|
Name |
Accession |
Description |
Interval |
E-value |
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
4-549 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 686.96 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 4 WNQCLERLRQELPTQQFSMWIRPLVCEE-QQGVVALYAPNRFVLDWVRDKYLNNITALLKEFAGSDaPQLRLEVmnrhsv 82
Cdd:TIGR00362 1 WNRILERLEKELSEQEYNTWFKPLKLLSiEGNTLIISVPNEFVKEWIEKNYLDLIEELLQELFGAE-IEIEFTV------ 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 83 srsqpvstsgsSPAPNTPNNQPSKPsapaggqgyqnynpsnqpvhsgsngqhtssyspmsnsgmpssasqagdqgqnnaf 162
Cdd:TIGR00362 74 -----------GEDEEELEPNSKKP------------------------------------------------------- 87
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 163 skspsytqgmdlndrgaqnhdrngynayadqaprsstPPKVIPIPEAMKHKSNINPTYQFDNFVEGKSNQLARAAATQVA 242
Cdd:TIGR00362 88 -------------------------------------EPAPPEAPAPPSSASGLNPKYTFDNFVVGKSNRLAHAAALAVA 130
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 243 NNPGGSYNPLFIYGGTGLGKTHLLHAVGNGIVANNGDAKIVYMHSERFVQDMVKALQNNAIEDFKRFYRSVDALLIDDIQ 322
Cdd:TIGR00362 131 ENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVLYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQ 210
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 323 FFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEIDGVEDRLKSRFGWGLTIAIEPPELETRVAILMRKAAENRIHLP 402
Cdd:TIGR00362 211 FLAGKERTQEEFFHTFNALHENNKQIVLTSDRPPKELPGLEDRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELP 290
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 403 NEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDLLALQEKLVTVDNIQKTVADYYKIKVADILSKR 482
Cdd:TIGR00362 291 DEVLEFIAKNITSNVRELEGALNRLLAYASLTGKPITLELAKEALKDLLRAQKKEITIENIQKVVAKYYNIKVSDLKSKK 370
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 898332789 483 RSRSVARPRQVAMALAKELTNHSLPELGNAFGGRDHTTVLHACRKIEQLREESHDIKEDYKNLIRTL 549
Cdd:TIGR00362 371 RTRNIVRPRQIAMYLAKELTDLSLPEIGKAFGGRDHTTVLHAVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
1-551 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 683.02 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 1 MSLWNQCLERLRQELPTQQFSMWIRPL-VCEEQQGVVALYAPNRFVLDWVRDKYLNNITALLKefagsdapqlrlevmnr 79
Cdd:PRK00149 3 QSLWEKVLERLKDELSEQEYETWIKPLkALSLEDNTLTLYVPNRFVKDWIEKNYLDLIEEALQ----------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 80 hsvsrsqpvstsgsspapntpnnqpskpsapaggqgyqnynpsnqpvhsgsngqhtssyspmsnsgmpssasqagdqgqn 159
Cdd:PRK00149 --------------------------------------------------------------------------------
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 160 nafskspsytqgmdlndrgaqnhdrngynayadqaprsstppkvipipeamkhksnINPTYQFDNFVEGKSNQLARAAAT 239
Cdd:PRK00149 66 --------------------------------------------------------LNPKYTFDNFVVGKSNRLAHAAAL 89
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 240 QVANNPGGSYNPLFIYGGTGLGKTHLLHAVGNGIVANNGDAKIVYMHSERFVQDMVKALQNNAIEDFKRFYRSVDALLID 319
Cdd:PRK00149 90 AVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLID 169
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 320 DIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEIDGVEDRLKSRFGWGLTIAIEPPELETRVAILMRKAAENRI 399
Cdd:PRK00149 170 DIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGI 249
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 400 HLPNEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDLLALQEKLVTVDNIQKTVADYYKIKVADIL 479
Cdd:PRK00149 250 DLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDLLAAQKKKITIENIQKVVAEYYNIKVSDLK 329
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 898332789 480 SKRRSRSVARPRQVAMALAKELTNHSLPELGNAFGGRDHTTVLHACRKIEQLREESHDIKEDYKNLIRTLSS 551
Cdd:PRK00149 330 SKSRTRNIARPRQIAMYLAKELTDLSLPEIGRAFGGRDHTTVLHAVRKIEKLLEEDPELKEDVEELKRKLKS 401
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
216-518 |
0e+00 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 556.34 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 216 INPTYQFDNFVEGKSNQLARAAATQVANNPGGSYNPLFIYGGTGLGKTHLLHAVGNGIVANNGDAKIVYMHSERFVQDMV 295
Cdd:COG0593 1 LNPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 296 KALQNNAIEDFKRFYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEIDGVEDRLKSRFGWGLT 375
Cdd:COG0593 81 NAIRNNTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWGLV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 376 IAIEPPELETRVAILMRKAAENRIHLPNEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDLLALQE 455
Cdd:COG0593 161 VDIQPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDLLRAQK 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 898332789 456 KLVTVDNIQKTVADYYKIKVADILSKRRSRSVARPRQVAMALAKELTNHSLPELGNAFGGRDH 518
Cdd:COG0593 241 KEITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
216-434 |
4.58e-128 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 373.20 E-value: 4.58e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 216 INPTYQFDNFVEGKSNQLARAAATQVANNPGGSYNPLFIYGGTGLGKTHLLHAVGNGIVANNGDAKIVYMHSERFVQDMV 295
Cdd:pfam00308 1 LNPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 296 KALQNNAIEDFKRFYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEIDGVEDRLKSRFGWGLT 375
Cdd:pfam00308 81 DAIRDNKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWGLV 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 898332789 376 IAIEPPELETRVAILMRKAAENRIHLPNEVAFFIAKRLRSNVRELEGALNRVIANANFT 434
Cdd:pfam00308 161 TDIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSLN 219
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
460-549 |
2.78e-43 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 148.82 E-value: 2.78e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 460 VDNIQKTVADYYKIKVADILSKRRSRSVARPRQVAMALAKELTNHSLPELGNAFGGRDHTTVLHACRKIEQLREESHDIK 539
Cdd:cd06571 1 IELIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELK 80
|
90
....*....|
gi 898332789 540 EDYKNLIRTL 549
Cdd:cd06571 81 EDVEELEKKL 90
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
459-527 |
1.43e-37 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 132.63 E-value: 1.43e-37
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 898332789 459 TVDNIQKTVADYYKIKVADILSKRRSRSVARPRQVAMALAKELTNHSLPELGNAFGGRDHTTVLHACRK 527
Cdd:smart00760 1 TIEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
4-549 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 686.96 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 4 WNQCLERLRQELPTQQFSMWIRPLVCEE-QQGVVALYAPNRFVLDWVRDKYLNNITALLKEFAGSDaPQLRLEVmnrhsv 82
Cdd:TIGR00362 1 WNRILERLEKELSEQEYNTWFKPLKLLSiEGNTLIISVPNEFVKEWIEKNYLDLIEELLQELFGAE-IEIEFTV------ 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 83 srsqpvstsgsSPAPNTPNNQPSKPsapaggqgyqnynpsnqpvhsgsngqhtssyspmsnsgmpssasqagdqgqnnaf 162
Cdd:TIGR00362 74 -----------GEDEEELEPNSKKP------------------------------------------------------- 87
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 163 skspsytqgmdlndrgaqnhdrngynayadqaprsstPPKVIPIPEAMKHKSNINPTYQFDNFVEGKSNQLARAAATQVA 242
Cdd:TIGR00362 88 -------------------------------------EPAPPEAPAPPSSASGLNPKYTFDNFVVGKSNRLAHAAALAVA 130
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 243 NNPGGSYNPLFIYGGTGLGKTHLLHAVGNGIVANNGDAKIVYMHSERFVQDMVKALQNNAIEDFKRFYRSVDALLIDDIQ 322
Cdd:TIGR00362 131 ENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVLYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQ 210
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 323 FFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEIDGVEDRLKSRFGWGLTIAIEPPELETRVAILMRKAAENRIHLP 402
Cdd:TIGR00362 211 FLAGKERTQEEFFHTFNALHENNKQIVLTSDRPPKELPGLEDRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELP 290
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 403 NEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDLLALQEKLVTVDNIQKTVADYYKIKVADILSKR 482
Cdd:TIGR00362 291 DEVLEFIAKNITSNVRELEGALNRLLAYASLTGKPITLELAKEALKDLLRAQKKEITIENIQKVVAKYYNIKVSDLKSKK 370
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 898332789 483 RSRSVARPRQVAMALAKELTNHSLPELGNAFGGRDHTTVLHACRKIEQLREESHDIKEDYKNLIRTL 549
Cdd:TIGR00362 371 RTRNIVRPRQIAMYLAKELTDLSLPEIGKAFGGRDHTTVLHAVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
1-551 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 683.02 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 1 MSLWNQCLERLRQELPTQQFSMWIRPL-VCEEQQGVVALYAPNRFVLDWVRDKYLNNITALLKefagsdapqlrlevmnr 79
Cdd:PRK00149 3 QSLWEKVLERLKDELSEQEYETWIKPLkALSLEDNTLTLYVPNRFVKDWIEKNYLDLIEEALQ----------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 80 hsvsrsqpvstsgsspapntpnnqpskpsapaggqgyqnynpsnqpvhsgsngqhtssyspmsnsgmpssasqagdqgqn 159
Cdd:PRK00149 --------------------------------------------------------------------------------
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 160 nafskspsytqgmdlndrgaqnhdrngynayadqaprsstppkvipipeamkhksnINPTYQFDNFVEGKSNQLARAAAT 239
Cdd:PRK00149 66 --------------------------------------------------------LNPKYTFDNFVVGKSNRLAHAAAL 89
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 240 QVANNPGGSYNPLFIYGGTGLGKTHLLHAVGNGIVANNGDAKIVYMHSERFVQDMVKALQNNAIEDFKRFYRSVDALLID 319
Cdd:PRK00149 90 AVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLID 169
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 320 DIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEIDGVEDRLKSRFGWGLTIAIEPPELETRVAILMRKAAENRI 399
Cdd:PRK00149 170 DIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGI 249
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 400 HLPNEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDLLALQEKLVTVDNIQKTVADYYKIKVADIL 479
Cdd:PRK00149 250 DLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDLLAAQKKKITIENIQKVVAEYYNIKVSDLK 329
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 898332789 480 SKRRSRSVARPRQVAMALAKELTNHSLPELGNAFGGRDHTTVLHACRKIEQLREESHDIKEDYKNLIRTLSS 551
Cdd:PRK00149 330 SKSRTRNIARPRQIAMYLAKELTDLSLPEIGRAFGGRDHTTVLHAVRKIEKLLEEDPELKEDVEELKRKLKS 401
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
216-518 |
0e+00 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 556.34 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 216 INPTYQFDNFVEGKSNQLARAAATQVANNPGGSYNPLFIYGGTGLGKTHLLHAVGNGIVANNGDAKIVYMHSERFVQDMV 295
Cdd:COG0593 1 LNPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 296 KALQNNAIEDFKRFYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEIDGVEDRLKSRFGWGLT 375
Cdd:COG0593 81 NAIRNNTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWGLV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 376 IAIEPPELETRVAILMRKAAENRIHLPNEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDLLALQE 455
Cdd:COG0593 161 VDIQPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDLLRAQK 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 898332789 456 KLVTVDNIQKTVADYYKIKVADILSKRRSRSVARPRQVAMALAKELTNHSLPELGNAFGGRDH 518
Cdd:COG0593 241 KEITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
216-434 |
4.58e-128 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 373.20 E-value: 4.58e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 216 INPTYQFDNFVEGKSNQLARAAATQVANNPGGSYNPLFIYGGTGLGKTHLLHAVGNGIVANNGDAKIVYMHSERFVQDMV 295
Cdd:pfam00308 1 LNPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 296 KALQNNAIEDFKRFYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEIDGVEDRLKSRFGWGLT 375
Cdd:pfam00308 81 DAIRDNKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWGLV 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 898332789 376 IAIEPPELETRVAILMRKAAENRIHLPNEVAFFIAKRLRSNVRELEGALNRVIANANFT 434
Cdd:pfam00308 161 TDIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSLN 219
|
|
| dnaA |
PRK14086 |
chromosomal replication initiator protein DnaA; |
93-538 |
1.66e-116 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 357.98 E-value: 1.66e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 93 SSPAPNTPNNQPSKPSA-PAGGQGYQNYNPSNQPVHSGSNG--QHTSSYSPMSNSGMPSSAS-------QAGDQGQNNAF 162
Cdd:PRK14086 126 ADDRPPGLPRQDQLPTArPAYPAYQQRPEPGAWPRAADDYGwqQQRLGFPPRAPYASPASYApeqerdrEPYDAGRPEYD 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 163 SKSPSY-TQGMDLNDRGAQNHDRNGYNAYADQAPRSSTPPKVI------------PIPEAMKHKSN---------INPTY 220
Cdd:PRK14086 206 QRRRDYdHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERddapvvpirpsaPGPLAAQPAPApgpgeptarLNPKY 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 221 QFDNFVEGKSNQLARAAATQVANNPGGSYNPLFIYGGTGLGKTHLLHAVGNGIVANNGDAKIVYMHSERFVQDMVKALQN 300
Cdd:PRK14086 286 TFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRD 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 301 NAIEDFKRFYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEIDGVEDRLKSRFGWGLTIAIEP 380
Cdd:PRK14086 366 GKGDSFRRRYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQP 445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 381 PELETRVAILMRKAAENRIHLPNEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDLLALQEKL-VT 459
Cdd:PRK14086 446 PELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLRDLIPEDSAPeIT 525
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 898332789 460 VDNIQKTVADYYKIKVADILSKRRSRSVARPRQVAMALAKELTNHSLPELGNAFgGRDHTTVLHACRKIEQLREESHDI 538
Cdd:PRK14086 526 AAAIMAATADYFGLTVEDLCGTSRSRVLVTARQIAMYLCRELTDLSLPKIGQQF-GRDHTTVMHADRKIRALMAERRSI 603
|
|
| PRK12422 |
PRK12422 |
chromosomal replication initiator protein DnaA; |
215-551 |
7.79e-75 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 183521 [Multi-domain] Cd Length: 445 Bit Score: 244.36 E-value: 7.79e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 215 NINPTYQFDNFVEGKSNQLARAAATQVANNP----GGSYNPLFIYGGTGLGKTHLLHAVGNGIVANNGdaKIVYMHSERF 290
Cdd:PRK12422 103 ELDPLMTFANFLVTPENDLPHRILQEFTKVSeqgkGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGG--KILYVRSELF 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 291 VQDMVKALQNNAIEDFKRFYRSVDALLIDDIQFFANKERSQEEFFHTFNAL-LEGnQQIILTSDRYPKEIDGVEDRLKSR 369
Cdd:PRK12422 181 TEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLhTEG-KLIVISSTCAPQDLKAMEERLISR 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 370 FGWGLTIAIEPPELETRVAILMRKAAENRIHLPNEVAFFIAKRLRSNVRELEGALNRV---IANANFTGRPITIDFVREA 446
Cdd:PRK12422 260 FEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLLakrVAYKKLSHQLLYVDDIKAL 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 447 LRDLLALQEKL-VTVDNIQKTVADYYKIKVADILSKRRSRSVARPRQVAMALAKELTNHSLPELGNAFgGRDHTTVLHAC 525
Cdd:PRK12422 340 LHDVLEAAESVrLTPSKIIRAVAQYYGVSPESILGRSQSREYVLPRQVAMYLCRQKLSLSYVKIGDVF-SRDHSTVISSI 418
|
330 340
....*....|....*....|....*..
gi 898332789 526 RKIEQ-LREESHDIKEDYKNLIRTLSS 551
Cdd:PRK12422 419 RAISQkLEEDDRDISMAIQEITKRLSS 445
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
460-549 |
2.78e-43 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 148.82 E-value: 2.78e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 460 VDNIQKTVADYYKIKVADILSKRRSRSVARPRQVAMALAKELTNHSLPELGNAFGGRDHTTVLHACRKIEQLREESHDIK 539
Cdd:cd06571 1 IELIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELK 80
|
90
....*....|
gi 898332789 540 EDYKNLIRTL 549
Cdd:cd06571 81 EDVEELEKKL 90
|
|
| Bac_DnaA_C |
pfam08299 |
Bacterial dnaA protein helix-turn-helix; |
460-528 |
6.33e-39 |
|
Bacterial dnaA protein helix-turn-helix;
Pssm-ID: 462419 [Multi-domain] Cd Length: 69 Bit Score: 136.38 E-value: 6.33e-39
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 898332789 460 VDNIQKTVADYYKIKVADILSKRRSRSVARPRQVAMALAKELTNHSLPELGNAFGGRDHTTVLHACRKI 528
Cdd:pfam08299 1 IEKIIEAVAEYFGISPEDLKSKSRKREIALARQIAMYLARELTDLSLPEIGRAFGGRDHSTVIHACKKI 69
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
459-527 |
1.43e-37 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 132.63 E-value: 1.43e-37
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 898332789 459 TVDNIQKTVADYYKIKVADILSKRRSRSVARPRQVAMALAKELTNHSLPELGNAFGGRDHTTVLHACRK 527
Cdd:smart00760 1 TIEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| DnaA_homol_Hda |
TIGR03420 |
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). ... |
222-448 |
7.98e-34 |
|
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274571 [Multi-domain] Cd Length: 226 Bit Score: 128.08 E-value: 7.98e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 222 FDNFVEGkSNQLARAAATQVANNPGGsyNPLFIYGGTGLGKTHLLHAVGNGivANNGDAKIVYMHSERFVQDMVKALqnN 301
Cdd:TIGR03420 14 FDNFYAG-GNAELLAALRQLAAGKGD--RFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQADPEVL--E 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 302 AIEDFkrfyrsvDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEIDGVEDRLKSRFGWGLTIAIEPP 381
Cdd:TIGR03420 87 GLEQA-------DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 898332789 382 ELETRVAILMRKAAENRIHLPNEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALR 448
Cdd:TIGR03420 160 SDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKRKITIPFVKEVLA 226
|
|
| DnaA_N |
pfam11638 |
DnaA N-terminal domain; This family of proteins represents the N-terminal domain of DnaA, a ... |
1-63 |
9.45e-21 |
|
DnaA N-terminal domain; This family of proteins represents the N-terminal domain of DnaA, a protein involved in the initiation of bacterial chromosomal replication. The structure of this domain is known. It is also found in three copies in some proteins. The exact function of this domain is uncertain but it has been suggested to play a role in oligomerization.
Pssm-ID: 463316 [Multi-domain] Cd Length: 65 Bit Score: 85.80 E-value: 9.45e-21
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 898332789 1 MSLWNQCLERLRQELPTQQFSMWIRPLVCE--EQQGVVALYAPNRFVLDWVRDKYLNNITALLKE 63
Cdd:pfam11638 1 EELWERVLERLRKEVGEQTFNTWIKPLTLVdlDDGGSLTLSVPNRFVRDWVEEHYLDRILELWQE 65
|
|
| PRK08084 |
PRK08084 |
DnaA inactivator Hda; |
222-448 |
2.06e-19 |
|
DnaA inactivator Hda;
Pssm-ID: 181224 [Multi-domain] Cd Length: 235 Bit Score: 87.43 E-value: 2.06e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 222 FDNFVEGKSNQLArAAATQVANNPGGSYnpLFIYGGTGLGKTHLLHAVGNgiVANNGDAKIVYMHSER---FVQDMVKAL 298
Cdd:PRK08084 21 FASFYPGDNDSLL-AALQNALRQEHSGY--IYLWSREGAGRSHLLHAACA--ELSQRGRAVGYVPLDKrawFVPEVLEGM 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 299 QnnaiedfkrfyrSVDALLIDDIQFFANKERSQEEFFHTFNALLE-GNQQIILTSDRYPKEIDGVEDRLKSRFGWGLTIA 377
Cdd:PRK08084 96 E------------QLSLVCIDNIECIAGDELWEMAIFDLYNRILEsGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYK 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 898332789 378 IEPPELETRVAILMRKAAENRIHLPNEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALR 448
Cdd:PRK08084 164 LQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 234
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
231-374 |
1.29e-18 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 82.96 E-value: 1.29e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 231 NQLARAAATQVANNPggSYNPLFIYGGTGLGKTHLLHAVGNGIVANNgdAKIVYMHSERFVQDMVKALQNNAIEDFKRF- 309
Cdd:cd00009 3 QEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPG--APFLYLNASDLLEGLVVAELFGHFLVRLLFe 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 898332789 310 ---YRSVDALLIDDIQFFANKERSQ-EEFFHTFNALLE--GNQQIILTSDR--YPKEIDGVEDRLKSRFGWGL 374
Cdd:cd00009 79 laeKAKPGVLFIDEIDSLSRGAQNAlLRVLETLNDLRIdrENVRVIGATNRplLGDLDRALYDRLDIRIVIPL 151
|
|
| PRK08903 |
PRK08903 |
DnaA regulatory inactivator Hda; Validated |
218-451 |
1.22e-16 |
|
DnaA regulatory inactivator Hda; Validated
Pssm-ID: 236347 [Multi-domain] Cd Length: 227 Bit Score: 79.25 E-value: 1.22e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 218 PTyqFDNFVEGKSNQL-ARAAATQVANNPGGSYnplFIYGGTGLGKTHLLHAVGNgiVANNGDAKIVYMhserfvqdmvk 296
Cdd:PRK08903 15 PT--FDNFVAGENAELvARLRELAAGPVADRFF---YLWGEAGSGRSHLLQALVA--DASYGGRNARYL----------- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 297 aLQNNAIEDFKrFYRSVDALLIDDIQFFANKErsQEEFFHTFNALLEGNQQIILTS-DRYPKEIDGVEDrLKSRFGWGLT 375
Cdd:PRK08903 77 -DAASPLLAFD-FDPEAELYAVDDVERLDDAQ--QIALFNLFNRVRAHGQGALLVAgPAAPLALPLRED-LRTRLGWGLV 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 898332789 376 IAIEPPELETRVAILMRKAAENRIHLPNEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDLL 451
Cdd:PRK08903 152 YELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQKRPVTLPLLREMLAQPE 227
|
|
| PRK06030 |
PRK06030 |
hypothetical protein; Provisional |
476-534 |
3.36e-12 |
|
hypothetical protein; Provisional
Pssm-ID: 180356 Cd Length: 124 Bit Score: 63.64 E-value: 3.36e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 476 ADILS-KRRSRSVARPRQVAMALAKELTNHSLPELGNAFGgRDHTTVLHACRKIEQLREE 534
Cdd:PRK06030 41 AEIASpLRGRREVSRIRQIAMYVAHVSLGWPMNEVALAFG-RDRTTVGHACHTVEDLRDD 99
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
252-352 |
6.48e-09 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 56.71 E-value: 6.48e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 252 LFIYGGTGLGKTHLLHAVGNGiVANNGdAKIVYMHSERFVQDMVKALQNNAIEDFKRFYRSVDALLIDDIQFFANKERSQ 331
Cdd:COG1484 102 LILLGPPGTGKTHLAIALGHE-ACRAG-YRVRFTTAPDLVNELKEARADGRLERLLKRLAKVDLLILDELGYLPLDAEGA 179
|
90 100
....*....|....*....|.
gi 898332789 332 EEFFHTFNALLEgNQQIILTS 352
Cdd:COG1484 180 ELLFELISDRYE-RRSTIITS 199
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
250-370 |
1.97e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 53.53 E-value: 1.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 250 NPLFIYGGTGLGKTHLLHAVGNGIVANNGdaKIVYMHSERFVQDMVKALQNNAIEDFKRF---------------YRSVD 314
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGG--GVIYIDGEDILEEVLDQLLLIIVGGKKASgsgelrlrlalalarKLKPD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 898332789 315 ALLIDDIQFFANKERSQEEFFHTFNALL-----EGNQQIILTSDRYPKEIDGVedrLKSRF 370
Cdd:smart00382 81 VLILDEITSLLDAEQEALLLLLEELRLLlllksEKNLTVILTTNDEKDLGPAL---LRRRF 138
|
|
| PRK08939 |
PRK08939 |
primosomal protein DnaI; Reviewed |
231-321 |
2.21e-06 |
|
primosomal protein DnaI; Reviewed
Pssm-ID: 236353 [Multi-domain] Cd Length: 306 Bit Score: 49.48 E-value: 2.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 231 NQLARAAATQVAN------NPGGSYNPLFIYGGTGLGKTHLLHAVGNGIVANNGDAKIVYMHSerFVQDMVKALQNNAIE 304
Cdd:PRK08939 132 DDRDRLDALMAALdfleayPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPE--FIRELKNSISDGSVK 209
|
90
....*....|....*..
gi 898332789 305 DFKRFYRSVDALLIDDI 321
Cdd:PRK08939 210 EKIDAVKEAPVLMLDDI 226
|
|
| PRK06835 |
PRK06835 |
DNA replication protein DnaC; Validated |
252-370 |
1.17e-05 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 235871 [Multi-domain] Cd Length: 329 Bit Score: 47.59 E-value: 1.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 252 LFIYGGTGLGKTHLLHAVGNGIVANngdAKIV-YMHSERFVQDMVKA-LQNNAIEDFKR-FYRSVDALLIDDIQFFANKE 328
Cdd:PRK06835 186 LLFYGNTGTGKTFLSNCIAKELLDR---GKSViYRTADELIEILREIrFNNDKELEEVYdLLINCDLLIIDDLGTEKITE 262
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 898332789 329 RSQEEFFHTFNA-LLEGNQQIILT-------SDRYPKEIdgvEDRLKSRF 370
Cdd:PRK06835 263 FSKSELFNLINKrLLRQKKMIISTnlsleelLKTYSERI---SSRLLGNF 309
|
|
| PRK06620 |
PRK06620 |
hypothetical protein; Validated |
217-447 |
3.63e-04 |
|
hypothetical protein; Validated
Pssm-ID: 168630 Cd Length: 214 Bit Score: 42.14 E-value: 3.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 217 NPTYQFDNFVEGKSNQLARAAATQVANNPGgsYNP----LFIYGGTGLGKTHLlhavgngivanngdAKIVYMHSERFVq 292
Cdd:PRK06620 10 SSKYHPDEFIVSSSNDQAYNIIKNWQCGFG--VNPykftLLIKGPSSSGKTYL--------------TKIWQNLSNAYI- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 293 dmVKALQNNAiedfkRFYRSVDALLIDDIQFFANKErsqeeFFHTFNALLEGNQQIILTSDRYPKEIdgVEDRLKSRFGW 372
Cdd:PRK06620 73 --IKDIFFNE-----EILEKYNAFIIEDIENWQEPA-----LLHIFNIINEKQKYLLLTSSDKSRNF--TLPDLSSRIKS 138
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 898332789 373 GLTIAIEPPELETRVAILMRKAAENRIHLPNEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREAL 447
Cdd:PRK06620 139 VLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENINYFALISKRKITISLVKEVL 213
|
|
| PRK07952 |
PRK07952 |
DNA replication protein DnaC; Validated |
209-321 |
4.37e-04 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 181180 [Multi-domain] Cd Length: 244 Bit Score: 42.06 E-value: 4.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 209 AMK-----HKSNINPTYQ---FDNF-VEGKSNQLARAAATQVANNPGGSYNPLFIYGGTGLGKTHLLHAVGNGIVANNGD 279
Cdd:PRK07952 50 AMKmqrtfNRSGIRPLHQncsFENYrVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKS 129
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 898332789 280 AKIVYmhserfVQDMVKALQ------NNAIEDFKRFYRSVDALLIDDI 321
Cdd:PRK07952 130 VLIIT------VADIMSAMKdtfsnsETSEEQLLNDLSNVDLLVIDEI 171
|
|
| PRK06921 |
PRK06921 |
hypothetical protein; Provisional |
214-369 |
6.18e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 180750 [Multi-domain] Cd Length: 266 Bit Score: 41.69 E-value: 6.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 214 SNINPTYQ---FDNFV-EGKSNQLARA---AATQVANNP---GGSYNPLFIYGGTGLGKTHLLHAVGNGIVANNGDAKIV 283
Cdd:PRK06921 72 SEITEAFRkltFKNFKtEGKPQAIKDAyecAVEYVKDFEkiqESRKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLY 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 284 YMHSERFvqDMVKALQNNAIEDFKRFyRSVDALLIDDIQFFANKERSQEEF-----FHTFNALLEGNQQIILTSDRYPKE 358
Cdd:PRK06921 152 FPFVEGF--GDLKDDFDLLEAKLNRM-KKVEVLFIDDLFKPVNGKPRATEWqieqmYSVLNYRYLNHKPILISSELTIDE 228
|
170
....*....|.
gi 898332789 359 IDGVEDRLKSR 369
Cdd:PRK06921 229 LLDIDEALGSR 239
|
|
| PRK09087 |
PRK09087 |
hypothetical protein; Validated |
206-428 |
1.11e-03 |
|
hypothetical protein; Validated
Pssm-ID: 169652 [Multi-domain] Cd Length: 226 Bit Score: 40.81 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 206 IPEAMKHksniNPTYQFDNFVEGKSNqlaRAAATQVANNPGGSYNPLFIYGGTGLGKTHLlhavgNGIVANNGDAkiVYM 285
Cdd:PRK09087 8 LPLNFSH----DPAYGRDDLLVTESN---RAAVSLVDHWPNWPSPVVVLAGPVGSGKTHL-----ASIWREKSDA--LLI 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 286 HSERFVQDMVKALQNNA--IEDfkrfyrsVDALLIDDiqffankersqEEFFHTFNALLEGNQQIILTSDRYPKEIDGVE 363
Cdd:PRK09087 74 HPNEIGSDAANAAAEGPvlIED-------IDAGGFDE-----------TGLFHLINSVRQAGTSLLMTSRLWPSSWNVKL 135
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 898332789 364 DRLKSRFGWGLTIAIEPPELETRVAILMRKAAENRIHLPNEVAFFIAKRLRsnvRELEgALNRVI 428
Cdd:PRK09087 136 PDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRME---RSLF-AAQTIV 196
|
|
| CDC6 |
COG1474 |
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair]; |
217-394 |
2.36e-03 |
|
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
Pssm-ID: 441083 [Multi-domain] Cd Length: 389 Bit Score: 40.60 E-value: 2.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 217 NPTYQFDNFV--EGKSNQLARA--AATQvannpGGSYNPLFIYGGTGLGKTHLLHAVGNGIVA----NNGDAKIVY---- 284
Cdd:COG1474 20 SPDYVPDRLPhrEEEIEELASAlrPALR-----GERPSNVLIYGPTGTGKTAVAKYVLEELEEeaeeRGVDVRVVYvncr 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 285 -MHSE-RFVQDMVKALQNN---------AIEDFKRFYRSVDA----LLI--DDIQFFANKERSQE-EFFHTFNALLEGNQ 346
Cdd:COG1474 95 qASTRyRVLSRILEELGSGedipstglsTDELFDRLYEALDErdgvLVVvlDEIDYLVDDEGDDLlYQLLRANEELEGAR 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 898332789 347 -QIILTSdRYPKEIDGVEDRLKSRFGwGLTIAIEP---PELetrVAILMRKA 394
Cdd:COG1474 175 vGVIGIS-NDLEFLENLDPRVKSSLG-EEEIVFPPydaDEL---RDILEDRA 221
|
|
| PRK12377 |
PRK12377 |
putative replication protein; Provisional |
208-321 |
8.86e-03 |
|
putative replication protein; Provisional
Pssm-ID: 183482 [Multi-domain] Cd Length: 248 Bit Score: 38.28 E-value: 8.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898332789 208 EAMKHKSNINPTYQ---FDNF-VEGKSNQLARAAATQVANNPGGSYNPLFIYGGTGLGKTHLLHAVGNGIVANNGDAKIV 283
Cdd:PRK12377 56 EKILNRSGIQPLHRkcsFANYqVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVV 135
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 898332789 284 YmhserfVQDMVKALQN-----NAIEDFKRFYRSVDALLIDDI 321
Cdd:PRK12377 136 T------VPDVMSRLHEsydngQSGEKFLQELCKVDLLVLDEI 172
|
|
| |
