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Conserved domains on  [gi|896582759|ref|WP_049471349|]
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MULTISPECIES: DUF3088 family protein [Stenotrophomonas]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3088 super family cl12829
Protein of unknown function (DUF3088); This family of proteins with unknown function appears ...
 8-109 3.85e-30

Protein of unknown function (DUF3088); This family of proteins with unknown function appears to be restricted to Proteobacteria.


The actual alignment was detected with superfamily member pfam11287:

Pssm-ID: 431785  Cd Length: 110  Bit Score: 103.88  E-value: 3.85e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896582759    8 KPILFLLDREFEDGQIPGQRFFCRHSLLLEGALSSIEGLDAQLDVRRIGFARPRREVIAEIGEQDQSLPKLVLPQGVHSA 87
Cdd:pfam11287   1 RDKLFLLRPGFEDPAYPGGPFYCPDCALVEGLLASFPALAERLDVERVDFPRPRAAVIALLGEENQSLPVLVLGDGAPEP 80

                          90       100
                  ....*....|....*....|..
gi 896582759   88 LASGAHKDRQYVSGAEPILAAL 109
Cdd:pfam11287  81 EDAGTHGGRRFITDTRRILEYL 102
 
Name Accession Description Interval E-value
DUF3088 pfam11287
Protein of unknown function (DUF3088); This family of proteins with unknown function appears ...
 8-109 3.85e-30

Protein of unknown function (DUF3088); This family of proteins with unknown function appears to be restricted to Proteobacteria.


Pssm-ID: 431785  Cd Length: 110  Bit Score: 103.88  E-value: 3.85e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896582759    8 KPILFLLDREFEDGQIPGQRFFCRHSLLLEGALSSIEGLDAQLDVRRIGFARPRREVIAEIGEQDQSLPKLVLPQGVHSA 87
Cdd:pfam11287   1 RDKLFLLRPGFEDPAYPGGPFYCPDCALVEGLLASFPALAERLDVERVDFPRPRAAVIALLGEENQSLPVLVLGDGAPEP 80

                          90       100
                  ....*....|....*....|..
gi 896582759   88 LASGAHKDRQYVSGAEPILAAL 109
Cdd:pfam11287  81 EDAGTHGGRRFITDTRRILEYL 102
 
Name Accession Description Interval E-value
DUF3088 pfam11287
Protein of unknown function (DUF3088); This family of proteins with unknown function appears ...
 8-109 3.85e-30

Protein of unknown function (DUF3088); This family of proteins with unknown function appears to be restricted to Proteobacteria.


Pssm-ID: 431785  Cd Length: 110  Bit Score: 103.88  E-value: 3.85e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896582759    8 KPILFLLDREFEDGQIPGQRFFCRHSLLLEGALSSIEGLDAQLDVRRIGFARPRREVIAEIGEQDQSLPKLVLPQGVHSA 87
Cdd:pfam11287   1 RDKLFLLRPGFEDPAYPGGPFYCPDCALVEGLLASFPALAERLDVERVDFPRPRAAVIALLGEENQSLPVLVLGDGAPEP 80

                          90       100
                  ....*....|....*....|..
gi 896582759   88 LASGAHKDRQYVSGAEPILAAL 109
Cdd:pfam11287  81 EDAGTHGGRRFITDTRRILEYL 102
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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