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Conserved domains on  [gi|896580748|ref|WP_049469557|]
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MULTISPECIES: OmpA family protein [Stenotrophomonas]

Protein Classification

OmpA family protein( domain architecture ID 11483517)

OmpA family protein may bind peptidoglycan

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK09040 PRK09040
hypothetical protein; Provisional
 2-212 6.94e-141

hypothetical protein; Provisional


:

Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 392.07  E-value: 6.94e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748   2 SDELEVDGGSHAPIWAAFGDLMSVLLGAFVLILVGVVAVQLELSQRLDQEVKQRQAEAKRLQTLEQALAGPLAAGRVTLV 81
Cdd:PRK09040   1 SDEIDGGVEQTAPVWAVFGDLMSVLLGAFVLILVGVIGVQLELSSKLEAEVKQRQAEAQRRKTLEQALAGPLAAGRVTLV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748  82 DGRIGISGSVLFALNSDQLQPEGQELLRSLAAPLAAYLGSREEILMVSGFTDDAPVREGNRRFADNWELSAQRSLTVTRT 161
Cdd:PRK09040  81 NGRIGISGSVLFALNSDQLQPEGRELLKSLAGPLAAYLRARDEILMVSGFTDDQPVRAGNRRFADNWELSAQRALTVTRA 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 896580748 162 LIADGVPADAVFAAAFGSEQPVSSNANEEGRARNRRVEIAPIPKPKVADAK 212
Cdd:PRK09040 161 LIDAGVPASSVFAAAFGSEQPVASNADDEGRAKNRRVEIAPVPRPSASAGA 211
 
Name Accession Description Interval E-value
PRK09040 PRK09040
hypothetical protein; Provisional
 2-212 6.94e-141

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 392.07  E-value: 6.94e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748   2 SDELEVDGGSHAPIWAAFGDLMSVLLGAFVLILVGVVAVQLELSQRLDQEVKQRQAEAKRLQTLEQALAGPLAAGRVTLV 81
Cdd:PRK09040   1 SDEIDGGVEQTAPVWAVFGDLMSVLLGAFVLILVGVIGVQLELSSKLEAEVKQRQAEAQRRKTLEQALAGPLAAGRVTLV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748  82 DGRIGISGSVLFALNSDQLQPEGQELLRSLAAPLAAYLGSREEILMVSGFTDDAPVREGNRRFADNWELSAQRSLTVTRT 161
Cdd:PRK09040  81 NGRIGISGSVLFALNSDQLQPEGRELLKSLAGPLAAYLRARDEILMVSGFTDDQPVRAGNRRFADNWELSAQRALTVTRA 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 896580748 162 LIADGVPADAVFAAAFGSEQPVSSNANEEGRARNRRVEIAPIPKPKVADAK 212
Cdd:PRK09040 161 LIDAGVPASSVFAAAFGSEQPVASNADDEGRAKNRRVEIAPVPRPSASAGA 211
MotB COG1360
Flagellar motor protein MotB [Cell motility];
8-206 1.14e-47

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 154.23  E-value: 1.14e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748   8 DGGSHAPIW-AAFGDLMSVLLGAFVLILVgvvavqleLSQRLDQEVKQRQAEakrlqtleqalagplaagrVTLVDG--R 84
Cdd:COG1360    2 EEGHHGGAWlVTYADLMTLLLAFFVLLWA--------LSSALEENLLSGQVE-------------------VRITEEglV 54

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748  85 IGISGSVLFALNSDQLQPEGQELLRSLAAPLAAYlgsrEEILMVSGFTDDAPVRegNRRFADNWELSAQRSLTVTRTLIA 164
Cdd:COG1360   55 IEIQDRVLFDSGSAELTPEGRELLDKIAAVLAEV----PNRIRVEGHTDNVPIS--TARFPSNWELSAARAAAVVRYLIE 128

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 896580748 165 DGVPADAVFAAAFGSEQPVSSNANEEGRARNRRVEIAPIPKP 206
Cdd:COG1360  129 GGVPPERLSAVGYGDTRPLAPNDTPEGRARNRRVEIVILRRA 170
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 90-200 4.13e-31

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 109.56  E-value: 4.13e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748  90 SVLFALNSDQLQPEGQELLRSLAAPLAAYLGSReeiLMVSGFTDDAPvregnrRFADNWELSAQRSLTVTRTLIADGVPA 169
Cdd:cd07185    3 TIYFDFGSAELTPEAKPLLDKLAEVLKKNPDAK---IRIEGHTDSRG------SDAYNQELSERRAEAVADYLVSKGVDA 73

                         90       100       110
                 ....*....|....*....|....*....|.
gi 896580748 170 DAVFAAAFGSEQPVSSNANEEGRARNRRVEI 200
Cdd:cd07185   74 SRITAVGYGESRPIASNDTEEGRAKNRRVEI 104
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 64-200 6.05e-24

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 92.36  E-value: 6.05e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748   64 TLEQALAGPLAAGRVTLVD----GRIGISGSVLFALNSDQLQPEGQELLRSLAAPLAAYLGSreeiLMVSGFTDDAPVRe 139
Cdd:TIGR03350   1 RLRALLAPEIAAGLLTVDEdgdrSVVRLRGDELFASGSAEVRAEFEPLLLRIAKALAAVPGR----ITVVGHTDNVPIR- 75

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 896580748  140 gNRRFADNWELSAQRSLTVTRTLIADGVPADAVFAAAFGSEQPVSSNANEEGRARNRRVEI 200
Cdd:TIGR03350  76 -TARFPSNWHLSEARAKAVADVLAQAGGPAGRVRAEGRGDSEPIASNATAAGRARNRRVEI 135
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 93-195 4.46e-17

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 73.16  E-value: 4.46e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748   93 FALNSDQLQPEGQELLRSLAAPLAAYlgSREEILMVSGFTDDAPVREGNrrfadnWELSAQRSLTVTRTLIADGVPADAV 172
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFP--ELKNTITIEGHTDTVGSAAYN------WELSQRRAEAVRRYLVNFGVPPSRI 72

                          90       100
                  ....*....|....*....|...
gi 896580748  173 FAAAFGSEQPVSSNANEEGRARN 195
Cdd:pfam00691  73 SVVGYGATKPITDNKTPEGRARN 95
 
Name Accession Description Interval E-value
PRK09040 PRK09040
hypothetical protein; Provisional
 2-212 6.94e-141

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 392.07  E-value: 6.94e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748   2 SDELEVDGGSHAPIWAAFGDLMSVLLGAFVLILVGVVAVQLELSQRLDQEVKQRQAEAKRLQTLEQALAGPLAAGRVTLV 81
Cdd:PRK09040   1 SDEIDGGVEQTAPVWAVFGDLMSVLLGAFVLILVGVIGVQLELSSKLEAEVKQRQAEAQRRKTLEQALAGPLAAGRVTLV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748  82 DGRIGISGSVLFALNSDQLQPEGQELLRSLAAPLAAYLGSREEILMVSGFTDDAPVREGNRRFADNWELSAQRSLTVTRT 161
Cdd:PRK09040  81 NGRIGISGSVLFALNSDQLQPEGRELLKSLAGPLAAYLRARDEILMVSGFTDDQPVRAGNRRFADNWELSAQRALTVTRA 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 896580748 162 LIADGVPADAVFAAAFGSEQPVSSNANEEGRARNRRVEIAPIPKPKVADAK 212
Cdd:PRK09040 161 LIDAGVPASSVFAAAFGSEQPVASNADDEGRAKNRRVEIAPVPRPSASAGA 211
MotB COG1360
Flagellar motor protein MotB [Cell motility];
8-206 1.14e-47

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 154.23  E-value: 1.14e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748   8 DGGSHAPIW-AAFGDLMSVLLGAFVLILVgvvavqleLSQRLDQEVKQRQAEakrlqtleqalagplaagrVTLVDG--R 84
Cdd:COG1360    2 EEGHHGGAWlVTYADLMTLLLAFFVLLWA--------LSSALEENLLSGQVE-------------------VRITEEglV 54

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748  85 IGISGSVLFALNSDQLQPEGQELLRSLAAPLAAYlgsrEEILMVSGFTDDAPVRegNRRFADNWELSAQRSLTVTRTLIA 164
Cdd:COG1360   55 IEIQDRVLFDSGSAELTPEGRELLDKIAAVLAEV----PNRIRVEGHTDNVPIS--TARFPSNWELSAARAAAVVRYLIE 128

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 896580748 165 DGVPADAVFAAAFGSEQPVSSNANEEGRARNRRVEIAPIPKP 206
Cdd:COG1360  129 GGVPPERLSAVGYGDTRPLAPNDTPEGRARNRRVEIVILRRA 170
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 90-200 4.13e-31

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 109.56  E-value: 4.13e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748  90 SVLFALNSDQLQPEGQELLRSLAAPLAAYLGSReeiLMVSGFTDDAPvregnrRFADNWELSAQRSLTVTRTLIADGVPA 169
Cdd:cd07185    3 TIYFDFGSAELTPEAKPLLDKLAEVLKKNPDAK---IRIEGHTDSRG------SDAYNQELSERRAEAVADYLVSKGVDA 73

                         90       100       110
                 ....*....|....*....|....*....|.
gi 896580748 170 DAVFAAAFGSEQPVSSNANEEGRARNRRVEI 200
Cdd:cd07185   74 SRITAVGYGESRPIASNDTEEGRAKNRRVEI 104
PRK09039 PRK09039
peptidoglycan -binding protein;
78-200 3.06e-26

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 103.12  E-value: 3.06e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748  78 VTLVDGRIGISGSVLFALNSDQLQPEGQELLRSLAAPLAAyLGSR--EEI---LMVSGFTDDAPVReGNRRFADNWELSA 152
Cdd:PRK09039 213 IRIVGDRFVFQSEVLFPTGSAELNPEGQAEIAKLAAALIE-LAKEipPEInwvLRVDGHTDNVPLS-GTGRFRDNWELSS 290

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 896580748 153 QRSLTVTRTLIADGVPADAVFAAAFGSEQPVSSNANEEGRARNRRVEI 200
Cdd:PRK09039 291 ARAISVVKFLIALGVPADRLAAAGFGEFQPLDPGDTPEARARNRRIEL 338
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 49-200 3.15e-26

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 102.01  E-value: 3.15e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748  49 DQEVKQRQAEAKR--LQTLEQALAGPLAAGRVTLVDGRIGIS----GSVLFALNSDQLQPEGQELLRSLAAPLAAYlgsr 122
Cdd:PRK09038  87 SEQPDARAQDQLKtiADDLRKALGPLIESGQVTVRRNELWIEieinSSLLFGSGDAMLSDQAFAILEKVAEVLKPA---- 162

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 896580748 123 EEILMVSGFTDDAPVRegNRRFADNWELSAQRSLTVTRTLIADGVPADAVFAAAFGSEQPVSSNANEEGRARNRRVEI 200
Cdd:PRK09038 163 PNPIHVEGFTDNVPIA--TAQFPSNWELSAARAASVVRLLADDGVAPSRLAAVGYGEFQPVADNDTAEGRARNRRVVL 238
motB PRK08944
flagellar motor protein MotB; Reviewed
 41-201 4.72e-24

flagellar motor protein MotB; Reviewed


Pssm-ID: 236356 [Multi-domain]  Cd Length: 302  Bit Score: 96.62  E-value: 4.72e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748  41 QLELSQRLDQEVKQRQAEAKrLQTLEQALAGPLAAGRVTL------VDGRIGISGSvlFALNSDQLQPEGQELLRSLAAP 114
Cdd:PRK08944 128 EASAEVKAEKAAAQEQIEDL-VKKLAQQLEKEIEDGAIEIeslgqqIIIRIREKGS--FPSGSAFLQPKFKPVVRKIGEL 204

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748 115 LAaylgSREEILMVSGFTDDAPVRegNRRFADNWELSAQRSLTVTRTLIA-DGVPADAVFAAAFGSEQPVSSNANEEGRA 193
Cdd:PRK08944 205 LK----DVPGIITVSGHTDNVPIS--SELYRSNWDLSSARAVAVAHELLKvKGFDPQRLKVVGMADTQPLVPNDTAENRA 278


                 ....*...
gi 896580748 194 RNRRVEIA 201
Cdd:PRK08944 279 RNRRVEII 286
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 64-200 6.05e-24

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 92.36  E-value: 6.05e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748   64 TLEQALAGPLAAGRVTLVD----GRIGISGSVLFALNSDQLQPEGQELLRSLAAPLAAYLGSreeiLMVSGFTDDAPVRe 139
Cdd:TIGR03350   1 RLRALLAPEIAAGLLTVDEdgdrSVVRLRGDELFASGSAEVRAEFEPLLLRIAKALAAVPGR----ITVVGHTDNVPIR- 75

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 896580748  140 gNRRFADNWELSAQRSLTVTRTLIADGVPADAVFAAAFGSEQPVSSNANEEGRARNRRVEI 200
Cdd:TIGR03350  76 -TARFPSNWHLSEARAKAVADVLAQAGGPAGRVRAEGRGDSEPIASNATAAGRARNRRVEI 135
PRK08126 PRK08126
hypothetical protein; Provisional
 14-200 4.86e-22

hypothetical protein; Provisional


Pssm-ID: 236157 [Multi-domain]  Cd Length: 432  Bit Score: 92.83  E-value: 4.86e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748  14 PIWAAFGDLMSVLLGAFVLILVGVVAVQLELSQRLDQEVKQRQAEAKRLQTLEQALAGPLAAGRVTlVD-----GRIGIS 88
Cdd:PRK08126 244 PVWATAAVLSLILLGLFGWYKYRLLTRSADVQQRIAAIGRMTPPPAPHRLRLKILLKNEIARGTLS-VDedarhSSVVFR 322

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748  89 GSVLFALNSDQLQPEGQELLRSLAAPLAAYLGSreeiLMVSGFTDDAPVRegNRRFADNWELSAQRSLTVTRTLIADGVP 168
Cdd:PRK08126 323 GDAMFVPGQATVNPAMGPLIAKIAREIARVGGK----VTVTGHTDNQPIR--SAQFASNLVLSEKRAAQVAQMLQSAGVP 396

                        170       180       190
                 ....*....|....*....|....*....|..
gi 896580748 169 ADAVFAAAFGSEQPVSSNANEEGRARNRRVEI 200
Cdd:PRK08126 397 ASRLEAVGKGDAQPVADNRTPQGRAQNRRVEI 428
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 48-200 4.92e-22

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 91.38  E-value: 4.92e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748  48 LDQEVKQRQAEAKRLQTLEQALAGPLAAGRVTLVDGRIGISGSVLFALNSDQLQPEGQELLRSLAAPLAAYlgsREEILM 127
Cdd:COG2885  146 LAAAKALGDSAAAALDAAAKAEAAAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKEN---PDLRIE 222

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 896580748 128 VSGFTDdapvREGNRrfADNWELSAQRSLTVTRTLIADGVPADAVFAAAFGSEQPVSSNANEEGRARNRRVEI 200
Cdd:COG2885  223 IEGHTD----SRGSD--AYNLALSERRAEAVKDYLVSKGIPASRITAVGYGESRPVASNDTEEGRAKNRRVEI 289
motB PRK07734
flagellar motor protein MotB; Reviewed
 43-210 4.32e-20

flagellar motor protein MotB; Reviewed


Pssm-ID: 236080 [Multi-domain]  Cd Length: 259  Bit Score: 85.18  E-value: 4.32e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748  43 ELSQ---RLDQEVKQRQAEAKrLQT--LEQALAgplaagrvtlvdgrIGISGSVLFALNSDQLQPEGqellRSLAAPLAA 117
Cdd:PRK07734 106 ELKAvqkKIDQYIKEKQLSSS-LQTklTEEGLL--------------ITILDNILFDSGKADVRLED----LPLAKEISN 166

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748 118 YLGS---REeiLMVSGFTDDAPVRegNRRFADNWELSAQRSLTVTRTLIADGVPADAVFAA-AFGSEQPVSSNANEEGRA 193
Cdd:PRK07734 167 LLVSnppRN--ITISGHTDNVPIA--NAQFASNWELSVMRAVNFMQVLLENKELDPEKFSAkGYGEYKPIASNDTAEGRA 242

                        170
                 ....*....|....*..
gi 896580748 194 RNRRVEIAPIPKPKVAD 210
Cdd:PRK07734 243 KNRRVEVLILPLTEKNK 259
motB PRK08457
flagellar motor protein MotB; Reviewed
 50-200 7.88e-18

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 78.99  E-value: 7.88e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748  50 QEVKQRQAEAKRLQTLEQALAGPLAAGrvtlvdgrigisgsVLFALNSDQL-QPEGQELLRSLAApLAAYLGSREEIlMV 128
Cdd:PRK08457  97 ETIERRKGEGGALDQIDNGIALKLPSK--------------LLFENGSAEIiNADMMDYLKRIAK-IITKLPKQVKI-NV 160

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 896580748 129 SGFTDDAPVRegNRRFADNWELSAQRSLTVTRTLIADGVPADAVFAAAFGSEQPVSSNANEEGRARNRRVEI 200
Cdd:PRK08457 161 RGYTDNSPLN--KSRYKDHYELAAARAYNVMKVLIQYGINPNRLSFSSYGSNNPIAPNDSLENRLKNNRVEI 230
PRK07033 PRK07033
DotU family type VI secretion system protein;
14-206 1.92e-17

DotU family type VI secretion system protein;


Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 79.71  E-value: 1.92e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748  14 PIWAAfgdlmsVLLGAFVLILVgVVAVQLELSQRLD-------------QEVKQRQAEAKRLQTLEQALAGPLAAGRVTL 80
Cdd:PRK07033 229 PLWVC------VALALLLALLL-FIGLRWRLADRSDpvfaaiyalrlpvVQIARPAPQPPPAPRLAKFLEPEIRAGLVAV 301

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748  81 VD----GRIGISGSVLFALNSDQLQPEGQELLRSLAAPLAAYLGSreeiLMVSGFTDDAPVREGnrRFADNWELSAQRSL 156
Cdd:PRK07033 302 RDeadrSVVTLRGDGLFASASTSVRDRYQPVLARVADALNQVKGN----VLVTGYSDNVPIRTA--RFPSNWELSQARAQ 375

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 896580748 157 TVTRTLIADGVPADAVFAAAFGSEQPVSSNANEEGRARNRRVEIAPIPKP 206
Cdd:PRK07033 376 AVRALLAARLGQPERVTAEGRGDSDPVAPNDSAENRARNRRVEITLLVAP 425
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 93-195 4.46e-17

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 73.16  E-value: 4.46e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748   93 FALNSDQLQPEGQELLRSLAAPLAAYlgSREEILMVSGFTDDAPVREGNrrfadnWELSAQRSLTVTRTLIADGVPADAV 172
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFP--ELKNTITIEGHTDTVGSAAYN------WELSQRRAEAVRRYLVNFGVPPSRI 72

                          90       100
                  ....*....|....*....|...
gi 896580748  173 FAAAFGSEQPVSSNANEEGRARN 195
Cdd:pfam00691  73 SVVGYGATKPITDNKTPEGRARN 95
PRK10510 PRK10510
OmpA family lipoprotein;
90-204 1.53e-15

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 72.21  E-value: 1.53e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748  90 SVLFALNSDQLQPEGQELLRSLAAPLAAYLGSReeiLMVSGFTDDAPVREGNRRfadnweLSAQRSLTVTRTLIADGVPA 169
Cdd:PRK10510 113 NVTFDSSSATLKPAGANTLTGVAMVLKEYPKTA---VNVVGYTDSTGSHDLNMR------LSQQRADSVASALITQGVDA 183

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 896580748 170 DAVFAAAFGSEQPVSSNANEEGRARNRRVEIAPIP 204
Cdd:PRK10510 184 SRIRTQGMGPANPIASNSTAEGKAQNRRVEITLSP 218
motB PRK06667
flagellar motor protein MotB; Validated
 85-200 8.55e-13

flagellar motor protein MotB; Validated


Pssm-ID: 180652 [Multi-domain]  Cd Length: 252  Bit Score: 65.20  E-value: 8.55e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748  85 IGISGSVLFALNSDQLQ-PEGQELLRSLAApLAAYLGSREEILMVSGFTDDAPVrEGNRRFADNWELSAQRSLTVTRTLI 163
Cdd:PRK06667 121 ISLASDAFFYPGSAEVKlEENRETLQKIAS-FIGFLDLAGRNFRIEGHTDNVDV-NPEGPWKSNWELSGARAVNMLEYIL 198

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 896580748 164 ADGVPADAVF-AAAFGSEQPVSSNANEEGRARNRRVEI 200
Cdd:PRK06667 199 NYGDQSESWFqVSGFAGSRPLATEDTPEGRAYNRRIDI 236
PRK10808 PRK10808
outer membrane protein A; Reviewed
 72-200 1.90e-12

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 65.10  E-value: 1.90e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748  72 PLAAGRVTLVDGRIGISGSVLFALNSDQLQPEGQELLRSLAAPLAAyLGSREEILMVSGFTDdapvREGNRRFadNWELS 151
Cdd:PRK10808 207 PAPAPAPVVQTKHFTLKSDVLFNFNKATLKPEGQQALDQLYSQLSN-LDPKDGSVVVLGYTD----RIGSDAY--NQGLS 279

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 896580748 152 AQRSLTVTRTLIADGVPADAVFAAAFGSEQPVSSNANEEGRAR---------NRRVEI 200
Cdd:PRK10808 280 EKRAQSVVDYLVSKGIPADKISARGMGKSNPVTGNTCDNVKPRaalidclapDRRVEI 337
PRK06742 PRK06742
flagellar motor protein MotS; Reviewed
 13-200 2.44e-12

flagellar motor protein MotS; Reviewed


Pssm-ID: 102525 [Multi-domain]  Cd Length: 225  Bit Score: 63.54  E-value: 2.44e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748  13 APIW-AAFGDLMSVLLGAFVLILVGVVAVQLELSQRLDQEVKQRQAEA----------------------KRLQTLEQAL 69
Cdd:PRK06742   9 SPRWmTTFTDLTMLLLTFFVLLVATSKQDAVKLSKMLEKFSDTEQVDAkvmentipdishekndekmiskKRMDELYKKL 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748  70 AGPLAAGRVTLVDG-------RIGISGSVLFALNSDQLQPEGQELLrslaAPLAAYLGSREEILMVSGFTDDAPVRegNR 142
Cdd:PRK06742  89 KAYVDNNGISQVNVyredtgvSVVIVDNLIFDTGDANVKPEAKEII----SQLVGFFQSVPNPIVVEGHTDSRPIH--ND 162

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 896580748 143 RFADNWELSAQRSLTVTRTLI-ADGVPADAVFAAAFGSEQPVSSNANEEGRARNRRVEI 200
Cdd:PRK06742 163 KFPSNWELSSARAANMIHHLIeVYNVDDKRLAAVGYADTKPVVPNDSPQNWEKNRRVVI 221
PRK06925 PRK06925
flagellar motor protein MotB;
91-206 4.40e-11

flagellar motor protein MotB;


Pssm-ID: 235887 [Multi-domain]  Cd Length: 230  Bit Score: 60.16  E-value: 4.40e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748  91 VLFALNSDQLQPEGQELLRSLAAPLAAYlgsrEEILMVSGFTDDAPVreGNRRFADNWELSAQRSLTVTRTLIA-DGVPA 169
Cdd:PRK06925 120 VLFETGEADILKQAEPFLHKIGVLLSTI----PNDIKVEGHTDSRPI--STYRYPSNWELSAARASSVIRYFTSkEKLDS 193

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 896580748 170 DAVFAAAFGSEQPVSSNANEEGRARNRRVEIApIPKP 206
Cdd:PRK06925 194 SRFIAVGYADTKPVVPNTTEENMQENRRVEIV-ISDP 229
PRK09967 PRK09967
OmpA family protein;
82-200 6.40e-10

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 55.76  E-value: 6.40e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748  82 DGRIGISGSVLFALNSDQLQPEGQELLRSLAAPLAAylgsreeilmvSGFTDDApvREGNrrfADNW-ELSAQRSLTVTR 160
Cdd:PRK09967  45 DWSLGLSDAILFAKNDYKLLPESQQQIQTMAAKLAS-----------TGLTHAR--MDGH---TDNYgEDSYNEGLSLKR 108

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 896580748 161 -TLIADG------VPADAVFAAAFGSEQPVSSNANEEGRARNRRVEI 200
Cdd:PRK09967 109 aNVVADAwamggqIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAV 155
pdsO TIGR03789
proteobacterial sortase system peptidoglycan-associated protein; A newly defined histidine ...
 10-200 1.58e-09

proteobacterial sortase system peptidoglycan-associated protein; A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the pfam00691 domain family, which is the peptidoglycan-associated region of flagellar motor protein MotB, OmpA (whose N-terminal region forms an outer membrane beta barrel), and peptidoglycan-associated lipoprotein Pal. Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274783 [Multi-domain]  Cd Length: 243  Bit Score: 55.97  E-value: 1.58e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748   10 GSHAPIWAAFGDLMSVLLGAFVLILVG--------VVAVQLELSQRLDQEV--KQRQAEAKRL----QTLEQALAGPLAA 75
Cdd:TIGR03789  48 GSGALLGALVGGPVGAIIGGITGGLIGqavnndetLKQQQQHIAQQRQQMValTQKQQALEQLeaeyQQAQVHLETLQQD 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748   76 GRVTLVDGRIGISgsVLFALNSDQLQPEGQELLRSLAAPLAAylgSREEILMVSGFTDdapvREGNRRfaDNWELSAQRS 155
Cdd:TIGR03789 128 QQQLLEELALGMN--VQFRTGSSDIEPHFQPQLDEVATLMKQ---SPELKLDLSGYAD----RRGDSQ--YNQALSEQRV 196

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 896580748  156 LTVTRTLIADGVPADAVFAAAFGSEQPVSSNANEEGRARNRRVEI 200
Cdd:TIGR03789 197 LEVRSYLIKQGVDEARLTTQAFGESAPLKDEQESESDFFDRRVTL 241
motB PRK12799
flagellar motor protein MotB; Reviewed
 43-167 4.35e-07

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 49.33  E-value: 4.35e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748  43 ELSQRLDQEVKQRqaeaKRLQTLEQALAgplaagrVTLVDG--RIGISGS---VLFALNSDQLQPEGQELLRSLAaPLaa 117
Cdd:PRK12799 116 KLREKLDQLIESD----PRLKALRPHLL-------INMMDEglRIQIIDSqnrPMFKMGSAQVEPYMRDILRAIA-PI-- 181

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 896580748 118 yLGSREEILMVSGFTDDAPVREGNRRFAdNWELSAQRSLTVTRTLIADGV 167
Cdd:PRK12799 182 -LNDIPNKLSLSGHTDDLPYARGERGYS-NWELSADRANASRRELLAGGL 229
motB PRK09041
motility protein MotB;
40-172 5.59e-07

motility protein MotB;


Pssm-ID: 236365 [Multi-domain]  Cd Length: 317  Bit Score: 48.79  E-value: 5.59e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748  40 VQLELSQRLDQEVKQRQAEAKRLQTLEQAL-----AGPLAAG-----RVTLV-DG-RIGISGSV---LFALNSDQLQPEG 104
Cdd:PRK09041  97 VNKQPNIAELAQGEKERREQERLEKLKQELdqaieSNPKLRQfkpqlLIDLTqEGlRIQIVDSQnrpMFATGSAEVEPYM 176

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 896580748 105 QELLRSLAAPLAAyLGSReeiLMVSGFTDDAPVREGNRRFAdNWELSAQRSLTVTRTLIADGVPADAV 172
Cdd:PRK09041 177 RDILREIAPVLND-VPNR---ISLSGHTDATPYANGEKGYS-NWELSADRANASRRELVAGGMDEGKV 239
PRK06778 PRK06778
hypothetical protein; Validated
 92-205 2.16e-05

hypothetical protein; Validated


Pssm-ID: 235860 [Multi-domain]  Cd Length: 289  Bit Score: 44.15  E-value: 2.16e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748  92 LFALNSDQLQPegqeLLRSLAAPLAAYLGSREEILMVSGFTDDAPVREgnrRFADNWELSAQRSLTVTRTLIADGVPADA 171
Cdd:PRK06778 155 MFERGSAQIMP----FFKTLLVELAPVFDSLDNKIIITGHTDAMAYKN---NIYNNWNLSGDRALSARRVLEEAGMPEDK 227

                         90       100       110
                 ....*....|....*....|....*....|....
gi 896580748 172 VFAAAFGSEQPVSSNANEEGrARNRRVEIAPIPK 205
Cdd:PRK06778 228 VMQVSAMADQMLLDAKNPQS-AGNRRIEIMVLTK 260
PRK07034 PRK07034
hypothetical protein; Provisional
 108-200 3.18e-05

hypothetical protein; Provisional


Pssm-ID: 168775 [Multi-domain]  Cd Length: 536  Bit Score: 44.01  E-value: 3.18e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896580748 108 LRSLAAPLAAYLGSREEIlmvsGFTDDAPVRE--GNrrfaDNWELSAQRSLTVTRTLIA----DGVPADAVFAAAFGSEQ 181
Cdd:PRK07034 415 IERLGLALAPWPGDIEVI----GHTDNKPFRStsGN----NNLKLSAARASVVADKLREstqiNETHQREISAIGRGESD 486

                         90
                 ....*....|....*....
gi 896580748 182 PVSSNANEEGRARNRRVEI 200
Cdd:PRK07034 487 PLADNATEEGRKRNRRVDI 505
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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