTGVPEETVKSRLRYALQKLRELL 187
|
|
| PRK09640 |
PRK09640 |
RNA polymerase sigma factor SigX; Reviewed |
2-187 |
3.13e-12 |
|
RNA polymerase sigma factor SigX; Reviewed
Pssm-ID: 236603 [Multi-domain] Cd Length: 188 Bit Score: 63.42 E-value: 3.13e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 2 AGTNTAADTRELRERFTadamQYVDQLYAAALRMSRNSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYINL 81
Cdd:PRK09640 17 VHVELFHVTRAYEELMR----RYQRTLFNVCARYLGNDRDADDVCQEVMLKVLYGLKNFEGKSKFKTWLYSITYNECITQ 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 82 YRKRQREPQQSQGETVEDwqlAQAGEHDavglRSAEVEALSALPNTEVReaLNELSEDFRMVVYYSDVEgfaYKDIAEIL 161
Cdd:PRK09640 93 YRKERRKRRLMDALSLDP---LEEASEE----KAPKPEERGGLDRWLVH--VNPIDREILVLRFVAELE---FQEIADIM 160
|
170 180
....*....|....*....|....*.
gi 896410632 162 DIPLGTVMSRLHRGRRILREKLLDYA 187
Cdd:PRK09640 161 HMGLSATKMRYKRALDKLREKFAGLA 186
|
|
| PRK12514 |
PRK12514 |
RNA polymerase sigma factor; Provisional |
27-183 |
4.63e-12 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 105710 [Multi-domain] Cd Length: 179 Bit Score: 62.53 E-value: 4.63e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 27 QLYAAALRMSRNSADAEDLVQETYMKAFASYHQF-TEGTNLKAWLYRILTNTYINLYRKRQRepqqsqgeTVEDWQLAqa 105
Cdd:PRK12514 31 KLFGICLRVLKDRSEAEEALQDVYVKIWTKADRFaVSGLSPMTWLITIARNHAIDRLRARKA--------VAVDIDEA-- 100
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 896410632 106 geHDAV-GLRSAEVEALSALPNTEVREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRGRRILREKL 183
Cdd:PRK12514 101 --HDLAdPSPGPEAEVIAGDEGQRIDACLEELEKDRAAAVRRAYLEGLSYKELAERHDVPLNTMRTWLRRSLLKLRECL 177
|
|
| PRK13919 |
PRK13919 |
putative RNA polymerase sigma E protein; Provisional |
23-185 |
9.87e-11 |
|
putative RNA polymerase sigma E protein; Provisional
Pssm-ID: 184395 [Multi-domain] Cd Length: 186 Bit Score: 59.16 E-value: 9.87e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 23 QYVDQLYAAALRMSRNSADAEDLVQETYMKAFASYHQFT-EGTNLKAWLYRILTNTYINLYRKRQREPQQSQGETVEDwq 101
Cdd:PRK13919 31 RYAGAFLALARRMGLDGAAAEDVVQEVFIRVWKKAKEFDpRRGSARAWLLALAHHAAVDHVRRRAARPQPLEPDEREP-- 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 102 laqagehDAVGLRSAEVEALSALPNTEVREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRGRRILRE 181
Cdd:PRK13919 109 -------EAFDLPGPGLDEEGHLDRTRLGRALKALSPEERRVIEVLYYQGYTHREAAQLLGLPLGTLKTRARRALSRLKE 181
|
....
gi 896410632 182 KLLD 185
Cdd:PRK13919 182 VLRE 185
|
|
| Sig-70_gvs1 |
TIGR02989 |
RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family; This group of sigma ... |
15-181 |
5.05e-10 |
|
RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family; This group of sigma factors are members of the sigma-70 family (TIGR02937) and are abundantly found in the species Rhodopirellula baltica (11), and Verrucomicrobium spinosum (16) and to a lesser extent in Gemmata obscuriglobus (2).
Pssm-ID: 274379 [Multi-domain] Cd Length: 159 Bit Score: 56.56 E-value: 5.05e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 15 ERFTADAMQYVDQLYAAALRMSRNSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYINLYRKRQREPQQSQG 94
Cdd:TIGR02989 1 KAFVRLLTRHERALRAFVRSLVADRDDVDDVLQETFVVAWRKFDQFDPGTNFVAWARGIARNKVLNYRRKLGRDRLVFDD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 95 ETVEdwQLAQAGEHDAVGLRSAEVEALsalpntevREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHR 174
Cdd:TIGR02989 81 DLLE--ALAAEAEPTEAERLSDDRQAL--------EGCLEKLPERQRELLDLRYQRGQKATALAEQTGRTVNAVYKALQR 150
|
....*..
gi 896410632 175 GRRILRE 181
Cdd:TIGR02989 151 IRVSLRE 157
|
|
| Sig70_famx1 |
TIGR02943 |
RNA polymerase sigma-70 factor, TIGR02943 family; This group of sigma factors are members of ... |
23-183 |
5.08e-10 |
|
RNA polymerase sigma-70 factor, TIGR02943 family; This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Pssm-ID: 274359 [Multi-domain] Cd Length: 188 Bit Score: 57.08 E-value: 5.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 23 QYVDQLYAAALRMS----RNSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYINLYRKRQREPQQSQ-GETV 97
Cdd:TIGR02943 6 QELEQLRRDLLRFArlqlRDRDLAEDAVQETLLAALSHRDSFAGRSALKTWLFAILKNKIIDALRAKGREVKVSDlDDEL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 98 EDWQL----AQAGEHDAVGLRSAEVEALSALPNTE---VREA-LNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVM 169
Cdd:TIGR02943 86 DDEAFnalfTQNGHWAQHGQPQHWNTPEKQLENKEfweVFEAcLYHLPEQTARVFMMREVLGFESDEICQELEISTSNCH 165
|
170
....*....|....
gi 896410632 170 SRLHRGRRILREKL 183
Cdd:TIGR02943 166 VLLYRARLSLRACL 179
|
|
| PRK12517 |
PRK12517 |
RNA polymerase sigma factor; Provisional |
28-183 |
6.16e-10 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183569 [Multi-domain] Cd Length: 188 Bit Score: 57.00 E-value: 6.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 28 LYAAALRMSRNSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYINLYRKRQREPQQSQGETVEDwQLAQAGE 107
Cdd:PRK12517 36 IYRYAYWLCKDKHIAEDLVQETFLRAWRSLDSLKDEKAAKAWLITILRRENARRFERKQFDLVDIEDDSIED-DASHSSE 114
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 896410632 108 HDavglrsaevealsaLPNTEVREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRGRRILREKL 183
Cdd:PRK12517 115 EE--------------MEQEWLRRQIAKLDPEYREPLLLQVIGGFSGEEIAEILDLNKNTVMTRLFRARNQLKEAL 176
|
|
| PRK12532 |
PRK12532 |
RNA polymerase sigma factor; Provisional |
26-183 |
1.08e-09 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 171564 [Multi-domain] Cd Length: 195 Bit Score: 56.48 E-value: 1.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 26 DQLYAAALRMSRNSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYINLYRKRQREPQQSQGETVE------D 99
Cdd:PRK12532 17 LLLHFARLQLPDHPDLAEDLVQETLLSAYSAGDSFQGRALVNSWLFAILKNKIIDALRQIGRQRKVFTLLDDElldeafE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 100 WQLAQAGEHDAVGLRSAEVEALSALPNTEVRE----ALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRG 175
Cdd:PRK12532 97 SHFSQNGHWTPEGQPQHWNTPEKSLNNNEFQKilqsCLYNLPENTARVFTLKEILGFSSDEIQQMCGISTSNYHTIMHRA 176
|
....*...
gi 896410632 176 RRILREKL 183
Cdd:PRK12532 177 RESLRQCL 184
|
|
| PRK09642 |
PRK09642 |
RNA polymerase sigma factor; |
24-181 |
1.78e-09 |
|
RNA polymerase sigma factor;
Pssm-ID: 170031 [Multi-domain] Cd Length: 160 Bit Score: 55.11 E-value: 1.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 24 YVDQLYAAALRMSRNSADAEDLVQETYMKAFASYHQFtEGTNLKAWLYRILTNTYINLYRKRQREPqqsqgetvEDWQLA 103
Cdd:PRK09642 4 YRHYIFQVIFSILRHEEDAKDVTQEVFVKIHASLPNY-QFRGLKTWMARIATNHAIDYKRKKAREN--------EELSLC 74
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 896410632 104 QAGEHDAVGLRSAEVEALSALPNTEVREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRGRRILRE 181
Cdd:PRK09642 75 KETEENIKSSHNIEDLLLTKEQKLLIAQKLRELPENYRDVVLAHYLEEKSYQEIALQEKIEVKTVEMKLYRARKWIKK 152
|
|
| PRK09649 |
PRK09649 |
RNA polymerase sigma factor SigC; Reviewed |
38-179 |
4.02e-09 |
|
RNA polymerase sigma factor SigC; Reviewed
Pssm-ID: 137458 [Multi-domain] Cd Length: 185 Bit Score: 54.66 E-value: 4.02e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 38 NSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYINLYRKRQREPQQSQGETVEdwQLAQAGEHdAVGLRS-A 116
Cdd:PRK09649 46 DVGSADDLTQETFLRAIGAIPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPE--HLIDGDRH-ARGFEDlV 122
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 896410632 117 EVEALSALPNTEVREALnelsedfrmvvYYSDVEGFAYKDIAEILDIPLGTVMSRLHRGRRIL 179
Cdd:PRK09649 123 EVTTMIADLTTDQREAL-----------LLTQLLGLSYADAAAVCGCPVGTIRSRVARARDAL 174
|
|
| PRK12537 |
PRK12537 |
RNA polymerase sigma factor; Provisional |
27-181 |
4.20e-09 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 171568 [Multi-domain] Cd Length: 182 Bit Score: 54.40 E-value: 4.20e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 27 QLYAAALRMSRNSADAEDLVQETYMKAFASYHQF--TEGTNlKAWLYRILTNTYINLYRKRQREPQQSQG--ETVEDWQL 102
Cdd:PRK12537 35 RLLGVARRIVRDRALAEDIVHDAFIKIWTGAASFdpARGSA-RGWIYSVTRHLALNVLRDTRREVVLDDDaeETAQTLHE 113
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 896410632 103 AQAgehdavglrsaEVEALSALpnTEVREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRGRRILRE 181
Cdd:PRK12537 114 IID-----------DFDLWANS--GKIHRCLEQLEPARRNCILHAYVDGCSHAEIAQRLGAPLGTVKAWIKRSLKALRE 179
|
|
| SigX4 |
TIGR02957 |
RNA polymerase sigma-70 factor, TIGR02957 family; This group of sigma factors are members of ... |
23-182 |
9.67e-09 |
|
RNA polymerase sigma-70 factor, TIGR02957 family; This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Pssm-ID: 132002 [Multi-domain] Cd Length: 281 Bit Score: 54.67 E-value: 9.67e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 23 QYVDQLYAAALRMSRNSADAEDLVQETymkaFASYHQFTEG--TNLKAWLYRILTNTYINLYR--KRQREpqqsqgETVE 98
Cdd:TIGR02957 5 ALRPLLFSLAYRMLGSVADAEDIVQET----FLRWQEADRAqiENPKAYLTKVVTRRCIDVLRsaRARRE------VYVG 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 99 DW-QLAQAGEHDAVGLRSAEVEALSalpnTEVREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRGRR 177
Cdd:TIGR02957 75 PWlPEPLLTTSADPAESVELAESLS----MAYLLLLERLSPLERAVFVLREVFDYPYEEIASIVGKSEANCRQLVSRARR 150
|
....*
gi 896410632 178 ILREK 182
Cdd:TIGR02957 151 HLDAR 155
|
|
| Sigma70_r4 |
pfam04545 |
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 ... |
132-181 |
1.22e-08 |
|
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.
Pssm-ID: 461347 [Multi-domain] Cd Length: 50 Bit Score: 49.73 E-value: 1.22e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 896410632 132 ALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRGRRILRE 181
Cdd:pfam04545 1 ALASLPPRERQVLVLRYGEGLTLEEIGERLGISRERVRQIEKRALRKLRK 50
|
|
| PRK12515 |
PRK12515 |
RNA polymerase sigma factor; Provisional |
29-191 |
1.47e-08 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183567 [Multi-domain] Cd Length: 189 Bit Score: 53.20 E-value: 1.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 29 YAAALRMSRNSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYINLYRKRQREP-QQSQGETVEDwqlaQAGE 107
Cdd:PRK12515 36 YRFGLRLVRDEQTAEDLVSEVFLDVWRQAGQFEGRSQVSTWLLSIARFKALSALRRRKHEEiDDEAAAAIED----GADT 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 108 HDAVGLRSAEVEALsalpntevREALNELSEDFRMV---VYYsdvEGFAYKDIAEILDIPLGTVMSRLHRGRRILREKLL 184
Cdd:PRK12515 112 PEVALQKSDTSAAL--------RACLAKLSPAHREIidlVYY---HEKSVEEVGEIVGIPESTVKTRMFYARKKLAELLK 180
|
....*..
gi 896410632 185 DYARENG 191
Cdd:PRK12515 181 AAGVERG 187
|
|
| PRK12531 |
PRK12531 |
RNA polymerase sigma factor; Provisional |
20-183 |
1.59e-08 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 105726 [Multi-domain] Cd Length: 194 Bit Score: 53.01 E-value: 1.59e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 20 DAMQYVDQLYAAALRM-----SRNSADAEDLVQETYMKAFASYHQFT-EGTNLKAWLYRILTNTYINLYRKRQREPQQSQ 93
Cdd:PRK12531 27 QAFALVFSYYAPKLKQfamkhVGNEQVAMEMVQETMSTVWQKAHLFDgQKSALSTWIYTIIRNLCFDLLRKQKGKDLHIH 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 94 GETV--EDWQlaqagEHDAVGLRSAEVEALSAlpntEVREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSR 171
Cdd:PRK12531 107 ADDIwpSDYY-----PPDLVDHYSPEQDMLKE----QVMKFLDRLPKAQRDVLQAVYLEELPHQQVAEMFDIPLGTVKSR 177
|
170
....*....|..
gi 896410632 172 LhrgrRILREKL 183
Cdd:PRK12531 178 L----RLAVEKL 185
|
|
| PRK12524 |
PRK12524 |
RNA polymerase sigma factor; Provisional |
29-183 |
1.21e-07 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183573 [Multi-domain] Cd Length: 196 Bit Score: 50.66 E-value: 1.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 29 YAAALRMSRNSADAEDLVQETYMKAFASYHQFTEG-TNLKAWLYRILTNTYINlyRKRQREPQQSQGETVEDWQLAQAGE 107
Cdd:PRK12524 40 LAVATRVLGDRAEAEDVTQEAMLRLWRIAPDWRQGeARVSTWLYRVVCNLCTD--RLRRRRRASVDLDDAPEPADAAPGA 117
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 896410632 108 HDAVgLRSAEVEALSAlpntevreALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRGRRILREKL 183
Cdd:PRK12524 118 EEAL-IEGDRMRALDA--------ALAALPERQRQAVVLRHIEGLSNPEIAEVMEIGVEAVESLTARGKRALAALL 184
|
|
| PRK12539 |
PRK12539 |
RNA polymerase sigma factor SigF; |
7-179 |
1.54e-07 |
|
RNA polymerase sigma factor SigF;
Pssm-ID: 237132 [Multi-domain] Cd Length: 184 Bit Score: 50.11 E-value: 1.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 7 AADTRELRERFTADAMQYvdqlYAAAL-RMSRNSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYINLYRKR 85
Cdd:PRK12539 20 AAAHRALLERLSGHLRAY----YKGKLaRIGRGAEEAEDLVQEALMAIHTRRHTYDPEQPLTPWVYAIARYKLIDHLRRT 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 86 QRepqqsqgeTVEDWQLAQAGE---HDAvglrSAEVEalSALpntEVREALNELSEDFRMVVYYSDVEGFAYKDIAEILD 162
Cdd:PRK12539 96 RA--------SLADVPIDDADElvaHDD----HAAVE--STL---DLGRLLARLPEKMRLAIQAVKLEGLSVAEAATRSG 158
|
170
....*....|....*..
gi 896410632 163 IPLGTVMSRLHRGRRIL 179
Cdd:PRK12539 159 MSESAVKVSVHRGLKAL 175
|
|
| PRK12512 |
PRK12512 |
RNA polymerase sigma factor; Provisional |
41-183 |
2.06e-07 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 171551 [Multi-domain] Cd Length: 184 Bit Score: 49.70 E-value: 2.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 41 DAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYINLYRKRQREPQQSQGETVEDWQLAQAGEhdavglrsaevea 120
Cdd:PRK12512 52 QAEDIVQEILLAVHLKRHTWDPGAPFAPWLFAIARNKLIDALRRRGRRVFVDIDDFAETLPAEPATE------------- 118
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 896410632 121 lsALPNTEVREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRGRRILREKL 183
Cdd:PRK12512 119 --TLPAGDVGRHLETLPPRQRDVVQSISVEGASIKETAAKLSMSEGAVRVALHRGLAALAAKF 179
|
|
| PRK12530 |
PRK12530 |
RNA polymerase sigma factor; Provisional |
37-87 |
2.44e-07 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237128 [Multi-domain] Cd Length: 189 Bit Score: 49.38 E-value: 2.44e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 896410632 37 RNSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYINLYRKRQR 87
Cdd:PRK12530 29 KDADLAEDVVQEALVSAYKNADSFKGQSALKTWIFAILKNKIIDLIRYRKR 79
|
|
| PRK12542 |
PRK12542 |
RNA polymerase sigma factor; Provisional |
24-177 |
3.74e-07 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183581 [Multi-domain] Cd Length: 185 Bit Score: 48.89 E-value: 3.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 24 YVDQLYAAALRMSRNSADAEDLVQETYM---KAFASYHQFTEgTNLKAWLYRILTNTYINLYRKR----------QREPQ 90
Cdd:PRK12542 18 YEQKVYYVAYSILNNIQQAEDAVQETFItlyKNLEKLHSLNT-QELKRYILRVAKNKAIDSYRKNkrhetfleeyERESI 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 91 QSQGETVEDWQLAQAGEhdavglrsAEVEALsalpntevreaLNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMS 170
Cdd:PRK12542 97 EAVDENIEEWEKRKMSE--------VQIDTL-----------LKELNESNRQVFKYKVFYNLTYQEISSVMGITEANVRK 157
|
....*..
gi 896410632 171 RLHRGRR 177
Cdd:PRK12542 158 QFERARK 164
|
|
| PRK09646 |
PRK09646 |
ECF RNA polymerase sigma factor SigK; |
29-183 |
6.12e-07 |
|
ECF RNA polymerase sigma factor SigK;
Pssm-ID: 182015 [Multi-domain] Cd Length: 194 Bit Score: 48.51 E-value: 6.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 29 YAAALRMSRNSADAEDLVQETYMKAFASYHQF--TEGTNLkAWLyriLTNTYinlyRK---RQREPQQSQGETVEDWQLA 103
Cdd:PRK09646 44 YGLVRRVLRDPGYSEETTQEVYLEVWRTASRFdpARGSAL-AWL---LTLAH----RRavdRVRSEQAASQREVRYGARN 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 104 QAGEHDAVglrSAEVEALsaLPNTEVREALNELSEDFRMVV---YYSdveGFAYKDIAEILDIPLGTVMSRLHRGRRILR 180
Cdd:PRK09646 116 VDPAFDQV---AEEVEAR--LERERVRDCLDALTDTQRESVtlaYYG---GLTYREVAERLAVPLGTVKTRMRDGLIRLR 187
|
...
gi 896410632 181 EKL 183
Cdd:PRK09646 188 DCL 190
|
|
| PRK12535 |
PRK12535 |
RNA polymerase sigma factor; Provisional |
42-176 |
6.17e-07 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237130 [Multi-domain] Cd Length: 196 Bit Score: 48.35 E-value: 6.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 42 AEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYINLYRKRQREPQQSQGEtVEDwqlaQAGEHDAVGLRSAEVEAL 121
Cdd:PRK12535 51 ADDLTQETYLRVMSALPRFAARSSARTWLLSLARRVWVDNIRHDMARPRKSATE-YED----AAATTASNETTGSWSEWI 125
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 896410632 122 salpntEVREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRGR 176
Cdd:PRK12535 126 ------DVRTLIDALPPERREALILTQVLGYTYEEAAKIADVRVGTIRSRVARAR 174
|
|
| PRK12534 |
PRK12534 |
RNA polymerase sigma factor; Provisional |
4-175 |
9.27e-06 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183576 [Multi-domain] Cd Length: 187 Bit Score: 45.05 E-value: 9.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 4 TNTAADTRELRERFTadaMQYVDQLYAAALRMSRNSADAEDLVQETYMKAFASYHQF--TEGTNLkAWLYRILTNTYINL 81
Cdd:PRK12534 17 TATAGGDRHAFEALY---RQTSPKLFGVCLRMIPQRAEAEEVLQDVFTLIWHKAGQFdpSRARGL-TWLAMIARNKAIDH 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 82 YRKRQrePQQsqgetvEDWQLAQAGEHDAVGlRSAEVEALSALPNTEVREALNELSEDFRMVVYYSDVEGFAYKDIAEIL 161
Cdd:PRK12534 93 LRANA--PQR------RNVALDDAGELRAAD-ASPLERTERASTRRRIDHCLAELEPPRSELIRTAFFEGITYEELAART 163
|
170
....*....|....
gi 896410632 162 DIPLGTVMSRLHRG 175
Cdd:PRK12534 164 DTPIGTVKSWIRRG 177
|
|
| PRK12544 |
PRK12544 |
RNA polymerase factor sigma-70; |
37-183 |
1.83e-05 |
|
RNA polymerase factor sigma-70;
Pssm-ID: 183583 [Multi-domain] Cd Length: 206 Bit Score: 44.41 E-value: 1.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 37 RNSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYINLYRKRQREPQQSQGETVEDWQLAQAGEHDAVGL-RS 115
Cdd:PRK12544 40 SDLHLAEDAVQEALIGALKNADSFAGRAAFKTWVFAILKNKIIDLLRQKKRHVSASSLLRDEEEEEDFEELFDESGHwQK 119
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 896410632 116 AEVEALSALPNTEVREA---------LNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRGRRILREKL 183
Cdd:PRK12544 120 DERPQAWGNPEESLEQEqfwrifeacLDGLPAKYARVFMMREFIELETNEICHAVDLSVSNLNVLLYRARLRLRECL 196
|
|
| PRK12545 |
PRK12545 |
RNA polymerase factor sigma-70; |
24-108 |
2.21e-05 |
|
RNA polymerase factor sigma-70;
Pssm-ID: 183584 [Multi-domain] Cd Length: 201 Bit Score: 44.18 E-value: 2.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 24 YVDQLYAAALRMSR----NSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYINLYRKRQREPQQS------Q 93
Cdd:PRK12545 13 YLAQLRHDLLRFARlqlrDADAAEDAVQEALAAAWSQAGRFAGQSAHKTWVFGILRNKLIDTLRARQRTVNLSaldaelD 92
|
90
....*....|....*
gi 896410632 94 GETVEDWQLAQAGEH 108
Cdd:PRK12545 93 GEALLDRELFKDNGH 107
|
|
| PRK12526 |
PRK12526 |
RNA polymerase sigma factor; Provisional |
38-185 |
2.64e-05 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237127 [Multi-domain] Cd Length: 206 Bit Score: 43.64 E-value: 2.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 38 NSADAEDLVQETYMKAFASYHQFTEGTNL-KAWLYRILTNTYINLYRKRQREPQQSQGETVedWQLAQAgehdAVGLRSA 116
Cdd:PRK12526 61 NEAQANELVQETMSNVWRKAHLYNGDKGAaTTWVYTVMRNAAFDMLRKIKAKKEQNLGDDI--WPIEQA----LAESQSE 134
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 896410632 117 EVEALSALPNTEVREALNELSEDFRMVV---YYSDVegfAYKDIAEILDIPLGTVMSRLHRGRRILREKLLD 185
Cdd:PRK12526 135 SEEFSDHLMDKQILSYIEKLPEAQQTVVkgvYFQEL---SQEQLAQQLNVPLGTVKSRLRLALAKLKVQMGE 203
|
|
| PRK09636 |
PRK09636 |
RNA polymerase sigma factor SigJ; Provisional |
27-163 |
5.08e-05 |
|
RNA polymerase sigma factor SigJ; Provisional
Pssm-ID: 236600 [Multi-domain] Cd Length: 293 Bit Score: 43.37 E-value: 5.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 27 QLYAAALRMSRNSADAEDLVQETYMKAFASyhQFTEGTNLKAWLYRILTNTYINLYR--KRQREpqQSQGE-----TVED 99
Cdd:PRK09636 16 HLLSVAYRMLGSVADAEDIVQEAWLRWNNA--DRAQIRDPRAWLTRVVTRLCLDRLRsaRHRRE--TYVGPwlpepVVEE 91
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 896410632 100 WQLAQAGEHDAVGLRsaeveaLSALpntevrEALNELSEDFRMVVYYSDVEGFAYKDIAEILDI 163
Cdd:PRK09636 92 LDDPLEAVVAAEDLS------LALM------LALERLSPLERAAFLLHDVFGVPFDEIASTLGR 143
|
|
| PRK06811 |
PRK06811 |
RNA polymerase factor sigma-70; Validated |
33-184 |
7.58e-05 |
|
RNA polymerase factor sigma-70; Validated
Pssm-ID: 180707 [Multi-domain] Cd Length: 189 Bit Score: 42.23 E-value: 7.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 33 LRMSRNSADAEDLVQETYMKAFASYHQFT-EGTNLKAWLYRILTNTYINLYRKRQREPQQSQGETVEDwqlaqagehdaV 111
Cdd:PRK06811 39 LGTVNYSQLIEECVNDIFLSIWNNIDKFDeEKGSFKKWIAAISKYKAIDYKRKLTKNNEIDSIDEFIL-----------I 107
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 896410632 112 GLRSAEVEALSALPNTEVREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRGRRILREKLL 184
Cdd:PRK06811 108 SEESIENEIILKENKEEILKLINDLEKLDREIFIRRYLLGEKIEEIAKKLGLTRSAIDNRLSRGRKKLQKNKL 180
|
|
| PRK06704 |
PRK06704 |
RNA polymerase subunit sigma-70; |
35-180 |
1.62e-04 |
|
RNA polymerase subunit sigma-70;
Pssm-ID: 180663 [Multi-domain] Cd Length: 228 Bit Score: 41.55 E-value: 1.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 35 MSRNSADAEDLVQETYMKAFASYhqfTEGTNLKAWLYRILTNTYINLYRKRQREPQQSQGETVEDWQLAQAGEHDAVGlr 114
Cdd:PRK06704 37 LTKNKWDGEDLAQETVCKVLQKY---SNKDICMTLVYKIARNRWLDQIKSKSVHEKIRDQITFEEPHEKIADLHEMVG-- 111
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 896410632 115 saevealsalpntevrEALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRGRRILR 180
Cdd:PRK06704 112 ----------------KVLSSLNVQQSAILLLKDVFQYSIADIAKVCSVSEGAVKASLFRSRNRLK 161
|
|
| PRK12536 |
PRK12536 |
RNA polymerase sigma factor; Provisional |
34-183 |
1.66e-04 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237131 [Multi-domain] Cd Length: 181 Bit Score: 41.19 E-value: 1.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 34 RMSRNSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYINLYRKRQRepQQSQGETVEDwqlaqagEHDAvgL 113
Cdd:PRK12536 41 RLPQLPDEVEDLVQEILLAVHNARHTYRADQPLTAWVHAIARYKLMDFLRSRAR--REALHDPLDD-------ESEL--F 109
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 114 RSAEVEALSAlpNTEVREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRGRRILREKL 183
Cdd:PRK12536 110 ATSDDEAAEA--RRDLGKLLEQLPDRQRLPIVHVKLEGLSVAETAQLTGLSESAVKVGIHRGLKALAAKI 177
|
|
| PRK07037 |
PRK07037 |
extracytoplasmic-function sigma-70 factor; Validated |
27-163 |
7.39e-04 |
|
extracytoplasmic-function sigma-70 factor; Validated
Pssm-ID: 180803 [Multi-domain] Cd Length: 163 Bit Score: 38.90 E-value: 7.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 27 QLYAAALRMSRNSADAEDLVQETYMKAFASYHQFTEGTNLkAWLYRILTNTYINLYRKRQREpqqsqgetvedwQLAQAG 106
Cdd:PRK07037 10 MLVKIAARIVGCRSRAEDVVQDAFVKLVEAPNQDAVKQPV-AYLFRIVRNLAIDHYRRQALE------------NKYHGD 76
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 896410632 107 EHDAVGLRSAEVEALSALPNTE----VREALNELSEDFRMVVYYSDVEGFAYKDIAEILDI 163
Cdd:PRK07037 77 EEDGLDVPSPEASPEAALINRDtlrhVADALSELPARTRYAFEMYRLHGETQKDIARELGV 137
|
|
| PRK12529 |
PRK12529 |
RNA polymerase sigma factor; Provisional |
42-175 |
1.09e-03 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183574 [Multi-domain] Cd Length: 178 Bit Score: 38.76 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 42 AEDLVQETYMKAFASyHQFTEGTNL---KAWLYRILTNTYINlYRKRQrEPQQSQGETVEdwQLAQAgEHDAVGLRSAEV 118
Cdd:PRK12529 42 ADDLAHDIFLRILAS-RDGGQREAIrqpRAYLARIANCVLVS-WRRRQ-SLELAWLEALA--TLPEP-LHPSPEQQSVIL 115
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 896410632 119 EALSalpntEVREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRG 175
Cdd:PRK12529 116 ETLH-----EIDALLDTLRPRVKQAFLMATLDGMKQKDIAQALDIALPTVKKYIHQA 167
|
|
| PRK12520 |
PRK12520 |
RNA polymerase sigma factor; Provisional |
37-105 |
1.98e-03 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237126 [Multi-domain] Cd Length: 191 Bit Score: 38.17 E-value: 1.98e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 896410632 37 RNSADAEDLVQETYMKAFASYHQFTEGTNLKAWLYRILTNTYINLYRKRQREPQQS--QGETVEDWQLAQA 105
Cdd:PRK12520 24 RDPALAEDAVSETLLAVLEHPERFAGQSSLKTYLVGILKHKIIDAIRSGRREVRLSldDADEQSDDDLFDA 94
|
|
| sigI |
PRK09635 |
RNA polymerase sigma factor SigI; Provisional |
32-177 |
2.73e-03 |
|
RNA polymerase sigma factor SigI; Provisional
Pssm-ID: 182008 [Multi-domain] Cd Length: 290 Bit Score: 38.41 E-value: 2.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 32 ALRMSRNSADAEDLVQETYMKAFASyhQFTEGTNLKAWLYRI---LTNTYINLYRKRQREPQQSQGETVEDWQLAQAGEH 108
Cdd:PRK09635 22 AFRMVGDIGVAEDMVQEAFSRLLRA--PVGDIDDERGWLIVVtsrLCLDHIKSASTRRERPQDIAAWHDGDASVSSVDPA 99
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 896410632 109 DAVGLrsaevealsalpNTEVREALNE----LSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRGRR 177
Cdd:PRK09635 100 DRVTL------------DDEVRLALLImlerLGPAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARR 160
|
|
| FliA |
COG1191 |
DNA-directed RNA polymerase specialized sigma subunit [Transcription]; DNA-directed RNA ... |
82-185 |
3.08e-03 |
|
DNA-directed RNA polymerase specialized sigma subunit [Transcription]; DNA-directed RNA polymerase specialized sigma subunit is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 440804 [Multi-domain] Cd Length: 236 Bit Score: 37.88 E-value: 3.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 82 YRKRQREPQQSQGETVEDWQLAQAGEHDAVGLRSAEVEALSALPNTEVREALNELSEDFRMVV--YYsdVEGFAYKDIAE 159
Cdd:COG1191 133 VQEALEAANAYQLLSLDEPLEDGDDLLDLLESGDPEEELEHEELREALAEAIEQLPERERLVLslYY--FEELTLKEIAE 210
|
90 100
....*....|....*....|....*..
gi 896410632 160 ILDIPLGTVmSRLH-RGRRILREKLLD 185
Cdd:COG1191 211 VLGVSESRV-SRLHkKALARLREYLKE 236
|
|
| PRK09047 |
PRK09047 |
RNA polymerase factor sigma-70; Validated |
37-186 |
3.85e-03 |
|
RNA polymerase factor sigma-70; Validated
Pssm-ID: 236367 [Multi-domain] Cd Length: 161 Bit Score: 36.87 E-value: 3.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 37 RNSADAEDLVQETYMKAFASYHQFTEgTNLKAWLYRILTNTYINLYRKRQR-------------EPQQSQGETVEDWQLA 103
Cdd:PRK09047 2 RDDDAALDIVQDAMIKLAEKYGDRPA-AEWPPLFQRILQNRIHDWFRRQKVrntwvslfssfsdDDDDDDFDPLETLDSA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896410632 104 QAGEHDAVG-LRSAEV-----EALSALPNTEvREAlnelsedFRMVVYysdvEGFaykDIAE---ILDIPLGTVMSRLHR 174
Cdd:PRK09047 81 DEGAESPADkLERAQVlqlieEAIQKLPARQ-REA-------FLLRYW----EDM---DVAEtaaAMGCSEGSVKTHCSR 145
|
170
....*....|..
gi 896410632 175 GRRILREKLLDY 186
Cdd:PRK09047 146 ATHALAKALEAK 157
|
|
| PRK06930 |
PRK06930 |
positive control sigma-like factor; Validated |
129-177 |
4.89e-03 |
|
positive control sigma-like factor; Validated
Pssm-ID: 180757 [Multi-domain] Cd Length: 170 Bit Score: 36.63 E-value: 4.89e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 896410632 129 VREALNELSEDFRMVVYYSDVEGFAYKDIAEILDIPLGTVMSRLHRGRR 177
Cdd:PRK06930 108 IEDALSVLTEREKEVYLMHRGYGLSYSEIADYLNIKKSTVQSMIERAEK 156
|
|
| |
