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Conserved domains on  [gi|896488677|ref|WP_049398842|]
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SseB family protein [Stenotrophomonas maltophilia]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SseB super family cl44560
SseB protein N-terminal domain; This family consists of several SseB proteins which appear to ...
 13-118 9.06e-03

SseB protein N-terminal domain; This family consists of several SseB proteins which appear to be found exclusively in Enterobacteria. SseB is known to enhance serine-sensitivity in Escherichia coli and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon. This entry contains the presumed N-terminal domain of SseB.


The actual alignment was detected with superfamily member pfam07179:

Pssm-ID: 462113 [Multi-domain]  Cd Length: 123  Bit Score: 33.88  E-value: 9.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896488677   13 LLKAAMDGAVPIRAFMEAFVASAVVLLTGSLVTPDGSGFDPLLFDKQ------------GTLHVAVFTDPSRvgIYSQQA 80
Cdd:pfam07179   5 LAALAAEPTENLAAFLEALLNARVLVPVVAELGEDEEEEDGLRVDKEsemalptlenpdGRRALPVFTSLEE--LAKWRA 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 896488677   81 DHQIRWLML---DVLRRVPGGYGVVINPGTSLGFEISPSGV 118
Cdd:pfam07179  83 DARPVPVVLpfaDLAALAEGAAGLVLNPGSPVGKELPPEEI 123
 
Name Accession Description Interval E-value
SseB pfam07179
SseB protein N-terminal domain; This family consists of several SseB proteins which appear to ...
 13-118 9.06e-03

SseB protein N-terminal domain; This family consists of several SseB proteins which appear to be found exclusively in Enterobacteria. SseB is known to enhance serine-sensitivity in Escherichia coli and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon. This entry contains the presumed N-terminal domain of SseB.


Pssm-ID: 462113 [Multi-domain]  Cd Length: 123  Bit Score: 33.88  E-value: 9.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896488677   13 LLKAAMDGAVPIRAFMEAFVASAVVLLTGSLVTPDGSGFDPLLFDKQ------------GTLHVAVFTDPSRvgIYSQQA 80
Cdd:pfam07179   5 LAALAAEPTENLAAFLEALLNARVLVPVVAELGEDEEEEDGLRVDKEsemalptlenpdGRRALPVFTSLEE--LAKWRA 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 896488677   81 DHQIRWLML---DVLRRVPGGYGVVINPGTSLGFEISPSGV 118
Cdd:pfam07179  83 DARPVPVVLpfaDLAALAEGAAGLVLNPGSPVGKELPPEEI 123
 
Name Accession Description Interval E-value
SseB pfam07179
SseB protein N-terminal domain; This family consists of several SseB proteins which appear to ...
 13-118 9.06e-03

SseB protein N-terminal domain; This family consists of several SseB proteins which appear to be found exclusively in Enterobacteria. SseB is known to enhance serine-sensitivity in Escherichia coli and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon. This entry contains the presumed N-terminal domain of SseB.


Pssm-ID: 462113 [Multi-domain]  Cd Length: 123  Bit Score: 33.88  E-value: 9.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896488677   13 LLKAAMDGAVPIRAFMEAFVASAVVLLTGSLVTPDGSGFDPLLFDKQ------------GTLHVAVFTDPSRvgIYSQQA 80
Cdd:pfam07179   5 LAALAAEPTENLAAFLEALLNARVLVPVVAELGEDEEEEDGLRVDKEsemalptlenpdGRRALPVFTSLEE--LAKWRA 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 896488677   81 DHQIRWLML---DVLRRVPGGYGVVINPGTSLGFEISPSGV 118
Cdd:pfam07179  83 DARPVPVVLpfaDLAALAEGAAGLVLNPGSPVGKELPPEEI 123
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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