|
Name |
Accession |
Description |
Interval |
E-value |
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
3-244 |
3.70e-115 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 330.08 E-value: 3.70e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 3 LICQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVT 82
Cdd:COG1120 2 LEAENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSRRELARRIAYVP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 83 QFNQLQFDCTVEEIVLLGRTPHLSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLL 162
Cdd:COG1120 82 QEPPAPFGLTVRELVALGRYPHLGLFGRPSAEDREAVEEALERTGLEHLADRPVDELSGGERQRVLIARALAQEPPLLLL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 163 DEPTNHLDIKYQLDLLAIVKNL----KINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETITPESLQTVYGVQSQV 238
Cdd:COG1120 162 DEPTSHLDLAHQLEVLELLRRLarerGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEVLTPELLEEVYGVEARV 241
|
....*.
gi 896617071 239 TWTDDQ 244
Cdd:COG1120 242 IEDPVT 247
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
3-238 |
2.76e-93 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 274.69 E-value: 2.76e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 3 LICQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVT 82
Cdd:COG4559 2 LEAENLSVRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAWSPWELARRRAVLP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 83 QFNQLQFDCTVEEIVLLGRTPHlsflQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQ------- 155
Cdd:COG4559 82 QHSSLAFPFTVEEVVALGRAPH----GSSAAQDRQIVREALALVGLAHLAGRSYQTLSGGEQQRVQLARVLAQlwepvdg 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 156 EPTLLLLDEPTNHLDIKYQLDLLAIVKNL---KINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETITPESLQTVY 232
Cdd:COG4559 158 GPRWLFLDEPTSALDLAHQHAVLRLARQLarrGGGVVAVLHDLNLAAQYADRILLLHQGRLVAQGTPEEVLTDELLERVY 237
|
....*.
gi 896617071 233 GVQSQV 238
Cdd:COG4559 238 GADLRV 243
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
3-239 |
3.94e-80 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 241.21 E-value: 3.94e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 3 LICQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVT 82
Cdd:PRK13548 3 LEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 83 QFNQLQFDCTVEEIVLLGRTPHlsflQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQ------E 156
Cdd:PRK13548 83 QHSSLSFPFTVEEVVAMGRAPH----GLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQlwepdgP 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 157 PTLLLLDEPTNHLDIKYQLDLLAIVKNL----KINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETITPESLQTVY 232
Cdd:PRK13548 159 PRWLLLDEPTSALDLAHQHHVLRLARQLaherGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLTPETLRRVY 238
|
....*..
gi 896617071 233 GVQSQVT 239
Cdd:PRK13548 239 GADVLVQ 245
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
5-217 |
1.78e-72 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 219.23 E-value: 1.78e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 5 CQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQf 84
Cdd:cd03214 2 VENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 85 nqlqfdctveeivllgrtphlsflqkekerdyalvhdALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDE 164
Cdd:cd03214 81 -------------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDE 123
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 896617071 165 PTNHLDIKYQLDLLAIVKNLK----INVLAVLHDIQLACRYSDYLYLMKEGEILYQG 217
Cdd:cd03214 124 PTSHLDIAHQIELLELLRRLArergKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
3-233 |
7.28e-71 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 217.26 E-value: 7.28e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 3 LICQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLehwslKETAKQMAVVT 82
Cdd:COG1121 7 IELENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPP-----RRARRRIGYVP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 83 QFNQL--QFDCTVEEIVLLGRTPHLSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLL 160
Cdd:COG1121 82 QRAEVdwDFPITVRDVVLMGRYGRRGLFRRPSRADREAVDEALERVGLEDLADRPIGELSGGQQQRVLLARALAQDPDLL 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 896617071 161 LLDEPTNHLDIKYQLDLLAIVKNLK---INVLAVLHDIQLACRYSDYLYLMKeGEILYQGTPKETITPESLQTVYG 233
Cdd:COG1121 162 LLDEPFAGVDAATEEALYELLRELRregKTILVVTHDLGAVREYFDRVLLLN-RGLVAHGPPEEVLTPENLSRAYG 236
|
|
| F420-0_ABC_ATP |
TIGR03873 |
proposed F420-0 ABC transporter, ATP-binding protein; This small clade of ABC-type transporter ... |
12-238 |
5.11e-70 |
|
proposed F420-0 ABC transporter, ATP-binding protein; This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Pssm-ID: 163585 [Multi-domain] Cd Length: 256 Bit Score: 215.45 E-value: 5.11e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 12 LGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQFNQLQFDC 91
Cdd:TIGR03873 11 AGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 92 TVEEIVLLGRTPHLSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDI 171
Cdd:TIGR03873 91 TVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDV 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 172 KYQLDLLAIVKNL---KINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETITPESLQTVYGVQSQV 238
Cdd:TIGR03873 171 RAQLETLALVRELaatGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTPALIRAVYGVDATV 240
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
1-238 |
1.62e-66 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 206.79 E-value: 1.62e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 1 MDLICQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAV 80
Cdd:PRK11231 1 MTLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 81 VTQFNQLQFDCTVEEIVLLGRTPHLSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLL 160
Cdd:PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 161 LLDEPTNHLDIKYQLDLLAIVKNLKIN---VLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETITPESLQTVYGVQSQ 237
Cdd:PRK11231 161 LLDEPTTYLDINHQVELMRLMRELNTQgktVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTPGLLRTVFDVEAE 240
|
.
gi 896617071 238 V 238
Cdd:PRK11231 241 I 241
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
5-217 |
2.82e-61 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 191.59 E-value: 2.82e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 5 CQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEhwslkETAKQMAVVTQf 84
Cdd:cd03235 2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYVPQ- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 85 nQLQFDC----TVEEIVLLGRTPHLSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLL 160
Cdd:cd03235 76 -RRSIDRdfpiSVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLL 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 161 LLDEPTNHLDIKYQLDLLAIVKNLK---INVLAVLHDIQLACRYSDYLYLMKeGEILYQG 217
Cdd:cd03235 155 LLDEPFAGVDPKTQEDIYELLRELRregMTILVVTHDLGLVLEYFDRVLLLN-RTVVASG 213
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
6-250 |
3.83e-60 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 190.29 E-value: 3.83e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 6 QDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQFN 85
Cdd:COG4604 5 KNVSKRYGGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTPSRELAKRLAILRQEN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 86 QLQFDCTVEEIVLLGRTPH----LSflqkekERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLL 161
Cdd:COG4604 85 HINSRLTVRELVAFGRFPYskgrLT------AEDREIIDEAIAYLDLEDLADRYLDELSGGQRQRAFIAMVLAQDTDYVL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 162 LDEPTNHLDIKYQLDLLAI----VKNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETITPESLQTVYGVQSQ 237
Cdd:COG4604 159 LDEPLNNLDMKHSVQMMKLlrrlADELGKTVVIVLHDINFASCYADHIVAMKDGRVVAQGTPEEIITPEVLSDIYDTDIE 238
|
250
....*....|...
gi 896617071 238 VTWTDDQQAMIHY 250
Cdd:COG4604 239 VEEIDGKRICVYF 251
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
7-239 |
5.61e-60 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 194.29 E-value: 5.61e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 7 DIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQFNQ 86
Cdd:PRK09536 8 DLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTS 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 87 LQFDCTVEEIVLLGRTPHLSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPT 166
Cdd:PRK09536 88 LSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPT 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 896617071 167 NHLDIKYQLDLLAIVKNLKIN---VLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETITPESLQTVYGVQSQVT 239
Cdd:PRK09536 168 ASLDINHQVRTLELVRRLVDDgktAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLRAAFDARTAVG 243
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
6-238 |
2.85e-53 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 173.25 E-value: 2.85e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 6 QDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQFN 85
Cdd:PRK10253 11 EQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 86 QLQFDCTVEEIVLLGRTPHLSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEP 165
Cdd:PRK10253 91 TTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEP 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 896617071 166 TNHLDIKYQLDLLAIVKNLK----INVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETITPESLQTVYGVQSQV 238
Cdd:PRK10253 171 TTWLDISHQIDLLELLSELNrekgYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAELIERIYGLRCMI 247
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
6-234 |
8.01e-53 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 171.89 E-value: 8.01e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 6 QDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQFN 85
Cdd:PRK10575 15 RNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 86 QLQFDCTVEEIVLLGRTPHLSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEP 165
Cdd:PRK10575 95 PAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEP 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 896617071 166 TNHLDIKYQLDLLAIVKNLK----INVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETITPESLQTVYGV 234
Cdd:PRK10575 175 TSALDIAHQVDVLALVHRLSqergLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGETLEQIYGI 247
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
13-224 |
5.12e-51 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 165.97 E-value: 5.12e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQF--NQLqFD 90
Cdd:COG1122 12 GGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKNLRELRRKVGLVFQNpdDQL-FA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 91 CTVEEIVLLGrtP-HLSFLQKE-KERdyalVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNH 168
Cdd:COG1122 91 PTVEEDVAFG--PeNLGLPREEiRER----VEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAMEPEVLVLDEPTAG 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 896617071 169 LDIKYQLDLLAIVKNLK---INVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETIT 224
Cdd:COG1122 165 LDPRGRRELLELLKRLNkegKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREVFS 223
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
13-233 |
1.54e-50 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 165.62 E-value: 1.54e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAK---QMAVVTQ-FN--- 85
Cdd:COG3638 14 GGTPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTALRGRALRRlrrRIGMIFQqFNlvp 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 86 QLqfdcTVEEIVLLGRTPHLSFLQ----KEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLL 161
Cdd:COG3638 94 RL----SVLTNVLAGRLGRTSTWRsllgLFPPEDRERALEALERVGLADKAYQRADQLSGGQQQRVAIARALVQEPKLIL 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 896617071 162 LDEPTNHLDIK--YQ-LDLLA-IVKNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKEtITPESLQTVYG 233
Cdd:COG3638 170 ADEPVASLDPKtaRQvMDLLRrIAREDGITVVVNLHQVDLARRYADRIIGLRDGRVVFDGPPAE-LTDAVLREIYG 244
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
9-212 |
2.45e-48 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 158.78 E-value: 2.45e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 9 HFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQFNQLQ 88
Cdd:cd03225 8 SYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 89 FDC-TVEEIVLLGrtphLSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTN 167
Cdd:cd03225 88 FFGpTVEEEVAFG----LENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 896617071 168 HLDIKYQLDLLAIVKNLK---INVLAVLHDIQLACRYSDYLYLMKEGE 212
Cdd:cd03225 164 GLDPAGRRELLELLKKLKaegKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
6-221 |
1.72e-47 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 157.33 E-value: 1.72e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 6 QDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSlKETAKQMAVVTQFN 85
Cdd:COG4555 5 ENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEP-REARRQIGVLPDER 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 86 QLQFDCTVEEIVLLGRTPHLSFLQKEKERDYALVHdalvKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEP 165
Cdd:COG4555 84 GLYDRLTVRENIRYFAELYGLFDEELKKRIEELIE----LLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLLDEP 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 896617071 166 TNHLDIKYQLDLLAIVKNLKINVLAVL---HDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:COG4555 160 TNGLDVMARRLLREILRALKKEGKTVLfssHIMQEVEALCDRVVILHKGKVVAQGSLDE 218
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
6-242 |
2.30e-47 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 157.17 E-value: 2.30e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 6 QDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQE-KADKGLISLDGKPLEHWSLKETAKQMAVVTQF 84
Cdd:COG1119 7 RNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLpPTYGNDVRLFGERRGGEDVWELRKRIGLVSPA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 85 NQLQF--DCTVEEIVL------LGRTPHLSflqkekERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQE 156
Cdd:COG1119 87 LQLRFprDETVLDVVLsgffdsIGLYREPT------DEQRERARELLELLGLAHLADRPFGTLSQGEQRRVLIARALVKD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 157 PTLLLLDEPTNHLDIKYQLDLLAIVKNL----KINVLAVLHDIQ--LACrYSDYLyLMKEGEILYQGTPKETITPESLQT 230
Cdd:COG1119 161 PELLILDEPTAGLDLGARELLLALLDKLaaegAPTLVLVTHHVEeiPPG-ITHVL-LLKDGRVVAAGPKEEVLTSENLSE 238
|
250
....*....|..
gi 896617071 231 VYGVQSQVTWTD 242
Cdd:COG1119 239 AFGLPVEVERRD 250
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
13-232 |
3.62e-45 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 151.57 E-value: 3.62e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKP---LEHWSLKETAKQMAVVTQFNQLQF 89
Cdd:cd03256 12 NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDinkLKGKALRQLRRQIGMIFQQFNLIE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 90 DCTVEEIVLLGRTPHLSFLQ------KEKERDYALvhDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLD 163
Cdd:cd03256 92 RLSVLENVLSGRLGRRSTWRslfglfPKEEKQRAL--AALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILAD 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 896617071 164 EPTNHLDIKYQL----DLLAIVKNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKEtITPESLQTVY 232
Cdd:cd03256 170 EPVASLDPASSRqvmdLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAE-LTDEVLDEIY 241
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
3-234 |
8.85e-45 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 151.52 E-value: 8.85e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 3 LICQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKAD--------KGLISLDGKPLEHWSLKET 74
Cdd:PRK13547 2 LTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGgaprgarvTGDVTLNGEPLAAIDAPRL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 75 AKQMAVVTQFNQLQFDCTVEEIVLLGRTPHLSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALA 154
Cdd:PRK13547 82 ARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 155 Q---------EPTLLLLDEPTNHLDIKYQLDLLAIVKNL----KINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:PRK13547 162 QlwpphdaaqPPRYLLLDEPTAALDLAHQHRLLDTVRRLardwNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPAD 241
|
250
....*....|...
gi 896617071 222 TITPESLQTVYGV 234
Cdd:PRK13547 242 VLTPAHIARCYGF 254
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
13-221 |
1.11e-43 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 147.52 E-value: 1.11e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSlKETAKQMAVVTQFNQLQFDCT 92
Cdd:COG1131 11 GDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDP-AEVRRRIGYVPQEPALYPDLT 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 93 VEEIVLLgrtpHLSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIK 172
Cdd:COG1131 90 VRENLRF----FARLYGLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILDEPTSGLDPE 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 896617071 173 YQLDLLAIVKNLKINVLAVL---HDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:COG1131 166 ARRELWELLRELAAEGKTVLlstHYLEEAERLCDRVAIIDKGRIVADGTPDE 217
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
11-213 |
1.23e-42 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 144.17 E-value: 1.23e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 11 GLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETA----KQMAVVTQFNQ 86
Cdd:cd03255 13 GGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAafrrRHIGFVFQSFN 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 87 LQFDCTVEEIVLLGrtphLSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPT 166
Cdd:cd03255 93 LLPDLTALENVELP----LLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPT 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 896617071 167 NHLDIK---YQLDLL-AIVKNLKINVLAVLHDIQLAcRYSDYLYLMKEGEI 213
Cdd:cd03255 169 GNLDSEtgkEVMELLrELNKEAGTTIVVVTHDPELA-EYADRIIELRDGKI 218
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
6-221 |
1.16e-41 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 142.43 E-value: 1.16e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 6 QDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWS---LKETAKQMAVVT 82
Cdd:COG1127 9 RNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSekeLYELRRRIGMLF 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 83 QFNQLqFDC-TVEEIVLLGRTPHLSFLQKEKERdyaLVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLL 161
Cdd:COG1127 89 QGGAL-FDSlTVFENVAFPLREHTDLSEAEIRE---LVLEKLELVGLPGAADKMPSELSGGMRKRVALARALALDPEILL 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 896617071 162 LDEPTNHLDIK-----YQLdLLAIVKNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:COG1127 165 YDEPTAGLDPItsaviDEL-IRELRDELGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEE 228
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
13-221 |
1.46e-41 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 148.51 E-value: 1.46e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWS---LKETAKQMAVVTQFNQLQF 89
Cdd:COG1123 276 GGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSrrsLRELRRRVQMVFQDPYSSL 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 90 DC--TVEEIVllGRTPHLSFLQKEKERDyALVHDALVKVDMLEKKTRLY-SSLSGGEKQRVLLARALAQEPTLLLLDEPT 166
Cdd:COG1123 356 NPrmTVGDII--AEPLRLHGLLSRAERR-ERVAELLERVGLPPDLADRYpHELSGGQRQRVAIARALALEPKLLILDEPT 432
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 896617071 167 NHLDIKYQ---LDLLA-IVKNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:COG1123 433 SALDVSVQaqiLNLLRdLQRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPTEE 491
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
9-233 |
3.18e-40 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 138.97 E-value: 3.18e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 9 HFGLGeKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWS---LKETAKQMAVVTQFN 85
Cdd:TIGR02315 10 VYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRgkkLRKLRRRIGMIFQHY 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 86 QLQFDCTVEEIVLLGRTPHLSFLQKE----KERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLL 161
Cdd:TIGR02315 89 NLIERLTVLENVLHGRLGYKPTWRSLlgrfSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLIL 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 896617071 162 LDEPTNHLDIKYQL----DLLAIVKNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKEtITPESLQTVYG 233
Cdd:TIGR02315 169 ADEPIASLDPKTSKqvmdYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSE-LDDEVLRHIYG 243
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
6-213 |
4.07e-40 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 137.25 E-value: 4.07e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 6 QDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQFN 85
Cdd:COG4619 4 EGLSFRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAMPPPEWRRQVAYVPQEP 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 86 QLqFDCTVEEivllgrtpHLS--FLQKEKERDYALVHDALVKV----DMLEKKTrlySSLSGGEKQRVLLARALAQEPTL 159
Cdd:COG4619 84 AL-WGGTVRD--------NLPfpFQLRERKFDRERALELLERLglppDILDKPV---ERLSGGERQRLALIRALLLQPDV 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 896617071 160 LLLDEPTNHLDIKYQLDLLAIVKNLKIN----VLAVLHDIQLACRYSDYLYLMKEGEI 213
Cdd:COG4619 152 LLLDEPTSALDPENTRRVEELLREYLAEegraVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
3-217 |
1.14e-39 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 136.50 E-value: 1.14e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 3 LICQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAkqMAVVT 82
Cdd:cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRN--IGMVF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 83 QFNQLQFDCTVEEIVLLGRTPHLSFLQKEKERdyalVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLL 162
Cdd:cd03259 79 QDYALFPHLTVAENIAFGLKLRGVPKAEIRAR----VRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLL 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 896617071 163 DEPTNHLD--IKYQL--DLLAIVKNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQG 217
Cdd:cd03259 155 DEPLSALDakLREELreELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
13-221 |
1.33e-39 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 136.98 E-value: 1.33e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHwsLKETAKQMAVVTQ----FNQLq 88
Cdd:cd03300 11 GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITN--LPPHKRPVNTVFQnyalFPHL- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 89 fdcTVEEIVLLGrtphLSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNH 168
Cdd:cd03300 88 ---TVFENIAFG----LRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGA 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 896617071 169 LDIK----YQLDLLAIVKNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:cd03300 161 LDLKlrkdMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEE 217
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
5-224 |
1.66e-39 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 136.48 E-value: 1.66e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 5 CQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWS---LKETAKQMAVV 81
Cdd:cd03261 3 LRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSeaeLYRLRRRMGML 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 82 TQFNQLQFDCTVEEIVLLGRTPHLSFLQKEKERdyaLVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLL 161
Cdd:cd03261 83 FQSGALFDSLTVFENVAFPLREHTRLSEEEIRE---IVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 896617071 162 LDEPTNHLDIKYQLDLLAIVKNLK----INVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETIT 224
Cdd:cd03261 160 YDEPTAGLDPIASGVIDDLIRSLKkelgLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
13-213 |
4.12e-39 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 135.18 E-value: 4.12e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAK---QMAVVTQFNQLQF 89
Cdd:COG2884 13 GGREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRREIPYlrrRIGVVFQDFRLLP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 90 DCTVEEIVLLGrtphLSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHL 169
Cdd:COG2884 93 DRTVYENVALP----LRVTGKSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAIARALVNRPELLLADEPTGNL 168
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 896617071 170 DIKYQLDLLAIVKnlKIN-----VLAVLHDIQLACRYSDYLYLMKEGEI 213
Cdd:COG2884 169 DPETSWEIMELLE--EINrrgttVLIATHDLELVDRMPKRVLELEDGRL 215
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
3-221 |
8.97e-39 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 134.87 E-value: 8.97e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 3 LICQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQ-MAVV 81
Cdd:cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLgIGRT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 82 TQFNQLQFDCTVEEIVLLGRTPH------LSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQ 155
Cdd:cd03219 81 FQIPRLFPELTVLENVMVAAQARtgsgllLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALAT 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 896617071 156 EPTLLLLDEPT---NHLDIKYQLDLLAIVKNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:cd03219 161 DPKLLLLDEPAaglNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDE 229
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
18-248 |
9.27e-39 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 134.97 E-value: 9.27e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 18 LKGVSLRVE-GHQFHtILGPNGSGKTSLLKL---LYRQEkadkGLISLDGKPLEHWSLKETAKQMAVVTQFNQLQFDCTV 93
Cdd:COG4138 12 LGPISAQVNaGELIH-LIGPNGAGKSTLLARmagLLPGQ----GEILLNGRPLSDWSAAELARHRAYLSQQQSPPFAMPV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 94 EEIVLLGRTPHLSflqkEKERDYALVH--DALvkvdMLEKK-TRLYSSLSGGEKQRVLLARALAQ-------EPTLLLLD 163
Cdd:COG4138 87 FQYLALHQPAGAS----SEAVEQLLAQlaEAL----GLEDKlSRPLTQLSGGEWQRVRLAAVLLQvwptinpEGQLLLLD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 164 EPTNHLDIKYQLDLLAIVKNLK---INVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETITPESLQTVYGVQSQVTW 240
Cdd:COG4138 159 EPMNSLDVAQQAALDRLLRELCqqgITVVMSSHDLNHTLRHADRVWLLKQGKLVASGETAEVMTPENLSEVFGVKFRRLE 238
|
....*...
gi 896617071 241 TDDQQAMI 248
Cdd:COG4138 239 VEGHRWLI 246
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
18-167 |
1.06e-38 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 132.00 E-value: 1.06e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 18 LKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQFNQLQFDCTVEEIV 97
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKEIGYVFQDPQLFPRLTVRENL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 896617071 98 LLGRtpHLSFLQKEKERDYAlvHDALVKVDMLEKKTRL----YSSLSGGEKQRVLLARALAQEPTLLLLDEPTN 167
Cdd:pfam00005 81 RLGL--LLKGLSKREKDARA--EEALEKLGLGDLADRPvgerPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
2-221 |
2.87e-38 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 136.38 E-value: 2.87e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 2 DLICQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHwsLKETAKQMAVV 81
Cdd:COG3842 5 ALELENVSKRYGDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTG--LPPEKRNVGMV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 82 TQ----FNQLqfdcTVEEIVLLGrtphLSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEP 157
Cdd:COG3842 83 FQdyalFPHL----TVAENVAFG----LRMRGVPKAEIRARVAELLELVGLEGLADRYPHQLSGGQQQRVALARALAPEP 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 896617071 158 TLLLLDEPTNHLDIK----YQLDLLAIVKNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:COG3842 155 RVLLLDEPLSALDAKlreeMREELRRLQRELGITFIYVTHDQEEALALADRIAVMNDGRIEQVGTPEE 222
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
8-217 |
6.56e-38 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 132.24 E-value: 6.56e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 8 IHF--GLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWS---LKETAKQMAVVT 82
Cdd:cd03257 9 VSFptGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSrrlRKIRRKEIQMVF 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 83 Q--FNQLQFDCTVEEIvlLGRTPHLSFLQKEKERDYALVHDALVKVDMLEKKTRLY-SSLSGGEKQRVLLARALAQEPTL 159
Cdd:cd03257 89 QdpMSSLNPRMTIGEQ--IAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYpHELSGGQRQRVAIARALALNPKL 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 896617071 160 LLLDEPTNHLDIKYQ---LDLLA-IVKNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQG 217
Cdd:cd03257 167 LIADEPTSALDVSVQaqiLDLLKkLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
2-221 |
1.46e-37 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 139.20 E-value: 1.46e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 2 DLICQDIHFGLG--EKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMA 79
Cdd:COG2274 473 DIELENVSFRYPgdSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQIDPASLRRQIG 552
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 80 VVTQFNQLqFDCTVEEIVLLGRtPHLSFlqkekERdyalVHDALVKVDMLEK--------KTRLY---SSLSGGEKQRVL 148
Cdd:COG2274 553 VVLQDVFL-FSGTIRENITLGD-PDATD-----EE----IIEAARLAGLHDFiealpmgyDTVVGeggSNLSGGQRQRLA 621
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 896617071 149 LARALAQEPTLLLLDEPTNHLDIKYQLDLLAIVKNLKIN--VLAVLHDIQLAcRYSDYLYLMKEGEILYQGTPKE 221
Cdd:COG2274 622 IARALLRNPRILILDEATSALDAETEAIILENLRRLLKGrtVIIIAHRLSTI-RLADRIIVLDKGRIVEDGTHEE 695
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
13-211 |
1.85e-37 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 132.14 E-value: 1.85e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEhwslkETAKQMAVVTQ----FNQLq 88
Cdd:COG1116 22 GGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVT-----GPGPDRGVVFQepalLPWL- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 89 fdcTVEEIVLLGrtphLSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNH 168
Cdd:COG1116 96 ---TVLDNVALG----LELRGVPKAERRERARELLELVGLAGFEDAYPHQLSGGMRQRVAIARALANDPEVLLMDEPFGA 168
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 896617071 169 LD----IKYQLDLLAIVKNLKINVLAVLHDIQLACRYSDYLYLMKEG 211
Cdd:COG1116 169 LDaltrERLQDELLRLWQETGKTVLFVTHDVDEAVFLADRVVVLSAR 215
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
3-221 |
3.31e-37 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 131.08 E-value: 3.31e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 3 LICQDIH--FGLG--EKKILKGVSLRVE-GHQFhTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQ 77
Cdd:COG1124 2 LEVRNLSvsYGQGgrRVPVLKDVSLEVApGESF-GLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTRRRRKAFRRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 78 MAVVTQ-----FNQLQfdcTVEEIVllgRTP-HLSFLQKEKERdyalVHDALVKVDMLEK-KTRLYSSLSGGEKQRVLLA 150
Cdd:COG1124 81 VQMVFQdpyasLHPRH---TVDRIL---AEPlRIHGLPDREER----IAELLEQVGLPPSfLDRYPHQLSGGQRQRVAIA 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 896617071 151 RALAQEPTLLLLDEPTNHLDIKYQ---LDLLA-IVKNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:COG1124 151 RALILEPELLLLDEPTSALDVSVQaeiLNLLKdLREERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVAD 225
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
6-221 |
3.99e-37 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 130.38 E-value: 3.99e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 6 QDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKA-----DKGLISLDGKPLEHWSLKETA--KQM 78
Cdd:cd03260 4 RDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLipgapDEGEVLLDGKDIYDLDVDVLElrRRV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 79 AVVTQfNQLQFDCTVEEIVLLGRTPHLSflQKEKERDyALVHDALVKVDMLEK-KTRLY-SSLSGGEKQRVLLARALAQE 156
Cdd:cd03260 84 GMVFQ-KPNPFPGSIYDNVAYGLRLHGI--KLKEELD-ERVEEALRKAALWDEvKDRLHaLGLSGGQQQRLCLARALANE 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 896617071 157 PTLLLLDEPTNHLDIKYQLDLLAIVKNLK--INVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:cd03260 160 PEVLLLDEPTSALDPISTAKIEELIAELKkeYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
3-213 |
8.90e-37 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 129.39 E-value: 8.90e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 3 LICQDIH--FGLGEKK--ILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAK-- 76
Cdd:COG1136 5 LELRNLTksYGTGEGEvtALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSLSERELARlr 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 77 --QMAVVTQFNQLQFDCTVEEIVLLGrtphLSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALA 154
Cdd:COG1136 85 rrHIGFVFQFFNLLPELTALENVALP----LLLAGVSRKERRERARELLERVGLGDRLDHRPSQLSGGQQQRVAIARALV 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 896617071 155 QEPTLLLLDEPTNHLDIK-----YQLdLLAIVKNLKINVLAVLHDIQLAcRYSDYLYLMKEGEI 213
Cdd:COG1136 161 NRPKLILADEPTGNLDSKtgeevLEL-LRELNRELGTTIVMVTHDPELA-ARADRVIRLRDGRI 222
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
6-212 |
3.82e-36 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 125.43 E-value: 3.82e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 6 QDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQfn 85
Cdd:cd00267 3 ENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ-- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 86 qlqfdctveeivllgrtphlsflqkekerdyalvhdalvkvdmlekktrlyssLSGGEKQRVLLARALAQEPTLLLLDEP 165
Cdd:cd00267 81 -----------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEP 107
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 896617071 166 TNHLDIKYQLDLLAIVKNL---KINVLAVLHDIQLACRYSDYLYLMKEGE 212
Cdd:cd00267 108 TSGLDPASRERLLELLRELaeeGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
8-221 |
6.13e-36 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 127.85 E-value: 6.13e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 8 IHFG-LgekKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQ-MAVVTQFN 85
Cdd:COG0411 12 KRFGgL---VAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITGLPPHRIARLgIARTFQNP 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 86 QLQFDCTVEEIVLLGRTPHL--SFLQ---------KEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALA 154
Cdd:COG0411 89 RLFPELTVLENVLVAAHARLgrGLLAallrlprarREEREARERAEELLERVGLADRADEPAGNLSYGQQRRLEIARALA 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 896617071 155 QEPTLLLLDEPT---NHLDIKYQLDLL-AIVKNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:COG0411 169 TEPKLLLLDEPAaglNPEETEELAELIrRLRDERGITILLIEHDMDLVMGLADRIVVLDFGRVIAEGTPAE 239
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
13-221 |
9.24e-36 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 127.93 E-value: 9.24e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDG-KPLEHWSLKETAKQMAVVTQFNQLQFDC 91
Cdd:TIGR04520 13 SEKPALKNVSLSIEKGEFVAIIGHNGSGKSTLAKLLNGLLLPTSGKVTVDGlDTLDEENLWEIRKKVGMVFQNPDNQFVG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 92 -TVEEIVLLG----RTPHlsflQKEKERdyalVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPT 166
Cdd:TIGR04520 93 aTVEDDVAFGlenlGVPR----EEMRKR----VDEALKLVGMEDFRDREPHLLSGGQKQRVAIAGVLAMRPDIIILDEAT 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 896617071 167 NHLDIKYQLDLLAIVKNLK----INVLAVLHDIQLAcRYSDYLYLMKEGEILYQGTPKE 221
Cdd:TIGR04520 165 SMLDPKGRKEVLETIRKLNkeegITVISITHDMEEA-VLADRVIVMNKGKIVAEGTPRE 222
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
18-248 |
9.99e-36 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 128.08 E-value: 9.99e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 18 LKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHwSLKETAkqMAVVTQFNQL--QFDCTVEE 95
Cdd:PRK15056 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ-ALQKNL--VAYVPQSEEVdwSFPVLVED 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 96 IVLLGRTPHLSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIKYQL 175
Cdd:PRK15056 100 VVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEA 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 896617071 176 DLLAIVKNLK---INVLAVLHDIQLACRYSDYLYLMKeGEILYQGTPKETITPESLQTVY-GVQSQVTWTDDQQAMI 248
Cdd:PRK15056 180 RIISLLRELRdegKTMLVSTHNLGSVTEFCDYTVMVK-GTVLASGPTETTFTAENLELAFsGVLRHVALNGSEESII 255
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
2-221 |
2.19e-35 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 132.20 E-value: 2.19e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 2 DLICQDIHFGL--GEKKILKGVSLRVE-GHqfHT-ILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQ 77
Cdd:COG4987 333 SLELEDVSFRYpgAGRPVLDGLSLTLPpGE--RVaIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDLDEDDLRRR 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 78 MAVVTQFNQLqFDCTVEEIVLLGRtPHLSflqkEKErdyalVHDALVKV---DMLEKK-----TRLY---SSLSGGEKQR 146
Cdd:COG4987 411 IAVVPQRPHL-FDTTLRENLRLAR-PDAT----DEE-----LWAALERVglgDWLAALpdgldTWLGeggRRLSGGERRR 479
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 896617071 147 VLLARALAQEPTLLLLDEPTNHLDIK--YQL--DLLAIVKNlKInVLAVLHDIQLACRYsDYLYLMKEGEILYQGTPKE 221
Cdd:COG4987 480 LALARALLRDAPILLLDEPTEGLDAAteQALlaDLLEALAG-RT-VLLITHRLAGLERM-DRILVLEDGRIVEQGTHEE 555
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
2-221 |
2.41e-35 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 132.19 E-value: 2.41e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 2 DLICQDIHFGL-GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAV 80
Cdd:COG4988 336 SIELEDVSFSYpGGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDLDPASWRRQIAW 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 81 VTQFNQLqFDCTVEEIVLLGRTphlsflqkekERDYALVHDALVKVDMLEKKTRLY-----------SSLSGGEKQRVLL 149
Cdd:COG4988 416 VPQNPYL-FAGTIRENLRLGRP----------DASDEELEAALEAAGLDEFVAALPdgldtplgeggRGLSGGQAQRLAL 484
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 896617071 150 ARALAQEPTLLLLDEPTNHLDIKYQLDLLAIVKNLKIN--VLAVLHDIQLAcRYSDYLYLMKEGEILYQGTPKE 221
Cdd:COG4988 485 ARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAKGrtVILITHRLALL-AQADRILVLDDGRIVEQGTHEE 557
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
13-221 |
2.72e-35 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 125.88 E-value: 2.72e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLeHWSLKETAK---QMAVVTQ-FNqLq 88
Cdd:COG1126 12 GDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDL-TDSKKDINKlrrKVGMVFQqFN-L- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 89 FdctveeivllgrtPHLSFLQ-------------KEKERDYALvhDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQ 155
Cdd:COG1126 89 F-------------PHLTVLEnvtlapikvkkmsKAEAEERAM--ELLERVGLADKADAYPAQLSGGQQQRVAIARALAM 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 896617071 156 EPTLLLLDEPTNHLD---IKyqlDLLAIVKNL---KINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:COG1126 154 EPKVMLFDEPTSALDpelVG---EVLDVMRDLakeGMTMVVVTHEMGFAREVADRVVFMDGGRIVEEGPPEE 222
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
3-212 |
4.96e-35 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 123.26 E-value: 4.96e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 3 LICQDIHFGLG--EKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAV 80
Cdd:cd03228 1 IEFKNVSFSYPgrPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 81 VTQFNQLqFDCTVEEIVLlgrtphlsflqkekerdyalvhdalvkvdmlekktrlysslSGGEKQRVLLARALAQEPTLL 160
Cdd:cd03228 81 VPQDPFL-FSGTIRENIL-----------------------------------------SGGQRQRIAIARALLRDPPIL 118
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 896617071 161 LLDEPTNHLDIKYQLDLLAIVKNLKIN--VLAVLHDIQLAcRYSDYLYLMKEGE 212
Cdd:cd03228 119 ILDEATSALDPETEALILEALRALAKGktVIVIAHRLSTI-RDADRIIVLDDGR 171
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
3-213 |
9.18e-35 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 122.51 E-value: 9.18e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 3 LICQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLeHWSLKETAKQMAVVT 82
Cdd:cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDI-KKEPEEVKRRIGYLP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 83 QFNQLQFDCTVEEIVllgrtphlsflqkekerdyalvhdalvkvdmlekktrlysSLSGGEKQRVLLARALAQEPTLLLL 162
Cdd:cd03230 80 EEPSLYENLTVRENL----------------------------------------KLSGGMKQRLALAQALLHDPELLIL 119
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 896617071 163 DEPTNHLDIKYQLDLLAIVKNLKINVLAVL---HDIQLACRYSDYLYLMKEGEI 213
Cdd:cd03230 120 DEPTSGLDPESRREFWELLRELKKEGKTILlssHILEEAERLCDRVAILNNGRI 173
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
1-221 |
1.07e-34 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 127.19 E-value: 1.07e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 1 MDLICQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLE-HWSLKEtaKQMA 79
Cdd:COG1118 1 MSIEVRNISKRFGSFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRDLFtNLPPRE--RRVG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 80 VVTQ----FNQLqfdcTVEEIVLLGrtphLSFLQKEKERDYALVHD--ALVKVDMLEKktRLYSSLSGGEKQRVLLARAL 153
Cdd:COG1118 79 FVFQhyalFPHM----TVAENIAFG----LRVRPPSKAEIRARVEEllELVQLEGLAD--RYPSQLSGGQRQRVALARAL 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 896617071 154 AQEPTLLLLDEPTNHLDIK--YQLD--LLAIVKNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:COG1118 149 AVEPEVLLLDEPFGALDAKvrKELRrwLRRLHDELGGTTVFVTHDQEEALELADRVVVMNQGRIEQVGTPDE 220
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
6-221 |
1.11e-34 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 123.70 E-value: 1.11e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 6 QDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQ-MAVVTQ- 83
Cdd:cd03224 4 ENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAgIGYVPEg 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 84 ---FNQLqfdcTVEEIVLLGRTPhlsFLQKEKERDYALVHDALVKVDmlEKKTRLYSSLSGGEKQRVLLARALAQEPTLL 160
Cdd:cd03224 84 rriFPEL----TVEENLLLGAYA---RRRAKRKARLERVYELFPRLK--ERRKQLAGTLSGGEQQMLAIARALMSRPKLL 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 896617071 161 LLDEPTNHLDIKYQLDLLAIVKNLK---INVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:cd03224 155 LLDEPSEGLAPKIVEEIFEAIRELRdegVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAE 218
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
9-208 |
1.36e-34 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 123.35 E-value: 1.36e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 9 HFGLG--EKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPlehwsLKETAKQMAVVTQ--- 83
Cdd:cd03293 9 TYGGGggAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEP-----VTGPGPDRGYVFQqda 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 84 -FNQLqfdcTVEEIVLLGrtphLSFLQKEKERDYALVHDALVKVDmLEKKTRLY-SSLSGGEKQRVLLARALAQEPTLLL 161
Cdd:cd03293 84 lLPWL----TVLDNVALG----LELQGVPKAEARERAEELLELVG-LSGFENAYpHQLSGGMRQRVALARALAVDPDVLL 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 896617071 162 LDEPTNHLDI----KYQLDLLAIVKNLKINVLAVLHDIQLACRYSDYLYLM 208
Cdd:cd03293 155 LDEPFSALDAltreQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVL 205
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
8-231 |
1.43e-34 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 129.64 E-value: 1.43e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 8 IHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYR---QEKADKGLISLDGKPLEHWSLKETAKQMAVVTQF 84
Cdd:COG1123 12 VRYPGGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGllpHGGRISGEVLLDGRDLLELSEALRGRRIGMVFQD 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 85 NQLQFDC-TVEEIVLLGrtphLSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLD 163
Cdd:COG1123 92 PMTQLNPvTVGDQIAEA----LENLGLSRAEARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMALALDPDLLIAD 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 896617071 164 EPTNHLDIKYQLDLLAIVKNLK----INVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETIT-PESLQTV 231
Cdd:COG1123 168 EPTTALDVTTQAEILDLLRELQrergTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEILAaPQALAAV 240
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
3-212 |
1.82e-34 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 121.91 E-value: 1.82e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 3 LICQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPL--EHWSLKETAKQMAV 80
Cdd:cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLtdLEDELPPLRRRIGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 81 VTQFNQLQFDCTVEEIVLLGrtphlsflqkekerdyalvhdalvkvdmlekktrlyssLSGGEKQRVLLARALAQEPTLL 160
Cdd:cd03229 81 VFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDPDVL 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 896617071 161 LLDEPTNHLDIKYQLDLLAIVKNLK----INVLAVLHDIQLACRYSDYLYLMKEGE 212
Cdd:cd03229 123 LLDEPTSALDPITRREVRALLKSLQaqlgITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| FtsE |
TIGR02673 |
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC ... |
17-202 |
2.54e-34 |
|
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. [Cellular processes, Cell division]
Pssm-ID: 131721 [Multi-domain] Cd Length: 214 Bit Score: 122.74 E-value: 2.54e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 17 ILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAK---QMAVVTQFNQLQFDCTV 93
Cdd:TIGR02673 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLlrrRIGVVFQDFRLLPDRTV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 94 EEIVLLGrtphLSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIKY 173
Cdd:TIGR02673 97 YENVALP----LEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDL 172
|
170 180 190
....*....|....*....|....*....|..
gi 896617071 174 QLDLLAIVKNLKI---NVLAVLHDIQLACRYS 202
Cdd:TIGR02673 173 SERILDLLKRLNKrgtTVIVATHDLSLVDRVA 204
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
11-200 |
3.30e-34 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 121.57 E-value: 3.30e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 11 GLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLyrqekadKGLIsldgKPLEHWSLKETAKQMAVVTQFNQL--Q 88
Cdd:NF040873 1 GYGGRPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVL-------AGVL----RPTSGTVRRAGGARVAYVPQRSEVpdS 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 89 FDCTVEEIVLLGRTPHLSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNH 168
Cdd:NF040873 70 LPLTVRDLVAMGRWARRGLWRRLTRDDRAAVDDALERVGLADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDEPTTG 149
|
170 180 190
....*....|....*....|....*....|....*
gi 896617071 169 LDIKYQLDLLAIVKNL---KINVLAVLHDIQLACR 200
Cdd:NF040873 150 LDAESRERIIALLAEEharGATVVVVTHDLELVRR 184
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
7-213 |
7.03e-34 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 121.21 E-value: 7.03e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 7 DIHFGLGEK-KILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLehwSLKETAKQMAVVTQFN 85
Cdd:cd03226 4 NISFSYKKGtEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPI---KAKERRKSIGYVMQDV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 86 QLQ-FDCTVEEIVLLGrtphlsflQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDE 164
Cdd:cd03226 81 DYQlFTDSVREELLLG--------LKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDE 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 896617071 165 PTNHLDiKYQLDLLA-IVKNL---KINVLAVLHDIQLACRYSDYLYLMKEGEI 213
Cdd:cd03226 153 PTSGLD-YKNMERVGeLIRELaaqGKAVIVITHDYEFLAKVCDRVLLLANGAI 204
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
13-224 |
7.81e-34 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 122.02 E-value: 7.81e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQFNQLQFDCT 92
Cdd:cd03295 12 GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMT 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 93 VEE-IVLLgrtPHLSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLD- 170
Cdd:cd03295 92 VEEnIALV---PKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDp 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 896617071 171 ---IKYQLDLLAIVKNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETIT 224
Cdd:cd03295 169 itrDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
6-221 |
4.28e-33 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 120.09 E-value: 4.28e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 6 QDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQ-MAVVTQ- 83
Cdd:COG0410 7 ENLHAGYGGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPPHRIARLgIGYVPEg 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 84 ---FNQLqfdcTVEEIVLLGRTPHLSflQKEKERDYALVHD---ALVkvdmlEKKTRLYSSLSGGEKQRVLLARALAQEP 157
Cdd:COG0410 87 rriFPSL----TVEENLLLGAYARRD--RAEVRADLERVYElfpRLK-----ERRRQRAGTLSGGEQQMLAIGRALMSRP 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 896617071 158 TLLLLDEPTNHLDIKYQLDLLAIVKNLK---INVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:COG0410 156 KLLLLDEPSLGLAPLIVEEIFEIIRRLNregVTILLVEQNARFALEIADRAYVLERGRIVLEGTAAE 222
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
1-170 |
2.01e-32 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 117.58 E-value: 2.01e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 1 MDLICQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHwSLKETAKQMAV 80
Cdd:COG4133 1 MMLEAENLSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRD-AREDYRRRLAY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 81 VTQFNQLQFDCTVEEivllgrtpHLSFLQ--KEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPT 158
Cdd:COG4133 80 LGHADGLKPELTVRE--------NLRFWAalYGLRADREAIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAP 151
|
170
....*....|..
gi 896617071 159 LLLLDEPTNHLD 170
Cdd:COG4133 152 LWLLDEPFTALD 163
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
14-221 |
9.04e-32 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 117.81 E-value: 9.04e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 14 EKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQFNQLQF-DCT 92
Cdd:PRK13635 19 ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFvGAT 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 93 VEEIVLLG----RTPHLSFLqkekERdyalVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNH 168
Cdd:PRK13635 99 VQDDVAFGleniGVPREEMV----ER----VDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSM 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 896617071 169 LDIKYQLDLLAIVKNLK----INVLAVLHDIQLACRySDYLYLMKEGEILYQGTPKE 221
Cdd:PRK13635 171 LDPRGRREVLETVRQLKeqkgITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEE 226
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
5-213 |
1.50e-31 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 115.32 E-value: 1.50e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 5 CQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWS--LKETAKQMAVVT 82
Cdd:cd03262 3 IKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKknINELRQKVGMVF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 83 Q-FNQLqfdctveeivllgrtPHLSFLQ-----------KEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLA 150
Cdd:cd03262 83 QqFNLF---------------PHLTVLEnitlapikvkgMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIA 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 896617071 151 RALAQEPTLLLLDEPTNHLDIKYQLDLLAIVKNL---KINVLAVLHDIQLACRYSDYLYLMKEGEI 213
Cdd:cd03262 148 RALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLaeeGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
3-232 |
2.49e-31 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 115.33 E-value: 2.49e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 3 LICQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAK------ 76
Cdd:cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARlgigyl 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 77 -QMAVVtqFNQLqfdcTVEE-IVLLGRTPHLSFLQKEKERDYALvhdALVKVDMLEKktRLYSSLSGGEKQRVLLARALA 154
Cdd:cd03218 81 pQEASI--FRKL----TVEEnILAVLEIRGLSKKEREEKLEELL---EEFHITHLRK--SKASSLSGGERRRVEIARALA 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 155 QEPTLLLLDEPTNHLDIKYQLDLLAIVKNLK---INVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETITPESLQTV 231
Cdd:cd03218 150 TNPKFLLLDEPFAGVDPIAVQDIQKIIKILKdrgIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANELVRKV 229
|
.
gi 896617071 232 Y 232
Cdd:cd03218 230 Y 230
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
5-194 |
1.40e-30 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 118.63 E-value: 1.40e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 5 CQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKplehwslketaKQMAVVTQF 84
Cdd:COG0488 1 LENLSKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIPKG-----------LRIGYLPQE 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 85 NQLQFDCTVEEIVLLGRTPhLSFLQKEKER-------------DYALVHDAL--------------------VKVDMLEK 131
Cdd:COG0488 70 PPLDDDLTVLDTVLDGDAE-LRALEAELEEleaklaepdedleRLAELQEEFealggweaearaeeilsglgFPEEDLDR 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 896617071 132 KTrlySSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIKyqldllAIV------KNLKINVLAVLHD 194
Cdd:COG0488 149 PV---SELSGGWRRRVALARALLSEPDLLLLDEPTNHLDLE------SIEwleeflKNYPGTVLVVSHD 208
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
22-217 |
1.62e-30 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 112.59 E-value: 1.62e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 22 SLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGkpLEHWSLKETAKQMAVVTQFNQLQFDCTVEEIVLLGR 101
Cdd:cd03298 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLING--VDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 102 TPHLSFLQKEKERdyalVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIKYQLDLLAIV 181
Cdd:cd03298 96 SPGLKLTAEDRQA----IEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLV 171
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 896617071 182 KNL----KINVLAVLHDIQLACRYSDYLYLMKEGEILYQG 217
Cdd:cd03298 172 LDLhaetKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
6-221 |
3.13e-30 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 115.81 E-value: 3.13e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 6 QDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSlketAKQMAVVTQFN 85
Cdd:PRK09452 18 RGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVP----AENRHVNTVFQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 86 Q--LQFDCTVEEIVLLG----RTPHlsflQKEKERdyalVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTL 159
Cdd:PRK09452 94 SyaLFPHMTVFENVAFGlrmqKTPA----AEITPR----VMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKV 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 896617071 160 LLLDEPTNHLDIK----YQLDLLAIVKNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:PRK09452 166 LLLDESLSALDYKlrkqMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPRE 231
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
18-221 |
4.35e-30 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 113.25 E-value: 4.35e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 18 LKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEH--WSLKETAKQMAVVTQF--NQLqFDCTV 93
Cdd:PRK13639 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYdkKSLLEVRKTVGIVFQNpdDQL-FAPTV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 94 EEIVLLGRTpHLSFLQKEKERDyalVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIKY 173
Cdd:PRK13639 97 EEDVAFGPL-NLGLSKEEVEKR---VKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMG 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 896617071 174 QLDLLAIVKNLK---INVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:PRK13639 173 ASQIMKLLYDLNkegITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKE 223
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
18-213 |
9.01e-30 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 110.96 E-value: 9.01e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 18 LKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAK---QMAVVTQFNQLQFDCTVE 94
Cdd:cd03292 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYlrrKIGVVFQDFRLLPDRNVY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 95 EIVLLGrtphLSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIKYQ 174
Cdd:cd03292 97 ENVAFA----LEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTT 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 896617071 175 LDLLAIVKnlKIN-----VLAVLHDIQLACRYSDYLYLMKEGEI 213
Cdd:cd03292 173 WEIMNLLK--KINkagttVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
1-221 |
1.14e-29 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 111.28 E-value: 1.14e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 1 MDLICQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKEtaKQMAV 80
Cdd:cd03296 1 MSIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE--RNVGF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 81 VTQFNQLQFDCTVEEIVLLG-RTPHLSFLQKEKERDyALVHDAL--VKVDMLEKktRLYSSLSGGEKQRVLLARALAQEP 157
Cdd:cd03296 79 VFQHYALFRHMTVFDNVAFGlRVKPRSERPPEAEIR-AKVHELLklVQLDWLAD--RYPAQLSGGQRQRVALARALAVEP 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 896617071 158 TLLLLDEPTNHLDIKYQLDLLAIVKNL--KINVLAVL--HDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:cd03296 156 KVLLLDEPFGALDAKVRKELRRWLRRLhdELHVTTVFvtHDQEEALEVADRVVVMNKGRIEQVGTPDE 223
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
6-221 |
1.22e-29 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 116.42 E-value: 1.22e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 6 QDIHFG-LGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQF 84
Cdd:COG1132 343 ENVSFSyPGDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDLTLESLRRQIGVVPQD 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 85 NQLqFDCTVEEIVLLGRtphlsflqkeKERDYALVHDALVK------VDMLEKK--TRLY---SSLSGGEKQRVLLARAL 153
Cdd:COG1132 423 TFL-FSGTIRENIRYGR----------PDATDEEVEEAAKAaqahefIEALPDGydTVVGergVNLSGGQRQRIAIARAL 491
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 896617071 154 AQEPTLLLLDEPTNHLDIKYQLDLLAIVKNLKIN--VLAV---LHDIQLAcrysDYLYLMKEGEILYQGTPKE 221
Cdd:COG1132 492 LKDPPILILDEATSALDTETEALIQEALERLMKGrtTIVIahrLSTIRNA----DRILVLDDGRIVEQGTHEE 560
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
3-224 |
3.18e-29 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 110.39 E-value: 3.18e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 3 LICQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYR-----QEKADKGLISLDGKPLEHWSLKETAKQ 77
Cdd:PRK14247 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRlielyPEARVSGEVYLDGQDIFKMDVIELRRR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 78 MAVVTQFNQLQFDCTVEEIVLLGrtPHLSFLQKEKERDYALVHDALVKVDMLEK-KTRL---YSSLSGGEKQRVLLARAL 153
Cdd:PRK14247 84 VQMVFQIPNPIPNLSIFENVALG--LKLNRLVKSKKELQERVRWALEKAQLWDEvKDRLdapAGKLSGGQQQRLCIARAL 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 896617071 154 AQEPTLLLLDEPTNHLDIKYQLDLLAIVKNLK--INVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETIT 224
Cdd:PRK14247 162 AFQPEVLLADEPTANLDPENTAKIESLFLELKkdMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFT 234
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
18-221 |
4.12e-29 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 110.61 E-value: 4.12e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 18 LKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQFNQLQF-DCTVEEI 96
Cdd:PRK13648 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFvGSIVKYD 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 97 VLLGRTPHLSFLQKEKERdyalVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIKYQLD 176
Cdd:PRK13648 105 VAFGLENHAVPYDEMHRR----VSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQN 180
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 896617071 177 LLAIVKNLK----INVLAVLHDIQLACRySDYLYLMKEGEILYQGTPKE 221
Cdd:PRK13648 181 LLDLVRKVKsehnITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTE 228
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
3-232 |
1.07e-28 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 108.52 E-value: 1.07e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 3 LICQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAK------ 76
Cdd:TIGR04406 2 LVAENLIKSYKKRKVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDITHLPMHERARlgigyl 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 77 -QMAVVtqFNQLqfdcTVEE--IVLLGRTPHLSFLQKEKERDyalvhDALVKVDMLEKKTRLYSSLSGGEKQRVLLARAL 153
Cdd:TIGR04406 82 pQEASI--FRKL----TVEEniMAVLEIRKDLDRAEREERLE-----ALLEEFQISHLRDNKAMSLSGGERRRVEIARAL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 154 AQEPTLLLLDEPTNHLDIKYQLDLLAIVKNLK---INVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETITPESLQT 230
Cdd:TIGR04406 151 ATNPKFILLDEPFAGVDPIAVGDIKKIIKHLKergIGVLITDHNVRETLDICDRAYIISDGKVLAEGTPAEIVANEKVRR 230
|
..
gi 896617071 231 VY 232
Cdd:TIGR04406 231 VY 232
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
17-233 |
1.48e-28 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 107.92 E-value: 1.48e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 17 ILKGVSLRVEGHQFH-----------TILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHwslKETAKQ-MAVVTQ- 83
Cdd:COG3840 3 RLDDLTYRYGDFPLRfdltiaagervAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTA---LPPAERpVSMLFQe 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 84 ---FNQLqfdcTVEEIVLLGRTPHLSFLQKEKERdyalVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLL 160
Cdd:COG3840 80 nnlFPHL----TVAQNIGLGLRPGLKLTAEQRAQ----VEQALERVGLAGLLDRLPGQLSGGQRQRVALARCLVRKRPIL 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 161 LLDEPTNHLDIKYQLDLLAIVKNL----KINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETI---TPESLQTVYG 233
Cdd:COG3840 152 LLDEPFSALDPALRQEMLDLVDELcrerGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALLdgePPPALAAYLG 231
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
18-223 |
3.98e-28 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 107.04 E-value: 3.98e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 18 LKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEhwSLKETAKQMAVVTQFNQLQFDCTVEEIV 97
Cdd:cd03299 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT--NLPPEKRDISYVPQNYALFPHMTVYKNI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 98 LLGrtphLSFLQKEKERDYALVHD--ALVKVD-MLEKKTRlysSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIKYQ 174
Cdd:cd03299 93 AYG----LKKRKVDKKEIERKVLEiaEMLGIDhLLNRKPE---TLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTK 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 896617071 175 ----LDLLAIVKNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETI 223
Cdd:cd03299 166 eklrEELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVF 218
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
3-243 |
5.39e-28 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 107.48 E-value: 5.39e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 3 LICQDIH--FGLG---EKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQ 77
Cdd:COG1101 2 LELKNLSktFNPGtvnEKRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTKLPEYKRAKY 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 78 MAVVTQfNQLQFDC---TVEEIVLL----GRTPHLSFLQKEKERDYalVHDALVKVDM-LEKktRLYS---SLSGGEKQR 146
Cdd:COG1101 82 IGRVFQ-DPMMGTApsmTIEENLALayrrGKRRGLRRGLTKKRREL--FRELLATLGLgLEN--RLDTkvgLLSGGQRQA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 147 VLLARALAQEPTLLLLDEPTNHLDIKYQLDLLA----IVKNLKINVLAVLHDIQLACRYSDYLYLMKEGEILY--QGTPK 220
Cdd:COG1101 157 LSLLMATLTKPKLLLLDEHTAALDPKTAALVLEltekIVEENNLTTLMVTHNMEQALDYGNRLIMMHEGRIILdvSGEEK 236
|
250 260
....*....|....*....|...
gi 896617071 221 ETITPESLQTVYGVQSQVTWTDD 243
Cdd:COG1101 237 KKLTVEDLLELFEEIRGEELADD 259
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
13-223 |
7.80e-28 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 106.13 E-value: 7.80e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWS---LKETAKQMAVVTQ-FNQLQ 88
Cdd:cd03258 16 GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSgkeLRKARRRIGMIFQhFNLLS 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 89 fDCTVEEIVLLgrtPhLSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNH 168
Cdd:cd03258 96 -SRTVFENVAL---P-LEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSA 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 896617071 169 LDIKYQ---LDLLA-IVKNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETI 223
Cdd:cd03258 171 LDPETTqsiLALLRdINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
14-221 |
8.60e-28 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 107.12 E-value: 8.60e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 14 EKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQFNQLQF-DCT 92
Cdd:PRK13650 19 EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFvGAT 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 93 VEEIVLLGRTPHLSFLQKEKERdyalVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIK 172
Cdd:PRK13650 99 VEDDVAFGLENKGIPHEEMKER----VNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPE 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 896617071 173 YQLDLLAIVKNLK----INVLAVLHDIQlACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:PRK13650 175 GRLELIKTIKGIRddyqMTVISITHDLD-EVALSDRVLVMKNGQVESTSTPRE 226
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
9-224 |
1.03e-27 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 105.95 E-value: 1.03e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 9 HFGlgEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKE-TAKQMA--VVTQFN 85
Cdd:PRK09493 10 HFG--PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDErLIRQEAgmVFQQFY 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 86 ---QLqfdcTVEEIVLLGRTpHLSFLQKEKERDYAlvHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLL 162
Cdd:PRK09493 88 lfpHL----TALENVMFGPL-RVRGASKEEAEKQA--RELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLF 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 896617071 163 DEPTNHLDIKYQLDLLAIVKNLK---INVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETIT 224
Cdd:PRK09493 161 DEPTSALDPELRHEVLKVMQDLAeegMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
14-226 |
2.01e-27 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 106.23 E-value: 2.01e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 14 EKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQFNQLQF-DCT 92
Cdd:PRK13632 21 ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFiGAT 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 93 VEEIVLLGrtphLSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIK 172
Cdd:PRK13632 101 VEDDIAFG----LENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPK 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 896617071 173 YQLDLLAIVKNLKIN----VLAVLHDIQLACRySDYLYLMKEGEILYQGTPKETITPE 226
Cdd:PRK13632 177 GKREIKKIMVDLRKTrkktLISITHDMDEAIL-ADKVIVFSEGKLIAQGKPKEILNNK 233
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
14-217 |
2.08e-27 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 105.05 E-value: 2.08e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 14 EKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADK---GLISLDGKPLehwSLKETAKQMAVVTQFNQLQFD 90
Cdd:cd03234 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGttsGQILFNGQPR---KPDQFQKCVAYVRQDDILLPG 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 91 CTVEE-----IVLLGRTPHLSFLQKEKERDYALVHDALVKVdmlekKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEP 165
Cdd:cd03234 96 LTVREtltytAILRLPRKSSDAIRKKRVEDVLLRDLALTRI-----GGNLVKGISGGERRRVSIAVQLLWDPKVLILDEP 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 166 TNHLDIKYQLDLLAIVKNL----KInVLAVLH----DIqlaCRYSDYLYLMKEGEILYQG 217
Cdd:cd03234 171 TSGLDSFTALNLVSTLSQLarrnRI-VILTIHqprsDL---FRLFDRILLLSSGEIVYSG 226
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
13-221 |
3.24e-27 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 107.09 E-value: 3.24e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKEtaKQMAVVTQFNQLQFDCT 92
Cdd:PRK10851 13 GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD--RKVGFVFQHYALFRHMT 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 93 VEEIVLLGrtphLSFL-QKEKERDYALVHDALVKVDMLEKK---TRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNH 168
Cdd:PRK10851 91 VFDNIAFG----LTVLpRRERPNAAAIKAKVTQLLEMVQLAhlaDRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGA 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 896617071 169 LDIKYQLDLLAIVKNL----KINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:PRK10851 167 LDAQVRKELRRWLRQLheelKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQ 223
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
13-228 |
3.26e-27 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 105.66 E-value: 3.26e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQFNQLQ-FDC 91
Cdd:PRK13652 15 GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQiFSP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 92 TVEEIVLLGRTPhlsfLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDI 171
Cdd:PRK13652 95 TVEQDIAFGPIN----LGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDP 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 896617071 172 KYQLDLLAIVKNLK----INVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETITPESL 228
Cdd:PRK13652 171 QGVKELIDFLNDLPetygMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDL 231
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
21-224 |
3.52e-27 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 105.42 E-value: 3.52e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 21 VSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKET----AKQMAVVTQfnqlQFdctveei 96
Cdd:cd03294 43 VSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELrelrRKKISMVFQ----SF------- 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 97 vllGRTPHLSFL-----------QKEKERdYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEP 165
Cdd:cd03294 112 ---ALLPHRTVLenvafglevqgVPRAER-EERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEA 187
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 896617071 166 TNHLD--IKYQL--DLLAIVKNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETIT 224
Cdd:cd03294 188 FSALDplIRREMqdELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
4-217 |
3.99e-27 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 103.91 E-value: 3.99e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 4 ICQDIHFGLGEKKiLKgVSLRVEGhQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLK----ETAKQMA 79
Cdd:cd03297 2 LCVDIEKRLPDFT-LK-IDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKinlpPQQRKIG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 80 VVTQFNQLQFDCTVEEIVLLGrtphLSFLQKEKERDYALVHDALVKVDMLEKktRLYSSLSGGEKQRVLLARALAQEPTL 159
Cdd:cd03297 79 LVFQQYALFPHLNVRENLAFG----LKRKRNREDRISVDELLDLLGLDHLLN--RYPAQLSGGEKQRVALARALAAQPEL 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 896617071 160 LLLDEPTNHLD--IKYQL--DLLAIVKNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQG 217
Cdd:cd03297 153 LLLDEPFSALDraLRLQLlpELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
7-228 |
5.09e-27 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 104.23 E-value: 5.09e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 7 DIHFGLG-EKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQFN 85
Cdd:cd03253 5 NVTFAYDpGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDT 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 86 QLqFDCTVEEIVLLGRtPHLSFLQKEKERDYALVHDALVKvdmLEKKtrlYSS--------LSGGEKQRVLLARALAQEP 157
Cdd:cd03253 85 VL-FNDTIGYNIRYGR-PDATDEEVIEAAKAAQIHDKIMR---FPDG---YDTivgerglkLSGGEKQRVAIARAILKNP 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 896617071 158 TLLLLDEPTNHLDI----KYQLDLLAIVKNLKINVLA-VLHDIQLAcrysDYLYLMKEGEILYQGTPKETITPESL 228
Cdd:cd03253 157 PILLLDEATSALDThterEIQAALRDVSKGRTTIVIAhRLSTIVNA----DKIIVLKDGRIVERGTHEELLAKGGL 228
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
13-208 |
5.42e-27 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 108.53 E-value: 5.42e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQFNQLqFDCT 92
Cdd:TIGR02857 333 GRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFL-FAGT 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 93 VEEIVLLGRtphlsflqkeKERDYALVHDALVKVDMLE--------KKTRLYSS---LSGGEKQRVLLARALAQEPTLLL 161
Cdd:TIGR02857 412 IAENIRLAR----------PDASDAEIREALERAGLDEfvaalpqgLDTPIGEGgagLSGGQAQRLALARAFLRDAPLLL 481
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 896617071 162 LDEPTNHLDIKYQLDLLAIVKNLKIN--VLAVLHDIQLACRYsDYLYLM 208
Cdd:TIGR02857 482 LDEPTAHLDAETEAEVLEALRALAQGrtVLLVTHRLALAALA-DRIVVL 529
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
27-248 |
6.37e-27 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 104.24 E-value: 6.37e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 27 GHQFHTIlGPNGSGKTSLLK----LLyrqekADKGLISLDGKPLEHWSLKETAKQMAVVTQFNQLQFDCTVEEIVLLGRT 102
Cdd:PRK03695 22 GEILHLV-GPNGAGKSTLLArmagLL-----PGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQP 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 103 PHLSFLQKEKerdyaLVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQ-------EPTLLLLDEPTNHLDIKYQ- 174
Cdd:PRK03695 96 DKTRTEAVAS-----ALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQvwpdinpAGQLLLLDEPMNSLDVAQQa 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 896617071 175 -LD-LLAIVKNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETITPESLQTVYGVQSQVTWTDDQQAMI 248
Cdd:PRK03695 171 aLDrLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPENLAQVFGVNFRRLDVEGHPMLI 246
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
11-217 |
6.96e-27 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 102.63 E-value: 6.96e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 11 GLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLL--YRQEKADKGLISLDGKPLEHWSLKetaKQMAVVTQFNQLQ 88
Cdd:cd03213 18 SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALagRRTGLGVSGEVLINGRPLDKRSFR---KIIGYVPQDDILH 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 89 FDCTVEEivllgrtphlsflqkekerdyALVHDALVKvdmlekktrlysSLSGGEKQRVLLARALAQEPTLLLLDEPTNH 168
Cdd:cd03213 95 PTLTVRE---------------------TLMFAAKLR------------GLSGGERKRVSIALELVSNPSLLFLDEPTSG 141
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 896617071 169 LDIKYQLDLLAIVKNLK---INVLAVLHdiQLacRYSDY-----LYLMKEGEILYQG 217
Cdd:cd03213 142 LDSSSALQVMSLLRRLAdtgRTIICSIH--QP--SSEIFelfdkLLLLSQGRVIYFG 194
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
2-179 |
7.01e-27 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 108.22 E-value: 7.01e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 2 DLICQDIHFGL-GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAV 80
Cdd:TIGR02868 334 TLELRDLSAGYpGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSV 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 81 VTQFNQLqFDCTVEEIVLLGRtphlsflqkeKERDYALVHDALVKVDMLEKKTRLY-----------SSLSGGEKQRVLL 149
Cdd:TIGR02868 414 CAQDAHL-FDTTVRENLRLAR----------PDATDEELWAALERVGLADWLRALPdgldtvlgeggARLSGGERQRLAL 482
|
170 180 190
....*....|....*....|....*....|
gi 896617071 150 ARALAQEPTLLLLDEPTNHLDIKYQLDLLA 179
Cdd:TIGR02868 483 ARALLADAPILLLDEPTEHLDAETADELLE 512
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
13-221 |
8.37e-27 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 105.93 E-value: 8.37e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKEtaKQMAVVTQFnqlqfdct 92
Cdd:COG3839 14 GGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVTDLPPKD--RNIAMVFQS-------- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 93 veeIVLLgrtPHLS------F---LQK--EKERDyALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLL 161
Cdd:COG3839 84 ---YALY---PHMTvyeniaFplkLRKvpKAEID-RRVREAAELLGLEDLLDRKPKQLSGGQRQRVALGRALVREPKVFL 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 896617071 162 LDEPTNHLDikYQL------DLLAIVKNLKINVLAVLHDiQ-----LAcrysDYLYLMKEGEILYQGTPKE 221
Cdd:COG3839 157 LDEPLSNLD--AKLrvemraEIKRLHRRLGTTTIYVTHD-QveamtLA----DRIAVMNDGRIQQVGTPEE 220
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
14-228 |
5.28e-26 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 102.57 E-value: 5.28e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 14 EKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKL---LYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQFNQLQF- 89
Cdd:PRK13640 19 KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLingLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFv 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 90 DCTVEEIVLLGrtphLSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHL 169
Cdd:PRK13640 99 GATVGDDVAFG----LENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSML 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 896617071 170 DIKYQLDLLAIVKNLKIN----VLAVLHDIQLAcRYSDYLYLMKEGEILYQGTPKETITPESL 228
Cdd:PRK13640 175 DPAGKEQILKLIRKLKKKnnltVISITHDIDEA-NMADQVLVLDDGKLLAQGSPVEIFSKVEM 236
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
14-226 |
7.92e-26 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 101.08 E-value: 7.92e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 14 EKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQFNQLqFDCTV 93
Cdd:cd03249 15 DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVL-FDGTI 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 94 EEIVLLGRTPHLSFLQKEKERDyALVHDALVKvdmLEKK--TRL---YSSLSGGEKQRVLLARALAQEPTLLLLDEPTNH 168
Cdd:cd03249 94 AENIRYGKPDATDEEVEEAAKK-ANIHDFIMS---LPDGydTLVgerGSQLSGGQKQRIAIARALLRNPKILLLDEATSA 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 896617071 169 LD------IKYQLDllaivkNLKIN--VLAVLHDIqLACRYSDYLYLMKEGEILYQGTPKETITPE 226
Cdd:cd03249 170 LDaeseklVQEALD------RAMKGrtTIVIAHRL-STIRNADLIAVLQNGQVVEQGTHDELMAQK 228
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
3-171 |
1.03e-25 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 104.76 E-value: 1.03e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 3 LICQDIHFGLGEKKILKGVSLRVE-----GhqfhtILGPNGSGKTSLLKLLYRQEKADKGLISLdGKPLehwslketakQ 77
Cdd:COG0488 316 LELEGLSKSYGDKTLLDDLSLRIDrgdriG-----LIGPNGAGKSTLLKLLAGELEPDSGTVKL-GETV----------K 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 78 MAVVTQfNQLQFDCT---VEEIVLL---GRTPHL-SFLQkekerdyalvhDALVKVDMLEKKTrlySSLSGGEKQRVLLA 150
Cdd:COG0488 380 IGYFDQ-HQEELDPDktvLDELRDGapgGTEQEVrGYLG-----------RFLFSGDDAFKPV---GVLSGGEKARLALA 444
|
170 180
....*....|....*....|.
gi 896617071 151 RALAQEPTLLLLDEPTNHLDI 171
Cdd:COG0488 445 KLLLSPPNVLLLDEPTNHLDI 465
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
1-219 |
2.33e-25 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 100.58 E-value: 2.33e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 1 MDLICQ--DIHFGLGE-KKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQ 77
Cdd:PRK13647 1 MDNIIEveDLHFRYKDgTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 78 MAVVTQFNQLQ-FDCTVEEIVLLGRTpHLSFLQKEKERDyalVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQE 156
Cdd:PRK13647 81 VGLVFQDPDDQvFSSTVWDDVAFGPV-NMGLDKDEVERR---VEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMD 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 896617071 157 PTLLLLDEPTNHLDIKYQLDLLAIVKNLKIN---VLAVLHDIQLACRYSDYLYLMKEGEILYQGTP 219
Cdd:PRK13647 157 PDVIVLDEPMAYLDPRGQETLMEILDRLHNQgktVIVATHDVDLAAEWADQVIVLKEGRVLAEGDK 222
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
13-226 |
3.25e-25 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 101.04 E-value: 3.25e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSlKETAKQMAVVTQFNQLQFDCT 92
Cdd:PRK13537 18 GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRVGVVPQFDNLDPDFT 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 93 V-EEIVLLGRTPHLSFLQKEkerdyALVhDALVKVDMLEKKTRL-YSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLD 170
Cdd:PRK13537 97 VrENLLVFGRYFGLSAAAAR-----ALV-PPLLEFAKLENKADAkVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLD 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 896617071 171 ------IKYQL-DLLAIVKnlkiNVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETITPE 226
Cdd:PRK13537 171 pqarhlMWERLrSLLARGK----TILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIESE 229
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
21-221 |
3.32e-25 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 101.73 E-value: 3.32e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 21 VSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKplehwSLKETAKQmaVVTQFNQLQFDCTVEEIVLLg 100
Cdd:TIGR02142 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGR-----TLFDSRKG--IFLPPEKRRIGYVFQEARLF- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 101 rtPHLSFLQ------KEKERDYALVHDALVkVDMLEKK---TRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDI 171
Cdd:TIGR02142 88 --PHLSVRGnlrygmKRARPSERRISFERV-IELLGIGhllGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDD 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 896617071 172 KYQLDLLAIVKNL----KINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:TIGR02142 165 PRKYEILPYLERLhaefGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAE 218
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
13-186 |
3.42e-25 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 97.67 E-value: 3.42e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQFNQLqFDCT 92
Cdd:cd03246 13 AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDEL-FSGS 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 93 VEEIVLlgrtphlsflqkekerdyalvhdalvkvdmlekktrlysslSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIK 172
Cdd:cd03246 92 IAENIL-----------------------------------------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVE 130
|
170
....*....|....
gi 896617071 173 YQLDLLAIVKNLKI 186
Cdd:cd03246 131 GERALNQAIAALKA 144
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
14-221 |
3.91e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 100.51 E-value: 3.91e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 14 EKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPL--EHWSLKETAKQMAVVTQFNQLQ-FD 90
Cdd:PRK13637 19 EKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDItdKKVKLSDIRKKVGLVFQYPEYQlFE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 91 CTVEEIVLLGrtphLSFLQKEKERDYALVHDA--LVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNH 168
Cdd:PRK13637 99 ETIEKDIAFG----PINLGLSEEEIENRVKRAmnIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAG 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 896617071 169 LDIKYQLDLLAIVKNL----KINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:PRK13637 175 LDPKGRDEILNKIKELhkeyNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
13-213 |
4.36e-25 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 98.48 E-value: 4.36e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKEtaKQMAVVTQFNQLQFDCT 92
Cdd:cd03301 11 GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD--RDIAMVFQNYALYPHMT 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 93 VEEIVLLGRTphlsfLQKEKERDY-ALVHDA--LVKVD-MLEKKTRlysSLSGGEKQRVLLARALAQEPTLLLLDEPTNH 168
Cdd:cd03301 89 VYDNIAFGLK-----LRKVPKDEIdERVREVaeLLQIEhLLDRKPK---QLSGGQRQRVALGRAIVREPKVFLMDEPLSN 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 896617071 169 LDIKYQLDLLA----IVKNLKINVLAVLHDIQLACRYSDYLYLMKEGEI 213
Cdd:cd03301 161 LDAKLRVQMRAelkrLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQI 209
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
3-217 |
7.92e-25 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 97.65 E-value: 7.92e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 3 LICQDIHFGLGEKKILKGVSLRVEGhQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLehwsLKETAKQMAVVT 82
Cdd:cd03264 1 LQLENLTKRYGKKRALDGVSLTLGP-GMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDV----LKQPQKLRRRIG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 83 QFNQlQFDC----TVEEIV----LLGRTPHlsflQKEKERdyalVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALA 154
Cdd:cd03264 76 YLPQ-EFGVypnfTVREFLdyiaWLKGIPS----KEVKAR----VDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALV 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 896617071 155 QEPTLLLLDEPTNHLDIKYQLDLLAIVKNLKINVLAVL--H---DIQLACrysDYLYLMKEGEILYQG 217
Cdd:cd03264 147 GDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILstHiveDVESLC---NQVAVLNKGKLVFEG 211
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
3-197 |
1.55e-24 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 95.21 E-value: 1.55e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 3 LICQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPlehwslketakQMAVVT 82
Cdd:cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTV-----------KIGYFE 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 83 QfnqlqfdctveeivllgrtphlsflqkekerdyalvhdalvkvdmlekktrlyssLSGGEKQRVLLARALAQEPTLLLL 162
Cdd:cd03221 70 Q-------------------------------------------------------LSGGEKMRLALAKLLLENPNLLLL 94
|
170 180 190
....*....|....*....|....*....|....*
gi 896617071 163 DEPTNHLDIKYQLDLLAIVKNLKINVLAVLHDIQL 197
Cdd:cd03221 95 DEPTNHLDLESIEALEEALKEYPGTVILVSHDRYF 129
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
13-216 |
1.98e-24 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 97.95 E-value: 1.98e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEhwslKETAKQMAVVTQFNQLQF-DC 91
Cdd:TIGR02769 22 QRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLY----QLDRKQRRAFRRDVQLVFqDS 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 92 --------TVEEIVllgRTP--HLSFLQK--EKERDYALVHDALVKVDMLEKKTRlysSLSGGEKQRVLLARALAQEPTL 159
Cdd:TIGR02769 98 psavnprmTVRQII---GEPlrHLTSLDEseQKARIAELLDMVGLRSEDADKLPR---QLSGGQLQRINIARALAVKPKL 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 896617071 160 LLLDEPTNHLDIKYQLDLLAIVKNLK----INVLAVLHDIQLACRYSDYLYLMKEGEILYQ 216
Cdd:TIGR02769 172 IVLDEAVSNLDMVLQAVILELLRKLQqafgTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
1-232 |
3.27e-24 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 96.64 E-value: 3.27e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 1 MDLICQDIHFGLGEKKILKGVSLRVE-----GhqfhtILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETA 75
Cdd:COG1137 2 MTLEAENLVKSYGKRTVVKDVSLEVNqgeivG-----LLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHLPMHKRA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 76 K-------QMAVVtqFNQLqfdcTVEE---IVLlgRTPHLSFLQKEKERDyALVHD-ALVKVdmleKKTRLYsSLSGGEK 144
Cdd:COG1137 77 RlgigylpQEASI--FRKL----TVEDnilAVL--ELRKLSKKEREERLE-ELLEEfGITHL----RKSKAY-SLSGGER 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 145 QRVLLARALAQEPTLLLLDE------PTNHLDIKyqldllAIVKNLK---INVLAVLHDIQLACRYSDYLYLMKEGEILY 215
Cdd:COG1137 143 RRVEIARALATNPKFILLDEpfagvdPIAVADIQ------KIIRHLKergIGVLITDHNVRETLGICDRAYIISEGKVLA 216
|
250
....*....|....*..
gi 896617071 216 QGTPKETITPESLQTVY 232
Cdd:COG1137 217 EGTPEEILNNPLVRKVY 233
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
9-221 |
3.91e-24 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 96.03 E-value: 3.91e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 9 HFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLeHWSLKETAKQMAVVTQFNQLQ 88
Cdd:cd03263 9 TYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSI-RTDRKAARQSLGYCPQFDALF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 89 FDCTVEE-IVLLGRTPHLSFLQKEKErdyalVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTN 167
Cdd:cd03263 88 DELTVREhLRFYARLKGLPKSEIKEE-----VELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTS 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 896617071 168 HLDIKYQLDLLAIVKNLKIN--VLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:cd03263 163 GLDPASRRAIWDLILEVRKGrsIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQE 218
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
2-218 |
3.95e-24 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 100.67 E-value: 3.95e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 2 DLICQDIHFGL--GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMA 79
Cdd:PRK11160 338 SLTLNNVSFTYpdQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAIS 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 80 VVTQFNQLqFDCTVEEIVLLGrtphlsflqKEKERDYALVhDALVKV---DMLEKKTRLYS-------SLSGGEKQRVLL 149
Cdd:PRK11160 418 VVSQRVHL-FSATLRDNLLLA---------APNASDEALI-EVLQQVgleKLLEDDKGLNAwlgeggrQLSGGEQRRLGI 486
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 896617071 150 ARALAQEPTLLLLDEPTNHLDIKYQLDLLAIVKNLKIN--VLAVLHDIQlACRYSDYLYLMKEGEILYQGT 218
Cdd:PRK11160 487 ARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNktVLMITHRLT-GLEQFDRICVMDNGQIIEQGT 556
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
13-217 |
4.21e-24 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 95.75 E-value: 4.21e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHwsLKETAKQMAVVTQFNQLQFDCT 92
Cdd:cd03268 11 GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQK--NIEALRRIGALIEAPGFYPNLT 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 93 VEEivllgrtpHLSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLD-- 170
Cdd:cd03268 89 ARE--------NLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDpd 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 896617071 171 -IKYQLDLLAIVKNLKINVLA---VLHDIQLACrysDYLYLMKEGEILYQG 217
Cdd:cd03268 161 gIKELRELILSLRDQGITVLIsshLLSEIQKVA---DRIGIINKGKLIEEG 208
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
18-221 |
6.88e-24 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 97.09 E-value: 6.88e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 18 LKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQFNQLQF-DCTVEEI 96
Cdd:PRK13642 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFvGATVEDD 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 97 VLLGrtphLSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIKYQLD 176
Cdd:PRK13642 103 VAFG----MENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQE 178
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 896617071 177 LLAIVKNLK----INVLAVLHDIQLACRySDYLYLMKEGEILYQGTPKE 221
Cdd:PRK13642 179 IMRVIHEIKekyqLTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSE 226
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
7-221 |
7.29e-24 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 95.76 E-value: 7.29e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 7 DIHFGLGEKK-ILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQ-- 83
Cdd:cd03254 7 NVNFSYDEKKpVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQdt 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 84 --FNQLQFD--------CTVEEIVLLGRTPHL-SFLQK-EKERDYALVHDAlvkvdmlekktrlySSLSGGEKQRVLLAR 151
Cdd:cd03254 87 flFSGTIMEnirlgrpnATDEEVIEAAKEAGAhDFIMKlPNGYDTVLGENG--------------GNLSQGERQLLAIAR 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 896617071 152 ALAQEPTLLLLDEPTNHLDIKYQLDLLAIVKNLKIN--VLAVLHdiQLAC-RYSDYLYLMKEGEILYQGTPKE 221
Cdd:cd03254 153 AMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGrtSIIIAH--RLSTiKNADKILVLDDGKIIEEGTHDE 223
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
3-227 |
1.73e-23 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 95.42 E-value: 1.73e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 3 LICQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDG-------------KPLEHW 69
Cdd:PRK10619 6 LNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGqtinlvrdkdgqlKVADKN 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 70 SLKETAKQMAVVTQFNQLQFDCTVEEIVLLGRTPHLSfLQKEKERDYALVHdaLVKVDMLEKKTRLY-SSLSGGEKQRVL 148
Cdd:PRK10619 86 QLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG-LSKQEARERAVKY--LAKVGIDERAQGKYpVHLSGGQQQRVS 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 149 LARALAQEPTLLLLDEPTNHLDIKYQLDLLAIVKNLK---INVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETI-T 224
Cdd:PRK10619 163 IARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAeegKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFgN 242
|
...
gi 896617071 225 PES 227
Cdd:PRK10619 243 PQS 245
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
17-221 |
1.74e-23 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 95.20 E-value: 1.74e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 17 ILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLI-----SLDG-KPLEHWS--LKETAKQMAVVTQ-FNQL 87
Cdd:PRK11264 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIrvgdiTIDTaRSLSQQKglIRQLRQHVGFVFQnFNLF 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 88 QFDCTVEEI----VLLGRTPhlsflqkeKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLD 163
Cdd:PRK11264 98 PHRTVLENIiegpVIVKGEP--------KEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFD 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 896617071 164 EPTNHLDIKYQLDLLAIVKNL---KINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:PRK11264 170 EPTSALDPELVGEVLNTIRQLaqeKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKA 230
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
11-170 |
1.75e-23 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 95.31 E-value: 1.75e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 11 GLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSlketAKQmAVVTQFNQLQFD 90
Cdd:COG4525 16 GGQPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVTGPG----ADR-GVVFQKDALLPW 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 91 CTVEEIVLLGrtphLSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLD 170
Cdd:COG4525 91 LNVLDNVAFG----LRLRGVPKAERRARAEELLALVGLADFARRRIWQLSGGMRQRVGIARALAADPRFLLMDEPFGALD 166
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
14-221 |
1.75e-23 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 95.46 E-value: 1.75e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 14 EKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLyrqekadKGLISLDGKPLEHWSL----------------KETAKQ 77
Cdd:PRK09984 16 QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHL-------SGLITGDKSAGSHIELlgrtvqregrlardirKSRANT 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 78 MAVVTQFNqLQFDCTVEEIVLLG--------RTPHLSFLQKEKERDYalvhDALVKVDMLEKKTRLYSSLSGGEKQRVLL 149
Cdd:PRK09984 89 GYIFQQFN-LVNRLSVLENVLIGalgstpfwRTCFSWFTREQKQRAL----QALTRVGMVHFAHQRVSTLSGGQQQRVAI 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 896617071 150 ARALAQEPTLLLLDEPTNHLD---IKYQLDLLA-IVKNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:PRK09984 164 ARALMQQAKVILADEPIASLDpesARIVMDTLRdINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQ 239
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
15-211 |
2.09e-23 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 95.15 E-value: 2.09e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 15 KKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEhwslkETAKQMAVVTQFNQLQFDCTVE 94
Cdd:PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVE-----GPGAERGVVFQNEGLLPWRNVQ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 95 EIVLLGrtphLSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDI--- 171
Cdd:PRK11248 89 DNVAFG----LQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAftr 164
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 896617071 172 -KYQLDLLAIVKNLKINVLAVLHDIQLACRYSDYLYLMKEG 211
Cdd:PRK11248 165 eQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPG 205
|
|
| L_ocin_972_ABC |
TIGR03608 |
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly ... |
13-198 |
3.46e-23 |
|
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]
Pssm-ID: 188353 [Multi-domain] Cd Length: 206 Bit Score: 93.45 E-value: 3.46e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAK----QMAVVTQFNQLQ 88
Cdd:TIGR03608 9 GDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASKfrreKLGYLFQNFALI 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 89 FDCTVEEIVLLGrtphLSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNH 168
Cdd:TIGR03608 89 ENETVEENLDLG----LKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGS 164
|
170 180 190
....*....|....*....|....*....|...
gi 896617071 169 LDIKYQLDLLAIVKNLKIN---VLAVLHDIQLA 198
Cdd:TIGR03608 165 LDPKNRDEVLDLLLELNDEgktIIIVTHDPEVA 197
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
13-231 |
4.12e-23 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 95.92 E-value: 4.12e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLehWSLKETA-----KQMAVVTQ-FNQ 86
Cdd:COG1135 16 GPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDL--TALSERElraarRKIGMIFQhFNL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 87 LQfDCTVEEIVLLgrtPhLSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPT 166
Cdd:COG1135 94 LS-SRTVAENVAL---P-LEIAGVPKAEIRKRVAELLELVGLSDKADAYPSQLSGGQKQRVGIARALANNPKVLLCDEAT 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 167 NHLD------IkyqLDLLA-IVKNLKINVLAVLHD---IQLACrysDYLYLMKEGEILYQGT-------PKETITPESLQ 229
Cdd:COG1135 169 SALDpettrsI---LDLLKdINRELGLTIVLITHEmdvVRRIC---DRVAVLENGRIVEQGPvldvfanPQSELTRRFLP 242
|
..
gi 896617071 230 TV 231
Cdd:COG1135 243 TV 244
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
16-213 |
5.53e-23 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 91.34 E-value: 5.53e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 16 KILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQ-MAVVTQfnqlqfdctve 94
Cdd:cd03216 14 KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAgIAMVYQ----------- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 95 eivllgrtphlsflqkekerdyalvhdalvkvdmlekktrlyssLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIKYQ 174
Cdd:cd03216 83 --------------------------------------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEV 118
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 896617071 175 LDLLAIVKNLK---INVLAVLHDIQLACRYSDYLYLMKEGEI 213
Cdd:cd03216 119 ERLFKVIRRLRaqgVAVIFISHRLDEVFEIADRVTVLRDGRV 160
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
13-221 |
6.82e-23 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 92.82 E-value: 6.82e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGkpleHWSLKETA---KQMAVVTQFNQLQF 89
Cdd:cd03265 11 GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAG----HDVVREPRevrRRIGIVFQDLSVDD 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 90 DCT-VEEIVLLGRTPHLSFlQKEKERdyalVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNH 168
Cdd:cd03265 87 ELTgWENLYIHARLYGVPG-AERRER----IDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIG 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 896617071 169 LDIKYQLDLLAIVKNLK----INVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:cd03265 162 LDPQTRAHVWEYIEKLKeefgMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE 218
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
3-221 |
1.05e-22 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 93.53 E-value: 1.05e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 3 LICQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVT 82
Cdd:PRK13638 2 LATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVAT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 83 QFN----QLQFDCTVEEIVLLGRtpHLSFLQKEKERDyalVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPT 158
Cdd:PRK13638 82 VFQdpeqQIFYTDIDSDIAFSLR--NLGVPEAEITRR---VDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQAR 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 896617071 159 LLLLDEPTNHLDIKYQLDLLAIVKNLKI---NVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:PRK13638 157 YLLLDEPTAGLDPAGRTQMIAIIRRIVAqgnHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGE 222
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
8-224 |
1.09e-22 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 93.19 E-value: 1.09e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 8 IHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHW-------SLKETAKQMAV 80
Cdd:PRK14246 16 LYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGkdifqidAIKLRKEVGMV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 81 VTQFNQLQFDCTVEEIVLlgrtPHLSFLQKEKERDYALVHDALVKVDML-EKKTRL---YSSLSGGEKQRVLLARALAQE 156
Cdd:PRK14246 96 FQQPNPFPHLSIYDNIAY----PLKSHGIKEKREIKKIVEECLRKVGLWkEVYDRLnspASQLSGGQQQRLTIARALALK 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 157 PTLLLLDEPTNHLDIKYQLDLLAIVKNLK--INVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETIT 224
Cdd:PRK14246 172 PKVLLMDEPTSMIDIVNSQAIEKLITELKneIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFT 241
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
21-221 |
1.30e-22 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 94.90 E-value: 1.30e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 21 VSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHwsLKETAKQMAVVTQFNQLQFDCTVEEIVLLG 100
Cdd:PRK11607 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSH--VPPYQRPINMMFQSYALFPHMTVEQNIAFG 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 101 rtphLSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIK----YQLD 176
Cdd:PRK11607 116 ----LKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKlrdrMQLE 191
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 896617071 177 LLAIVKNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:PRK11607 192 VVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEE 236
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
20-221 |
1.41e-22 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 92.75 E-value: 1.41e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 20 GVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKqMAVVTQFNQLQF--DCTVEEIV 97
Cdd:PRK11300 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIAR-MGVVRTFQHVRLfrEMTVIENL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 98 LLGRTPHL------------SFLQKEKER-DYALVHdaLVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDE 164
Cdd:PRK11300 102 LVAQHQQLktglfsgllktpAFRRAESEAlDRAATW--LERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDE 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 896617071 165 PTNHLDIKYQLDLLAIVKNLK----INVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:PRK11300 180 PAAGLNPKETKELDELIAELRnehnVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEE 240
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
7-217 |
1.59e-22 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 90.84 E-value: 1.59e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 7 DIHFGLGE--KKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLeHWSLKETAKQMAVVTQF 84
Cdd:cd03247 5 NVSFSYPEqeQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPV-SDLEKALSSLISVLNQR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 85 NQLqFDCTVEEIvlLGRtphlsflqkekerdyalvhdalvkvdmlekktrlysSLSGGEKQRVLLARALAQEPTLLLLDE 164
Cdd:cd03247 84 PYL-FDTTLRNN--LGR------------------------------------RFSGGERQRLALARILLQDAPIVLLDE 124
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 896617071 165 PTNHLDIKYQLDLLAIV-KNLK-INVLAVLHDIQlACRYSDYLYLMKEGEILYQG 217
Cdd:cd03247 125 PTVGLDPITERQLLSLIfEVLKdKTLIWITHHLT-GIEHMDKILFLENGKIIMQG 178
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
8-221 |
1.61e-22 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 95.91 E-value: 1.61e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 8 IHFGLG--EKKILKGVSLRVEGHQFHTILGPNGSGKT----SLLKLLYRQEKADKGLISLDGKPLEHWSLKETAK----Q 77
Cdd:COG4172 14 VAFGQGggTVEAVKGVSFDIAAGETLALVGESGSGKSvtalSILRLLPDPAAHPSGSILFDGQDLLGLSERELRRirgnR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 78 MAVVTQ-----FNQLQfdcTVE----EIVLLgrtpHLSfLQKEKERDYALvhDALVKVDMLEKKTRLYS---SLSGGEKQ 145
Cdd:COG4172 94 IAMIFQepmtsLNPLH---TIGkqiaEVLRL----HRG-LSGAAARARAL--ELLERVGIPDPERRLDAyphQLSGGQRQ 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 146 RVLLARALAQEPTLLLLDEPTNHLDIKYQ---LDLLA-IVKNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:COG4172 164 RVMIAMALANEPDLLIADEPTTALDVTVQaqiLDLLKdLQRELGMALLLITHDLGVVRRFADRVAVMRQGEIVEQGPTAE 243
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
13-213 |
1.88e-22 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 92.43 E-value: 1.88e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHwsLKETAKQMavvTQFNQLQFDCT 92
Cdd:PRK11247 23 GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAE--AREDTRLM---FQDARLLPWKK 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 93 VEEIVLLGrtphlsflQKEKERDYALvhDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIK 172
Cdd:PRK11247 98 VIDNVGLG--------LKGQWRDAAL--QALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDAL 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 896617071 173 YQLDLLAIVKNL----KINVLAVLHDIQLACRYSDYLYLMKEGEI 213
Cdd:PRK11247 168 TRIEMQDLIESLwqqhGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
17-200 |
2.65e-22 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 91.73 E-value: 2.65e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 17 ILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAK----QMAVVTQFNQLQFDCT 92
Cdd:COG4181 27 ILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLFALDEDARARlrarHVGFVFQSFQLLPTLT 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 93 VEEIVLLgrtPhlsfLQKEKERD-YALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLD- 170
Cdd:COG4181 107 ALENVML---P----LELAGRRDaRARARALLERVGLGHRLDHYPAQLSGGEQQRVALARAFATEPAILFADEPTGNLDa 179
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 896617071 171 -----IkyqLDLLaivknLKIN-------VLaVLHDIQLACR 200
Cdd:COG4181 180 atgeqI---IDLL-----FELNrergttlVL-VTHDPALAAR 212
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
14-221 |
2.75e-22 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 95.17 E-value: 2.75e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 14 EKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQfNQLQFDCTV 93
Cdd:TIGR02203 344 DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQ-DVVLFNDTI 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 94 EEIVLLGRTphlsflqkeKERDYALVHDALVKVDMLEKKTRL-----------YSSLSGGEKQRVLLARALAQEPTLLLL 162
Cdd:TIGR02203 423 ANNIAYGRT---------EQADRAEIERALAAAYAQDFVDKLplgldtpigenGVLLSGGQRQRLAIARALLKDAPILIL 493
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 896617071 163 DEPTNHLDIK----YQLDLLAIVKNLKINVLA-VLHDIQLAcrysDYLYLMKEGEILYQGTPKE 221
Cdd:TIGR02203 494 DEATSALDNEserlVQAALERLMQGRTTLVIAhRLSTIEKA----DRIVVMDDGRIVERGTHNE 553
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
18-221 |
3.19e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 92.60 E-value: 3.19e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 18 LKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWS--LKETAKQMAVVTQF--NQLqFDCTV 93
Cdd:PRK13636 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRkgLMKLRESVGMVFQDpdNQL-FSASV 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 94 EEIVLLGRTpHLSFLQKEKERDyalVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIKY 173
Cdd:PRK13636 101 YQDVSFGAV-NLKLPEDEVRKR---VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMG 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 896617071 174 QLDLLAIV----KNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:PRK13636 177 VSEIMKLLvemqKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKE 228
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
32-228 |
4.22e-22 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 93.25 E-value: 4.22e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 32 TILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKEtaKQMAVVTQFNQLQFDCTVEEIVLLGrtphLSFLQKE 111
Cdd:PRK11432 36 TLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQ--RDICMVFQSYALFPHMSLGENVGYG----LKMLGVP 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 112 KERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIKYQLDLLAIVKNLK----IN 187
Cdd:PRK11432 110 KEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQqqfnIT 189
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 896617071 188 VLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKET-ITPESL 228
Cdd:PRK11432 190 SLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELyRQPASR 231
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
13-227 |
4.88e-22 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 91.67 E-value: 4.88e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSlKETAK------QMAVVTQFNQ 86
Cdd:PRK10419 23 QHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLN-RAQRKafrrdiQMVFQDSISA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 87 LQFDCTVEEIVllgRTP--HLSFLQKEKERdyALVHDALVKVDM-LEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLD 163
Cdd:PRK10419 102 VNPRKTVREII---REPlrHLLSLDKAERL--ARASEMLRAVDLdDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILD 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 896617071 164 EPTNHLDIKYQLDLLAIVKNLK----INVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETITPES 227
Cdd:PRK10419 177 EAVSNLDLVLQAGVIRLLKKLQqqfgTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLTFSS 244
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
13-223 |
5.58e-22 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 92.59 E-value: 5.58e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSlKETAKQMAVVTQFNQLQFDCT 92
Cdd:PRK13536 52 GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIGVVPQFDNLDLEFT 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 93 VEE-IVLLGRTPHLSflqkekERDYALVHDALVKVDMLEKK--TRLySSLSGGEKQRVLLARALAQEPTLLLLDEPTNHL 169
Cdd:PRK13536 131 VREnLLVFGRYFGMS------TREIEAVIPSLLEFARLESKadARV-SDLSGGMKRRLTLARALINDPQLLILDEPTTGL 203
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 896617071 170 D------IKYQL-DLLAIVKnlkiNVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETI 223
Cdd:PRK13536 204 DpharhlIWERLrSLLARGK----TILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALI 260
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
18-211 |
6.11e-22 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 90.60 E-value: 6.11e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 18 LKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEhwslkETAKQMAVVTQFNQLQFDCTVEEIV 97
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQIT-----EPGPDRMVVFQNYSLLPWLTVRENI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 98 LLGRTPHLSFLQKEKERdyALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDI----KY 173
Cdd:TIGR01184 76 ALAVDRVLPDLSKSERR--AIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDAltrgNL 153
|
170 180 190
....*....|....*....|....*....|....*...
gi 896617071 174 QLDLLAIVKNLKINVLAVLHDIQLACRYSDYLYLMKEG 211
Cdd:TIGR01184 154 QEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
21-224 |
7.53e-22 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 92.47 E-value: 7.53e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 21 VSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHwslkeTAK---------QMAVVTQ----FNQL 87
Cdd:COG4148 18 VDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGEVLQD-----SARgiflpphrrRIGYVFQearlFPHL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 88 qfdcTVEEIVLLG--RTPHlsflqkeKERDYALvhDALVKV----DMLEKKTRlysSLSGGEKQRVLLARALAQEPTLLL 161
Cdd:COG4148 93 ----SVRGNLLYGrkRAPR-------AERRISF--DEVVELlgigHLLDRRPA---TLSGGERQRVAIGRALLSSPRLLL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 896617071 162 LDEPTNHLDIKYQLDLL----AIVKNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETIT 224
Cdd:COG4148 157 MDEPLAALDLARKAEILpyleRLRDELDIPILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVLS 223
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
14-221 |
1.21e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 90.92 E-value: 1.21e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 14 EKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDG---KPLEH-WSLKETAKqMAVVTQFNQLqF 89
Cdd:PRK13633 22 EKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGldtSDEENlWDIRNKAG-MVFQNPDNQI-V 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 90 DCTVEEIVLLGrTPHLSFLQKE-KERdyalVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNH 168
Cdd:PRK13633 100 ATIVEEDVAFG-PENLGIPPEEiRER----VDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAM 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 896617071 169 LDIKYQLDLLAIVKNLK----INVLAVLHDIQLACRySDYLYLMKEGEILYQGTPKE 221
Cdd:PRK13633 175 LDPSGRREVVNTIKELNkkygITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKE 230
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
7-228 |
2.03e-21 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 89.47 E-value: 2.03e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 7 DIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQFNQ 86
Cdd:cd03252 7 RFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 87 LqFDCTVEEIVLLGRtPHLSFLQKEKERDYALVHDALVKV-----DMLEKKTrlySSLSGGEKQRVLLARALAQEPTLLL 161
Cdd:cd03252 87 L-FNRSIRDNIALAD-PGMSMERVIEAAKLAGAHDFISELpegydTIVGEQG---AGLSGGQRQRIAIARALIHNPRILI 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 896617071 162 LDEPTNHLDikYQLDlLAIVKNLKI-----NVLAVLHDIQlACRYSDYLYLMKEGEILYQGTPKETITPESL 228
Cdd:cd03252 162 FDEATSALD--YESE-HAIMRNMHDicagrTVIIIAHRLS-TVKNADRIIVMEKGRIVEQGSHDELLAENGL 229
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
13-232 |
5.79e-21 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 88.01 E-value: 5.79e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWslkETAKQM----AVVTQFNQLQ 88
Cdd:PRK11614 16 GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDW---QTAKIMreavAIVPEGRRVF 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 89 FDCTVEEIVLLG-----RTPHlsflQKEKERDYALVHdalvkvDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLD 163
Cdd:PRK11614 93 SRMTVEENLAMGgffaeRDQF----QERIKWVYELFP------RLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLD 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 896617071 164 EPTNHLD---IKYQLDLLAIVKNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETITPESLQTVY 232
Cdd:PRK11614 163 EPSLGLApiiIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLANEAVRSAY 234
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
2-223 |
6.37e-21 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 91.34 E-value: 6.37e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 2 DLICQDIHFGLG-EKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAV 80
Cdd:TIGR01193 473 DIVINDVSYSYGyGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINY 552
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 81 VTQfNQLQFDCTVEEIVLLGRTPHLSFLQKEKERDYALVHDALVKVDMlEKKTRLY---SSLSGGEKQRVLLARALAQEP 157
Cdd:TIGR01193 553 LPQ-EPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPL-GYQTELSeegSSISGGQKQRIALARALLTDS 630
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 158 TLLLLDEPTNHLDIkyqLDLLAIVKNL-KIN---VLAVLHDIQLACRySDYLYLMKEGEILYQGTPKETI 223
Cdd:TIGR01193 631 KVLILDESTSNLDT---ITEKKIVNNLlNLQdktIIFVAHRLSVAKQ-SDKIIVLDHGKIIEQGSHDELL 696
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
18-185 |
7.06e-21 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 90.85 E-value: 7.06e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 18 LKGVSLRVEGHQFHTILGPNGSGKTSLLKLL---YRqekADKGLISLDGKPLEHWSLKEtAKQM--AVVTQ----FNQLq 88
Cdd:COG1129 20 LDGVSLELRPGEVHALLGENGAGKSTLMKILsgvYQ---PDSGEILLDGEPVRFRSPRD-AQAAgiAIIHQelnlVPNL- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 89 fdcTVEEIVLLGRTP-HLSFLQKEKERDYALvhDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTN 167
Cdd:COG1129 95 ---SVAENIFLGREPrRGGLIDWRAMRRRAR--ELLARLGLDIDPDTPVGDLSVAQQQLVEIARALSRDARVLILDEPTA 169
|
170
....*....|....*...
gi 896617071 168 HLDIKYQLDLLAIVKNLK 185
Cdd:COG1129 170 SLTEREVERLFRIIRRLK 187
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
6-218 |
7.68e-21 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 87.67 E-value: 7.68e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 6 QDIHFGLGEKK--ILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQ 83
Cdd:cd03251 4 KNVTFRYPGDGppVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 84 fNQLQFDCTVEEIVLLGRtPHLSFLQKEKERDYALVHDALVKVD-----MLEKKTrlySSLSGGEKQRVLLARALAQEPT 158
Cdd:cd03251 84 -DVFLFNDTVAENIAYGR-PGATREEVEEAARAANAHEFIMELPegydtVIGERG---VKLSGGQRQRIAIARALLKDPP 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 896617071 159 LLLLDEPTNHLDIKYQLDLLAIVKNLKIN--VLAVLHDIQlACRYSDYLYLMKEGEILYQGT 218
Cdd:cd03251 159 ILILDEATSALDTESERLVQAALERLMKNrtTFVIAHRLS-TIENADRIVVLEDGKIVERGT 219
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
14-223 |
1.31e-20 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 88.60 E-value: 1.31e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 14 EKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLL--------------YRQEKADKGLISLD--------GKPLEHW-- 69
Cdd:PRK13651 19 ELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLnalllpdtgtiewiFKDEKNKKKTKEKEkvleklviQKTRFKKik 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 70 SLKETAKQMAVVTQFNQLQ-FDCTVEEIVLLGRtphLSF-LQKEKERDYALVHDALVKVDM--LEKKTrlySSLSGGEKQ 145
Cdd:PRK13651 99 KIKEIRRRVGVVFQFAEYQlFEQTIEKDIIFGP---VSMgVSKEEAKKRAAKYIELVGLDEsyLQRSP---FELSGGQKR 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 146 RVLLARALAQEPTLLLLDEPTNHLDIKYQLDLLAIVKNLKIN---VLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKET 222
Cdd:PRK13651 173 RVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQgktIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDI 252
|
.
gi 896617071 223 I 223
Cdd:PRK13651 253 L 253
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
3-230 |
1.44e-20 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 87.52 E-value: 1.44e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 3 LICQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQ-----EKADKGLISLDGKPLehWSLK----E 73
Cdd:PRK14239 6 LQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMndlnpEVTITGSIVYNGHNI--YSPRtdtvD 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 74 TAKQMAVVtqFNQLQ-FDCTVEEIVLLG-RTPHLsflqKEKERDYALVHDALVKVDML-EKKTRLYSS---LSGGEKQRV 147
Cdd:PRK14239 84 LRKEIGMV--FQQPNpFPMSIYENVVYGlRLKGI----KDKQVLDEAVEKSLKGASIWdEVKDRLHDSalgLSGGQQQRV 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 148 LLARALAQEPTLLLLDEPTNHLDI----KYQLDLLAIVKnlKINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKET- 222
Cdd:PRK14239 158 CIARVLATSPKIILLDEPTSALDPisagKIEETLLGLKD--DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMf 235
|
....*...
gi 896617071 223 ITPESLQT 230
Cdd:PRK14239 236 MNPKHKET 243
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
18-217 |
1.48e-20 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 86.65 E-value: 1.48e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 18 LKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHwSLKETAKQMAVVTQFNQLQFDCTVEEIV 97
Cdd:cd03266 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRLGFVSDSTGLYDRLTARENL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 98 -----LLGRTPHlSFLQKEKErdyalVHDALVKVDMLEKKTrlySSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIK 172
Cdd:cd03266 100 eyfagLYGLKGD-ELTARLEE-----LADRLGMEELLDRRV---GGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVM 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 896617071 173 YQLDLLAIVKNLKINVLAVL---HDIQLACRYSDYLYLMKEGEILYQG 217
Cdd:cd03266 171 ATRALREFIRQLRALGKCILfstHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
14-221 |
1.51e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 87.91 E-value: 1.51e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 14 EKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWS----LKETAKQMAVVTQFNQLQ- 88
Cdd:PRK13646 19 EHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTkdkyIRPVRKRIGMVFQFPESQl 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 89 FDCTVEEIVLLGRTPHLSFLQKEKERDYALVHDALVKVDMLEKKTrlySSLSGGEKQRVLLARALAQEPTLLLLDEPTNH 168
Cdd:PRK13646 99 FEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSP---FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAG 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 896617071 169 LDIKYQLDLLAIVKNLKIN----VLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:PRK13646 176 LDPQSKRQVMRLLKSLQTDenktIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKE 232
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
13-218 |
1.83e-20 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 89.74 E-value: 1.83e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVegHQFHT--ILGPNGSGKTSLLKLLYRQEKADkGLISLDGKPLEHWS---LKETAKQMAVVTQ--FN 85
Cdd:COG4172 297 GHVKAVDGVSLTL--RRGETlgLVGESGSGKSTLGLALLRLIPSE-GEIRFDGQDLDGLSrraLRPLRRRMQVVFQdpFG 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 86 QLQFDCTVEEIV---LLGRTPHLSflqkEKERDyALVHDALVKV----DMLEKktrlY-SSLSGGEKQRVLLARALAQEP 157
Cdd:COG4172 374 SLSPRMTVGQIIaegLRVHGPGLS----AAERR-ARVAEALEEVgldpAARHR----YpHEFSGGQRQRIAIARALILEP 444
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 896617071 158 TLLLLDEPTNHLDIKYQ---LDLLA-IVKNLKINVLAVLHDIQLAcRY-SDYLYLMKEGEILYQGT 218
Cdd:COG4172 445 KLLVLDEPTSALDVSVQaqiLDLLRdLQREHGLAYLFISHDLAVV-RAlAHRVMVMKDGKVVEQGP 509
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
6-221 |
1.83e-20 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 90.17 E-value: 1.83e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 6 QDIHFGL---GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVT 82
Cdd:TIGR00958 482 QDVSFSYpnrPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVG 561
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 83 QFNQLqFDCTVEEIVLLGRTphlsflQKEKERDYALVHDALVKvDMLEKKTRLY--------SSLSGGEKQRVLLARALA 154
Cdd:TIGR00958 562 QEPVL-FSGSVRENIAYGLT------DTPDEEIMAAAKAANAH-DFIMEFPNGYdtevgekgSQLSGGQKQRIAIARALV 633
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 896617071 155 QEPTLLLLDEPTNHLDIKYQLDLLAIVKNLKINVLAVLHDIQLaCRYSDYLYLMKEGEILYQGTPKE 221
Cdd:TIGR00958 634 RKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLST-VERADQILVLKKGSVVEMGTHKQ 699
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
14-221 |
2.42e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 87.49 E-value: 2.42e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 14 EKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWS----LKETAKQMAVVTQFNQLQ- 88
Cdd:PRK13649 19 EGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSknkdIKQIRKKVGLVFQFPESQl 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 89 FDCTVEEIVLLGrtPHLSFLQKEKERDYALVHDALVKV--DMLEKKTrlySSLSGGEKQRVLLARALAQEPTLLLLDEPT 166
Cdd:PRK13649 99 FEETVLKDVAFG--PQNFGVSQEEAEALAREKLALVGIseSLFEKNP---FELSGGQMRRVAIAGILAMEPKILVLDEPT 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 896617071 167 NHLDIKYQLDLLAIVKNLK---INVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:PRK13649 174 AGLDPKGRKELMTLFKKLHqsgMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKD 231
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
13-229 |
2.94e-20 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 89.38 E-value: 2.94e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTS----LLKLLyrqekADKGLISLDGKPLEHWSLKET---AKQMAVVTQ-- 83
Cdd:PRK15134 297 DHNVVVKNISFTLRPGETLGLVGESGSGKSTtglaLLRLI-----NSQGEIWFDGQPLHNLNRRQLlpvRHRIQVVFQdp 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 84 FNQLQFDCTVEEIVLLG---RTPHLSFLQKEKErdyalVHDALVKVDM-LEKKTRLYSSLSGGEKQRVLLARALAQEPTL 159
Cdd:PRK15134 372 NSSLNPRLNVLQIIEEGlrvHQPTLSAAQREQQ-----VIAVMEEVGLdPETRHRYPAEFSGGQRQRIAIARALILKPSL 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 160 LLLDEPTNHLDIKYQLDLLAIVKNL----KINVLAVLHDIQLACRYSDYLYLMKEGEILYQG-------TPKETITPESL 228
Cdd:PRK15134 447 IILDEPTSSLDKTVQAQILALLKSLqqkhQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGdcervfaAPQQEYTRQLL 526
|
.
gi 896617071 229 Q 229
Cdd:PRK15134 527 A 527
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
3-232 |
4.42e-20 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 85.72 E-value: 4.42e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 3 LICQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQ-MAVV 81
Cdd:PRK10895 4 LTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRgIGYL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 82 TQ----FNQLQ-FDCTVEeiVLLGRTPhlsfLQKEKERDYAlvHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQE 156
Cdd:PRK10895 84 PQeasiFRRLSvYDNLMA--VLQIRDD----LSAEQREDRA--NELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAAN 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 896617071 157 PTLLLLDEPTNHLDIKYQLDLLAIVKNLKINVLAVL---HDIQLACRYSDYLYLMKEGEILYQGTPKETITPESLQTVY 232
Cdd:PRK10895 156 PKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLitdHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVKRVY 234
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
17-213 |
6.02e-20 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 85.25 E-value: 6.02e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 17 ILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAK----QMAVVTQFNQLQFDCT 92
Cdd:PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAElrnqKLGFIYQFHHLLPDFT 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 93 VEEIV----LLGRTPHlsflQKEKERdyalVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNH 168
Cdd:PRK11629 104 ALENVamplLIGKKKP----AEINSR----ALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGN 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 896617071 169 LDIKYQLDLLAIVKNLKIN----VLAVLHDIQLACRYSDYLYlMKEGEI 213
Cdd:PRK11629 176 LDARNADSIFQLLGELNRLqgtaFLVVTHDLQLAKRMSRQLE-MRDGRL 223
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
6-219 |
6.82e-20 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 85.50 E-value: 6.82e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 6 QDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLL-----YrqeKADKGLISLDGKPLEHWSLKETAK---- 76
Cdd:COG0396 4 KNLHVSVEGKEILKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLmghpkY---EVTSGSILLDGEDILELSPDERARagif 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 77 ---QMAV----VTQFNQLQfdcTVEEIVLLGRTPHLSFLQKEKErdYAlvhdALVKVD--MLEKktRLYSSLSGGEKQRV 147
Cdd:COG0396 81 lafQYPVeipgVSVSNFLR---TALNARRGEELSAREFLKLLKE--KM----KELGLDedFLDR--YVNEGFSGGEKKRN 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 148 LLARALAQEPTLLLLDEPTNHLDIkyqlDLLAIVknlkINVLAVLHDIQLAC----------RY--SDYLYLMKEGEILY 215
Cdd:COG0396 150 EILQMLLLEPKLAILDETDSGLDI----DALRIV----AEGVNKLRSPDRGIliithyqrilDYikPDFVHVLVDGRIVK 221
|
....
gi 896617071 216 QGTP 219
Cdd:COG0396 222 SGGK 225
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
14-170 |
8.50e-20 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 84.56 E-value: 8.50e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 14 EKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQFNQLqFDCTV 93
Cdd:cd03245 16 EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTL-FYGTL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 94 EEIVLLGRTPHlsflqkEKER-----DYALVHDALVK----VDML--EKKtrlySSLSGGEKQRVLLARALAQEPTLLLL 162
Cdd:cd03245 95 RDNITLGAPLA------DDERilraaELAGVTDFVNKhpngLDLQigERG----RGLSGGQRQAVALARALLNDPPILLL 164
|
....*...
gi 896617071 163 DEPTNHLD 170
Cdd:cd03245 165 DEPTSAMD 172
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
1-218 |
9.23e-20 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 85.06 E-value: 9.23e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 1 MDLICQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDG------KPLEHWSLKET 74
Cdd:COG4161 1 MSIQLKNINCFYGSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGhqfdfsQKPSEKAIRLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 75 AKQMAVVTQFNQLQFDCTVEE------IVLLGrtphlsfLQKEKERDYALVHdaLVKVDMLEKKTRLYSSLSGGEKQRVL 148
Cdd:COG4161 81 RQKVGMVFQQYNLWPHLTVMEnlieapCKVLG-------LSKEQAREKAMKL--LARLRLTDKADRFPLHLSGGQQQRVA 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 896617071 149 LARALAQEPTLLLLDEPTNHLDIKYQLDLLAIVKNLK---INVLAVLHDIQLACRYSDYLYLMKEGEILYQGT 218
Cdd:COG4161 152 IARALMMEPQVLLFDEPTAALDPEITAQVVEIIRELSqtgITQVIVTHEVEFARKVASQVVYMEKGRIIEQGD 224
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
3-221 |
9.84e-20 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 85.09 E-value: 9.84e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 3 LICQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKL------LYRQEKADkGLISLDGKPL--EHWSLKET 74
Cdd:COG1117 12 IEVRNLNVYYGDKQALKDINLDIPENKVTALIGPSGCGKSTLLRClnrmndLIPGARVE-GEILLDGEDIydPDVDVVEL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 75 AKQMAVVTQ----FNQlqfdcTVEEIVLLGrtPHLSFLQKEKERDyALVHDALVKVdML--EKKTRLYSS---LSGGEKQ 145
Cdd:COG1117 91 RRRVGMVFQkpnpFPK-----SIYDNVAYG--LRLHGIKSKSELD-EIVEESLRKA-ALwdEVKDRLKKSalgLSGGQQQ 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 146 RVLLARALAQEPTLLLLDEPTNHLD------IKyqlDLLAIVKNlKINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTP 219
Cdd:COG1117 162 RLCIARALAVEPEVLLMDEPTSALDpistakIE---ELILELKK-DYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPT 237
|
..
gi 896617071 220 KE 221
Cdd:COG1117 238 EQ 239
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
14-232 |
1.15e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 85.65 E-value: 1.15e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 14 EKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLE----HWSLKETAKQMAVVTQFNQLQ- 88
Cdd:PRK13641 19 EKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITpetgNKNLKKLRKKVSLVFQFPEAQl 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 89 FDCTVEEIVLLGRTPHLSFLQKEKERDYALVHDALVKVDMLEKKTrlySSLSGGEKQRVLLARALAQEPTLLLLDEPTNH 168
Cdd:PRK13641 99 FENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSP---FELSGGQMRRVAIAGVMAYEPEILCLDEPAAG 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 896617071 169 LDIKYQLDLLAIVKNLKI---NVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETIT-PESLQTVY 232
Cdd:PRK13641 176 LDPEGRKEMMQLFKDYQKaghTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSdKEWLKKHY 243
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
3-220 |
1.40e-19 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 83.35 E-value: 1.40e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 3 LICQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLL-----YrqeKADKGLISLDGKPLehwslketakq 77
Cdd:cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTImghpkY---EVTEGEILFKGEDI----------- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 78 mavvtqfnqlqFDCTVEEIVLLGRTphLSFlQKEKERDYALVHDALVKVDMlekktrlysSLSGGEKQRVLLARALAQEP 157
Cdd:cd03217 67 -----------TDLPPEERARLGIF--LAF-QYPPEIPGVKNADFLRYVNE---------GFSGGEKKRNEILQLLLLEP 123
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 896617071 158 TLLLLDEPTNHLDIkyqlDLLAIV-------KNLKINVLAVLHDIQLAcRY--SDYLYLMKEGEILYQGTPK 220
Cdd:cd03217 124 DLAILDEPDSGLDI----DALRLVaevinklREEGKSVLIITHYQRLL-DYikPDRVHVLYDGRIVKSGDKE 190
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
18-223 |
3.13e-19 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 85.86 E-value: 3.13e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 18 LKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWS---LKETA-KQMAVVTQFNQLQFDCTV 93
Cdd:PRK10070 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISdaeLREVRrKKIAMVFQSFALMPHMTV 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 94 EEIVLLGRtpHLSFLQKEKERDYALvhDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLD--- 170
Cdd:PRK10070 124 LDNTAFGM--ELAGINAEERREKAL--DALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDpli 199
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 896617071 171 -IKYQLDLLAIVKNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETI 223
Cdd:PRK10070 200 rTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
6-221 |
3.22e-19 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 84.05 E-value: 3.22e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 6 QDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWS---LKETAKQMAVVT 82
Cdd:PRK11831 11 RGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSrsrLYTVRKRMSMLF 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 83 QFNQLQFDCTVEEIVLLGRTPHLsflQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLL 162
Cdd:PRK11831 91 QSGALFTDMNVFDNVAYPLREHT---QLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMF 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 896617071 163 DEPTNHLDikyQLDLLAIVK-------NLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:PRK11831 168 DEPFVGQD---PITMGVLVKliselnsALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQA 230
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
1-221 |
4.76e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 83.92 E-value: 4.76e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 1 MDLICQDIHFGLG-----EKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLE----HWSL 71
Cdd:PRK13634 1 MDITFQKVEHRYQyktpfERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITagkkNKKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 72 KETAKQMAVVTQF--NQLqFDCTVEEIVLLGrtPhLSFLQKEKERDyALVHDALVKVDMLEK-KTRLYSSLSGGEKQRVL 148
Cdd:PRK13634 81 KPLRKKVGIVFQFpeHQL-FEETVEKDICFG--P-MNFGVSEEDAK-QKAREMIELVGLPEElLARSPFELSGGQMRRVA 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 896617071 149 LARALAQEPTLLLLDEPTNHLDIKYQLDLLAIVKNLK----INVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:PRK13634 156 IAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHkekgLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
2-179 |
5.02e-19 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 82.02 E-value: 5.02e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 2 DLICQDihfglGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLeHWSLKETAKQMAVV 81
Cdd:TIGR01189 5 NLACSR-----GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPL-AEQRDEPHENILYL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 82 TQFNQLQFDCTVEEivllgrtpHLSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLL 161
Cdd:TIGR01189 79 GHLPGLKPELSALE--------NLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWI 150
|
170
....*....|....*...
gi 896617071 162 LDEPTNHLDiKYQLDLLA 179
Cdd:TIGR01189 151 LDEPTTALD-KAGVALLA 167
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
6-218 |
5.13e-19 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 85.64 E-value: 5.13e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 6 QDIHFGL-GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQ- 83
Cdd:COG5265 361 ENVSFGYdPERPILKGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQDIRDVTQASLRAAIGIVPQd 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 84 ---FNQlqfdcTVEEIVLLGRtPHLSflQKEKER--DYALVHDAlvkVDMLEKKtrlYSS--------LSGGEKQRVLLA 150
Cdd:COG5265 441 tvlFND-----TIAYNIAYGR-PDAS--EEEVEAaaRAAQIHDF---IESLPDG---YDTrvgerglkLSGGEKQRVAIA 506
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 896617071 151 RALAQEPTLLLLDEPTNHLDIKYQLDLLAIVKNLKIN--VLAVLHdiqlacRYS-----DYLYLMKEGEILYQGT 218
Cdd:COG5265 507 RTLLKNPPILIFDEATSALDSRTERAIQAALREVARGrtTLVIAH------RLStivdaDEILVLEAGRIVERGT 575
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
13-221 |
5.77e-19 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 85.57 E-value: 5.77e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQFNQLqFDCT 92
Cdd:COG4618 343 SKRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQWDREELGRHIGYLPQDVEL-FDGT 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 93 VEE-IVLLGrtphlsflqkekERDYALVHDA--LVKV-DMLEK-----KTRLY---SSLSGGEKQRVLLARALAQEPTLL 160
Cdd:COG4618 422 IAEnIARFG------------DADPEKVVAAakLAGVhEMILRlpdgyDTRIGeggARLSGGQRQRIGLARALYGDPRLV 489
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 896617071 161 LLDEPTNHLDIKYQLDLLAIVKNLK---INVLAVLHDIQLAcRYSDYLYLMKEGEILYQGTPKE 221
Cdd:COG4618 490 VLDEPNSNLDDEGEAALAAAIRALKargATVVVITHRPSLL-AAVDKLLVLRDGRVQAFGPRDE 552
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
6-212 |
6.73e-19 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 83.16 E-value: 6.73e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 6 QDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADkGLISLDGKpLEHW---------SLKETAK 76
Cdd:PRK14258 11 NNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELE-SEVRVEGR-VEFFnqniyerrvNLNRLRR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 77 QMAVV----TQFNQLQFDCTVEEIVLLGRTPHLsflqkekERDyALVHDALVKVDML-EKKTRLYSS---LSGGEKQRVL 148
Cdd:PRK14258 89 QVSMVhpkpNLFPMSVYDNVAYGVKIVGWRPKL-------EID-DIVESALKDADLWdEIKHKIHKSaldLSGGQQQRLC 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 896617071 149 LARALAQEPTLLLLDEPTNHLDIKYQLDLLAIVKNLK----INVLAVLHDIQLACRYSDYLYLMKEGE 212
Cdd:PRK14258 161 IARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRlrseLTMVIVSHNLHQVSRLSDFTAFFKGNE 228
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
12-213 |
9.13e-19 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 81.84 E-value: 9.13e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 12 LGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETA---KQMAVVTQFNQLQ 88
Cdd:PRK10908 12 LGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPflrRQIGMIFQDHHLL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 89 FDCTVEEIVLLGRTPHLSFLQKEKERdyalVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNH 168
Cdd:PRK10908 92 MDRTVYDNVAIPLIIAGASGDDIRRR----VSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGN 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 896617071 169 LDIKYQLDLLAIVKNLK---INVLAVLHDIQLACRYSDYLYLMKEGEI 213
Cdd:PRK10908 168 LDDALSEGILRLFEEFNrvgVTVLMATHDIGLISRRSYRMLTLSDGHL 215
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
1-171 |
1.29e-18 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 81.07 E-value: 1.29e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 1 MDLICQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKEtakQMAV 80
Cdd:PRK13539 1 MMLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAE---ACHY 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 81 VTQFNQLQFDCTVEEIvllgrtphLSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLL 160
Cdd:PRK13539 78 LGHRNAMKPALTVAEN--------LEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIW 149
|
170
....*....|.
gi 896617071 161 LLDEPTNHLDI 171
Cdd:PRK13539 150 ILDEPTAALDA 160
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
18-228 |
1.48e-18 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 84.31 E-value: 1.48e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 18 LKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQ---MavVTQ----FNQLqfd 90
Cdd:COG3845 21 NDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKPVRIRSPRDAIALgigM--VHQhfmlVPNL--- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 91 cTVEEIVLLGRTPHLSFLQKEKE---------RDYAL-VH-DALVkvdmlekktrlySSLSGGEKQRVLLARALAQEPTL 159
Cdd:COG3845 96 -TVAENIVLGLEPTKGGRLDRKAararirelsERYGLdVDpDAKV------------EDLSVGEQQRVEILKALYRGARI 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 896617071 160 LLLDEPTNHL-----DikyqlDLLAIVKNLKINVLAVL---HDIQLACRYSDYLYLMKEGEILYQGTPKETiTPESL 228
Cdd:COG3845 163 LILDEPTAVLtpqeaD-----ELFEILRRLAAEGKSIIfitHKLREVMAIADRVTVLRRGKVVGTVDTAET-SEEEL 233
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
9-200 |
1.68e-18 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 81.36 E-value: 1.68e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 9 HFGLGEKK--ILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPL----EHWSLKETAKQMAVVT 82
Cdd:PRK10584 15 SVGQGEHElsILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLhqmdEEARAKLRAKHVGFVF 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 83 QFNQLQFDCTVEEIVLLgrtPHLsfLQKEKERDYALVHDALVKVDMLEKKTR-LYSSLSGGEKQRVLLARALAQEPTLLL 161
Cdd:PRK10584 95 QSFMLIPTLNALENVEL---PAL--LRGESSRQSRNGAKALLEQLGLGKRLDhLPAQLSGGEQQRVALARAFNGRPDVLF 169
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 896617071 162 LDEPTNHLDIKYQ---LDLL-AIVKNLKINVLAVLHDIQLACR 200
Cdd:PRK10584 170 ADEPTGNLDRQTGdkiADLLfSLNREHGTTLILVTHDLQLAAR 212
|
|
| SapF |
COG4167 |
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms]; |
10-221 |
1.78e-18 |
|
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms];
Pssm-ID: 443328 [Multi-domain] Cd Length: 265 Bit Score: 81.81 E-value: 1.78e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 10 FGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQ-----F 84
Cdd:COG4167 21 FRRQQFEAVKPVSFTLEAGQTLAIIGENGSGKSTLAKMLAGIIEPTSGEILINGHKLEYGDYKYRCKHIRMIFQdpntsL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 85 N-QLQFDCTVEEIVLLgrTPHLSflqkEKERdYALVHDALVKVDMLEKKTRLY-SSLSGGEKQRVLLARALAQEPTLLLL 162
Cdd:COG4167 101 NpRLNIGQILEEPLRL--NTDLT----AEER-EERIFATLRLVGLLPEHANFYpHMLSSGQKQRVALARALILQPKIIIA 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 896617071 163 DEPTNHLDI--KYQLD--LLAIVKNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:COG4167 174 DEALAALDMsvRSQIInlMLELQEKLGISYIYVSQHLGIVKHISDKVLVMHQGEVVEYGKTAE 236
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
6-196 |
1.80e-18 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 84.23 E-value: 1.80e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 6 QDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLdGKPLEhwslketakqmavVTQFN 85
Cdd:PRK11147 323 ENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKLE-------------VAYFD 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 86 Q----LQFDCTVE--------EIVLLGRTPH-LSFLQkekerDYaLVHDalvKVDMLEKKtrlysSLSGGEKQRVLLARA 152
Cdd:PRK11147 389 QhraeLDPEKTVMdnlaegkqEVMVNGRPRHvLGYLQ-----DF-LFHP---KRAMTPVK-----ALSGGERNRLLLARL 454
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 896617071 153 LAQEPTLLLLDEPTNHLDIKyQLDLL-AIVKNLKINVLAVLHDIQ 196
Cdd:PRK11147 455 FLKPSNLLILDEPTNDLDVE-TLELLeELLDSYQGTVLLVSHDRQ 498
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
33-221 |
2.11e-18 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 81.17 E-value: 2.11e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 33 ILGPNGSGKTSLLKLLYRQEKADKGLISLDGKplEHWSLKETAKQMAVVTQFNQLQFDCTVEEIVLLGRTP--HLSFLQK 110
Cdd:PRK10771 30 ILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQ--DHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPglKLNAAQR 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 111 EKERDYAlvhdalVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIKYQLDLLAIVKNL----KI 186
Cdd:PRK10771 108 EKLHAIA------RQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVcqerQL 181
|
170 180 190
....*....|....*....|....*....|....*
gi 896617071 187 NVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:PRK10771 182 TLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDE 216
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
13-223 |
2.21e-18 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 83.70 E-value: 2.21e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLL--YRQEKADKGLI----------------SLDGKP--------- 65
Cdd:TIGR03269 11 DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLrgMDQYEPTSGRIiyhvalcekcgyverpSKVGEPcpvcggtle 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 66 ---LEHWSLKET-----AKQMAVVTQFN-QLQFDCTVEEIVLlgRTPHLSFLQKEKERDYALvhDALVKVDMLEKKTRLY 136
Cdd:TIGR03269 91 peeVDFWNLSDKlrrriRKRIAIMLQRTfALYGDDTVLDNVL--EALEEIGYEGKEAVGRAV--DLIEMVQLSHRITHIA 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 137 SSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIK----YQLDLLAIVKNLKINVLAVLHDIQLACRYSDYLYLMKEGE 212
Cdd:TIGR03269 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQtaklVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGE 246
|
250
....*....|.
gi 896617071 213 ILYQGTPKETI 223
Cdd:TIGR03269 247 IKEEGTPDEVV 257
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
7-221 |
3.42e-18 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 81.04 E-value: 3.42e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 7 DIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYR-----QEKADKGLISLDGKPLEHWSLK--ETAKQMA 79
Cdd:PRK14267 9 NLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRllelnEEARVEGEVRLFGRNIYSPDVDpiEVRREVG 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 80 VVTQFNQLQFDCTVEEIVLLGRTphLSFLQKEKERDYALVHDALVKVDMLEK-KTRLY---SSLSGGEKQRVLLARALAQ 155
Cdd:PRK14267 89 MVFQYPNPFPHLTIYDNVAIGVK--LNGLVKSKKELDERVEWALKKAALWDEvKDRLNdypSNLSGGQRQRLVIARALAM 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 156 EPTLLLLDEPTNHLD----IKYQLDLLAIVKNLKInvLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:PRK14267 167 KPKILLMDEPTANIDpvgtAKIEELLFELKKEYTI--VLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK 234
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
13-217 |
5.04e-18 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 79.63 E-value: 5.04e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHwslkETAKQMAVVTQFNQLQFDCT 92
Cdd:cd03269 11 GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGYLPEERGLYPKMK 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 93 V-EEIVLLGRtphLSFLQKEKERdyALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDI 171
Cdd:cd03269 87 ViDQLVYLAQ---LKGLKKEEAR--RRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDP 161
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 896617071 172 KYQLDLLAIVKNLKIN---VLAVLHDIQLACRYSDYLYLMKEGEILYQG 217
Cdd:cd03269 162 VNVELLKDVIRELARAgktVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
17-175 |
6.13e-18 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 79.82 E-value: 6.13e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 17 ILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQFNQLqFDCTVEEI 96
Cdd:cd03248 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVL-FARSLQDN 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 97 VLLGrTPHLSFLQKEKERDYALVHDALVKV------DMLEKKtrlySSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLD 170
Cdd:cd03248 108 IAYG-LQSCSFECVKEAAQKAHAHSFISELasgydtEVGEKG----SQLSGGQKQRVAIARALIRNPQVLILDEATSALD 182
|
....*
gi 896617071 171 IKYQL 175
Cdd:cd03248 183 AESEQ 187
|
|
| galliderm_ABC |
TIGR03740 |
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 ... |
3-217 |
8.47e-18 |
|
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Pssm-ID: 163452 [Multi-domain] Cd Length: 223 Bit Score: 79.37 E-value: 8.47e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 3 LICQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKpleHWSLKETAKQMAVV- 81
Cdd:TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGH---PWTRKDLHKIGSLIe 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 82 --------TQFNQLQFDCTVEeivllgrtpHLSFlqkekerdyALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARAL 153
Cdd:TIGR03740 78 spplyenlTARENLKVHTTLL---------GLPD---------SRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIAL 139
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 896617071 154 AQEPTLLLLDEPTNHLD-IKYQlDLLAIVKNLKINVLAV------LHDIQLAcrySDYLYLMKEGEILYQG 217
Cdd:TIGR03740 140 LNHPKLLILDEPTNGLDpIGIQ-ELRELIRSFPEQGITVilsshiLSEVQQL---ADHIGIISEGVLGYQG 206
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
8-221 |
8.61e-18 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 80.87 E-value: 8.61e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 8 IHFGLGEK--KILKGVSLRVEGHQFHTILGPNGSGKT----SLLKLLyRQEKADKGLISLDGKPLehWSLKETA------ 75
Cdd:COG0444 9 VYFPTRRGvvKAVDGVSFDVRRGETLGLVGESGSGKStlarAILGLL-PPPGITSGEILFDGEDL--LKLSEKElrkirg 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 76 KQMAVVTQ-----FNQLQfdcTVEEIvlLGRTPHLSFLQKEKERdYALVHDALVKVDMLEKKTRLYS---SLSGGEKQRV 147
Cdd:COG0444 86 REIQMIFQdpmtsLNPVM---TVGDQ--IAEPLRIHGGLSKAEA-RERAIELLERVGLPDPERRLDRyphELSGGMRQRV 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 896617071 148 LLARALAQEPTLLLLDEPTNHLD--IKYQ-LDLLA-IVKNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:COG0444 160 MIARALALEPKLLIADEPTTALDvtIQAQiLNLLKdLQRELGLAILFITHDLGVVAEIADRVAVMYAGRIVEEGPVEE 237
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
3-196 |
8.63e-18 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 79.06 E-value: 8.63e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 3 LICQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKAD---KGLISLDGKPLEHwsLKETAKQMA 79
Cdd:COG4136 2 LSLENLTITLGGRPLLAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPAfsaSGEVLLNGRRLTA--LPAEQRRIG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 80 VVTQfNQLQFdctveeivllgrtPHLSFLQ----------KEKERDyALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLL 149
Cdd:COG4136 80 ILFQ-DDLLF-------------PHLSVGEnlafalpptiGRAQRR-ARVEQALEEAGLAGFADRDPATLSGGQRARVAL 144
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 896617071 150 ARALAQEPTLLLLDEPTNHLDIKYQLDLLAIV----KNLKINVLAVLHDIQ 196
Cdd:COG4136 145 LRALLAEPRALLLDEPFSKLDAALRAQFREFVfeqiRQRGIPALLVTHDEE 195
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
14-228 |
9.65e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 80.66 E-value: 9.65e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 14 EKKILKGVSLRVEGHQFHTILGPNGSGKTSL----------------LKLLYRQEKADKGLISLDGKPLEHWSLKETAKQ 77
Cdd:PRK13631 38 ELVALNNISYTFEKNKIYFIIGNSGSGKSTLvthfnglikskygtiqVGDIYIGDKKNNHELITNPYSKKIKNFKELRRR 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 78 MAVVTQFNQLQ-FDCTVEEIVLLGRTPhlsfLQKEKERDYALVHDALVKVDMleKKTRLYSS---LSGGEKQRVLLARAL 153
Cdd:PRK13631 118 VSMVFQFPEYQlFKDTIEKDIMFGPVA----LGVKKSEAKKLAKFYLNKMGL--DDSYLERSpfgLSGGQKRRVAIAGIL 191
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 896617071 154 AQEPTLLLLDEPTNHLDIKYQLDLLAIVKNLKIN---VLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETITPESL 228
Cdd:PRK13631 192 AIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANnktVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHI 269
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
3-194 |
1.07e-17 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 78.99 E-value: 1.07e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 3 LICQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVT 82
Cdd:PRK10247 8 LQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 83 QFNQLqFDCTVEEIVLL-----GRTPHLSFLQKEKERdYALVHdalvkvDMLEKKTrlySSLSGGEKQRVLLARALAQEP 157
Cdd:PRK10247 88 QTPTL-FGDTVYDNLIFpwqirNQQPDPAIFLDDLER-FALPD------TILTKNI---AELSGGEKQRISLIRNLQFMP 156
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 896617071 158 TLLLLDEPTNHLDIKYQLDLLAI----VKNLKINVLAVLHD 194
Cdd:PRK10247 157 KVLLLDEITSALDESNKHNVNEIihryVREQNIAVLWVTHD 197
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
9-235 |
1.60e-17 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 80.23 E-value: 1.60e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 9 HFGLGEKKI--LKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWS---LKETAKQMAVVTQ 83
Cdd:PRK11153 10 VFPQGGRTIhaLNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSekeLRKARRQIGMIFQ 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 84 -FNQLQfDCTVEEIVLLgrtPhLSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLL 162
Cdd:PRK11153 90 hFNLLS-SRTVFDNVAL---P-LELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLC 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 163 DEPTNHLD------IkyqLDLLA-IVKNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQGT-------PKETITPESL 228
Cdd:PRK11153 165 DEATSALDpattrsI---LELLKdINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTvsevfshPKHPLTREFI 241
|
....*..
gi 896617071 229 QTVYGVQ 235
Cdd:PRK11153 242 QSTLHLD 248
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
15-228 |
1.67e-17 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 78.99 E-value: 1.67e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 15 KKILKGVSLRVEGHQFH-----TILGPNGSGKTSLLKLLYRQEKADKGLIsldGKPLEHWSLKetakqmavvTQFNQLQF 89
Cdd:cd03237 7 KKTLGEFTLEVEGGSISeseviGILGPNGIGKTTFIKMLAGVLKPDEGDI---EIELDTVSYK---------PQYIKADY 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 90 DCTVEEIvLLGRTP-HLSFLQKEKErdyalVHDALVKVDMLEkktRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNH 168
Cdd:cd03237 75 EGTVRDL-LSSITKdFYTHPYFKTE-----IAKPLQIEQILD---REVPELSGGELQRVAIAACLSKDADIYLLDEPSAY 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 896617071 169 LDIKYQLDLLAIVKNLKIN----VLAVLHDIQLACRYSDYLylmkegeILYQGTP-KETI--TPESL 228
Cdd:cd03237 146 LDVEQRLMASKVIRRFAENnektAFVVEHDIIMIDYLADRL-------IVFEGEPsVNGVanPPQSL 205
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
14-217 |
1.79e-17 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 78.53 E-value: 1.79e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 14 EKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGkpLEHWSLK-ETAKQMAVVT-QFNQLQFDC 91
Cdd:cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG--LVPWKRRkKFLRRIGVVFgQKTQLWWDL 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 92 TV-EEIVLLGRTPHLSFLQKEKERDYalVHDALVKVDMLEKKTRlysSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLD 170
Cdd:cd03267 111 PViDSFYLLAAIYDLPPARFKKRLDE--LSELLDLEELLDTPVR---QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 896617071 171 IKYQLD----LLAIVKNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQG 217
Cdd:cd03267 186 VVAQENirnfLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
2-230 |
1.89e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 79.67 E-value: 1.89e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 2 DLICQDIHFGLGEK-----KILKGVSLRVEGHQFHTILGPNGSGKTSLLKLlyrqekADKGLISLDGK--------PLEH 68
Cdd:PRK13645 6 DIILDNVSYTYAKKtpfefKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQL------TNGLIISETGQtivgdyaiPANL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 69 WSLKETA---KQMAVVTQFNQLQ-FDCTVEEIVLLGRTphlsFLQKEKERDYALVHDALVKVDMLEKKT-RLYSSLSGGE 143
Cdd:PRK13645 80 KKIKEVKrlrKEIGLVFQFPEYQlFQETIEKDIAFGPV----NLGENKQEAYKKVPELLKLVQLPEDYVkRSPFELSGGQ 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 144 KQRVLLARALAQEPTLLLLDEPTNHLDIKYQLDLLAIV----KNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTP 219
Cdd:PRK13645 156 KRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFerlnKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSP 235
|
250
....*....|.
gi 896617071 220 KETITPESLQT 230
Cdd:PRK13645 236 FEIFSNQELLT 246
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
1-218 |
1.93e-17 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 78.52 E-value: 1.93e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 1 MDLICQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGkplEHWSLKET--AKQM 78
Cdd:PRK11124 1 MSIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAG---NHFDFSKTpsDKAI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 79 AVVTQ-----FNQLQFdctveeivllgrTPHLSFLQ-------------KEKERDYALVHdaLVKVDMLEKKTRLYSSLS 140
Cdd:PRK11124 78 RELRRnvgmvFQQYNL------------WPHLTVQQnlieapcrvlglsKDQALARAEKL--LERLRLKPYADRFPLHLS 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 141 GGEKQRVLLARALAQEPTLLLLDEPTNHLDIKYQLDLLAIVKNLK---INVLAVLHDIQLACRYSDYLYLMKEGEILYQG 217
Cdd:PRK11124 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAetgITQVIVTHEVEVARKTASRVVYMENGHIVEQG 223
|
.
gi 896617071 218 T 218
Cdd:PRK11124 224 D 224
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
6-218 |
2.42e-17 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 80.78 E-value: 2.42e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 6 QDIHFGL-GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQf 84
Cdd:PRK13657 338 DDVSFSYdNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQ- 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 85 NQLQFDCTVEEIVLLGRTPhlsflQKEKErdyalVHDALVKV---DMLEKKTRLY--------SSLSGGEKQRVLLARAL 153
Cdd:PRK13657 417 DAGLFNRSIEDNIRVGRPD-----ATDEE-----MRAAAERAqahDFIERKPDGYdtvvgergRQLSGGERQRLAIARAL 486
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 154 AQEPTLLLLDEPTNHLDI----KYQLDLLAIVKNLKINVLAvlHdiQLAC-RYSDYLYLMKEGEILYQGT 218
Cdd:PRK13657 487 LKDPPILILDEATSALDVeteaKVKAALDELMKGRTTFIIA--H--RLSTvRNADRILVFDNGRVVESGS 552
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
16-219 |
2.62e-17 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 77.45 E-value: 2.62e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 16 KILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQFNQLqFDCTVEe 95
Cdd:cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTL-FSGTIR- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 96 ivllgrtphlSFLQKEKERDYALVHDALvkvdmleKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDikYQL 175
Cdd:cd03369 100 ----------SNLDPFDEYSDEEIYGAL-------RVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASID--YAT 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 896617071 176 DLLaIVKNL-----KINVLAVLHDIQLACRYsDYLYLMKEGEILYQGTP 219
Cdd:cd03369 161 DAL-IQKTIreeftNSTILTIAHRLRTIIDY-DKILVMDAGEVKEYDHP 207
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
16-221 |
3.15e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 79.01 E-value: 3.15e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 16 KILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWS----LKETAKQMAVVTQFNQLQ-FD 90
Cdd:PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSkqkeIKPVRKKVGVVFQFPESQlFE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 91 CTVEEIVLLGrtPHLSFLQKEKERDYALVhdalvKVDMLEKKTRLYS----SLSGGEKQRVLLARALAQEPTLLLLDEPT 166
Cdd:PRK13643 100 ETVLKDVAFG--PQNFGIPKEKAEKIAAE-----KLEMVGLADEFWEkspfELSGGQMRRVAIAGILAMEPEVLVLDEPT 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 896617071 167 NHLDIKYQLDLLAIVKNLK---INVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:PRK13643 173 AGLDPKARIEMMQLFESIHqsgQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
15-197 |
4.53e-17 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 79.85 E-value: 4.53e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 15 KKILKGVSLRVEGHQFH-----TILGPNGSGKTSLLKLLYRQEKADKGLISldgkplehWSLKETAKqmavvTQFNQLQF 89
Cdd:PRK13409 347 TKKLGDFSLEVEGGEIYegeviGIVGPNGIGKTTFAKLLAGVLKPDEGEVD--------PELKISYK-----PQYIKPDY 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 90 DCTVEEiVLLGRTPHL--SFLQKEKERDYALVhdalvkvDMLEKKTRlysSLSGGEKQRVLLARALAQEPTLLLLDEPTN 167
Cdd:PRK13409 414 DGTVED-LLRSITDDLgsSYYKSEIIKPLQLE-------RLLDKNVK---DLSGGELQRVAIAACLSRDADLYLLDEPSA 482
|
170 180 190
....*....|....*....|....*....|....*
gi 896617071 168 HLDIKYQLdLLA-----IVKNLKINVLAVLHDIQL 197
Cdd:PRK13409 483 HLDVEQRL-AVAkairrIAEEREATALVVDHDIYM 516
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
13-170 |
4.53e-17 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 76.76 E-value: 4.53e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLeHWSLKETAKQMAVVTQFNQLQFDCT 92
Cdd:cd03231 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPL-DFQRDSIARGLLYLGHAPGIKTTLS 89
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 896617071 93 VEEivllgrtpHLSFLQKEKERDYalVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLD 170
Cdd:cd03231 90 VLE--------NLRFWHADHSDEQ--VEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALD 157
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
11-213 |
6.50e-17 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 75.93 E-value: 6.50e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 11 GLGEKKILKGVSLRV-EGhqfhTIL---GPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQ-MAVVTqfn 85
Cdd:cd03215 9 GLSVKGAVRDVSFEVrAG----EIVgiaGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAgIAYVP--- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 86 qlqfdctveeivllgrtphlsflqkEKERDYALVHDALVKVDMLekktrLYSSLSGGEKQRVLLARALAQEPTLLLLDEP 165
Cdd:cd03215 82 -------------------------EDRKREGLVLDLSVAENIA-----LSSLLSGGNQQKVVLARWLARDPRVLILDEP 131
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 896617071 166 TNHLDIKYQLDLLAIVKNLKINVLAVL---HDIQLACRYSDYLYLMKEGEI 213
Cdd:cd03215 132 TRGVDVGAKAEIYRLIRELADAGKAVLlisSELDELLGLCDRILVMYEGRI 182
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
13-221 |
7.35e-17 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 77.84 E-value: 7.35e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETA---------KQMAVVTQ 83
Cdd:COG4152 12 GDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDPEDRRRIGylpeerglyPKMKVGEQ 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 84 fnqlqfdctveeIVLLGRTPHLSfLQKEKERdyalVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLD 163
Cdd:COG4152 92 ------------LVYLARLKGLS-KAEAKRR----ADEWLERLGLGDRANKKVEELSKGNQQKVQLIAALLHDPELLILD 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 896617071 164 EPTNHLD-IKYQLdLLAIVKNLKINVLAVL---HDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:COG4152 155 EPFSGLDpVNVEL-LKDVIRELAAKGTTVIfssHQMELVEELCDRIVIINKGRKVLSGSVDE 215
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
6-220 |
9.29e-17 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 77.08 E-value: 9.29e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 6 QDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYrqekadkGLISLDGKPLEHwslkETAKQMAVVTQfn 85
Cdd:PRK09544 8 ENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVL-------GLVAPDEGVIKR----NGKLRIGYVPQ-- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 86 QLQFDCTVEEIVllGRtphlsFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEP 165
Cdd:PRK09544 75 KLYLDTTLPLTV--NR-----FLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEP 147
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 896617071 166 TNHLDIKYQLDLLAIVKNLK----INVLAVLHDIQLACRYSDYLyLMKEGEILYQGTPK 220
Cdd:PRK09544 148 TQGVDVNGQVALYDLIDQLRreldCAVLMVSHDLHLVMAKTDEV-LCLNHHICCSGTPE 205
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
15-197 |
1.16e-16 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 78.67 E-value: 1.16e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 15 KKILKGVSLRVEGHQFH-----TILGPNGSGKTSLLKLLYRQEKADKGlisldgkplehwSLKETAKqMAVVTQFNQLQF 89
Cdd:COG1245 348 TKSYGGFSLEVEGGEIRegevlGIVGPNGIGKTTFAKILAGVLKPDEG------------EVDEDLK-ISYKPQYISPDY 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 90 DCTVEEIVLLGRTPHL--SFLQKEKERDYALVHdalvkvdMLEKKTrlySSLSGGEKQRVLLARALAQEPTLLLLDEPTN 167
Cdd:COG1245 415 DGTVEEFLRSANTDDFgsSYYKTEIIKPLGLEK-------LLDKNV---KDLSGGELQRVAIAACLSRDADLYLLDEPSA 484
|
170 180 190
....*....|....*....|....*....|....*
gi 896617071 168 HLDIKYQLdLLA-----IVKNLKINVLAVLHDIQL 197
Cdd:COG1245 485 HLDVEQRL-AVAkairrFAENRGKTAMVVDHDIYL 518
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
12-211 |
1.77e-16 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 75.93 E-value: 1.77e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 12 LGEKKI--LKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKG--LISLDGKPL------EHWSLKETAKQMAVV 81
Cdd:COG4778 19 QGGKRLpvLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGsiLVRHDGGWVdlaqasPREILALRRRTIGYV 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 82 TQFnqLQFdctveeivlLGRTPHL-----SFLQKEKERDYAL--VHDALvkvDMLEKKTRLYSS----LSGGEKQRVLLA 150
Cdd:COG4778 99 SQF--LRV---------IPRVSALdvvaePLLERGVDREEARarARELL---ARLNLPERLWDLppatFSGGEQQRVNIA 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 896617071 151 RALAQEPTLLLLDEPTNHLDIKYQLDLLAIVKNLKIN---VLAVLHDIQLACRYSDYLYLMKEG 211
Cdd:COG4778 165 RGFIADPPLLLLDEPTASLDAANRAVVVELIEEAKARgtaIIGIFHDEEVREAVADRVVDVTPF 228
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
7-230 |
2.13e-16 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 76.67 E-value: 2.13e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 7 DIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGL-----ISLDGKPLEHW-SLKETAKQMAV 80
Cdd:PRK14271 26 NLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYrysgdVLLGGRSIFNYrDVLEFRRRVGM 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 81 VTQFNQlQFDCTVEEIVLLGRTPHLSFLQKEKErdyALVHDALVKVDMLEK-KTRLYSS---LSGGEKQRVLLARALAQE 156
Cdd:PRK14271 106 LFQRPN-PFPMSIMDNVLAGVRAHKLVPRKEFR---GVAQARLTEVGLWDAvKDRLSDSpfrLSGGQQQLLCLARTLAVN 181
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 896617071 157 PTLLLLDEPTNHLDIKYQLDLLAIVKNL--KINVLAVLHDIQLACRYSDYLYLMKEGEILYQGtPKETI--TPESLQT 230
Cdd:PRK14271 182 PEVLLLDEPTSALDPTTTEKIEEFIRSLadRLTVIIVTHNLAQAARISDRAALFFDGRLVEEG-PTEQLfsSPKHAET 258
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
13-221 |
3.03e-16 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 77.78 E-value: 3.03e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLL-YRQEKADKGL--ISLDGKPLEhwslketAKQMAVVTQFNQlQF 89
Cdd:TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALaFRSPKGVKGSgsVLLNGMPID-------AKEMRAISAYVQ-QD 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 90 DC-----TVEEivllgrtpHLSF---------LQKEKERdyALVHDALVKVDMLE-KKTR-----LYSSLSGGEKQRVLL 149
Cdd:TIGR00955 108 DLfiptlTVRE--------HLMFqahlrmprrVTKKEKR--ERVDEVLQALGLRKcANTRigvpgRVKGLSGGERKRLAF 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 896617071 150 ARALAQEPTLLLLDEPTNHLDIKYQLDLLAIVKNLKIN---VLAVLHD--IQLACRYsDYLYLMKEGEILYQGTPKE 221
Cdd:TIGR00955 178 ASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKgktIICTIHQpsSELFELF-DKIILMAEGRVAYLGSPDQ 253
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
16-211 |
4.21e-16 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 76.87 E-value: 4.21e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 16 KILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKET-AKQMAVVTQFNQLQFDCTVE 94
Cdd:PRK11288 18 KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAAlAAGVAIIYQELHLVPEMTVA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 95 EIVLLGRTPH-LSFLQKEKERDYALvhDALVKVDM-LEKKTRLySSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIK 172
Cdd:PRK11288 98 ENLYLGQLPHkGGIVNRRLLNYEAR--EQLEHLGVdIDPDTPL-KYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAR 174
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 896617071 173 YQLDLLAIVKNLKIN---VLAVLHDIQLACRYSDYLYLMKEG 211
Cdd:PRK11288 175 EIEQLFRVIRELRAEgrvILYVSHRMEEIFALCDAITVFKDG 216
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
15-218 |
4.71e-16 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 77.19 E-value: 4.71e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 15 KKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLL-----YRqekadkGLISLDGKPLEHWSLKETAKQMAVVTQFNQLqF 89
Cdd:PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALlgflpYQ------GSLKINGIELRELDPESWRKHLSWVGQNPQL-P 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 90 DCTVEEIVLLGRtPHLSFLQkekerdyalVHDALVKVDMLEKKTRLY-----------SSLSGGEKQRVLLARALAQEPT 158
Cdd:PRK11174 436 HGTLRDNVLLGN-PDASDEQ---------LQQALENAWVSEFLPLLPqgldtpigdqaAGLSVGQAQRLALARALLQPCQ 505
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 896617071 159 LLLLDEPTNHLDIKY-QLDLLAIVKN-LKINVLAVLHDI-QLACrySDYLYLMKEGEILYQGT 218
Cdd:PRK11174 506 LLLLDEPTASLDAHSeQLVMQALNAAsRRQTTLMVTHQLeDLAQ--WDQIWVMQDGQIVQQGD 566
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
14-223 |
9.97e-16 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 76.21 E-value: 9.97e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 14 EKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQFNQLqFDCTV 93
Cdd:PRK11176 355 EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHL-FNDTI 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 94 EEIVLLGRTPHLSFLQKEKERDYALVHDALVKVD------MLEKKTrlysSLSGGEKQRVLLARALAQEPTLLLLDEPTN 167
Cdd:PRK11176 434 ANNIAYARTEQYSREQIEEAARMAYAMDFINKMDngldtvIGENGV----LLSGGQRQRIAIARALLRDSPILILDEATS 509
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 896617071 168 HLDIKYQLDLLAIVKNLKIN--VLAVLHdiqlacRYS-----DYLYLMKEGEILYQGTPKETI 223
Cdd:PRK11176 510 ALDTESERAIQAALDELQKNrtSLVIAH------RLStiekaDEILVVEDGEIVERGTHAELL 566
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
11-228 |
1.31e-15 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 75.44 E-value: 1.31e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 11 GLGEKKILKGVSLRV---EghqfhtIL---GPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQ-MAVVTQ 83
Cdd:COG1129 261 GLSVGGVVRDVSFSVragE------ILgiaGLVGAGRTELARALFGADPADSGEIRLDGKPVRIRSPRDAIRAgIAYVPE 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 84 -------FNQLqfdcTVEE---IVLLGRTPHLSFLQKEKERDYAL-VHDAL-VKVDMLEKKTRlysSLSGGEKQRVLLAR 151
Cdd:COG1129 335 drkgeglVLDL----SIREnitLASLDRLSRGGLLDRRRERALAEeYIKRLrIKTPSPEQPVG---NLSGGNQQKVVLAK 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 152 ALAQEPTLLLLDEPTNHLDI--KYqlDLLAIVKNLKINVLAVL---HDIQLACRYSDYLYLMKEGEIlyQGT-PKETITP 225
Cdd:COG1129 408 WLATDPKVLILDEPTRGIDVgaKA--EIYRLIRELAAEGKAVIvisSELPELLGLSDRILVMREGRI--VGElDREEATE 483
|
...
gi 896617071 226 ESL 228
Cdd:COG1129 484 EAI 486
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
14-185 |
2.04e-15 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 75.13 E-value: 2.04e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 14 EKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQFNQLqFDCTV 93
Cdd:PRK10789 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL-FSDTV 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 94 EEIVLLGRtPHLSFLQKEKERDYALVHDalvkvDMLekktRL---YSS--------LSGGEKQRVLLARALAQEPTLLLL 162
Cdd:PRK10789 406 ANNIALGR-PDATQQEIEHVARLASVHD-----DIL----RLpqgYDTevgergvmLSGGQKQRISIARALLLNAEILIL 475
|
170 180
....*....|....*....|....*
gi 896617071 163 DEPTNHLD--IKYQldllaIVKNLK 185
Cdd:PRK10789 476 DDALSAVDgrTEHQ-----ILHNLR 495
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
17-223 |
2.25e-15 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 73.20 E-value: 2.25e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 17 ILKGVSLRVEGHQFHTILGPNGSGKT----SLLKLLYRQEKADKGLISLDGKPLEHWSLKetAKQMAVVTQ-----FNQL 87
Cdd:PRK10418 18 LVHGVSLTLQRGRVLALVGGSGSGKSltcaAALGILPAGVRQTAGRVLLDGKPVAPCALR--GRKIATIMQnprsaFNPL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 88 QF--DCTVEEIVLLGRTPhlsflqkekeRDYALVHdALVKVDMLEKKT--RLYS-SLSGGEKQRVLLARALAQEPTLLLL 162
Cdd:PRK10418 96 HTmhTHARETCLALGKPA----------DDATLTA-ALEAVGLENAARvlKLYPfEMSGGMLQRMMIALALLCEAPFIIA 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 896617071 163 DEPTNHLDIKYQ---LDLLA-IVKNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQGtPKETI 223
Cdd:PRK10418 165 DEPTTDLDVVAQariLDLLEsIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQG-DVETL 228
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
13-201 |
2.67e-15 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 74.59 E-value: 2.67e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLrveghQFHT-----ILGPNGSGKTSLLKLLYRQEKADKGlisldgkplEHWsLKETAKqMAVVTQFNQL 87
Cdd:TIGR03719 16 PKKEILKDISL-----SFFPgakigVLGLNGAGKSTLLRIMAGVDKDFNG---------EAR-PQPGIK-VGYLPQEPQL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 88 QFDCTVEEIVLLGrTPHLSFLQKEKERDYALVHDALVKVDML-EKKTRL------------------------------- 135
Cdd:TIGR03719 80 DPTKTVRENVEEG-VAEIKDALDRFNEISAKYAEPDADFDKLaAEQAELqeiidaadawdldsqleiamdalrcppwdad 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 896617071 136 YSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIKYQLDLLAIVKNLKINVLAVLHDiqlacRY 201
Cdd:TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLERHLQEYPGTVVAVTHD-----RY 219
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
18-231 |
3.23e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 73.10 E-value: 3.23e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 18 LKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWS-LKETAKQMAVVTQFNQLQF-DCTVEE 95
Cdd:PRK13644 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSkLQGIRKLVGIVFQNPETQFvGRTVEE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 96 IVLLGrtPHLSFLQKEKERDyaLVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIKYQL 175
Cdd:PRK13644 98 DLAFG--PENLCLPPIEIRK--RVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGI 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 896617071 176 DLLAIVKNLK---INVLAVLHDIQlACRYSDYLYLMKEGEILYQGTPKETITPESLQTV 231
Cdd:PRK13644 174 AVLERIKKLHekgKTIVYITHNLE-ELHDADRIIVMDRGKIVLEGEPENVLSDVSLQTL 231
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
3-171 |
3.45e-15 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 74.54 E-value: 3.45e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 3 LICQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLIsldgkpleHWSLKETAKQMAvvt 82
Cdd:PRK15064 320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV--------KWSENANIGYYA--- 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 83 QFNQLQFDCTV---------------EEIV--LLGRtphLSFLQKEKERDyalvhdalVKVdmlekktrlyssLSGGEKQ 145
Cdd:PRK15064 389 QDHAYDFENDLtlfdwmsqwrqegddEQAVrgTLGR---LLFSQDDIKKS--------VKV------------LSGGEKG 445
|
170 180
....*....|....*....|....*.
gi 896617071 146 RVLLARALAQEPTLLLLDEPTNHLDI 171
Cdd:PRK15064 446 RMLFGKLMMQKPNVLVMDEPTNHMDM 471
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
15-212 |
3.90e-15 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 71.73 E-value: 3.90e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 15 KKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKplehwslketakqMAVVTQFNQLQFDcTVE 94
Cdd:cd03250 18 SFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGS-------------IAYVSQEPWIQNG-TIR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 95 EIVLlgrtphlsFLQKEKERDYALVHDA--LVK-VDMLEK--KTRLYS---SLSGGEKQRVLLARALAQEPTLLLLDEPT 166
Cdd:cd03250 84 ENIL--------FGKPFDEERYEKVIKAcaLEPdLEILPDgdLTEIGEkgiNLSGGQKQRISLARAVYSDADIYLLDDPL 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 896617071 167 NHLDIK-----YQLDLLAIVKNLKINVLaVLHDIQLaCRYSDYLYLMKEGE 212
Cdd:cd03250 156 SAVDAHvgrhiFENCILGLLLNNKTRIL-VTHQLQL-LPHADQIVVLDNGR 204
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
16-185 |
8.27e-15 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 73.23 E-value: 8.27e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 16 KILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQ-MAVVTQFNQLQFDCTVE 94
Cdd:PRK10982 12 KALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENgISMVHQELNLVLQRSVM 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 95 EIVLLGRTPHLSFL--QKEKERDYALVHDAL-VKVDMLEKktrlYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDI 171
Cdd:PRK10982 92 DNMWLGRYPTKGMFvdQDKMYRDTKAIFDELdIDIDPRAK----VATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTE 167
|
170
....*....|....
gi 896617071 172 KYQLDLLAIVKNLK 185
Cdd:PRK10982 168 KEVNHLFTIIRKLK 181
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
9-170 |
1.35e-14 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 70.37 E-value: 1.35e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 9 HFGLG----EKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQekadkglisldgkplehwsLKETAKQMAVVTQF 84
Cdd:COG2401 33 AFGVElrvvERYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGA-------------------LKGTPVAGCVDVPD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 85 NQLQFDCTVEEIVLLGRTPHLSFlqkekerdyALVHDA-LVKVDMLEKKtrlYSSLSGGEKQRVLLARALAQEPTLLLLD 163
Cdd:COG2401 94 NQFGREASLIDAIGRKGDFKDAV---------ELLNAVgLSDAVLWLRR---FKELSTGQKFRFRLALLLAERPKLLVID 161
|
....*..
gi 896617071 164 EPTNHLD 170
Cdd:COG2401 162 EFCSHLD 168
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
33-217 |
1.48e-14 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 71.83 E-value: 1.48e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 33 ILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPL--------------------------EHWSLKETAKQ-MAvvtQFN 85
Cdd:PRK11144 29 IFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLfdaekgiclppekrrigyvfqdarlfPHYKVRGNLRYgMA---KSM 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 86 QLQFDCTVEeivLLGRTPHLSflqkekerdyalvhdalvkvdmlekktRLYSSLSGGEKQRVLLARALAQEPTLLLLDEP 165
Cdd:PRK11144 106 VAQFDKIVA---LLGIEPLLD---------------------------RYPGSLSGGEKQRVAIGRALLTAPELLLMDEP 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 896617071 166 TNHLDIKYQLDLLAIVKNL----KINVLAVLHDIQLACRYSDYLYLMKEGEILYQG 217
Cdd:PRK11144 156 LASLDLPRKRELLPYLERLareiNIPILYVSHSLDEILRLADRVVVLEQGKVKAFG 211
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
18-221 |
1.73e-14 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 72.51 E-value: 1.73e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 18 LKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQ-MAVVTQFNQLQFDCTVEEI 96
Cdd:PRK09700 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLgIGIIYQELSVIDELTVLEN 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 97 VLLGRTPHLSFL-------QKEKERDYALVHDALVKVDMLEKktrlYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHL 169
Cdd:PRK09700 101 LYIGRHLTKKVCgvniidwREMRVRAAMMLLRVGLKVDLDEK----VANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSL 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 896617071 170 DIKYQLDLLAIVKNLKINVLAVL---HDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:PRK09700 177 TNKEVDYLFLIMNQLRKEGTAIVyisHKLAEIRRICDRYTVMKDGSSVCSGMVSD 231
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
13-201 |
1.96e-14 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 72.07 E-value: 1.96e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLrveghQFHT-----ILGPNGSGKTSLLKLL-----------YRQEKADKGLIS----LDgkplEHWSLK 72
Cdd:PRK11819 18 PKKQILKDISL-----SFFPgakigVLGLNGAGKSTLLRIMagvdkefegeaRPAPGIKVGYLPqepqLD----PEKTVR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 73 ET-----AKQMAVVTQFNQL---------QFDCTVEEIVLLgrtphlsflqkEKERDYALVHDALVKVDMLEKKTRL--- 135
Cdd:PRK11819 89 ENveegvAEVKAALDRFNEIyaayaepdaDFDALAAEQGEL-----------QEIIDAADAWDLDSQLEIAMDALRCppw 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 896617071 136 ---YSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIKYQLDLLAIVKNLKINVLAVLHDiqlacRY 201
Cdd:PRK11819 158 dakVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHD-----RY 221
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
33-217 |
2.84e-14 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 70.34 E-value: 2.84e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 33 ILGPNGSGKTSLLKLLYRQEKADKGLISL---DGKPLEHWSLKETAKQM------AVVTQfNQLQfdctveeivllGRTP 103
Cdd:PRK11701 37 IVGESGSGKTTLLNALSARLAPDAGEVHYrmrDGQLRDLYALSEAERRRllrtewGFVHQ-HPRD-----------GLRM 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 104 HLSF-------LQKEKERDYALVHDA----LVKVDM-LEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDI 171
Cdd:PRK11701 105 QVSAggnigerLMAVGARHYGDIRATagdwLERVEIdAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDV 184
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 896617071 172 KYQ---LDLL-AIVKNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQG 217
Cdd:PRK11701 185 SVQarlLDLLrGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESG 234
|
|
| sufC |
TIGR01978 |
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six ... |
3-219 |
2.92e-14 |
|
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic () or associated with the membrane (). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]
Pssm-ID: 273907 [Multi-domain] Cd Length: 243 Bit Score: 69.98 E-value: 2.92e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 3 LICQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEK--ADKGLISLDGKPLEHWSLKETAK---- 76
Cdd:TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSyeVTSGTILFKGQDLLELEPDERARaglf 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 77 ---QMAV-VTQFNQLQFDCTVEEIVLLGRT-PHLSFLQKEKERDYALvhdALVKVD--MLEKKtrLYSSLSGGEKQRVLL 149
Cdd:TIGR01978 81 lafQYPEeIPGVSNLEFLRSALNARRSARGeEPLDLLDFEKLLKEKL---ALLDMDeeFLNRS--VNEGFSGGEKKRNEI 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 896617071 150 ARALAQEPTLLLLDEPTNHLDIkyqlDLLAIV-------KNLKINVLAVLHDIQLAcRY--SDYLYLMKEGEILYQGTP 219
Cdd:TIGR01978 156 LQMALLEPKLAILDEIDSGLDI----DALKIVaeginrlREPDRSFLIITHYQRLL-NYikPDYVHVLLDGRIVKSGDV 229
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
13-219 |
3.83e-14 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 69.06 E-value: 3.83e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQFNQLqFDCT 92
Cdd:cd03244 15 NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVL-FSGT 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 93 VeeivllgRtphlSFLQKEKERDYALVHDALVKVDMLE----KKTRLY-------SSLSGGEKQRVLLARALAQEPTLLL 161
Cdd:cd03244 94 I-------R----SNLDPFGEYSDEELWQALERVGLKEfvesLPGGLDtvveeggENLSVGQRQLLCLARALLRKSKILV 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 896617071 162 LDEPTNHLDikYQLDLLaIVKNLKIN-----VLAVLHDIQ--LACrysDYLYLMKEGEILYQGTP 219
Cdd:cd03244 163 LDEATASVD--PETDAL-IQKTIREAfkdctVLTIAHRLDtiIDS---DRILVLDKGRVVEFDSP 221
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
11-230 |
5.59e-14 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 70.91 E-value: 5.59e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 11 GLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAkqmavvtQFNQLQFD 90
Cdd:PRK10535 17 GEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALA-------QLRREHFG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 91 CTVEEIVLLgrtPHLSFLQ----------KEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLL 160
Cdd:PRK10535 90 FIFQRYHLL---SHLTAAQnvevpavyagLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVI 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 896617071 161 LLDEPTNHLDIKYQLDLLAIVKNLKI---NVLAVLHDIQLACRySDYLYLMKEGEIL----YQGTPKETITPESLQT 230
Cdd:PRK10535 167 LADEPTGALDSHSGEEVMAILHQLRDrghTVIIVTHDPQVAAQ-AERVIEIRDGEIVrnppAQEKVNVAGGTEPVVN 242
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
13-212 |
8.59e-14 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 70.24 E-value: 8.59e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLL---YRQEKADkGLISLDGKPLEHWSLKET-AKQMAVVTQFNQLQ 88
Cdd:TIGR02633 12 GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILsgvYPHGTWD-GEIYWSGSPLKASNIRDTeRAGIVIIHQELTLV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 89 FDCTVEEIVLLGrtpHLSFLQKEKERDYALVHDA-----LVKVDMLeKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLD 163
Cdd:TIGR02633 91 PELSVAENIFLG---NEITLPGGRMAYNAMYLRAknllrELQLDAD-NVTRPVGDYGGGQQQLVEIAKALNKQARLLILD 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 896617071 164 EPTNHLDIKYQLDLLAIVKNLKINVLAVL---HDIQLACRYSDYLYLMKEGE 212
Cdd:TIGR02633 167 EPSSSLTEKETEILLDIIRDLKAHGVACVyisHKLNEVKAVCDTICVIRDGQ 218
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
33-237 |
9.23e-14 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 68.93 E-value: 9.23e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 33 ILGPNGSGKTSLLKLLYRQEKADKGliSLDGKP-----LEHW----------SLKETAKQMAVVTQFNQL---QFDCTVE 94
Cdd:cd03236 31 LVGPNGIGKSTALKILAGKLKPNLG--KFDDPPdwdeiLDEFrgselqnyftKLLEGDVKVIVKPQYVDLipkAVKGKVG 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 95 EIvllgrtphlsfLQKEKERDyalVHDALVKVDMLEK-KTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIKY 173
Cdd:cd03236 109 EL-----------LKKKDERG---KLDELVDQLELRHvLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQ 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 896617071 174 QLDLLAIVKNL---KINVLAVLHDIQLACRYSDYLYlmkegeILYqGTPketitpeslqTVYGVQSQ 237
Cdd:cd03236 175 RLNAARLIRELaedDNYVLVVEHDLAVLDYLSDYIH------CLY-GEP----------GAYGVVTL 224
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
14-218 |
1.12e-13 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 70.12 E-value: 1.12e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 14 EKKILKGVSLRVEGHQFHTILGPNGSGKT----SLLKLL------YRQekadkGLISLDGKPLEHWSLKE----TAKQMA 79
Cdd:PRK15134 21 VRTVVNDVSLQIEAGETLALVGESGSGKSvtalSILRLLpsppvvYPS-----GDIRFHGESLLHASEQTlrgvRGNKIA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 80 VVTQ-----FNQLQfdcTVE----EIVLLGRTphlsfLQKEKERDYALvhDALVKVDMLEKKTRLYS---SLSGGEKQRV 147
Cdd:PRK15134 96 MIFQepmvsLNPLH---TLEkqlyEVLSLHRG-----MRREAARGEIL--NCLDRVGIRQAAKRLTDyphQLSGGERQRV 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 896617071 148 LLARALAQEPTLLLLDEPTNHLDIKYQLDLLAIVKNLK----INVLAVLHDIQLACRYSDYLYLMKEGEILYQGT 218
Cdd:PRK15134 166 MIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQqelnMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNR 240
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
16-185 |
1.51e-13 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 69.57 E-value: 1.51e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 16 KILKGVSLRVEGHQFHTILGPNGSGKTSLLKLL---YRQEKADkGLISLDGKPLEHWSLKET-AKQMAVVTQFNQLQFDC 91
Cdd:PRK13549 19 KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLsgvYPHGTYE-GEIIFEGEELQASNIRDTeRAGIAIIHQELALVKEL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 92 TVEEIVLLGRTPHlsflqKEKERDYALVHD------ALVKVDMlEKKTRLySSLSGGEKQRVLLARALAQEPTLLLLDEP 165
Cdd:PRK13549 98 SVLENIFLGNEIT-----PGGIMDYDAMYLraqkllAQLKLDI-NPATPV-GNLGLGQQQLVEIAKALNKQARLLILDEP 170
|
170 180
....*....|....*....|
gi 896617071 166 TNHLDIKYQLDLLAIVKNLK 185
Cdd:PRK13549 171 TASLTESETAVLLDIIRDLK 190
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
33-171 |
1.76e-13 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 69.58 E-value: 1.76e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 33 ILGPNGSGKTSLLKLLYRQEKADKGLISLDgkplehwslkETAKqMAVVTQF-NQLQFDCTVEEIVLLGrtphlsflqke 111
Cdd:TIGR03719 353 VIGPNGAGKSTLFRMITGQEQPDSGTIEIG----------ETVK-LAYVDQSrDALDPNKTVWEEISGG----------- 410
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 896617071 112 kerdyalvHDaLVKVDMLEKKTRLY---------------SSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDI 171
Cdd:TIGR03719 411 --------LD-IIKLGKREIPSRAYvgrfnfkgsdqqkkvGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDV 476
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
33-237 |
3.46e-13 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 68.68 E-value: 3.46e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 33 ILGPNGSGKTSLLKLLYRQEKADKGliSLDGKP-----LEHWS----------LKETAKQMAVVTQFNQL---QFDCTVE 94
Cdd:PRK13409 104 ILGPNGIGKTTAVKILSGELIPNLG--DYEEEPswdevLKRFRgtelqnyfkkLYNGEIKVVHKPQYVDLipkVFKGKVR 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 95 EIvllgrtphlsfLQKEKERDyalVHDALVK-VDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIKY 173
Cdd:PRK13409 182 EL-----------LKKVDERG---KLDEVVErLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQ 247
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 896617071 174 QLDLLAIVKNL--KINVLAVLHDIQLACRYSDYLylmkegEILYqGTPketitpeslqTVYGVQSQ 237
Cdd:PRK13409 248 RLNVARLIRELaeGKYVLVVEHDLAVLDYLADNV------HIAY-GEP----------GAYGVVSK 296
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
6-218 |
4.30e-13 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 66.97 E-value: 4.30e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 6 QDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLL--YRQEKADKGLISLDGKPLehwsLKETAKQMAVVTQ 83
Cdd:CHL00131 11 KNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIagHPAYKILEGDILFKGESI----LDLEPEERAHLGI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 84 FNQLQFDCT---VEEIVLLgrtpHLSFLQKEKERD---------YALVHDALVKVDMLEK-KTR-LYSSLSGGEKQR-VL 148
Cdd:CHL00131 87 FLAFQYPIEipgVSNADFL----RLAYNSKRKFQGlpeldplefLEIINEKLKLVGMDPSfLSRnVNEGFSGGEKKRnEI 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 896617071 149 LARALAqEPTLLLLDEPTNHLDIkyqlDLLAIVKNlKINVLAVLHD-IQLACRYS--------DYLYLMKEGEILYQGT 218
Cdd:CHL00131 163 LQMALL-DSELAILDETDSGLDI----DALKIIAE-GINKLMTSENsIILITHYQrlldyikpDYVHVMQNGKIIKTGD 235
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
33-171 |
6.12e-13 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 67.84 E-value: 6.12e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 33 ILGPNGSGKTSLLKLLYRQEKADKGLISLdGkplehwslkETAKqMAVVTQF-NQLQFDCTVEEIVLLGRtphlsflqke 111
Cdd:PRK11819 355 IIGPNGAGKSTLFKMITGQEQPDSGTIKI-G---------ETVK-LAYVDQSrDALDPNKTVWEEISGGL---------- 413
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 896617071 112 kerDYalvhdalVKVDMLEKKTRLYSS---------------LSGGEKQRVLLARALAQEPTLLLLDEPTNHLDI 171
Cdd:PRK11819 414 ---DI-------IKVGNREIPSRAYVGrfnfkggdqqkkvgvLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDV 478
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
18-171 |
6.23e-13 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 67.74 E-value: 6.23e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 18 LKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQ-----------MAVVTQFnq 86
Cdd:COG3845 274 LKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSPRERRRLgvayipedrlgRGLVPDM-- 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 87 lqfdcTVEEIVLLG--RTPHLS---FLQKEKERDYA--LVHDALVKVDMLEKKTRlysSLSGGEKQRVLLARALAQEPTL 159
Cdd:COG3845 352 -----SVAENLILGryRRPPFSrggFLDRKAIRAFAeeLIEEFDVRTPGPDTPAR---SLSGGNQQKVILARELSRDPKL 423
|
170
....*....|..
gi 896617071 160 LLLDEPTNHLDI 171
Cdd:COG3845 424 LIAAQPTRGLDV 435
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
11-213 |
1.07e-12 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 67.12 E-value: 1.07e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 11 GLGEKKILKGVSLR-VEGHQFhTILGPNGSGKTSLLKLLYRQEKADKGLISLdgkplehwslketAKQMAVvTQFNQLQF 89
Cdd:PRK10636 321 GYGDRIILDSIKLNlVPGSRI-GLLGRNGAGKSTLIKLLAGELAPVSGEIGL-------------AKGIKL-GYFAQHQL 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 90 dctveEIVLLGRTP--HLSFL-QKEKE---RDYalVHDALVKVDMLEKKTRLYSslsGGEKQRVLLARALAQEPTLLLLD 163
Cdd:PRK10636 386 -----EFLRADESPlqHLARLaPQELEqklRDY--LGGFGFQGDKVTEETRRFS---GGEKARLVLALIVWQRPNLLLLD 455
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 896617071 164 EPTNHLDIKYQLDLLAIVKNLKINVLAVLHDIQLACRYSDYLYLMKEGEI 213
Cdd:PRK10636 456 EPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKV 505
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
14-223 |
1.28e-12 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 66.83 E-value: 1.28e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 14 EKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADK---GLISLDGKPLehwslKETAKQMAVVTQFNQLQFD 90
Cdd:PLN03211 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNftgTILANNRKPT-----KQILKRTGFVTQDDILYPH 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 91 CTVEEIVL---LGRTPHlSFLQKEKER--DYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEP 165
Cdd:PLN03211 155 LTVRETLVfcsLLRLPK-SLTKQEKILvaESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 233
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 896617071 166 TNHLDIKYQLDLLAIVKNL----KINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETI 223
Cdd:PLN03211 234 TSGLDATAAYRLVLTLGSLaqkgKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAM 295
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
13-223 |
2.36e-12 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 64.72 E-value: 2.36e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVE-----GhqfhtILGPNGSGKTSLLKLLYRQEKADKGLISLDGK---PLE-----HWSLketakqma 79
Cdd:COG1134 37 EEFWALKDVSFEVErgesvG-----IIGRNGAGKSTLLKLIAGILEPTSGRVEVNGRvsaLLElgagfHPEL-------- 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 80 vvtqfnqlqfdcTVEE-IVLLGRTphLSFLQKE-KER-----DYALVHDALvkvDMlekKTRLYSSlsgGEKQRVLLARA 152
Cdd:COG1134 104 ------------TGREnIYLNGRL--LGLSRKEiDEKfdeivEFAELGDFI---DQ---PVKTYSS---GMRARLAFAVA 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 896617071 153 LAQEPTLLLLDEPTNHLDIKYQLDLLAIVKNLKIN---VLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETI 223
Cdd:COG1134 161 TAVDPDILLVDEVLAVGDAAFQKKCLARIRELRESgrtVIFVSHSMGAVRRLCDRAIWLEKGRLVMDGDPEEVI 234
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
13-170 |
2.56e-12 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 63.67 E-value: 2.56e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHwSLKETAKQMAVVTQFNQLQFDCT 92
Cdd:PRK13538 12 DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRR-QRDEYHQDLLYLGHQPGIKTELT 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 896617071 93 VEEivllgrtpHLSFLQK-EKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLD 170
Cdd:PRK13538 91 ALE--------NLRFYQRlHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAID 161
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
33-237 |
3.60e-12 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 65.58 E-value: 3.60e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 33 ILGPNGSGKTSLLKLLYRQEKADKGliSLDGKP-----LEHWS-------LKETAKQMAVVTQFNQLqfdctVEEI--VL 98
Cdd:COG1245 104 ILGPNGIGKSTALKILSGELKPNLG--DYDEEPswdevLKRFRgtelqdyFKKLANGEIKVAHKPQY-----VDLIpkVF 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 99 LGRTPHLsfLQKEKERDYAlvhDALV-KVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIKYQLDL 177
Cdd:COG1245 177 KGTVREL--LEKVDERGKL---DELAeKLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPSSYLDIYQRLNV 251
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 896617071 178 LAIVKNL---KINVLAVLHDIQLACRYSDYLYlmkegeILYqGTPketitpeslqTVYGVQSQ 237
Cdd:COG1245 252 ARLIRELaeeGKYVLVVEHDLAILDYLADYVH------ILY-GEP----------GVYGVVSK 297
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
13-170 |
4.52e-12 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 65.12 E-value: 4.52e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQFNQLQFDcT 92
Cdd:PRK10790 352 DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-T 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 93 VEEIVLLGRTphlsfLQKEKerdyalVHDALVKVDMLEK--------KTRL---YSSLSGGEKQRVLLARALAQEPTLLL 161
Cdd:PRK10790 431 FLANVTLGRD-----ISEEQ------VWQALETVQLAELarslpdglYTPLgeqGNNLSVGQKQLLALARVLVQTPQILI 499
|
....*....
gi 896617071 162 LDEPTNHLD 170
Cdd:PRK10790 500 LDEATANID 508
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
16-221 |
5.96e-12 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 64.34 E-value: 5.96e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 16 KILKGVSLRV-EGHQFhTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLehwsLKETAKQMAVVTQFNQLQFD---- 90
Cdd:PRK15079 35 KAVDGVTLRLyEGETL-GVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL----LGMKDDEWRAVRSDIQMIFQdpla 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 91 -----CTVEEIV---LLGRTPHLSfLQKEKERdyalVHDALVKVDMLEKKTRLYS-SLSGGEKQRVLLARALAQEPTLLL 161
Cdd:PRK15079 110 slnprMTIGEIIaepLRTYHPKLS-RQEVKDR----VKAMMLKVGLLPNLINRYPhEFSGGQCQRIGIARALILEPKLII 184
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 896617071 162 LDEPTNHLDIKYQLDLLAIVKNLK----INVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:PRK15079 185 CDEPVSALDVSIQAQVVNLLQQLQremgLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDE 248
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
20-179 |
1.60e-11 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 63.21 E-value: 1.60e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 20 GVSLRV-EGHQFhTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWS---LKETAKQMAVVTQ-----FNQLQfd 90
Cdd:COG4608 36 GVSFDIrRGETL-GLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDITGLSgreLRPLRRRMQMVFQdpyasLNPRM-- 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 91 cTVEEIvlLGRTPHLSFLQKEKERDyALVHDALVKVDML-EKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHL 169
Cdd:COG4608 113 -TVGDI--IAEPLRIHGLASKAERR-ERVAELLELVGLRpEHADRYPHEFSGGQRQRIGIARALALNPKLIVCDEPVSAL 188
|
170
....*....|...
gi 896617071 170 DIKYQ---LDLLA 179
Cdd:COG4608 189 DVSIQaqvLNLLE 201
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
17-169 |
1.73e-11 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 63.53 E-value: 1.73e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 17 ILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSlKETAKQMAV--VTQFNQLQFDCTVE 94
Cdd:PRK15439 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLT-PAKAHQLGIylVPQEPLLFPNLSVK 104
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 896617071 95 EIVLLGRTPHlsflQKEKERDYALVHDALVKVDMLEKKtrlySSLSGGEKQRVLLARALAQEPTLLLLDEPTNHL 169
Cdd:PRK15439 105 ENILFGLPKR----QASMQKMKQLLAALGCQLDLDSSA----GSLEVADRQIVEILRGLMRDSRILILDEPTASL 171
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
13-217 |
1.78e-11 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 61.78 E-value: 1.78e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPleHWSLKETAKqmavvtqfnqLQFDCT 92
Cdd:cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRV--SSLLGLGGG----------FNPELT 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 93 VEE-IVLLGRTphLSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSlsgGEKQRVLLARALAQEPTLLLLDEPTNHLDI 171
Cdd:cd03220 101 GREnIYLNGRL--LGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSS---GMKARLAFAIATALEPDILLIDEVLAVGDA 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 896617071 172 KYQLD----LLAIVKNLKInVLAVLHDIQLACRYSDYLYLMKEGEILYQG 217
Cdd:cd03220 176 AFQEKcqrrLRELLKQGKT-VILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
18-211 |
1.91e-11 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 61.58 E-value: 1.91e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 18 LKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLI----SLDGKPLEHWSLKETAKQMAVVTQFNQLqFDCTV 93
Cdd:cd03290 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVhwsnKNESEPSFEATRSRNRYSVAYAAQKPWL-LNATV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 94 EEIVLLGrTPHlsflqkEKERdYALVHDALV---KVDMLE--KKTRLYS---SLSGGEKQRVLLARALAQEPTLLLLDEP 165
Cdd:cd03290 96 EENITFG-SPF------NKQR-YKAVTDACSlqpDIDLLPfgDQTEIGErgiNLSGGQRQRICVARALYQNTNIVFLDDP 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 896617071 166 TNHLDIK-----YQLDLLAIVKNLKINVLAVLHDIQLaCRYSDYLYLMKEG 211
Cdd:cd03290 168 FSALDIHlsdhlMQEGILKFLQDDKRTLVLVTHKLQY-LPHADWIIAMKDG 217
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
18-204 |
2.30e-11 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 62.11 E-value: 2.30e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 18 LKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQE------KADkGLISLDGKPL--EHWSLKETAKQMAVVTQ----FN 85
Cdd:PRK14243 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNdlipgfRVE-GKVTFHGKNLyaPDVDPVEVRRRIGMVFQkpnpFP 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 86 QLQFDCTVEEIVLLGRTPHLSFLQKEKERDYAL---VHDALvkvdmleKKTRLysSLSGGEKQRVLLARALAQEPTLLLL 162
Cdd:PRK14243 105 KSIYDNIAYGARINGYKGDMDELVERSLRQAALwdeVKDKL-------KQSGL--SLSGGQQQRLCIARAIAVQPEVILM 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 896617071 163 DEPTNHLDIKYQLDLLAIVKNLK--INVLAVLHDIQLACRYSDY 204
Cdd:PRK14243 176 DEPCSALDPISTLRIEELMHELKeqYTIIIVTHNMQQAARVSDM 219
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
3-183 |
3.26e-11 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 61.35 E-value: 3.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 3 LICQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQE--KADKGLISLDGKPLEHWSLKETAKQMAV 80
Cdd:PRK09580 2 LSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREdyEVTGGTVEFKGKDLLELSPEDRAGEGIF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 81 vtqfnqLQFDCTVEeivllgrTPHLS---FLQK-----EKERDYALVhDALVKVDMLEKKTRLYS------------SLS 140
Cdd:PRK09580 82 ------MAFQYPVE-------IPGVSnqfFLQTalnavRSYRGQEPL-DRFDFQDLMEEKIALLKmpedlltrsvnvGFS 147
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 896617071 141 GGEKQRVLLARALAQEPTLLLLDEPTNHLDIkyqlDLLAIVKN 183
Cdd:PRK09580 148 GGEKKRNDILQMAVLEPELCILDESDSGLDI----DALKIVAD 186
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
38-213 |
3.88e-11 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 62.24 E-value: 3.88e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 38 GSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLK-----------ETAKQMAVVTQfnqlqfdCTVEE-IVLLGRTPHL 105
Cdd:PRK11288 289 GAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRdairagimlcpEDRKAEGIIPV-------HSVADnINISARRHHL 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 106 SF---LQKEKERDYALVHDALVKVdmlekKTR----LYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIKYQLDLL 178
Cdd:PRK11288 362 RAgclINNRWEAENADRFIRSLNI-----KTPsreqLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIY 436
|
170 180 190
....*....|....*....|....*....|....*...
gi 896617071 179 AIVKNL---KINVLAVLHDIQLACRYSDYLYLMKEGEI 213
Cdd:PRK11288 437 NVIYELaaqGVAVLFVSSDLPEVLGVADRIVVMREGRI 474
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
139-211 |
6.07e-11 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 59.47 E-value: 6.07e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 896617071 139 LSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIKYQLDLLAIVKNLKINVLAVLHDIQLACRYSDYLYLMKEG 211
Cdd:cd03223 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLWKFHDRVLDLDGEG 164
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
119-171 |
7.38e-11 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 61.50 E-value: 7.38e-11
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 896617071 119 VHDALVKVDmLEKKTRLySSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDI 171
Cdd:PRK11147 139 INEVLAQLG-LDPDAAL-SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDI 189
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
38-213 |
1.84e-10 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 60.45 E-value: 1.84e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 38 GSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVV----TQFNQLQFDCTVEEIVLLGRTPHLSFLQKEKe 113
Cdd:PRK15439 299 GAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYlpedRQSSGLYLDAPLAWNVCALTHNRRGFWIKPA- 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 114 RDYALV---HDAL-VKVDMLEKKTRlysSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIKYQLDLLAIVKNLKINVL 189
Cdd:PRK15439 378 RENAVLeryRRALnIKFNHAEQAAR---TLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNV 454
|
170 180
....*....|....*....|....*..
gi 896617071 190 AVL---HDIQLACRYSDYLYLMKEGEI 213
Cdd:PRK15439 455 AVLfisSDLEEIEQMADRVLVMHQGEI 481
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
17-221 |
2.38e-10 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 59.86 E-value: 2.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 17 ILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKEtaKQMAVVTQFNQLQFDCTVEEI 96
Cdd:PRK11650 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPAD--RDIAMVFQNYALYPHMSVREN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 97 VLLG----RTPhlsflQKEKERDYALVHDALVKVDMLEKKTRlysSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIK 172
Cdd:PRK11650 97 MAYGlkirGMP-----KAEIEERVAEAARILELEPLLDRKPR---ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAK 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 896617071 173 YQ----LDLLAIVKNLKINVLAVLHDiQL-ACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:PRK11650 169 LRvqmrLEIQRLHRRLKTTSLYVTHD-QVeAMTLADRVVVMNGGVAEQIGTPVE 221
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
3-171 |
3.17e-10 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 58.32 E-value: 3.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 3 LICQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLehwSLKETAKQMAVVT 82
Cdd:PRK13543 12 LAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTA---TRGDRSRFMAYLG 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 83 QFNQLQFDCTVEEivllgrtpHLSFLQK-EKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLL 161
Cdd:PRK13543 89 HLPGLKADLSTLE--------NLHFLCGlHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWL 160
|
170
....*....|
gi 896617071 162 LDEPTNHLDI 171
Cdd:PRK13543 161 LDEPYANLDL 170
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
13-171 |
3.35e-10 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 59.52 E-value: 3.35e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRV-EGHQFHTIlGPNGSGKTSLLKLLYRQEKADKGLISLDgkPLEhwslketakQMAVVTQfNQLQF-D 90
Cdd:PRK15064 12 GAKPLFENISVKFgGGNRYGLI-GANGCGKSTFMKILGGDLEPSAGNVSLD--PNE---------RLGKLRQ-DQFAFeE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 91 CTVEEIVLLGRTPhLSFLQKEKERDYAL---VHDALVKVDMLEKK----------TR-----------------LYSSLS 140
Cdd:PRK15064 79 FTVLDTVIMGHTE-LWEVKQERDRIYALpemSEEDGMKVADLEVKfaemdgytaeARagelllgvgipeeqhygLMSEVA 157
|
170 180 190
....*....|....*....|....*....|.
gi 896617071 141 GGEKQRVLLARALAQEPTLLLLDEPTNHLDI 171
Cdd:PRK15064 158 PGWKLRVLLAQALFSNPDILLLDEPTNNLDI 188
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
9-221 |
4.05e-10 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 58.71 E-value: 4.05e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 9 HFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGK----PLEHWSLKETAKQMAVV-TQ 83
Cdd:cd03291 44 NLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRisfsSQFSWIMPGTIKENIIFgVS 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 84 FNQLQFD-----CTVEEIVLlgrtphlsflqKEKERDYALVHDALVkvdmlekktrlysSLSGGEKQRVLLARALAQEPT 158
Cdd:cd03291 124 YDEYRYKsvvkaCQLEEDIT-----------KFPEKDNTVLGEGGI-------------TLSGGQRARISLARAVYKDAD 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 896617071 159 LLLLDEPTNHLDIKYQLDLL-AIVKNLKINVLAVLHDIQLA-CRYSDYLYLMKEGEILYQGTPKE 221
Cdd:cd03291 180 LYLLDSPFGYLDVFTEKEIFeSCVCKLMANKTRILVTSKMEhLKKADKILILHEGSSYFYGTFSE 244
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
33-221 |
5.36e-10 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 59.10 E-value: 5.36e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 33 ILGPNGSGKTSLLKLlyrqekadkglISLDGKPLEHWSLKETAKQMAVVTQFNQLQFDCTVEEIVLLGRTPHLSFLQKEK 112
Cdd:PLN03073 540 MVGPNGIGKSTILKL-----------ISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLR 608
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 113 ERDYAL-VHDALVKVDMLekktrlysSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDikyqLDLL-AIVKNLKI---N 187
Cdd:PLN03073 609 AHLGSFgVTGNLALQPMY--------TLSGGQKSRVAFAKITFKKPHILLLDEPSNHLD----LDAVeALIQGLVLfqgG 676
|
170 180 190
....*....|....*....|....*....|....*
gi 896617071 188 VLAVLHDIQLACRYSDYLYLMKEGEIL-YQGTPKE 221
Cdd:PLN03073 677 VLMVSHDEHLISGSVDELWVVSEGKVTpFHGTFHD 711
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
16-223 |
5.52e-10 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 59.05 E-value: 5.52e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 16 KILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLdgKPLEHW--------SLKETAKQ-MAVVTQfnq 86
Cdd:TIGR03269 298 KAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNV--RVGDEWvdmtkpgpDGRGRAKRyIGILHQ--- 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 87 lQFDCTVEEIVLLGRTPHLSF-LQKEKERDYALVhdALVKVDMLEKKT-----RLYSSLSGGEKQRVLLARALAQEPTLL 160
Cdd:TIGR03269 373 -EYDLYPHRTVLDNLTEAIGLeLPDELARMKAVI--TLKMVGFDEEKAeeildKYPDELSEGERHRVALAQVLIKEPRIV 449
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 896617071 161 LLDEPTNHLD----IKYQLDLLAIVKNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETI 223
Cdd:TIGR03269 450 ILDEPTGTMDpitkVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIV 516
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
133-221 |
6.37e-10 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 58.71 E-value: 6.37e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 133 TRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIKYQLDLLAIVKNLK----INVLAVLHDIQLACRYSDYLYLM 208
Cdd:PRK10261 163 SRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQkemsMGVIFITHDMGVVAEIADRVLVM 242
|
90
....*....|...
gi 896617071 209 KEGEILYQGTPKE 221
Cdd:PRK10261 243 YQGEAVETGSVEQ 255
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
13-170 |
8.00e-10 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 58.49 E-value: 8.00e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLL---YRQEKADKglISLDGKPLEH----WSLKetaKQMAVVTqfN 85
Cdd:PRK10938 271 NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLItgdHPQGYSND--LTLFGRRRGSgetiWDIK---KHIGYVS--S 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 86 QLQFD----CTVEEIVLLGRTPHLSFLQKEKERDYALVHDALvkvDMLEKKTRL----YSSLSGGEKQRVLLARALAQEP 157
Cdd:PRK10938 344 SLHLDyrvsTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWL---DILGIDKRTadapFHSLSWGQQRLALIVRALVKHP 420
|
170
....*....|...
gi 896617071 158 TLLLLDEPTNHLD 170
Cdd:PRK10938 421 TLLILDEPLQGLD 433
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
4-217 |
8.15e-10 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 56.48 E-value: 8.15e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 4 ICQDIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKAD--KGLISLDGKPLEhwslKETAKQMAVV 81
Cdd:cd03232 9 LNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGviTGEILINGRPLD----KNFQRSTGYV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 82 TQFNQLQFDCTVEEivllgrtphlsflqkekerdyALVHDALVKvdmlekktrlysSLSGGEKQRVLLARALAQEPTLLL 161
Cdd:cd03232 85 EQQDVHSPNLTVRE---------------------ALRFSALLR------------GLSVEQRKRLTIGVELAAKPSILF 131
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 896617071 162 LDEPTNHLDIKYQLDLLAIVKNLKINVLAVLHDI----QLACRYSDYLYLMKE-GEILYQG 217
Cdd:cd03232 132 LDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIhqpsASIFEKFDRLLLLKRgGKTVYFG 192
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
18-223 |
1.11e-09 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 57.11 E-value: 1.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 18 LKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVV-----TQFNQLQFDCT 92
Cdd:PRK15112 29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIfqdpsTSLNPRQRISQ 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 93 VEEIVLLGRTpHLSFLQKEKErdyalVHDALVKVDMLEKKTRLYSS-LSGGEKQRVLLARALAQEPTLLLLDEPTNHLDI 171
Cdd:PRK15112 109 ILDFPLRLNT-DLEPEQREKQ-----IIETLRQVGLLPDHASYYPHmLAPGQKQRLGLARALILRPKVIIADEALASLDM 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 896617071 172 KYQLDLLAIVKNLK----INVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETI 223
Cdd:PRK15112 183 SMRSQLINLMLELQekqgISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVL 238
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
127-171 |
1.78e-09 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 57.56 E-value: 1.78e-09
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 896617071 127 DMLEKKTRLYSslsGGEKQRVLLARALAQEPTLLLLDEPTNHLDI 171
Cdd:PLN03073 336 EMQVKATKTFS---GGWRMRIALARALFIEPDLLLLDEPTNHLDL 377
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
9-221 |
1.96e-09 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 57.61 E-value: 1.96e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 9 HFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGK----PLEHWSLKETAKQMAVV-TQ 83
Cdd:TIGR01271 433 NFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRisfsPQTSWIMPGTIKDNIIFgLS 512
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 84 FNQLQFD-----CTVEEIvllgrtphlsfLQKEKERDYALVHDALVkvdmlekktrlysSLSGGEKQRVLLARALAQEPT 158
Cdd:TIGR01271 513 YDEYRYTsvikaCQLEED-----------IALFPEKDKTVLGEGGI-------------TLSGGQRARISLARAVYKDAD 568
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 896617071 159 LLLLDEPTNHLDIKYQLDLLA------IVKNLKINVLAVLHDIQLAcrysDYLYLMKEGEILYQGTPKE 221
Cdd:TIGR01271 569 LYLLDSPFTHLDVVTEKEIFEsclcklMSNKTRILVTSKLEHLKKA----DKILLLHEGVCYFYGTFSE 633
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
14-218 |
2.38e-09 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 56.63 E-value: 2.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 14 EKKILKGVSLRVEGHQFHTILGPNGSGKTSLLK----LLYrqekADKGLISLDGK-PLEHwsLKETAKQMAVVT-QFNQL 87
Cdd:COG4586 34 EVEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKmltgILV----PTSGEVRVLGYvPFKR--RKEFARRIGVVFgQRSQL 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 88 QFDCTVEEivllgrtphlSF-LQKE----KERDYALVHDALVKV----DMLEKKTRlysSLSGGEKQRVLLARALAQEPT 158
Cdd:COG4586 108 WWDLPAID----------SFrLLKAiyriPDAEYKKRLDELVELldlgELLDTPVR---QLSLGQRMRCELAAALLHRPK 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 896617071 159 LLLLDEPTNHLDIKYQLD----LLAIVKNLKINVLAVLHDI----QLACRysdyLYLMKEGEILYQGT 218
Cdd:COG4586 175 ILFLDEPTIGLDVVSKEAirefLKEYNRERGTTILLTSHDMddieALCDR----VIVIDHGRIIYDGS 238
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
16-223 |
2.38e-09 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 56.51 E-value: 2.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 16 KILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSlKETAK------QMAVVTQFNQLQF 89
Cdd:PRK11308 29 KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD-PEAQKllrqkiQIVFQNPYGSLNP 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 90 DCTVEEIV---LLGRTPhlsfLQKEKERDYALvhdalvkvDMLEK---KTRLYSS----LSGGEKQRVLLARALAQEPTL 159
Cdd:PRK11308 108 RKKVGQILeepLLINTS----LSAAERREKAL--------AMMAKvglRPEHYDRyphmFSGGQRQRIAIARALMLDPDV 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 896617071 160 LLLDEPTNHLDIKYQ---LDLLA-IVKNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQGtPKETI 223
Cdd:PRK11308 176 VVADEPVSALDVSVQaqvLNLMMdLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKG-TKEQI 242
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
16-169 |
2.54e-09 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 56.94 E-value: 2.54e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 16 KILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQ-MAVVTQFNQLQFDCTVE 94
Cdd:PRK10762 18 KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAgIGIIHQELNLIPQLTIA 97
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 896617071 95 EIVLLGRTPHLSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHL 169
Cdd:PRK10762 98 ENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDAL 172
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
7-217 |
2.58e-09 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 57.48 E-value: 2.58e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 7 DIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLI----SLDGKPLEHWSLKETAKQmavvt 82
Cdd:PTZ00243 665 DDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVwaerSIAYVPQQAWIMNATVRG----- 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 83 qfNQLQFDctveeivllgrtphlsflqkekERDYALVHDAlVKVDMLEKKTRLYSS------------LSGGEKQRVLLA 150
Cdd:PTZ00243 740 --NILFFD----------------------EEDAARLADA-VRVSQLEADLAQLGGgleteigekgvnLSGGQKARVSLA 794
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 896617071 151 RALAQEPTLLLLDEPTNHLD------IKYQLDLLAIVKnlKINVLAVlHDIQLACRySDYLYLMKEGEILYQG 217
Cdd:PTZ00243 795 RAVYANRDVYLLDDPLSALDahvgerVVEECFLGALAG--KTRVLAT-HQVHVVPR-ADYVVALGDGRVEFSG 863
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
136-212 |
2.75e-09 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 54.89 E-value: 2.75e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 136 YSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIKYQLDLLAIVKNL----KINVLAVLHDIQLACRYSDYLYLMkEG 211
Cdd:cd03222 69 YIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLseegKKTALVVEHDLAVLDYLSDRIHVF-EG 147
|
.
gi 896617071 212 E 212
Cdd:cd03222 148 E 148
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
14-228 |
2.90e-09 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 56.72 E-value: 2.90e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 14 EKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWS-LKETAKQMAVVTQ--------- 83
Cdd:PRK09700 275 DRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSpLDAVKKGMAYITEsrrdngffp 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 84 -FNQLQFDCTVEEIVLLGRTPHLSFLQKEKERDYALVHDAL--VKVDMLEKKTrlySSLSGGEKQRVLLARALAQEPTLL 160
Cdd:PRK09700 355 nFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELlaLKCHSVNQNI---TELSGGNQQKVLISKWLCCCPEVI 431
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 896617071 161 LLDEPTNHLDIKYQLDLLAIVKNLK---INVLAV---LHDIQLACrysDYLYLMKEGEILYQGTPKETITPESL 228
Cdd:PRK09700 432 IFDEPTRGIDVGAKAEIYKVMRQLAddgKVILMVsseLPEIITVC---DRIAVFCEGRLTQILTNRDDMSEEEI 502
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
139-228 |
4.82e-09 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 55.96 E-value: 4.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 139 LSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIKYQLDLLAIVKNLKIN----VLAVLHDIQLACRYSDYLylmkegEIL 214
Cdd:PRK15093 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNnnttILLISHDLQMLSQWADKI------NVL 232
|
90
....*....|....
gi 896617071 215 YQGTPKETITPESL 228
Cdd:PRK15093 233 YCGQTVETAPSKEL 246
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
13-221 |
5.08e-09 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 55.81 E-value: 5.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHwslKETAKQ-MAVVTQFNQLQfdc 91
Cdd:PRK11000 14 GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMND---VPPAERgVGMVFQSYALY--- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 92 tveeivllgrtPHLSFLQ-----------KEKERDYALVHDA--LVKVDMLEKKTRlysSLSGGEKQRVLLARALAQEPT 158
Cdd:PRK11000 88 -----------PHLSVAEnmsfglklagaKKEEINQRVNQVAevLQLAHLLDRKPK---ALSGGQRQRVAIGRTLVAEPS 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 896617071 159 LLLLDEPTNHLD----IKYQLDLLAIVKNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:PRK11000 154 VFLLDEPLSNLDaalrVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLE 220
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
11-217 |
5.71e-09 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 54.58 E-value: 5.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 11 GLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKAD---KGLISLDGKPLehwslKETAKQMAVVTQFNQl 87
Cdd:cd03233 16 GRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNvsvEGDIHYNGIPY-----KEFAEKYPGEIIYVS- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 88 QFD-----CTVEEIvllgrtphLSFLQKEKERDYalvhdalVKVdmlekktrlyssLSGGEKQRVLLARALAQEPTLLLL 162
Cdd:cd03233 90 EEDvhfptLTVRET--------LDFALRCKGNEF-------VRG------------ISGGERKRVSIAEALVSRASVLCW 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 896617071 163 DEPTNHLDIKYQLDLLAIVKN----LKINVLAVLH----DIqlacrYS--DYLYLMKEGEILYQG 217
Cdd:cd03233 143 DNSTRGLDSSTALEILKCIRTmadvLKTTTFVSLYqasdEI-----YDlfDKVLVLYEGRQIYYG 202
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
119-183 |
6.92e-09 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 55.58 E-value: 6.92e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 896617071 119 VHDALVKV------DMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIKYQLDLLAIVKN 183
Cdd:COG4178 460 LREALEAVglghlaERLDEEADWDQVLSLGEQQRLAFARLLLHKPDWLFLDEATSALDEENEAALYQLLRE 530
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
13-185 |
7.25e-09 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 56.07 E-value: 7.25e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADkGLISLDGKPLEHWSLKETAKQMAVVTQfnqlqfdct 92
Cdd:TIGR01271 1230 AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE-GEIQIDGVSWNSVTLQTWRKAFGVIPQ--------- 1299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 93 veEIVLLGRT------PHLSFLQKEKER------------------DYALVHDALVkvdmlekktrlyssLSGGEKQRVL 148
Cdd:TIGR01271 1300 --KVFIFSGTfrknldPYEQWSDEEIWKvaeevglksvieqfpdklDFVLVDGGYV--------------LSNGHKQLMC 1363
|
170 180 190
....*....|....*....|....*....|....*...
gi 896617071 149 LARALAQEPTLLLLDEPTNHLD-IKYQLdllaIVKNLK 185
Cdd:TIGR01271 1364 LARSILSKAKILLLDEPSAHLDpVTLQI----IRKTLK 1397
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
33-221 |
8.03e-09 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 55.12 E-value: 8.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 33 ILGPNGSGKT----SLLKLLyrqekADKGLIS----LDGKplEHWSLKETakqmavvtQFNQLQfdctVEEIVLLGRTPH 104
Cdd:PRK09473 47 IVGESGSGKSqtafALMGLL-----AANGRIGgsatFNGR--EILNLPEK--------ELNKLR----AEQISMIFQDPM 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 105 LSF-------------LQKEKERDYALVHDALVK----VDMLE--KKTRLYS-SLSGGEKQRVLLARALAQEPTLLLLDE 164
Cdd:PRK09473 108 TSLnpymrvgeqlmevLMLHKGMSKAEAFEESVRmldaVKMPEarKRMKMYPhEFSGGMRQRVMIAMALLCRPKLLIADE 187
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 896617071 165 PTNHLDIKYQLDLLAIVKNLK----INVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:PRK09473 188 PTTALDVTVQAQIMTLLNELKrefnTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARD 248
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
8-221 |
8.21e-09 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 55.13 E-value: 8.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 8 IHFGlGEKKILKGV---SLRVEGHQFHTILGPNGSGKT----SLLKLLYRQEKADKGLISLDGKPLEHWSLKETAK---- 76
Cdd:PRK11022 11 VHFG-DESAPFRAVdriSYSVKQGEVVGIVGESGSGKSvsslAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNlvga 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 77 QMAVVTQ--FNQLQFDCTVEEIVLLGRTPHLSFLQKEKeRDYALvhDALVKVDMLEKKTRL--YS-SLSGGEKQRVLLAR 151
Cdd:PRK11022 90 EVAMIFQdpMTSLNPCYTVGFQIMEAIKVHQGGNKKTR-RQRAI--DLLNQVGIPDPASRLdvYPhQLSGGMSQRVMIAM 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 896617071 152 ALAQEPTLLLLDEPTNHLDIKYQLD----LLAIVKNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKE 221
Cdd:PRK11022 167 AIACRPKLLIADEPTTALDVTIQAQiielLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHD 240
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
17-223 |
1.64e-08 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 54.95 E-value: 1.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 17 ILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQfNQLQFDCTVEei 96
Cdd:TIGR00957 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQ-DPVLFSGSLR-- 1377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 97 vlLGRTPHLSFLQKEKERDYALVHdalVK--VDMLEKKTRLYSS-----LSGGEKQRVLLARALAQEPTLLLLDEPTNHL 169
Cdd:TIGR00957 1378 --MNLDPFSQYSDEEVWWALELAH---LKtfVSALPDKLDHECAeggenLSVGQRQLVCLARALLRKTKILVLDEATAAV 1452
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 896617071 170 DIKYQLDLLAIVKNL--KINVLAVLHDIQLACRYSDYLYLMKeGEILYQGTPKETI 223
Cdd:TIGR00957 1453 DLETDNLIQSTIRTQfeDCTVLTIAHRLNTIMDYTRVIVLDK-GEVAEFGAPSNLL 1507
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
6-213 |
2.22e-08 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 54.21 E-value: 2.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 6 QDIHFGLGEKKI-LKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQM-AVVTQ 83
Cdd:PRK10522 326 RNVTFAYQDNGFsVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFsAVFTD 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 84 FNQlqFDctveeiVLLGrtphlsflQKEKERDYALVHDALVKVDMLEKKT----RLYS-SLSGGEKQRVLLARALAQEPT 158
Cdd:PRK10522 406 FHL--FD------QLLG--------PEGKPANPALVEKWLERLKMAHKLEledgRISNlKLSKGQKKRLALLLALAEERD 469
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 896617071 159 LLLLDEPTNHLD-----IKYQlDLLAIVKNLKINVLAVLHD---IQLAcrysDYLYLMKEGEI 213
Cdd:PRK10522 470 ILLLDEWAADQDphfrrEFYQ-VLLPLLQEMGKTIFAISHDdhyFIHA----DRLLEMRNGQL 527
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
137-212 |
3.32e-08 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 53.88 E-value: 3.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 137 SSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIKYQLDLLAIVKNLKIN----VLAVLHDIQlACRYSDYLYLMKEGE 212
Cdd:PTZ00265 578 SKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNenriTIIIAHRLS-TIRYANTIFVLSNRE 656
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
6-236 |
4.04e-08 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 53.83 E-value: 4.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 6 QDIH--FGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQ 83
Cdd:PLN03232 1238 EDVHlrYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQ 1317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 84 fNQLQFDCTVEEIVLLGRTPHLSFLQKEKERdyALVHDAL------VKVDMLEKKtrlySSLSGGEKQRVLLARALAQEP 157
Cdd:PLN03232 1318 -SPVLFSGTVRFNIDPFSEHNDADLWEALER--AHIKDVIdrnpfgLDAEVSEGG----ENFSVGQRQLLSLARALLRRS 1390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 158 TLLLLDEPTNHLDIKyqLDLLaIVKNLK-----INVLAVLHDIQ--LACrysDYLYLMKEGEILYQGTPKETITPESLQT 230
Cdd:PLN03232 1391 KILVLDEATASVDVR--TDSL-IQRTIReefksCTMLVIAHRLNtiIDC---DKILVLSSGQVLEYDSPQELLSRDTSAF 1464
|
....*.
gi 896617071 231 VYGVQS 236
Cdd:PLN03232 1465 FRMVHS 1470
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
17-185 |
5.38e-08 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 52.55 E-value: 5.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 17 ILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADkGLISLDGKPLEHWSLKETAKQMAVVTQ----------FNQ 86
Cdd:cd03289 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GDIQIDGVSWNSVPLQKWRKAFGVIPQkvfifsgtfrKNL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 87 LQFDC-TVEEIVLLGRTPHLSFL--QKEKERDYALVHDALVkvdmlekktrlyssLSGGEKQRVLLARALAQEPTLLLLD 163
Cdd:cd03289 98 DPYGKwSDEEIWKVAEEVGLKSVieQFPGQLDFVLVDGGCV--------------LSHGHKQLMCLARSVLSKAKILLLD 163
|
170 180
....*....|....*....|...
gi 896617071 164 EPTNHLD-IKYQLdllaIVKNLK 185
Cdd:cd03289 164 EPSAHLDpITYQV----IRKTLK 182
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
7-175 |
5.94e-08 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 52.70 E-value: 5.94e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 7 DIHFGLGEKKILkGVSlrveghqfhtilGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKE-TAKQMAVVTQFN 85
Cdd:PRK10762 270 DVSFTLRKGEIL-GVS------------GLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDgLANGIVYISEDR 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 86 Q---LQFDCTVEEIVLLGRTPHLSF----LQKEKERdyALVHDAL----VKVDMLEKKTRLyssLSGGEKQRVLLARALA 154
Cdd:PRK10762 337 KrdgLVLGMSVKENMSLTALRYFSRaggsLKHADEQ--QAVSDFIrlfnIKTPSMEQAIGL---LSGGNQQKVAIARGLM 411
|
170 180
....*....|....*....|....*.
gi 896617071 155 QEPTLLLLDEPTNHLDIK-----YQL 175
Cdd:PRK10762 412 TRPKVLILDEPTRGVDVGakkeiYQL 437
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
55-170 |
6.19e-08 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 53.11 E-value: 6.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 55 DKGLISLDGKPLEHWSLKETAKQMAVVTQfNQLQFDCTVEEIVLLGRtphlsflQKEKERDYALVHDALVKVDMLEKKTR 134
Cdd:PTZ00265 1275 NSGKILLDGVDICDYNLKDLRNLFSIVSQ-EPMLFNMSIYENIKFGK-------EDATREDVKRACKFAAIDEFIESLPN 1346
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 896617071 135 LY--------SSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLD 170
Cdd:PTZ00265 1347 KYdtnvgpygKSLSGGQKQRIAIARALLREPKILLLDEATSSLD 1390
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
16-178 |
7.68e-08 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 52.48 E-value: 7.68e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 16 KILKGVSLRVEGHQFHTILGPNGSGKTSLLKLL--------YRqekadkGLISLDGKPLEHWSLKETAKQMAVVTQfnql 87
Cdd:NF040905 15 KALDDVNLSVREGEIHALCGENGAGKSTLMKVLsgvyphgsYE------GEILFDGEVCRFKDIRDSEALGIVIIH---- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 88 qfdctvEEIVLLgrtPHLS-----FLQKEKER----DYALVH----DALVKVDMLEKKTRLYSSLSGGEKQRVLLARALA 154
Cdd:NF040905 85 ------QELALI---PYLSiaeniFLGNERAKrgviDWNETNrrarELLAKVGLDESPDTLVTDIGVGKQQLVEIAKALS 155
|
170 180
....*....|....*....|....*..
gi 896617071 155 QEPTLLLLDEPT---NHLDIKYQLDLL 178
Cdd:NF040905 156 KDVKLLILDEPTaalNEEDSAALLDLL 182
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
17-221 |
7.76e-08 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 52.86 E-value: 7.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 17 ILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQfNQLQFDCTVEEI 96
Cdd:PTZ00243 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQ-DPVLFDGTVRQN 1403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 97 VllgrTPhlsFLQKEKERDYAlvhdALVKVDMLEK--------KTRLY---SSLSGGEKQRVLLARALAQEPT-LLLLDE 164
Cdd:PTZ00243 1404 V----DP---FLEASSAEVWA----ALELVGLRERvasesegiDSRVLeggSNYSVGQRQLMCMARALLKKGSgFILMDE 1472
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 896617071 165 PTNHLDIKYQLDLLAIVKNLKIN--VLAVLHDIQLACRYsDYLYLMKEGEILYQGTPKE 221
Cdd:PTZ00243 1473 ATANIDPALDRQIQATVMSAFSAytVITIAHRLHTVAQY-DKIIVMDHGAVAEMGSPRE 1530
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
33-194 |
1.14e-07 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 52.09 E-value: 1.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 33 ILGPNGSGKTSLLKLLYRQEKADKGLISLDGkpleHWSLketakqmAVVTQfNQLQFDCTVEEIVLLGRTPHLSF---LQ 109
Cdd:PRK10636 32 LVGKNGCGKSTLLALLKNEISADGGSYTFPG----NWQL-------AWVNQ-ETPALPQPALEYVIDGDREYRQLeaqLH 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 110 KEKERD----YALVHDALVKVDML-----------------EKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNH 168
Cdd:PRK10636 100 DANERNdghaIATIHGKLDAIDAWtirsraasllhglgfsnEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNH 179
|
170 180
....*....|....*....|....*.
gi 896617071 169 LDIKYQLDLLAIVKNLKINVLAVLHD 194
Cdd:PRK10636 180 LDLDAVIWLEKWLKSYQGTLILISHD 205
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
10-184 |
1.79e-07 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 51.55 E-value: 1.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 10 FGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQekadkgLISLDGKPLEHWslketakQMAVVTQFNQLQF 89
Cdd:PRK10938 11 FRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGE------LPLLSGERQSQF-------SHITRLSFEQLQK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 90 dcTVEEIVLLGRTPHLSflqkEKERDYAL---------VHDAlVKVDMLEKK-------TRLYSSLSGGEKQRVLLARAL 153
Cdd:PRK10938 78 --LVSDEWQRNNTDMLS----PGEDDTGRttaeiiqdeVKDP-ARCEQLAQQfgitallDRRFKYLSTGETRKTLLCQAL 150
|
170 180 190
....*....|....*....|....*....|.
gi 896617071 154 AQEPTLLLLDEPTNHLDIKYQLDLLAIVKNL 184
Cdd:PRK10938 151 MSEPDLLILDEPFDGLDVASRQQLAELLASL 181
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
13-170 |
1.95e-07 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 51.48 E-value: 1.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGkplehwslketakQMAVVTQFNQLQfDCT 92
Cdd:TIGR00957 649 DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAYVPQQAWIQ-NDS 714
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 93 VEEIVLLGRTPHLSFLQKEKERdYALVHDALV-----KVDMLEKKTrlysSLSGGEKQRVLLARALAQEPTLLLLDEPTN 167
Cdd:TIGR00957 715 LRENILFGKALNEKYYQQVLEA-CALLPDLEIlpsgdRTEIGEKGV----NLSGGQKQRVSLARAVYSNADIYLFDDPLS 789
|
...
gi 896617071 168 HLD 170
Cdd:TIGR00957 790 AVD 792
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
28-219 |
2.11e-07 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 51.55 E-value: 2.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 28 HQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHwSLKETAKQMAVVTQFNQLQFDCTVEEIVLL-----GRT 102
Cdd:TIGR01257 956 NQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLGMCPQHNILFHHLTVAEHILFyaqlkGRS 1034
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 103 PHLSFLQKEkerdyALVHDAlvkvDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDI---KYQLDLLA 179
Cdd:TIGR01257 1035 WEEAQLEME-----AMLEDT----GLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPysrRSIWDLLL 1105
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 896617071 180 IVKNLKINVLAVlHDIQLACRYSDYLYLMKEGEILYQGTP 219
Cdd:TIGR01257 1106 KYRSGRTIIMST-HHMDEADLLGDRIAIISQGRLYCSGTP 1144
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
13-224 |
2.36e-07 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 50.67 E-value: 2.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEK------ADKglISLDGKPLEHWSLKE----TAKQMAVVT 82
Cdd:COG4170 18 GRVKAVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGITKdnwhvtADR--FRWNGIDLLKLSPRErrkiIGREIAMIF 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 83 Q------------FNQLqfdctvEEiVLLGRTPHLSFLQK---EKERDYALVHdalvKVDMLEKKTRLYS---SLSGGEK 144
Cdd:COG4170 96 QepsscldpsakiGDQL------IE-AIPSWTFKGKWWQRfkwRKKRAIELLH----RVGIKDHKDIMNSyphELTEGEC 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 145 QRVLLARALAQEPTLLLLDEPTNHLDIKYQ---LDLLAIV-KNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPK 220
Cdd:COG4170 165 QKVMIAMAIANQPRLLIADEPTNAMESTTQaqiFRLLARLnQLQGTSILLISHDLESISQWADTITVLYCGQTVESGPTE 244
|
....
gi 896617071 221 ETIT 224
Cdd:COG4170 245 QILK 248
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
106-228 |
3.97e-07 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 50.60 E-value: 3.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 106 SFLQKEKERDYALVHDALVKVDMLEKktrlYSSLSGGEKQRVLLARAL---AQEPTLLLLDEPTNHLDI--KYQL-DLLA 179
Cdd:PRK00635 1671 PFLKKIQKPLQALIDNGLGYLPLGQN----LSSLSLSEKIAIKIAKFLylpPKHPTLFLLDEIATSLDNqqKSALlVQLR 1746
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 896617071 180 IVKNLKINVLAVLHDIQLAcRYSDYLYLM------KEGEILYQGTPKETITPESL 228
Cdd:PRK00635 1747 TLVSLGHSVIYIDHDPALL-KQADYLIEMgpgsgkTGGKILFSGPPKDISASKDS 1800
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
138-223 |
4.26e-07 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 50.40 E-value: 4.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 138 SLSGGEKQRVLLARALAQE---PTLLLLDEPTNHL---DIKYQLDLLAIVKNLKINVLAVLHDIQLAcRYSDYLYLM--- 208
Cdd:TIGR00630 829 TLSGGEAQRIKLAKELSKRstgRTLYILDEPTTGLhfdDIKKLLEVLQRLVDKGNTVVVIEHNLDVI-KTADYIIDLgpe 907
|
90
....*....|....*...
gi 896617071 209 ---KEGEILYQGTPKETI 223
Cdd:TIGR00630 908 ggdGGGTVVASGTPEEVA 925
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
33-197 |
4.93e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 48.14 E-value: 4.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 33 ILGPNGSGKTSLLKLLYRQ-EKADKGLISLDGkplehwslketakqmavvtqfnqlqfdctveeivllgrtphlsflqke 111
Cdd:smart00382 7 IVGPPGSGKTTLARALARElGPPGGGVIYIDG------------------------------------------------ 38
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 112 kERDYALVHDALVKVDMLEKKTrlysSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIKYQLDLLAIVKNLKINVLAV 191
Cdd:smart00382 39 -EDILEEVLDQLLLIIVGGKKA----SGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKS 113
|
....*.
gi 896617071 192 LHDIQL 197
Cdd:smart00382 114 EKNLTV 119
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
137-219 |
5.73e-07 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 49.15 E-value: 5.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 137 SSLSGGEKQRVLLARALAQE---PTLLLLDEPTNHL---DIKYQLDLLAIVKNLKINVLAVLHDIQLAcRYSDYLYLM-- 208
Cdd:cd03271 168 TTLSGGEAQRIKLAKELSKRstgKTLYILDEPTTGLhfhDVKKLLEVLQRLVDKGNTVVVIEHNLDVI-KCADWIIDLgp 246
|
90
....*....|....*
gi 896617071 209 ----KEGEILYQGTP 219
Cdd:cd03271 247 eggdGGGQVVASGTP 261
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
33-170 |
7.70e-07 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 50.01 E-value: 7.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 33 ILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHwSLKETAKQMAVVTQFNQLQFDCT-VEEIVLLGRTPHLSFLQKE 111
Cdd:TIGR01257 1970 LLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNMGYCPQFDAIDDLLTgREHLYLYARLRGVPAEEIE 2048
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 112 KERDYALVHDAL-VKVDmlekktRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLD 170
Cdd:TIGR01257 2049 KVANWSIQSLGLsLYAD------RLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMD 2102
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
137-221 |
1.49e-06 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 48.87 E-value: 1.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 137 SSLSGGEKQRVLLARALAQE---PTLLLLDEPTNHL---DIKyqlDLLAIVKNL--KIN-VLAVLHD---IQLAcrysDY 204
Cdd:COG0178 825 TTLSGGEAQRVKLASELSKRstgKTLYILDEPTTGLhfhDIR---KLLEVLHRLvdKGNtVVVIEHNldvIKTA----DW 897
|
90 100
....*....|....*....|...
gi 896617071 205 LYLM------KEGEILYQGTPKE 221
Cdd:COG0178 898 IIDLgpeggdGGGEIVAEGTPEE 920
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
32-217 |
1.94e-06 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 48.31 E-value: 1.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 32 TILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWS---LKETAKQMAVVTQ--FNQLQFDCTVEEIVLLGRTPHlS 106
Cdd:PRK10261 354 SLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSpgkLQALRRDIQFIFQdpYASLDPRQTVGDSIMEPLRVH-G 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 107 FLQKEKERdyALVHDALVKVDML-EKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLD--IKYQLD--LLAIV 181
Cdd:PRK10261 433 LLPGKAAA--ARVAWLLERVGLLpEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDvsIRGQIInlLLDLQ 510
|
170 180 190
....*....|....*....|....*....|....*.
gi 896617071 182 KNLKINVLAVLHDIQLACRYSDYLYLMKEGEILYQG 217
Cdd:PRK10261 511 RDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIG 546
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
137-217 |
2.34e-06 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 46.55 E-value: 2.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 137 SSLSGGEKQRVLLARALAQEP--TLLLLDEPTNHLD--IKYQL-DLLAIVKNLKINVLAVLHDIQLACrYSDYLYLMKE- 210
Cdd:cd03238 86 STLSGGELQRVKLASELFSEPpgTLFILDEPSTGLHqqDINQLlEVIKGLIDLGNTVILIEHNLDVLS-SADWIIDFGPg 164
|
90
....*....|..
gi 896617071 211 -----GEILYQG 217
Cdd:cd03238 165 sgksgGKVVFSG 176
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
21-213 |
5.91e-06 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 46.74 E-value: 5.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 21 VSLRVEGHQFHTILGPNGSGKTSLLKLLY-RQEKADKGLISLDGKPLEHWS-LKETAKQMAVVTQFNQLQfdcTVEEIVL 98
Cdd:TIGR02633 279 VSFSLRRGEILGVAGLVGAGRTELVQALFgAYPGKFEGNVFINGKPVDIRNpAQAIRAGIAMVPEDRKRH---GIVPILG 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 99 LGRTPHLSFLQK--EKERDYALVHDALVKVDMLEKKTRLYS------SLSGGEKQRVLLARALAQEPTLLLLDEPTNHLD 170
Cdd:TIGR02633 356 VGKNITLSVLKSfcFKMRIDAAAELQIIGSAIQRLKVKTASpflpigRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVD 435
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 896617071 171 IKYQLDLLAIVKNLK---INVLAVLHDIQLACRYSDYLYLMKEGEI 213
Cdd:TIGR02633 436 VGAKYEIYKLINQLAqegVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
137-175 |
7.76e-06 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 46.46 E-value: 7.76e-06
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 896617071 137 SSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDI--KYQL 175
Cdd:PRK13549 404 ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVgaKYEI 444
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
134-232 |
1.02e-05 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 46.16 E-value: 1.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 134 RLYSSLSGGEKQRVLLARALAQEPT--LLLLDEPTNHLDIKYQLDLLAIVKNLKI---NVLAVLHDIQlACRYSDYLYLM 208
Cdd:TIGR00630 484 RAAGTLSGGEAQRIRLATQIGSGLTgvLYVLDEPSIGLHQRDNRRLINTLKRLRDlgnTLIVVEHDED-TIRAADYVIDI 562
|
90 100 110
....*....|....*....|....*....|.
gi 896617071 209 KE------GEILYQGTPKETI-TPESLQTVY 232
Cdd:TIGR00630 563 GPgagehgGEVVASGTPEEILaNPDSLTGQY 593
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
13-221 |
1.22e-05 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 46.27 E-value: 1.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 13 GEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLK-LLYRQEKADKGLISLDGKplehwslketakqMAVVTQFNQLqFDC 91
Cdd:PLN03130 628 AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISaMLGELPPRSDASVVIRGT-------------VAYVPQVSWI-FNA 693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 92 TVEEIVLLGrtphLSFLQKEKERDY---ALVHD--ALVKVDMLEKKTRlYSSLSGGEKQRVLLARALAQEPTLLLLDEPT 166
Cdd:PLN03130 694 TVRDNILFG----SPFDPERYERAIdvtALQHDldLLPGGDLTEIGER-GVNISGGQKQRVSMARAVYSNSDVYIFDDPL 768
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 896617071 167 NHLD--IKYQLDLLAIVKNL--KINVLAV--LHDIQlacrYSDYLYLMKEGEILYQGTPKE 221
Cdd:PLN03130 769 SALDahVGRQVFDKCIKDELrgKTRVLVTnqLHFLS----QVDRIILVHEGMIKEEGTYEE 825
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
33-164 |
1.98e-05 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 45.17 E-value: 1.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 33 ILGPNGSGKTSLLKL---LYRqekADKGLISLDGKPLEHWSLkETAKQM--AVVTQFnqlqfdctveeivllgrtpHL-- 105
Cdd:COG4615 363 IVGGNGSGKSTLAKLltgLYR---PESGEILLDGQPVTADNR-EAYRQLfsAVFSDF-------------------HLfd 419
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 896617071 106 SFLQKEKERDYALVHDALVKVDMlEKKTRL----YSS--LSGGEKQRVLLARALAQEPTLLLLDE 164
Cdd:COG4615 420 RLLGLDGEADPARARELLERLEL-DHKVSVedgrFSTtdLSQGQRKRLALLVALLEDRPILVFDE 483
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
134-228 |
2.56e-05 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 45.20 E-value: 2.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 134 RLYSSLSGGEKQRVLLARAL---AQEPTLLLLDEPTNHL---DIKYQLDLLAIVKNLKINVLAVLHDIQLAcRYSDYLYL 207
Cdd:PRK00635 805 RPLSSLSGGEIQRLKLAYELlapSKKPTLYVLDEPTTGLhthDIKALIYVLQSLTHQGHTVVIIEHNMHVV-KVADYVLE 883
|
90 100 110
....*....|....*....|....*....|
gi 896617071 208 M------KEGEILYQGTPKETI---TPESL 228
Cdd:PRK00635 884 LgpeggnLGGYLLASCSPEELIhlhTPTAK 913
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
14-221 |
2.73e-05 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 44.97 E-value: 2.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 14 EKKILKGVSLRVEGHQFHTILGPNGSGKTSLLK-LLYRQEKADKGLISLDGkplehwslketakQMAVVTQFNQLqFDCT 92
Cdd:PLN03232 629 SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISaMLGELSHAETSSVVIRG-------------SVAYVPQVSWI-FNAT 694
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 93 VEEIVLLGRtphlsflQKEKERDY------ALVHDA--LVKVDMLEKKTRlYSSLSGGEKQRVLLARALAQEPTLLLLDE 164
Cdd:PLN03232 695 VRENILFGS-------DFESERYWraidvtALQHDLdlLPGRDLTEIGER-GVNISGGQKQRVSMARAVYSNSDIYIFDD 766
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 896617071 165 PTNHLD--IKYQLDLLAIVKNL--KINVLAV--LHDIQLAcrysDYLYLMKEGEILYQGTPKE 221
Cdd:PLN03232 767 PLSALDahVAHQVFDSCMKDELkgKTRVLVTnqLHFLPLM----DRIILVSEGMIKEEGTFAE 825
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
134-228 |
4.23e-05 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 44.25 E-value: 4.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 134 RLYSSLSGGEKQRVLLARALAQEPT--LLLLDEPTNHLdikYQLD---LLAIVKNLKI--N-VLAVLHD---IQLAcrys 202
Cdd:COG0178 481 RSAGTLSGGEAQRIRLATQIGSGLVgvLYVLDEPSIGL---HQRDndrLIETLKRLRDlgNtVIVVEHDedtIRAA---- 553
|
90 100 110
....*....|....*....|....*....|...
gi 896617071 203 DYLYLM------KEGEILYQGTPKETI-TPESL 228
Cdd:COG0178 554 DYIIDIgpgageHGGEVVAQGTPEEILkNPDSL 586
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
137-175 |
4.34e-05 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 44.34 E-value: 4.34e-05
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 896617071 137 SSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIK-----YQL 175
Cdd:PRK10982 390 GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGakfeiYQL 433
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
133-217 |
5.29e-05 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 43.02 E-value: 5.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 133 TRLYSSLSGGEKQRVLLARALAQEPT--LLLLDEPTNHLDIKYQLDLLAIVKNLKI---NVLAVLHDIQLAcRYSDYLYL 207
Cdd:cd03270 132 SRSAPTLSGGEAQRIRLATQIGSGLTgvLYVLDEPSIGLHPRDNDRLIETLKRLRDlgnTVLVVEHDEDTI-RAADHVID 210
|
90
....*....|....*.
gi 896617071 208 M------KEGEILYQG 217
Cdd:cd03270 211 IgpgagvHGGEIVAQG 226
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
33-211 |
5.41e-05 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 43.97 E-value: 5.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 33 ILGPNGSGKTSLLKLL---------YRQEKADKGLISLDGKPLehwslketakqMAVVTQFNQLQFDCTVEEIVLLGrtp 103
Cdd:TIGR00954 483 ICGPNGCGKSSLFRILgelwpvyggRLTKPAKGKLFYVPQRPY-----------MTLGTLRDQIIYPDSSEDMKRRG--- 548
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 104 hlsFLQKEKERDYALVH-DALVKVDMLEKKTRLYSS-LSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIKYQLDLLAIV 181
Cdd:TIGR00954 549 ---LSDKDLEQILDNVQlTHILEREGGWSAVQDWMDvLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLC 625
|
170 180 190
....*....|....*....|....*....|
gi 896617071 182 KNLKINVLAVLHDIQLACRYSDYLYLMKEG 211
Cdd:TIGR00954 626 REFGITLFSVSHRKSLWKYHEYLLYMDGRG 655
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
139-178 |
1.21e-04 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 43.14 E-value: 1.21e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 896617071 139 LSGGEKQRVLLARALAQEPT---LLLLDEPTNHL---DIKYQLDLL 178
Cdd:PRK00349 831 LSGGEAQRVKLAKELSKRSTgktLYILDEPTTGLhfeDIRKLLEVL 876
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
18-184 |
1.71e-04 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 42.30 E-value: 1.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 18 LKGVSLRVEGHqfHTIL-GPNGSGKTSLLKLL-----------------YRQEKADKGLISLD-------GKPLEHWSLK 72
Cdd:COG3593 14 IKDLSIELSDD--LTVLvGENNSGKSSILEALrlllgpsssrkfdeedfYLGDDPDLPEIEIEltfgsllSRLLRLLLKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 73 ETAKQMAVVTQFNQLQFDCTVEEI----------VLLGRTPHLSFLQKEKERDYALVhdalvKVDMLEKKTRLYSSLSGG 142
Cdd:COG3593 92 EDKEELEEALEELNEELKEALKALnellseylkeLLDGLDLELELSLDELEDLLKSL-----SLRIEDGKELPLDRLGSG 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 896617071 143 EKQRVLLA--RALAQ-----EPTLLLLDEPTNHLDIKYQLDLLAIVKNL 184
Cdd:COG3593 167 FQRLILLAllSALAElkrapANPILLIEEPEAHLHPQAQRRLLKLLKEL 215
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
138-173 |
1.74e-04 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 42.47 E-value: 1.74e-04
10 20 30
....*....|....*....|....*....|....*...
gi 896617071 138 SLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDI--KY 173
Cdd:NF040905 404 NLSGGNQQKVVLSKWLFTDPDVLILDEPTRGIDVgaKY 441
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
139-166 |
5.95e-04 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 40.88 E-value: 5.95e-04
10 20
....*....|....*....|....*...
gi 896617071 139 LSGGEKQRVLLARALAQEPTLLLLDEPT 166
Cdd:NF033858 137 LSGGMKQKLGLCCALIHDPDLLILDEPT 164
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
94-224 |
6.25e-04 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 40.49 E-value: 6.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 94 EEIVLLGRTPHLSflqkeKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIKY 173
Cdd:NF000106 105 ENLYMIGR*LDLS-----RKDARARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPTTGLDPRT 179
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 896617071 174 QLDLLAIVKNL---KINVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETIT 224
Cdd:NF000106 180 RNEVWDEVRSMvrdGATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDELKT 233
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
134-237 |
7.97e-04 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 40.58 E-value: 7.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 134 RLYSSLSGGEKQRVLLARALAQEPT--LLLLDEPTNHLDIKYQLDLLAIVKNLKI---NVLAVLHD---IQLACRYSDY- 204
Cdd:PRK00635 472 RALATLSGGEQERTALAKHLGAELIgiTYILDEPSIGLHPQDTHKLINVIKKLRDqgnTVLLVEHDeqmISLADRIIDIg 551
|
90 100 110
....*....|....*....|....*....|....*...
gi 896617071 205 ----LYlmkEGEILYQGTPKETI-TPESLQTVYGVQSQ 237
Cdd:PRK00635 552 pgagIF---GGEVLFNGSPREFLaKSDSLTAKYLRQEL 586
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
7-185 |
9.34e-04 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 39.16 E-value: 9.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 7 DIHFGLGEKKILKGVSLRVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHwSLKETAKQMAVVTQFNQ 86
Cdd:PRK13540 6 ELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCFVGHRSG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 87 LQFDCTVEEIVLLgrTPHLSflqkekerDYALVHDALVKVDMLEKKTRLYSS-LSGGEKQRVLLARALAQEPTLLLLDEP 165
Cdd:PRK13540 85 INPYLTLRENCLY--DIHFS--------PGAVGITELCRLFSLEHLIDYPCGlLSSGQKRQVALLRLWMSKAKLWLLDEP 154
|
170 180
....*....|....*....|
gi 896617071 166 TNHLDikyQLDLLAIVKNLK 185
Cdd:PRK13540 155 LVALD---ELSLLTIITKIQ 171
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
105-197 |
1.09e-03 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 39.68 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 105 LSFLQKEKERDYALVHDALVKVDMLEKKTRLYSSLSGGEKQ---RVLLARALAQEPTLLLLDEPTNHLDIKYQ---LDLL 178
Cdd:pfam13304 203 GEGIEKSLLVDDRLRERGLILLENGGGGELPAFELSDGTKRllaLLAALLSALPKGGLLLIDEPESGLHPKLLrrlLELL 282
|
90
....*....|....*....
gi 896617071 179 AIVKNLKINVLAVLHDIQL 197
Cdd:pfam13304 283 KELSRNGAQLILTTHSPLL 301
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
138-182 |
4.08e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 38.34 E-value: 4.08e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 896617071 138 SLSGGEKQ------RVLLARALAQEPTLLLLDEPTNHLDIKYQLDLLAIVK 182
Cdd:PRK01156 801 SLSGGEKTavafalRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIE 851
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
33-206 |
5.36e-03 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 36.82 E-value: 5.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 33 ILGPNGSGKTSLLK-LLYrqekADKGLISLDGKPLEHW-SLKETAKQMAVVTqfnqLQFDCTVEEIVLLGRTPHLsFLQ- 109
Cdd:cd03240 27 IVGQNGAGKTTIIEaLKY----ALTGELPPNSKGGAHDpKLIREGEVRAQVK----LAFENANGKKYTITRSLAI-LENv 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 896617071 110 ---KEKERDYALVhdalvkvDMLEkktrlysSLSGGEKQ------RVLLARALAQEPTLLLLDEPTNHLD---IKYQL-D 176
Cdd:cd03240 98 ifcHQGESNWPLL-------DMRG-------RCSGGEKVlasliiRLALAETFGSNCGILALDEPTTNLDeenIEESLaE 163
|
170 180 190
....*....|....*....|....*....|.
gi 896617071 177 LLAIVKNLKI-NVLAVLHDIQLAcRYSDYLY 206
Cdd:cd03240 164 IIEERKSQKNfQLIVITHDEELV-DAADHIY 193
|
|
| |
