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Conserved domains on  [gi|896487886|ref|WP_049398165|]
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MULTISPECIES: phosphoribosylglycinamide formyltransferase [Stenotrophomonas]

Protein Classification

phosphoribosylglycinamide formyltransferase( domain architecture ID 10001018)

phosphoribosylglycinamide formyltransferase catalyzes the transfer of a formyl group from lO-formyltetrahydrofolate to glycinamide ribonucleotide

CATH:  3.40.50.170
EC:  2.1.2.2
Gene Symbol:  purN
Gene Ontology:  GO:0006974|GO:0004644|GO:0006189
SCOP:  4000065

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PurN COG0299
Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and ...
4-203 2.22e-99

Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]; Folate-dependent phosphoribosylglycinamide formyltransferase PurN is part of the Pathway/BioSystem: Purine biosynthesis


:

Pssm-ID: 440068 [Multi-domain]  Cd Length: 202  Bit Score: 286.93  E-value: 2.22e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886   4 TTRIAVLASGRGSNLQAILDAIADGRLPAEVVGVFSDRPAAEALQRVA----PNLrwAHAPKSFSDRASYEQALGDALAA 79
Cdd:COG0299    1 MKRIAVLISGRGSNLQALIDAIEAGDLPAEIVLVISNRPDAYGLERARaagiPTF--VLDHKDFPSREAFDAALLEALDA 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886  80 VQPDWIVCAGYMRILGAAFVQRFNGRLVNIHPSLLPLHKGLDTHARALQAGDAEHGASVHLVVPELDAGAVLAQVRVPVL 159
Cdd:COG0299   79 YGPDLVVLAGFMRILTPEFVRAFPGRIINIHPSLLPAFPGLHAHRQALEAGVKVTGCTVHFVDEEVDTGPIIAQAAVPVL 158
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 896487886 160 PGDDADSLAARVLAVEHPLLIATLQLLCAGRLAEREGQPQLDGH 203
Cdd:COG0299  159 PDDTEETLAARILEQEHRLYPEAIRLLAEGRLTLDGRRVRLDGE 202
 
Name Accession Description Interval E-value
PurN COG0299
Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and ...
4-203 2.22e-99

Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]; Folate-dependent phosphoribosylglycinamide formyltransferase PurN is part of the Pathway/BioSystem: Purine biosynthesis


Pssm-ID: 440068 [Multi-domain]  Cd Length: 202  Bit Score: 286.93  E-value: 2.22e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886   4 TTRIAVLASGRGSNLQAILDAIADGRLPAEVVGVFSDRPAAEALQRVA----PNLrwAHAPKSFSDRASYEQALGDALAA 79
Cdd:COG0299    1 MKRIAVLISGRGSNLQALIDAIEAGDLPAEIVLVISNRPDAYGLERARaagiPTF--VLDHKDFPSREAFDAALLEALDA 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886  80 VQPDWIVCAGYMRILGAAFVQRFNGRLVNIHPSLLPLHKGLDTHARALQAGDAEHGASVHLVVPELDAGAVLAQVRVPVL 159
Cdd:COG0299   79 YGPDLVVLAGFMRILTPEFVRAFPGRIINIHPSLLPAFPGLHAHRQALEAGVKVTGCTVHFVDEEVDTGPIIAQAAVPVL 158
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 896487886 160 PGDDADSLAARVLAVEHPLLIATLQLLCAGRLAEREGQPQLDGH 203
Cdd:COG0299  159 PDDTEETLAARILEQEHRLYPEAIRLLAEGRLTLDGRRVRLDGE 202
FMT_core_GART cd08645
Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART); ...
6-186 5.14e-87

Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART); Phosphoribosylglycinamide formyltransferase, also known as GAR transformylase or GART, is an essential enzyme that catalyzes the third step in de novo purine biosynthesis. This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. In prokaryotes, GART is a single domain protein but in most eukaryotes it is the C-terminal portion of a large multifunctional protein which also contains GAR synthetase and aminoimidazole ribonucleotide synthetase activities.


Pssm-ID: 187714 [Multi-domain]  Cd Length: 183  Bit Score: 254.62  E-value: 5.14e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886   6 RIAVLASGRGSNLQAILDAIADGRLPAEVVGVFSDRPAAEALQRvAPNLR---WAHAPKSFSDRASYEQALGDALAAVQP 82
Cdd:cd08645    1 RIAVLASGSGSNLQALIDAIKSGKLNAEIVLVISNNPDAYGLER-AKKAGiptFVINRKDFPSREEFDEALLELLKEYKV 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886  83 DWIVCAGYMRILGAAFVQRFNGRLVNIHPSLLPLHKGLDTHARALQAGDAEHGASVHLVVPELDAGAVLAQVRVPVLPGD 162
Cdd:cd08645   80 DLIVLAGFMRILSPEFLEAFPGRIINIHPSLLPKFYGLHAHEAALEAGVKVTGCTVHFVDEEVDTGPIIAQAAVPVLPGD 159
                        170       180
                 ....*....|....*....|....
gi 896487886 163 DADSLAARVLAVEHPLLIATLQLL 186
Cdd:cd08645  160 TPETLAERIHALEHRLYPEAIKLL 183
PurN TIGR00639
phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent; This model ...
6-191 2.48e-69

phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent; This model describes phosphoribosylglycinamide formyltransferase (GAR transformylase), one of several proteins in formyl_transf (pfam00551). This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. PurT, a different GAR transformylase, uses ATP and formate rather than formyl tetrahydrofolate. Experimental proof includes complementation of E. coli purN mutants by orthologs from vertebrates (where it is a domain of a multifunctional protein), Bacillus subtilis, and Arabidopsis. No archaeal example was detected. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]


Pssm-ID: 161973 [Multi-domain]  Cd Length: 190  Bit Score: 210.31  E-value: 2.48e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886    6 RIAVLASGRGSNLQAILDAIADGRLPAEVVGVFSDRPAAEALQRVAPNLRWAHA--PKSFSDRASYEQALGDALAAVQPD 83
Cdd:TIGR00639   2 RIVVLISGNGSNLQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVlsLKDFPSREAFDQAIIEELRAHEVD 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886   84 WIVCAGYMRILGAAFVQRFNGRLVNIHPSLLPLHKGLDTHARALQAGDAEHGASVHLVVPELDAGAVLAQVRVPVLPGDD 163
Cdd:TIGR00639  82 LVVLAGFMRILGPTFLSRFAGRILNIHPSLLPAFPGLHAVEQALEAGVKESGCTVHYVDEEVDTGPIIAQAKVPILPEDT 161
                         170       180
                  ....*....|....*....|....*...
gi 896487886  164 ADSLAARVLAVEHPLLIATLQLLCAGRL 191
Cdd:TIGR00639 162 EETLEQRIHKQEHRIYPLAIAWFAQGRL 189
Formyl_trans_N pfam00551
Formyl transferase; This family includes the following members. Glycinamide ribonucleotide ...
6-183 2.86e-57

Formyl transferase; This family includes the following members. Glycinamide ribonucleotide transformylase catalyzes the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyltetrahydrofolate deformylase produces formate from formyl- tetrahydrofolate. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. Inclusion of the following members is supported by PSI-blast. HOXX_BRAJA (P31907) contains a related domain of unknown function. PRTH_PORGI (P46071) contains a related domain of unknown function. Y09P_MYCTU (Q50721) contains a related domain of unknown function.


Pssm-ID: 395436 [Multi-domain]  Cd Length: 181  Bit Score: 179.41  E-value: 2.86e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886    6 RIAVLASGRGSNLQAILDAIADGRLPAEVVGVFSDRPAAEALQRVAPNLRWAH--APKSFSDRASYEQALGDALAAVQPD 83
Cdd:pfam00551   2 KIAVLISGTGSNLQALIDALRKGGQDADVVLVISNKDKAAGLGRAEQAGIPTFvfEHKGLTPRSLFDQELADALRALAAD 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886   84 WIVCAGYMRILGAAFVQRFNGRLVNIHPSLLPLHKGLDTHARALQAGDAEHGASVHLVVPELDAGAVLAQVRVPVLPGDD 163
Cdd:pfam00551  82 VIVLAGYMRILPPEFLQAPPGGILNIHPSLLPRFRGAAPIQRALEAGDKETGVTIHFVDEGLDTGPILAQKAVPILPDDT 161
                         170       180
                  ....*....|....*....|
gi 896487886  164 ADSLAARVLAVEHPLLIATL 183
Cdd:pfam00551 162 AETLYNRVADLEHKALPRVL 181
PLN02331 PLN02331
phosphoribosylglycinamide formyltransferase
6-205 4.45e-36

phosphoribosylglycinamide formyltransferase


Pssm-ID: 177965 [Multi-domain]  Cd Length: 207  Bit Score: 125.96  E-value: 4.45e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886   6 RIAVLASGRGSNLQAILDAIADGRLPAEVVGVFSDRP----AAEALQRVAPNLrwAHAPKSFSDRASYEQALGDALAAVQ 81
Cdd:PLN02331   1 KLAVFVSGGGSNFRAIHDACLDGRVNGDVVVVVTNKPgcggAEYARENGIPVL--VYPKTKGEPDGLSPDELVDALRGAG 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886  82 PDWIVCAGYMRILGAAFVQRFNGRLVNIHPSLLPL-----HKGLDTHARALQAGDAEHGASVHLVVPELDAGAVLAQVRV 156
Cdd:PLN02331  79 VDFVLLAGYLKLIPVELVRAYPRSILNIHPALLPAfggkgYYGIKVHKAVIASGARYSGPTVHFVDEHYDTGRILAQRVV 158
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 896487886 157 PVLPGDDADSLAARVLAVEHPLLIATLQLLCAGRLAEREgqpqlDGHPL 205
Cdd:PLN02331 159 PVLATDTPEELAARVLHEEHQLYVEVVAALCEERIVWRE-----DGVPL 202
 
Name Accession Description Interval E-value
PurN COG0299
Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and ...
4-203 2.22e-99

Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]; Folate-dependent phosphoribosylglycinamide formyltransferase PurN is part of the Pathway/BioSystem: Purine biosynthesis


Pssm-ID: 440068 [Multi-domain]  Cd Length: 202  Bit Score: 286.93  E-value: 2.22e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886   4 TTRIAVLASGRGSNLQAILDAIADGRLPAEVVGVFSDRPAAEALQRVA----PNLrwAHAPKSFSDRASYEQALGDALAA 79
Cdd:COG0299    1 MKRIAVLISGRGSNLQALIDAIEAGDLPAEIVLVISNRPDAYGLERARaagiPTF--VLDHKDFPSREAFDAALLEALDA 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886  80 VQPDWIVCAGYMRILGAAFVQRFNGRLVNIHPSLLPLHKGLDTHARALQAGDAEHGASVHLVVPELDAGAVLAQVRVPVL 159
Cdd:COG0299   79 YGPDLVVLAGFMRILTPEFVRAFPGRIINIHPSLLPAFPGLHAHRQALEAGVKVTGCTVHFVDEEVDTGPIIAQAAVPVL 158
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 896487886 160 PGDDADSLAARVLAVEHPLLIATLQLLCAGRLAEREGQPQLDGH 203
Cdd:COG0299  159 PDDTEETLAARILEQEHRLYPEAIRLLAEGRLTLDGRRVRLDGE 202
FMT_core_GART cd08645
Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART); ...
6-186 5.14e-87

Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART); Phosphoribosylglycinamide formyltransferase, also known as GAR transformylase or GART, is an essential enzyme that catalyzes the third step in de novo purine biosynthesis. This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. In prokaryotes, GART is a single domain protein but in most eukaryotes it is the C-terminal portion of a large multifunctional protein which also contains GAR synthetase and aminoimidazole ribonucleotide synthetase activities.


Pssm-ID: 187714 [Multi-domain]  Cd Length: 183  Bit Score: 254.62  E-value: 5.14e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886   6 RIAVLASGRGSNLQAILDAIADGRLPAEVVGVFSDRPAAEALQRvAPNLR---WAHAPKSFSDRASYEQALGDALAAVQP 82
Cdd:cd08645    1 RIAVLASGSGSNLQALIDAIKSGKLNAEIVLVISNNPDAYGLER-AKKAGiptFVINRKDFPSREEFDEALLELLKEYKV 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886  83 DWIVCAGYMRILGAAFVQRFNGRLVNIHPSLLPLHKGLDTHARALQAGDAEHGASVHLVVPELDAGAVLAQVRVPVLPGD 162
Cdd:cd08645   80 DLIVLAGFMRILSPEFLEAFPGRIINIHPSLLPKFYGLHAHEAALEAGVKVTGCTVHFVDEEVDTGPIIAQAAVPVLPGD 159
                        170       180
                 ....*....|....*....|....
gi 896487886 163 DADSLAARVLAVEHPLLIATLQLL 186
Cdd:cd08645  160 TPETLAERIHALEHRLYPEAIKLL 183
PurN TIGR00639
phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent; This model ...
6-191 2.48e-69

phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent; This model describes phosphoribosylglycinamide formyltransferase (GAR transformylase), one of several proteins in formyl_transf (pfam00551). This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. PurT, a different GAR transformylase, uses ATP and formate rather than formyl tetrahydrofolate. Experimental proof includes complementation of E. coli purN mutants by orthologs from vertebrates (where it is a domain of a multifunctional protein), Bacillus subtilis, and Arabidopsis. No archaeal example was detected. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]


Pssm-ID: 161973 [Multi-domain]  Cd Length: 190  Bit Score: 210.31  E-value: 2.48e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886    6 RIAVLASGRGSNLQAILDAIADGRLPAEVVGVFSDRPAAEALQRVAPNLRWAHA--PKSFSDRASYEQALGDALAAVQPD 83
Cdd:TIGR00639   2 RIVVLISGNGSNLQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVlsLKDFPSREAFDQAIIEELRAHEVD 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886   84 WIVCAGYMRILGAAFVQRFNGRLVNIHPSLLPLHKGLDTHARALQAGDAEHGASVHLVVPELDAGAVLAQVRVPVLPGDD 163
Cdd:TIGR00639  82 LVVLAGFMRILGPTFLSRFAGRILNIHPSLLPAFPGLHAVEQALEAGVKESGCTVHYVDEEVDTGPIIAQAKVPILPEDT 161
                         170       180
                  ....*....|....*....|....*...
gi 896487886  164 ADSLAARVLAVEHPLLIATLQLLCAGRL 191
Cdd:TIGR00639 162 EETLEQRIHKQEHRIYPLAIAWFAQGRL 189
Formyl_trans_N pfam00551
Formyl transferase; This family includes the following members. Glycinamide ribonucleotide ...
6-183 2.86e-57

Formyl transferase; This family includes the following members. Glycinamide ribonucleotide transformylase catalyzes the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyltetrahydrofolate deformylase produces formate from formyl- tetrahydrofolate. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. Inclusion of the following members is supported by PSI-blast. HOXX_BRAJA (P31907) contains a related domain of unknown function. PRTH_PORGI (P46071) contains a related domain of unknown function. Y09P_MYCTU (Q50721) contains a related domain of unknown function.


Pssm-ID: 395436 [Multi-domain]  Cd Length: 181  Bit Score: 179.41  E-value: 2.86e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886    6 RIAVLASGRGSNLQAILDAIADGRLPAEVVGVFSDRPAAEALQRVAPNLRWAH--APKSFSDRASYEQALGDALAAVQPD 83
Cdd:pfam00551   2 KIAVLISGTGSNLQALIDALRKGGQDADVVLVISNKDKAAGLGRAEQAGIPTFvfEHKGLTPRSLFDQELADALRALAAD 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886   84 WIVCAGYMRILGAAFVQRFNGRLVNIHPSLLPLHKGLDTHARALQAGDAEHGASVHLVVPELDAGAVLAQVRVPVLPGDD 163
Cdd:pfam00551  82 VIVLAGYMRILPPEFLQAPPGGILNIHPSLLPRFRGAAPIQRALEAGDKETGVTIHFVDEGLDTGPILAQKAVPILPDDT 161
                         170       180
                  ....*....|....*....|
gi 896487886  164 ADSLAARVLAVEHPLLIATL 183
Cdd:pfam00551 162 AETLYNRVADLEHKALPRVL 181
FMT_core cd08369
Formyltransferase, catalytic core domain; Formyltransferase, catalytic core domain. The ...
7-185 5.48e-40

Formyltransferase, catalytic core domain; Formyltransferase, catalytic core domain. The proteins of this superfamily contain a formyltransferase domain that hydrolyzes the removal of a formyl group from its substrate as part of a multistep transfer mechanism, and this alignment model represents the catalytic core of the formyltransferase domain. This family includes the following known members; Glycinamide Ribonucleotide Transformylase (GART), Formyl-FH4 Hydrolase, Methionyl-tRNA Formyltransferase, ArnA, and 10-Formyltetrahydrofolate Dehydrogenase (FDH). Glycinamide Ribonucleotide Transformylase (GART) catalyzes the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyl-FH4 Hydrolase catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Methionyl-tRNA Formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA, which plays important role in translation initiation. ArnA is required for the modification of lipid A with 4-amino-4-deoxy-l-arabinose (Ara4N) that leads to resistance to cationic antimicrobial peptides (CAMPs) and clinical antimicrobials such as polymyxin. 10-formyltetrahydrofolate dehydrogenase (FDH) catalyzes the conversion of 10-formyltetrahydrofolate, a precursor for nucleotide biosynthesis, to tetrahydrofolate. Members of this family are multidomain proteins. The formyltransferase domain is located at the N-terminus of FDH, Methionyl-tRNA Formyltransferase and ArnA, and at the C-terminus of Formyl-FH4 Hydrolase. Prokaryotic Glycinamide Ribonucleotide Transformylase (GART) is a single domain protein while eukaryotic GART is a trifunctional protein that catalyzes the second, third and fifth steps in de novo purine biosynthesis.


Pssm-ID: 187712 [Multi-domain]  Cd Length: 173  Bit Score: 134.72  E-value: 5.48e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886   7 IAVLasGRGSNLQAILDAIADGRLpAEVVGVFSDRPAAEALqrvAPNLRWAHAPKSFSDRASYEQALGDALAAVQPDWIV 86
Cdd:cd08369    1 IVIL--GSGNIGQRVLKALLSKEG-HEIVGVVTHPDSPRGT---AQLSLELVGGKVYLDSNINTPELLELLKEFAPDLIV 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886  87 CAGYMRILGAAFVQRFNGRLVNIHPSLLPLHKGLDTHARALQAGDAEHGASVHLVVPELDAGAVLAQVRVPVLPGDDADS 166
Cdd:cd08369   75 SINFRQIIPPEILKLPPGGAINIHPSLLPRYRGVNPLAWAIINGEKETGVTVHYMDEGIDTGDIIAQEVIPISPDDTAGT 154
                        170
                 ....*....|....*....
gi 896487886 167 LAARVLAVEHPLLIATLQL 185
Cdd:cd08369  155 LYQRLIELGPKLLKEALQK 173
PLN02331 PLN02331
phosphoribosylglycinamide formyltransferase
6-205 4.45e-36

phosphoribosylglycinamide formyltransferase


Pssm-ID: 177965 [Multi-domain]  Cd Length: 207  Bit Score: 125.96  E-value: 4.45e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886   6 RIAVLASGRGSNLQAILDAIADGRLPAEVVGVFSDRP----AAEALQRVAPNLrwAHAPKSFSDRASYEQALGDALAAVQ 81
Cdd:PLN02331   1 KLAVFVSGGGSNFRAIHDACLDGRVNGDVVVVVTNKPgcggAEYARENGIPVL--VYPKTKGEPDGLSPDELVDALRGAG 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886  82 PDWIVCAGYMRILGAAFVQRFNGRLVNIHPSLLPL-----HKGLDTHARALQAGDAEHGASVHLVVPELDAGAVLAQVRV 156
Cdd:PLN02331  79 VDFVLLAGYLKLIPVELVRAYPRSILNIHPALLPAfggkgYYGIKVHKAVIASGARYSGPTVHFVDEHYDTGRILAQRVV 158
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 896487886 157 PVLPGDDADSLAARVLAVEHPLLIATLQLLCAGRLAEREgqpqlDGHPL 205
Cdd:PLN02331 159 PVLATDTPEELAARVLHEEHQLYVEVVAALCEERIVWRE-----DGVPL 202
Fmt COG0223
Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis];
18-199 2.28e-26

Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis];


Pssm-ID: 439993 [Multi-domain]  Cd Length: 308  Bit Score: 102.88  E-value: 2.28e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886  18 LQAILDAiadgrlPAEVVGVFS--DRPA------------AEALQRvapNLRWaHAPKSFSDRASYEQalgdaLAAVQPD 83
Cdd:COG0223   16 LEALLAA------GHEVVAVVTqpDRPAgrgrkltpspvkELALEH---GIPV-LQPESLKDPEFLEE-----LRALNPD 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886  84 WIVCAGYMRILGAAFVQRFNGRLVNIHPSLLPLHKGLDTHARALQAGDAEHGASVHLVVPELDAGAVLAQVRVPVLPGDD 163
Cdd:COG0223   81 LIVVVAYGQILPKEVLDIPRLGCINLHASLLPRYRGAAPIQWAILNGDTETGVTIMQMDEGLDTGDILLQEEVPIGPDDT 160
                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 896487886 164 ADSLAARVLAVEHPLLIATLQLLCAGRLaerEGQPQ 199
Cdd:COG0223  161 AGSLHDKLAELGAELLLETLDALEAGTL---TPTPQ 193
PurU COG0788
Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]; Formyltetrahydrofolate ...
6-173 1.08e-24

Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]; Formyltetrahydrofolate hydrolase is part of the Pathway/BioSystem: Purine biosynthesis


Pssm-ID: 440551 [Multi-domain]  Cd Length: 282  Bit Score: 98.20  E-value: 1.08e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886   6 RIAVLASGRGSNLQAILDAIADGRLPAEVVGVFSDRPAAEALQRVApNLRWAHAPKSFSDRASYEQALGDALAAVQPDWI 85
Cdd:COG0788   88 RVAILVSKEDHCLNDLLYRWRSGELPAEIPAVISNHPDLRPLAEWF-GIPFHHIPVTKETKAEAEARLLELLEEYDIDLV 166
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886  86 VCAGYMRILGAAFVQRFNGRLVNIHPSLLPLHKGldthARA-LQAgdaeH-------GASVHLVVPELDAGAVLAQVRVP 157
Cdd:COG0788  167 VLARYMQILSPDFCARLPGRIINIHHSFLPAFKG----AKPyHQA----YergvkliGATAHYVTADLDEGPIIEQDVER 238
                        170       180
                 ....*....|....*....|...
gi 896487886 158 VLPGDDADSLAA-------RVLA 173
Cdd:COG0788  239 VDHRDTPEDLVRkgrdvekRVLA 261
FMT_core_Formyl-FH4-Hydrolase_C cd08648
Formyltetrahydrofolate deformylase (Formyl-FH4 hydrolase), C-terminal hydrolase domain; ...
6-191 8.82e-24

Formyltetrahydrofolate deformylase (Formyl-FH4 hydrolase), C-terminal hydrolase domain; Formyl-FH4 Hydrolase catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formate is the substrate of phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase has been proposed to regulate the balance of FH4 and C1-FH4 in the cell. The enzyme uses methionine and glycine to sense the pools of C1-FH4 and FH4, respectively. This domain belongs to the formyltransferase (FMT) domain superfamily. Members of this family have an N-terminal ACT domain, which is commonly involved in specifically bind an amino acid or other small ligand leading to regulation of the enzyme. The N-terminal of this protein family may be responsible for the binding of the regulators methionine and glycine.


Pssm-ID: 187717 [Multi-domain]  Cd Length: 196  Bit Score: 93.78  E-value: 8.82e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886   6 RIAVLASGRGSNLQAILDAIADGRLPAEVVGVFSDRPAAEALQRVApNLRWAHAPKSFSDRASYEQALGDALAAVQPDWI 85
Cdd:cd08648    2 RVAIFVSKEDHCLYDLLHRWREGELPCEIPLVISNHPDLRPLAERF-GIPFHHIPVTKDTKAEAEAEQLELLEEYGVDLV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886  86 VCAGYMRILGAAFVQRFNGRLVNIHPSLLPLHKGLDTHARALQAGDAEHGASVHLVVPELDAGAVLAQVRVPVLPGDDAD 165
Cdd:cd08648   81 VLARYMQILSPDFVERYPNRIINIHHSFLPAFKGAKPYHQAFERGVKLIGATAHYVTEELDEGPIIEQDVERVSHRDSVE 160
                        170       180
                 ....*....|....*....|....*.
gi 896487886 166 SLAARVLAVEHPLLIATLQLLCAGRL 191
Cdd:cd08648  161 DLVRKGRDIEKQVLARAVKWHLEDRV 186
PurU TIGR00655
formyltetrahydrofolate deformylase; This model describes formyltetrahydrofolate deformylases. ...
6-191 2.66e-23

formyltetrahydrofolate deformylase; This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]


Pssm-ID: 273199 [Multi-domain]  Cd Length: 280  Bit Score: 94.42  E-value: 2.66e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886    6 RIAVLASGRGSNLQAILDAIADGRLPAEVVGVFSDRPAAEALQRVApNLRWAHAPKSFSDRASYEQALGDALAAVQPDWI 85
Cdd:TIGR00655  86 RVAILVSKEDHCLGDLLWRWYSGELDAEIALVISNHEDLRSLVERF-GIPFHYIPATKDNRVEHEKRQLELLKQYQVDLV 164
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886   86 VCAGYMRILGAAFVQRFNGRLVNIHPSLLPLHKGLDTHARALQAGDAEHGASVHLVVPELDAGAVLAQVRVPVLPGDDAD 165
Cdd:TIGR00655 165 VLAKYMQILSPDFVKRYPNKIINIHHSFLPAFIGANPYQRAYERGVKIIGATAHYVTEELDEGPIIEQDVVRVDHTDNVE 244
                         170       180
                  ....*....|....*....|....*.
gi 896487886  166 SLAARVLAVEHPLLIATLQLLCAGRL 191
Cdd:TIGR00655 245 DLIRAGRDIEKVVLARAVKLHLEDRV 270
PLN02285 PLN02285
methionyl-tRNA formyltransferase
18-208 5.15e-23

methionyl-tRNA formyltransferase


Pssm-ID: 215159 [Multi-domain]  Cd Length: 334  Bit Score: 94.37  E-value: 5.15e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886  18 LQAILDAIADGRLPAEVVGVFSDRPAAEALQRVA-PNLRWAHAPKS-------FSDRASYEQALGDALAAVQPDWIVCAG 89
Cdd:PLN02285  22 LDALLDASQAPDSAFEVAAVVTQPPARRGRGRKLmPSPVAQLALDRgfppdliFTPEKAGEEDFLSALRELQPDLCITAA 101
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886  90 YMRILGAAFVQRFNGRLVNIHPSLLPLHKGLDTHARALQAGDAEHGASVHLVVPELDAGAVLAQVRVPVLPGDDADSLAA 169
Cdd:PLN02285 102 YGNILPQKFLDIPKLGTVNIHPSLLPLYRGAAPVQRALQDGVNETGVSVAFTVRALDAGPVIAQERVEVDEDIKAPELLP 181
                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 896487886 170 RVLAVEHPLLIATLQLLCAGRLAEReGQPQLDGHPLFSP 208
Cdd:PLN02285 182 LLFELGTKLLLRELPSVLDGSAKDK-ATPQDDSKATHAP 219
fmt TIGR00460
methionyl-tRNA formyltransferase; The top-scoring characterized proteins other than ...
31-208 9.45e-23

methionyl-tRNA formyltransferase; The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met. [Protein synthesis, tRNA aminoacylation]


Pssm-ID: 273088 [Multi-domain]  Cd Length: 313  Bit Score: 93.62  E-value: 9.45e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886   31 PAEVVGVF--SDRPAAEALQRVAPNLRWAHAPKSF------SDRASYEQALgdaLAAVQPDWIVCAGYMRILGAAFVQRF 102
Cdd:TIGR00460  23 NFEVVGVVtqPDKPAGRGKKLTPPPVKVLAEEKGIpvfqpeKQRQLEELPL---VRELKPDVIVVVSFGKILPKEFLDLF 99
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886  103 NGRLVNIHPSLLPLHKGLDTHARALQAGDAEHGASVHLVVPELDAGAVLAQVRVPVLPGDDADSLAARVLAVEHPLLIAT 182
Cdd:TIGR00460 100 PYGCINVHPSLLPRWRGGAPIQRAILNGDKKTGVTIMQMVPKMDAGDILKQETFPIEEEDNSGTLSDKLSELGAQLLIET 179
                         170       180
                  ....*....|....*....|....*.
gi 896487886  183 LQLLCAGRLaerEGQPQLDGHPLFSP 208
Cdd:TIGR00460 180 LKELPEGKN---KPEPQDAEEATYAP 202
FMT_core_Met-tRNA-FMT_N cd08646
Methionyl-tRNA formyltransferase, N-terminal hydrolase domain; Methionyl-tRNA ...
20-198 1.17e-21

Methionyl-tRNA formyltransferase, N-terminal hydrolase domain; Methionyl-tRNA formyltransferase (Met-tRNA-FMT), N-terminal formyltransferase domain. Met-tRNA-FMT transfers a formyl group from N-10 formyltetrahydrofolate to the amino terminal end of a methionyl-aminoacyl-tRNA acyl moiety, yielding formyl-Met-tRNA. Formyl-Met-tRNA plays essential role in protein translation initiation by forming complex with IF2. The formyl group plays a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. The N-terminal domain contains a Rossmann fold and it is the catalytic domain of the enzyme.


Pssm-ID: 187715 [Multi-domain]  Cd Length: 204  Bit Score: 88.27  E-value: 1.17e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886  20 AILDAIADgrLPAEVVGVFS--DRPAAEALQRVAPNL-RWA-------HAPKSFSDRASYEQalgdaLAAVQPDWIVCAG 89
Cdd:cd08646   14 PSLEALLK--SGHEVVAVVTqpDKPRGRGKKLTPSPVkELAlelglpvLQPEKLKDEEFLEE-----LKALKPDLIVVVA 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886  90 YMRILGAAFVQRFNGRLVNIHPSLLPLHKGldthA----RALQAGDAEHGASVHLVVPELDAGAVLAQVRVPVLPGDDAD 165
Cdd:cd08646   87 YGQILPKEILDLPPYGCINVHPSLLPKYRG----AapiqRAILNGDKETGVTIMKMDEGLDTGDILAQEEVPIDPDDTAG 162
                        170       180       190
                 ....*....|....*....|....*....|....
gi 896487886 166 SLAARvLAVE-HPLLIATLQLLCAGrLAEREGQP 198
Cdd:cd08646  163 ELLDK-LAELgADLLLEVLDDIEAG-KLNPVPQD 194
FMT_core_like_3 cd08653
Formyl transferase catalytic core domain found in a group of proteins with unknown functions; ...
75-181 5.85e-18

Formyl transferase catalytic core domain found in a group of proteins with unknown functions; Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalyzes the transfer of one-carbon groups, specifically the formyl- or hydroxymethyl- group. This domain contains a Rossmann fold and it is the catalytic domain of the enzyme.


Pssm-ID: 187721 [Multi-domain]  Cd Length: 152  Bit Score: 77.25  E-value: 5.85e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886  75 DALAAVQPDWIVCAGyMRILGAAFVQRFNGRLVNIHPSLLPLHKGLDTHARALQAGDAEH-GASVHLVVPELDAGAVLAQ 153
Cdd:cd08653   41 AALRALAPDVVSVYG-CGIIKDALLAIPPLGVLNLHGGILPDYRGVHTGFWALANGDPDNvGVTVHLVDAGIDTGDVLAQ 119
                         90       100
                 ....*....|....*....|....*...
gi 896487886 154 VRVPVLPGDDADSLAARVLAVEHPLLIA 181
Cdd:cd08653  120 ARPPLAAGDTLLSLYLRLYRAGVELMVE 147
purU PRK13010
formyltetrahydrofolate deformylase; Reviewed
28-175 1.60e-16

formyltetrahydrofolate deformylase; Reviewed


Pssm-ID: 139334 [Multi-domain]  Cd Length: 289  Bit Score: 75.99  E-value: 1.60e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886  28 GRLPAEVVGVFSDRPAAEALQRVApNLRWAHAPKSFSDRASYEQALGDALAAVQPDWIVCAGYMRILGAAFVQRFNGRLV 107
Cdd:PRK13010 117 GELDMDIVGIISNHPDLQPLAVQH-DIPFHHLPVTPDTKAQQEAQILDLIETSGAELVVLARYMQVLSDDLSRKLSGRAI 195
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 896487886 108 NIHPSLLPLHKGLDTHARALQAGDAEHGASVHLVVPELDAGAVLAQVRVPVLPGDDADSLAARVLAVE 175
Cdd:PRK13010 196 NIHHSFLPGFKGARPYHQAHARGVKLIGATAHFVTDDLDEGPIIEQDVERVDHSYSPEDLVAKGRDVE 263
purU PRK06027
formyltetrahydrofolate deformylase; Reviewed
6-173 9.24e-16

formyltetrahydrofolate deformylase; Reviewed


Pssm-ID: 235676 [Multi-domain]  Cd Length: 286  Bit Score: 73.99  E-value: 9.24e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886   6 RIAVLASGRGSNLQAILDAIADGRLPAEVVGVFSDRPAAEALqrVAP-NLRWAHAPKSFSDRASYEQALGDALAAVQPDW 84
Cdd:PRK06027  91 RVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHDDLRSL--VERfGIPFHHVPVTKETKAEAEARLLELIDEYQPDL 168
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886  85 IVCAGYMRILGAAFVQRFNGRLVNIHPSLLPLHKGLDTHARALQAGDAEHGASVHLVVPELDAGAVLAQVRVPVLPGDDA 164
Cdd:PRK06027 169 VVLARYMQILSPDFVARFPGRIINIHHSFLPAFKGAKPYHQAYERGVKLIGATAHYVTADLDEGPIIEQDVIRVDHRDTA 248
                        170
                 ....*....|....*.
gi 896487886 165 DSLAA-------RVLA 173
Cdd:PRK06027 249 EDLVRagrdvekQVLA 264
FMT_core_ArnA_N cd08644
ArnA, N-terminal formyltransferase domain; ArnA_N: ArnA is a bifunctional enzyme required for ...
29-194 1.75e-15

ArnA, N-terminal formyltransferase domain; ArnA_N: ArnA is a bifunctional enzyme required for the modification of lipid A with 4-amino-4-deoxy-L-arabinose (Ara4N) that leads to resistance to cationic antimicrobial peptides (CAMPs) and clinical antimicrobials such as polymyxin. The C-terminal dehydrogenase domain of ArnA catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto-arabinose (UDP-Ara4O), while the N-terminal formyltransferase domain of ArnA catalyzes the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido-arabinose (UDP-L-Ara4FN). This domain family represents the catalytic core of the N-terminal formyltransferase domain. The formyltransferase also contains a smaller C-terminal domain the may be involved in substrate binding. ArnA forms a hexameric structure, in which the dehydrogenase domains are arranged at the center of the particle with the transformylase domains on the outside of the particle.


Pssm-ID: 187713 [Multi-domain]  Cd Length: 203  Bit Score: 71.99  E-value: 1.75e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886  29 RLPAEVVGVF--SDRPAAEALQRVAPNLRWAHAPKSFSDRASYEQALGDALAAVQPDWIVCAGYMRILGAAFVQRFNGRL 106
Cdd:cd08644   21 AAGFEVVAVFthTDNPGENIWFGSVAQLAREHGIPVFTPDDINHPEWVERLRALKPDLIFSFYYRHMISEDILEIARLGA 100
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886 107 VNIHPSLLPLHKGLDTHARALQAGDAEHGASVHLVVPELDAGAVLAQVRVPVLPGDDADSLAARVLAVEHPLLIATLQLL 186
Cdd:cd08644  101 FNLHGSLLPKYRGRAPLNWALINGETETGVTLHRMTKKPDAGAIVDQEKVPILPDDTAKSLFHKLCVAARRLLARTLPAL 180

                 ....*...
gi 896487886 187 CAGRLAER 194
Cdd:cd08644  181 KAGKARER 188
PLN02828 PLN02828
formyltetrahydrofolate deformylase
6-191 4.87e-15

formyltetrahydrofolate deformylase


Pssm-ID: 178422  Cd Length: 268  Bit Score: 71.70  E-value: 4.87e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886   6 RIAVLASGRGSNLQAILDAIADGRLPAEVVGVFS--DRPAAEALQRVapnLRWAHAPKSFSDRASYEQALGDALAAVQ-P 82
Cdd:PLN02828  72 KIAVLASKQDHCLIDLLHRWQDGRLPVDITCVISnhERGPNTHVMRF---LERHGIPYHYLPTTKENKREDEILELVKgT 148
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886  83 DWIVCAGYMRILGAAFVQRFNGRLVNIHPSLLPLHKGLDTHARALQAGDAEHGASVHLVVPELDAGAVLAQVRVPVLPGD 162
Cdd:PLN02828 149 DFLVLARYMQILSGNFLKGYGKDIINIHHGLLPSFKGGNPSKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRD 228
                        170       180
                 ....*....|....*....|....*....
gi 896487886 163 DADSLAARVLAVEHPLLIATLQLLCAGRL 191
Cdd:PLN02828 229 NLRSFVQKSENLEKQCLAKAIKSYCELRV 257
PRK13011 PRK13011
formyltetrahydrofolate deformylase; Reviewed
28-169 5.38e-14

formyltetrahydrofolate deformylase; Reviewed


Pssm-ID: 237266 [Multi-domain]  Cd Length: 286  Bit Score: 69.24  E-value: 5.38e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886  28 GRLPAEVVGVFSDRPAaeaLQRVAPN--LRWAHAPKSFSDRASYEQALGDALAAVQPDWIVCAGYMRILGAAFVQRFNGR 105
Cdd:PRK13011 113 GELPMDIVGVVSNHPD---LEPLAAWhgIPFHHFPITPDTKPQQEAQVLDVVEESGAELVVLARYMQVLSPELCRKLAGR 189
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 896487886 106 LVNIHPSLLPLHKGLDTHARALQAGDAEHGASVHLVVPELDAGAVLAQVRVPVLPGDDADSLAA 169
Cdd:PRK13011 190 AINIHHSFLPGFKGAKPYHQAYERGVKLIGATAHYVTDDLDEGPIIEQDVERVDHAYSPEDLVA 253
FMT_core_NRPS_like cd08649
N-terminal formyl transferase catalytic core domain of NRPS_like proteins, one of the proteins ...
71-170 1.00e-11

N-terminal formyl transferase catalytic core domain of NRPS_like proteins, one of the proteins involved in the synthesis of Oxazolomycin; This family represents the N-terminal formyl transferase catalytic core domain present in a subgroup of non-ribosomal peptide synthetases. In Streptomyces albus a member of this family has been shown to be involved in the synthesis of oxazolomycin (OZM). OZM is a hybrid peptide-polyketide antibiotic and exhibits potent antitumor and antiviral activities. It is a multi-domain protein consisting of a formyl transferase domain, a Flavin-utilizing monoxygenase domain, a LuxE domain functioning as an acyl protein synthetase and a pp-binding domain, which may function as an acyl carrier. It shows sequence similarity with other peptide-polyketide biosynthesis proteins.


Pssm-ID: 187718 [Multi-domain]  Cd Length: 166  Bit Score: 60.74  E-value: 1.00e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886  71 QALGDALAAVQPDWIVCAGYMRILGAAFVQRFNGRLVNIHPSLLPLHKGLDTHARALQAGDAEHGASVHLVVPELDAGAV 150
Cdd:cd08649   51 EALEELLSDEPFDWLFSIVNLRILPSEVLALPRKGAINFHDGPLPRYAGLNATSWALLAGETRHGVTWHRIEEGVDAGDI 130
                         90       100
                 ....*....|....*....|
gi 896487886 151 LAQVRVPVLPGDDADSLAAR 170
Cdd:cd08649  131 LVQRPFDIAPDDTALSLNLK 150
FMT_core_like_5 cd08823
Formyl transferase catalytic core domain found in a group of proteins with unknown functions; ...
7-186 8.18e-11

Formyl transferase catalytic core domain found in a group of proteins with unknown functions; Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalyzes the transfer of one-carbon groups, specifically the formyl- or hydroxymethyl- group. This domain contains a Rossmann fold and it is the catalytic domain of the enzyme.


Pssm-ID: 187725 [Multi-domain]  Cd Length: 177  Bit Score: 58.61  E-value: 8.18e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886   7 IAVLASGRGSnLQAILDAIADGRLPAEVVgvfSDRPAAEALQRVAPNLRWAHAPKSFSDRASYEQALGDALAAVQPDWIV 86
Cdd:cd08823    1 IVILCNTSMA-APLLGQLLSEGRLAGIAV---PAHNASYFPQIFVFTGIRRLVSKQRVDTANLKEQLAEWLRALAADTVV 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886  87 CAGYMRILGAAFVQRFNGRLVNIHPSLLPLHKGLDTHARALQAGDAEHGASVHLVVPELDAGAVLAQVRVPVLPGDDADS 166
Cdd:cd08823   77 VFTFPYRIPQHILDLPPLGFYNLHPGLLPAYRGPDPLFWQIRNQEQETAITVHKMTAEIDRGPIVLEQFTPIHPDDTYGL 156
                        170       180
                 ....*....|....*....|
gi 896487886 167 LAARVLAVEHPLLIATLQLL 186
Cdd:cd08823  157 LCSRLAMLAVGLLEELYQNL 176
PRK08125 PRK08125
bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ...
75-195 2.98e-10

bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA;


Pssm-ID: 236156 [Multi-domain]  Cd Length: 660  Bit Score: 59.23  E-value: 2.98e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886  75 DALAAVQPDWIVCAGYMRILGAAFVQRFNGRLVNIHPSLLPLHKGLDTHARALQAGDAEHGASVHLVVPELDAGAVLAQV 154
Cdd:PRK08125  69 ERIRELAPDVIFSFYYRNLLSDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQQ 148
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 896487886 155 RVPVLPGDDADSLAARVLAVEHPLLIATLQLLCAGRLAERE 195
Cdd:PRK08125 149 RVAIAPDDTALTLHHKLCHAARQLLEQTLPAIKHGNIPEIP 189
FMT_core_like_4 cd08651
Formyl transferase catalytic core domain found in a group of proteins with unknown functions; ...
6-174 1.17e-09

Formyl transferase catalytic core domain found in a group of proteins with unknown functions; Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalyzes the transfer of one-carbon groups, specifically the formyl- or hydroxymethyl- group. This domain contains a Rossmann fold and it is the catalytic domain of the enzyme.


Pssm-ID: 187720 [Multi-domain]  Cd Length: 180  Bit Score: 55.35  E-value: 1.17e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886   6 RIAVLASGRGSnlQAILDAIAdgRLPAEVVGVFSDRPaaEALQRV------APNLRWAHAP-KSFSDRASYEQALgdALA 78
Cdd:cd08651    1 RIVFIGCVEFS--LIALEAIL--EAGGEVVGVITLDD--SSSNNDsdyldlDSFARKNGIPyYKFTDINDEEIIE--WIK 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886  79 AVQPDWIVCAGYMRILGAAFVQRFNGRLVNIHPSLLPLHKGLDTHARALQAGDAEHGASVHLVVPELDAGAVLAQVRVPV 158
Cdd:cd08651   73 EANPDIIFVFGWSQLLKPEILAIPRLGVIGFHPTKLPKNRGRAPIPWAILLGLKETASTFFWMDEGADSGDILSQEPFPI 152
                        170
                 ....*....|....*.
gi 896487886 159 LPGDDADSLAARVLAV 174
Cdd:cd08651  153 DKDDTANSLYDKIMEA 168
FMT_core_like_2 cd08822
Formyl transferase catalytic core domain found in a group of proteins with unknown functions; ...
83-173 2.81e-08

Formyl transferase catalytic core domain found in a group of proteins with unknown functions; Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalyzes the transfer of one-carbon groups, specifically the formyl- or hydroxymethyl- group. This domain contains a Rossmann fold and it is the catalytic domain of the enzyme.


Pssm-ID: 187724 [Multi-domain]  Cd Length: 192  Bit Score: 51.69  E-value: 2.81e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886  83 DWIVCAGYMRILGAAFVQRFNGRLVNIHPSLLPLHKGLDTHARALQAGDAEHGASVHLVVPELDAGAVLAQVRVPVLPGD 162
Cdd:cd08822   68 DLIVAAHCHAFISAKTRARARLGAIGYHPSLLPRHRGRDAVEWTIRMRDPITGGTVYHLDDGVDGGPIAAQDWCHVRPGD 147
                         90
                 ....*....|.
gi 896487886 163 DADSLAARVLA 173
Cdd:cd08822  148 TAAELWRRALA 158
PRK06988 PRK06988
formyltransferase;
72-181 5.20e-08

formyltransferase;


Pssm-ID: 235902 [Multi-domain]  Cd Length: 312  Bit Score: 52.00  E-value: 5.20e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886  72 ALGDALAAVQPDWIVCAGYMRILGAAFVQRFNGRLVNIHPSLLPLHKGLDTHARALQAGDAEHGASVHLVVPELDAGAVL 151
Cdd:PRK06988  68 ELRAAVAAAAPDFIFSFYYRHMIPVDLLALAPRGAYNMHGSLLPKYRGRVPVNWAVLNGETETGATLHEMVAKPDAGAIV 147
                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 896487886 152 AQVRVPVLPGDDADSL-------AARVLAVEHPLLIA 181
Cdd:PRK06988 148 DQTAVPILPDDTAAQVfdkvtvaAEQTLWRVLPALLA 184
FMT_core_like_6 cd08820
Formyl transferase catalytic core domain found in a group of proteins with unknown functions; ...
83-176 6.32e-07

Formyl transferase catalytic core domain found in a group of proteins with unknown functions; Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalyzes the transfer of one-carbon groups, specifically the formyl- or hydroxymethyl- group. This domain contains a Rossmann fold and it is the catalytic domain of the enzyme.


Pssm-ID: 187722 [Multi-domain]  Cd Length: 173  Bit Score: 47.82  E-value: 6.32e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886  83 DWIVCAGYMRILGAAFVQRFNGRLVNIHPSLLPLHKGLDTHARALQAGDAEHGASVHLVVPELDAGAVLAQVRVPVLPGD 162
Cdd:cd08820   71 DILISVQYHWILPGSILEKAKEIAFNLHNAPLPEYRGCNQFSHAILNGDDQFGTTIHWMAEGIDSGDIIFEKRFPIPSDC 150
                         90       100
                 ....*....|....*....|
gi 896487886 163 DADSL------AARVLAVEH 176
Cdd:cd08820  151 TVISLyilahyAAIALFGEH 170
FMT_core_FDH_N cd08647
10-formyltetrahydrofolate dehydrogenase (FDH), N-terminal hydrolase domain; This family ...
110-172 3.55e-05

10-formyltetrahydrofolate dehydrogenase (FDH), N-terminal hydrolase domain; This family represents the N-terminal hydrolase domain of the bifunctional protein 10-formyltetrahydrofolate dehydrogenase (FDH). This domain contains a 10-formyl-tetrahydrofolate (10-formyl-THF) binding site and shares sequence homology and structural topology with other enzymes utilizing this substrate. This domain functions as a hydrolase, catalyzing the conversion of 10-formyl-THF, a precursor for nucleotide biosynthesis, to tetrahydrofolate (THF). The overall FDH reaction mechanism is a coupling of two sequential reactions, a hydrolase and a formyl dehydrogenase, bridged by a substrate transfer step. The N-terminal hydrolase domain removes the formyl group from 10-formyl-THF and the C-terminal NADP-dependent dehydrogenase domain then reduces the formyl group to carbon dioxide. The two catalytic domains are connected by a third intermediate linker domain that transfers the formyl group, covalently attached to the sulfhydryl group of the phosphopantetheine arm, from the N-terminal domain to the C-terminal domain.


Pssm-ID: 187716 [Multi-domain]  Cd Length: 203  Bit Score: 43.21  E-value: 3.55e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 896487886 110 HPSLLPLHKGLDTHARALQAGDAEHGASVHLVVPELDAGAVLAQVRVPVLPGDDADSLAARVL 172
Cdd:cd08647  106 HPSILPRHRGASAINWTLIHGDKKAGFTIFWADDGLDTGPILLQKECDVLPNDTVDTLYNRFL 168
PRK07579 PRK07579
dTDP-4-amino-4,6-dideoxyglucose formyltransferase;
60-179 1.05e-04

dTDP-4-amino-4,6-dideoxyglucose formyltransferase;


Pssm-ID: 236058 [Multi-domain]  Cd Length: 245  Bit Score: 42.20  E-value: 1.05e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896487886  60 PKSFSDRASYEQALGDALAAVQPDWIVcAGYMRILGAAFVQRF-----NG-RLVNIHPSLLPLHKGLDTHARALqAGDAE 133
Cdd:PRK07579  37 SQTSFAKEIYQSPIKQLDVAERVAEIV-ERYDLVLSFHCKQRFpaklvNGvRCINIHPGFNPYNRGWFPQVFSI-INGLK 114
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 896487886 134 HGASVHLVVPELDAGAVLAQVRVPVLPGDDADSLAARVLAVEHPLL 179
Cdd:PRK07579 115 IGATIHEMDEQLDHGPIIAQREVEIESWDSSGSVYARVMDIERELV 160
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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