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Conserved domains on  [gi|896545202|ref|WP_049446492|]
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MULTISPECIES: PilW family protein [Stenotrophomonas]

Protein Classification

PilW family protein( domain architecture ID 18793805)

PilW family protein similar to type IV pilus assembly protein PilW

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PilW COG4966
Type IV pilus assembly protein PilW [Cell motility, Extracellular structures];
7-166 3.10e-23

Type IV pilus assembly protein PilW [Cell motility, Extracellular structures];


:

Pssm-ID: 443992 [Multi-domain]  Cd Length: 158  Bit Score: 94.86  E-value: 3.10e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896545202   7 RQTMSGLSLIELMIALTIGLIIMLGVVQVFAASRTAYQLSEGLARVQENSRFAMDSLQRELRMAGHFGCVNDQAHDPQGT 86
Cdd:COG4966    1 RRRQRGFTLVELMVALAIGLIVLAAVLQLFLSSRRSYRTQEALARLQENGRFALDLLSRDLRQAGYFGCASGNGNPNGGA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896545202  87 LATTFAAGghPALDFARSIQGYEATNTKPGDAVTLAATPSTGGTKYSPALPSEFAAAIKNRVDGSDIVALRYLVPTGVPV 166
Cdd:COG4966   81 SVDIADDV--SVLDVLLDTLGGSGDSTLGASSVTGLGDATDALSLDGVRLLVTLTTSATLNAGLVVSTVLALTLDTAVRV 158
PilW pfam16074
Type IV Pilus-assembly protein W; PilW is a family of putative type IV pilus-assembly proteins. ...
 251-388 2.70e-22

Type IV Pilus-assembly protein W; PilW is a family of putative type IV pilus-assembly proteins. PilW is one of the component proteins of the pilus biogenesis process whereby pilus fibres are assembled in the periplasm, emerge onto the cell surface and are there stabilized, to allow bacterial attachment to host cells. PilW is an outer-membrane protein necessary for both the functionality of fibres and their stabilization.


:

Pssm-ID: 435119  Cd Length: 126  Bit Score: 91.23  E-value: 2.70e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896545202  251 ILYVGYDATTkQSSLYRLRFTAKPGAAlvaGPAEALVEGVENMQLLYGQDhglstVSPTGYIDRQGTATDVQASivpASR 330
Cdd:pfam16074   1 VYYIGTGSGG-IPALMRARLNRGSGGS---VTAQPLVEGVEDMQVLYGVD-----TDGDGTPDRYVTASQVTAL---ATT 68

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 896545202  331 GWQRVGTVQLGLVVSSPDPAASVqaSSSTPLTALGVTYTAPSD--GRMRAAYQSTIALRN 388
Cdd:pfam16074  69 DWRRVVAVRIALLVRSLQPDASY--SDTKTYTLLGVTVTPPSDtdGYRRHVFTTTVRLRN 126
 
Name Accession Description Interval E-value
PilW COG4966
Type IV pilus assembly protein PilW [Cell motility, Extracellular structures];
7-166 3.10e-23

Type IV pilus assembly protein PilW [Cell motility, Extracellular structures];


Pssm-ID: 443992 [Multi-domain]  Cd Length: 158  Bit Score: 94.86  E-value: 3.10e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896545202   7 RQTMSGLSLIELMIALTIGLIIMLGVVQVFAASRTAYQLSEGLARVQENSRFAMDSLQRELRMAGHFGCVNDQAHDPQGT 86
Cdd:COG4966    1 RRRQRGFTLVELMVALAIGLIVLAAVLQLFLSSRRSYRTQEALARLQENGRFALDLLSRDLRQAGYFGCASGNGNPNGGA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896545202  87 LATTFAAGghPALDFARSIQGYEATNTKPGDAVTLAATPSTGGTKYSPALPSEFAAAIKNRVDGSDIVALRYLVPTGVPV 166
Cdd:COG4966   81 SVDIADDV--SVLDVLLDTLGGSGDSTLGASSVTGLGDATDALSLDGVRLLVTLTTSATLNAGLVVSTVLALTLDTAVRV 158
PilW pfam16074
Type IV Pilus-assembly protein W; PilW is a family of putative type IV pilus-assembly proteins. ...
 251-388 2.70e-22

Type IV Pilus-assembly protein W; PilW is a family of putative type IV pilus-assembly proteins. PilW is one of the component proteins of the pilus biogenesis process whereby pilus fibres are assembled in the periplasm, emerge onto the cell surface and are there stabilized, to allow bacterial attachment to host cells. PilW is an outer-membrane protein necessary for both the functionality of fibres and their stabilization.


Pssm-ID: 435119  Cd Length: 126  Bit Score: 91.23  E-value: 2.70e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896545202  251 ILYVGYDATTkQSSLYRLRFTAKPGAAlvaGPAEALVEGVENMQLLYGQDhglstVSPTGYIDRQGTATDVQASivpASR 330
Cdd:pfam16074   1 VYYIGTGSGG-IPALMRARLNRGSGGS---VTAQPLVEGVEDMQVLYGVD-----TDGDGTPDRYVTASQVTAL---ATT 68

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 896545202  331 GWQRVGTVQLGLVVSSPDPAASVqaSSSTPLTALGVTYTAPSD--GRMRAAYQSTIALRN 388
Cdd:pfam16074  69 DWRRVVAVRIALLVRSLQPDASY--SDTKTYTLLGVTVTPPSDtdGYRRHVFTTTVRLRN 126
PRK10557 PRK10557
prepilin peptidase-dependent protein;
3-71 3.19e-05

prepilin peptidase-dependent protein;


Pssm-ID: 236714  Cd Length: 192  Bit Score: 44.20  E-value: 3.19e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 896545202   3 RMRSRQTmsGLSLIELMIALTIGLIIMLGVVQVFAASRTAYQLSEGLARVQENSRFAMDSLQRELRMAG 71
Cdd:PRK10557   1 AMPVKQR--GFSLLEVLLAMAIGSVLLLGAARFLPALQRQILTLTRQLRLEDEIWQRVFTVEKDLRRAG 67
N_methyl pfam07963
Prokaryotic N-terminal methylation motif; This short motif directs methylation of the ...
 11-33 1.06e-03

Prokaryotic N-terminal methylation motif; This short motif directs methylation of the conserved phenylalanine residue. It is most often found at the N-terminus of pilins and other proteins involved in secretion, see pfam00114, pfam05946, pfam02501 and pfam07596.


Pssm-ID: 429756 [Multi-domain]  Cd Length: 27  Bit Score: 36.20  E-value: 1.06e-03
                          10        20
                  ....*....|....*....|...
gi 896545202   11 SGLSLIELMIALTIGLIIMLGVV 33
Cdd:pfam07963   5 RGFTLIELLVALAILAILLAAAL 27
 
Name Accession Description Interval E-value
PilW COG4966
Type IV pilus assembly protein PilW [Cell motility, Extracellular structures];
7-166 3.10e-23

Type IV pilus assembly protein PilW [Cell motility, Extracellular structures];


Pssm-ID: 443992 [Multi-domain]  Cd Length: 158  Bit Score: 94.86  E-value: 3.10e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896545202   7 RQTMSGLSLIELMIALTIGLIIMLGVVQVFAASRTAYQLSEGLARVQENSRFAMDSLQRELRMAGHFGCVNDQAHDPQGT 86
Cdd:COG4966    1 RRRQRGFTLVELMVALAIGLIVLAAVLQLFLSSRRSYRTQEALARLQENGRFALDLLSRDLRQAGYFGCASGNGNPNGGA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896545202  87 LATTFAAGghPALDFARSIQGYEATNTKPGDAVTLAATPSTGGTKYSPALPSEFAAAIKNRVDGSDIVALRYLVPTGVPV 166
Cdd:COG4966   81 SVDIADDV--SVLDVLLDTLGGSGDSTLGASSVTGLGDATDALSLDGVRLLVTLTTSATLNAGLVVSTVLALTLDTAVRV 158
PilW pfam16074
Type IV Pilus-assembly protein W; PilW is a family of putative type IV pilus-assembly proteins. ...
 251-388 2.70e-22

Type IV Pilus-assembly protein W; PilW is a family of putative type IV pilus-assembly proteins. PilW is one of the component proteins of the pilus biogenesis process whereby pilus fibres are assembled in the periplasm, emerge onto the cell surface and are there stabilized, to allow bacterial attachment to host cells. PilW is an outer-membrane protein necessary for both the functionality of fibres and their stabilization.


Pssm-ID: 435119  Cd Length: 126  Bit Score: 91.23  E-value: 2.70e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896545202  251 ILYVGYDATTkQSSLYRLRFTAKPGAAlvaGPAEALVEGVENMQLLYGQDhglstVSPTGYIDRQGTATDVQASivpASR 330
Cdd:pfam16074   1 VYYIGTGSGG-IPALMRARLNRGSGGS---VTAQPLVEGVEDMQVLYGVD-----TDGDGTPDRYVTASQVTAL---ATT 68

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 896545202  331 GWQRVGTVQLGLVVSSPDPAASVqaSSSTPLTALGVTYTAPSD--GRMRAAYQSTIALRN 388
Cdd:pfam16074  69 DWRRVVAVRIALLVRSLQPDASY--SDTKTYTLLGVTVTPPSDtdGYRRHVFTTTVRLRN 126
PulJ COG4795
Type II secretory pathway, PulJ/GspJ component [Intracellular trafficking, secretion, and ...
 1-104 1.30e-13

Type II secretory pathway, PulJ/GspJ component [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443823 [Multi-domain]  Cd Length: 118  Bit Score: 66.96  E-value: 1.30e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896545202   1 MTRMRSRQtmSGLSLIELMIALTIGLIIMLGVVQVFAASRTAYQLSEGLARVQENSRFAMDSLQRELRMAGHFgcvndqa 80
Cdd:COG4795    1 MKRARRRQ--RGFTLLELLVALAIFALLLLAAYRGLDSVLRSRERLEQQAERLQELQRALALLERDLRQAGPR------- 71

                         90       100
                 ....*....|....*....|....
gi 896545202  81 HDPQGTLATTFAAGGHPALDFARS 104
Cdd:COG4795   72 PDEGGDPEPALSGGGSCLIDLNRN 95
PilV COG4967
Type IV pilus assembly protein PilV [Cell motility, Extracellular structures];
1-47 1.07e-05

Type IV pilus assembly protein PilV [Cell motility, Extracellular structures];


Pssm-ID: 443993 [Multi-domain]  Cd Length: 86  Bit Score: 43.43  E-value: 1.07e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 896545202   1 MTRMRSRQTMSGLSLIELMIALTIGLIIMLGVVQVFAAS----RTAYQLSE 47
Cdd:COG4967    1 MSRRRRRRRQRGFTLIEVLVALVILSIGLLGLAGLQAASlrssQDARQRTQ 51
PRK10557 PRK10557
prepilin peptidase-dependent protein;
3-71 3.19e-05

prepilin peptidase-dependent protein;


Pssm-ID: 236714  Cd Length: 192  Bit Score: 44.20  E-value: 3.19e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 896545202   3 RMRSRQTmsGLSLIELMIALTIGLIIMLGVVQVFAASRTAYQLSEGLARVQENSRFAMDSLQRELRMAG 71
Cdd:PRK10557   1 AMPVKQR--GFSLLEVLLAMAIGSVLLLGAARFLPALQRQILTLTRQLRLEDEIWQRVFTVEKDLRRAG 67
PulG COG2165
Type II secretory pathway, pseudopilin PulG [Cell motility, Intracellular trafficking, ...
 1-54 8.72e-05

Type II secretory pathway, pseudopilin PulG [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 441768 [Multi-domain]  Cd Length: 99  Bit Score: 41.05  E-value: 8.72e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 896545202   1 MTRMRSRQTMSGLSLIELMIALTIGLIIMLGVVQVFAASRTAYQLSEGLARVQE 54
Cdd:COG2165    1 MKLRRRRRRQRGFTLIELLVVIAIIGILAALALPALQGARERARRAELRSNLRQ 54
N_methyl pfam07963
Prokaryotic N-terminal methylation motif; This short motif directs methylation of the ...
 11-33 1.06e-03

Prokaryotic N-terminal methylation motif; This short motif directs methylation of the conserved phenylalanine residue. It is most often found at the N-terminus of pilins and other proteins involved in secretion, see pfam00114, pfam05946, pfam02501 and pfam07596.


Pssm-ID: 429756 [Multi-domain]  Cd Length: 27  Bit Score: 36.20  E-value: 1.06e-03
                          10        20
                  ....*....|....*....|...
gi 896545202   11 SGLSLIELMIALTIGLIIMLGVV 33
Cdd:pfam07963   5 RGFTLIELLVALAILAILLAAAL 27
FimT COG4970
Type IV pilus assembly protein FimT [Cell motility, Extracellular structures];
1-70 2.71e-03

Type IV pilus assembly protein FimT [Cell motility, Extracellular structures];


Pssm-ID: 443996 [Multi-domain]  Cd Length: 73  Bit Score: 36.36  E-value: 2.71e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896545202   1 MTRMRSRQtmSGLSLIELMIALTIgLIIMLGVVqvfaasrtAYQLSEGLARVQENSrfAMDSLQRELRMA 70
Cdd:COG4970    1 MKRLRRRQ--RGFTLIELLVVLAI-LAILAAIA--------VPSFSSLIARQRLRA--AANELAAALRLA 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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