|
Name |
Accession |
Description |
Interval |
E-value |
| PulE |
COG2804 |
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ... |
1-537 |
2.28e-169 |
|
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442055 [Multi-domain] Cd Length: 561 Bit Score: 491.25 E-value: 2.28e-169
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 1 MVERGLLTPVQLLYAEQKHTVEPLPLSRLLIQNGLAEERVVVATLAELQGIEFVAGDVLPeADPQVLAMFNRELCLTHNF 80
Cdd:COG2804 13 LVEAGLISEEQLLAALAEQKKTGKPLGELLVELGLVTEELLAEALAEQLGLPFVDLDELE-IDPEVLELLPEELARRHRV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 81 LPLRRQDGELQVLLgeAVPARVAAL--VLQRTSLRCRFMQAEFSLVTRLIrHSYYFAQNPLESL---LAREVRRLSDDPD 155
Cdd:COG2804 92 LPLRLEGGTLTVAM--ADPLDLEALdeLRRLTGRPVEPVVATESDIERAL-DRLYGSESSIEELleeLAEDLTSEEEDLE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 156 HAFSPD------KVLDYLLHLAVRERTTDIHITAEASSLHVLFRVDGVLRPMMALPPSLQ-RLLGYIKLTAEMDISDQRR 228
Cdd:COG2804 169 DLLEEAddapvvRLVNAILEDAIKEGASDIHIEPYEKRLRVRFRIDGVLREVLRLPKSLApALVSRIKIMANLDIAERRL 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 229 PQDGSFRAHILDAALTIRVSTIVTEHGERMVMRLLPEHNNLSGLADLGFFAEDVERLERLFAKPNGLVLITGPTGSGKSS 308
Cdd:COG2804 249 PQDGRIKLRLGGREIDLRVSTLPTVYGEKVVLRILDKSAALLDLEQLGFSPDQLERLRRLIRRPHGIILVTGPTGSGKTT 328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 309 SLHAALRMQSLIERNVLTVEDPLEYRVPGAGQTEVNRRAGYDFTTALRHFLRHDPDVILLGEMRDaetaqaaveaaaT-- 386
Cdd:COG2804 329 TLYAALNELNTPERNIITVEDPVEYQLPGINQVQVNPKIGLTFASALRSILRQDPDVIMVGEIRD------------Let 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 387 ----------GHLVLSTLHVTSVFGVVPRLQPLGLDSQSIAENLLVVVNQRLVRQNCPFCAAEVAFTATERAWLGVDEHA 456
Cdd:COG2804 397 aeiavqaaltGHLVLSTLHTNDAPSAITRLLDMGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEPDPEELERLGLPPEE 476
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 457 TG----RRGAGCGRCRQTGYLGRLPAYEILEIDETLANAIADTAGREAIRSLAHARGFRGMAELARERVRRGQTTAEEVL 532
Cdd:COG2804 477 LApltfYRGVGCEHCNGTGYKGRTGIYELLVIDDELRELIAEGASAAELREAARKEGMRTLREDGLEKVLQGITTLEEVL 556
|
....*
gi 913753455 533 RVVGD 537
Cdd:COG2804 557 RVTGE 561
|
|
| type_II_gspE |
TIGR02533 |
type II secretion system protein E; This family describes GspE, the E protein of the type II ... |
78-534 |
7.34e-110 |
|
type II secretion system protein E; This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 131585 [Multi-domain] Cd Length: 486 Bit Score: 336.27 E-value: 7.34e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 78 HNFLPLRRQDGELQVLLGEavPARVAALVLQR--TSLRCRFMQAEFSLVTRLIRHSYYFAQNPLESLL------AREVRR 149
Cdd:TIGR02533 12 SRVLPLSEHDGTLVVAVSD--PLDLAALDEVRrlFGAPVQLIIATASEIDDAINSVYARTGSAAAQIVeeiegeDDLSAL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 150 LSDDPDHAFSPD--------KVLDYLLHLAVRERTTDIHITAEASSLHVLFRVDGVLRPMMALPPSLQRLL-GYIKLTAE 220
Cdd:TIGR02533 90 ELDEPKIEDLLDleddapviRLVNSLLSRAVKERASDIHIEPFEKALVVRFRVDGVLRDVLSPPKKLHAALvSRVKIMAK 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 221 MDISDQRRPQDGSFRAHILDAALTIRVSTIVTEHGERMVMRLLPEHNNLSGLADLGFFAEDVERLERLFAKPNGLVLITG 300
Cdd:TIGR02533 170 LNIAEKRLPQDGRISLRVGGRDIDIRVSTVPTSHGERVVMRLLDKTAVRLDLETLGMSPELLSRFERLIRRPHGIILVTG 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 301 PTGSGKSSSLHAALRMQSLIERNVLTVEDPLEYRVPGAGQTEVNRRAGYDFTTALRHFLRHDPDVILLGEMRDAETAQAA 380
Cdd:TIGR02533 250 PTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRDLETAQIA 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 381 VEAAATGHLVLSTLHVTSVFGVVPRLQPLGLDSQSIAENLLVVVNQRLVRQNCPFCAAEVAFTATERAWLGVDEHATGR- 459
Cdd:TIGR02533 330 IQASLTGHLVLSTLHTNDAAGAVTRLIDMGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEATPEEIALFGISPEGPINl 409
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 913753455 460 -RGAGCGRCRQTGYLGRLPAYEILEIDETLANAIADTAGREAIRSLAHARGFRGMAELARERVRRGQTTAEEVLRV 534
Cdd:TIGR02533 410 yRPVGCPHCNHTGYLGRTGIYELLIVDDDLRSLIHSRADEGEIKEIARAAGMRTLRDDGLRKVLAGITTIEEVLRV 485
|
|
| PRK10436 |
PRK10436 |
hypothetical protein; Provisional |
164-537 |
4.17e-82 |
|
hypothetical protein; Provisional
Pssm-ID: 236694 Cd Length: 462 Bit Score: 263.33 E-value: 4.17e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 164 LDYLLHLAVRERTTDIHITAEASSLHVLFRVDGVLRPMMALPPSL-QRLLGYIKLTAEMDISDQRRPQDGSFRAHILDAA 242
Cdd:PRK10436 88 INQTLQSALQKRASDIHFEPAQNHYRIRLRIDGVLHPLPDPSPELgAALTARLKVLGNLDIAERRLPQDGQFTVELAGNA 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 243 LTIRVSTIVTEHGERMVMRLLPEHNNLSGLADLGFFAEDVERLERLFAKPNGLVLITGPTGSGKSSSLHAALRMQSLIER 322
Cdd:PRK10436 168 YSFRIATLPCRGGEKVVLRLLQQVQQALDLETLGMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYSALQTLNTAQI 247
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 323 NVLTVEDPLEYRVPGAGQTEVNRRAGYDFTTALRHFLRHDPDVILLGEMRDAETAQAAVEAAATGHLVLSTLHVTSVFGV 402
Cdd:PRK10436 248 NICSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAEIAIKAAQTGHLVLSTLHTNSTSET 327
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 403 VPRLQPLGLDSQSIAENLLVVVNQRLVRQNCPFC--AAEVAFTATERAWLGVDEHAtgrRGAGCGRCrQTGYLGRLPAYE 480
Cdd:PRK10436 328 LVRLQQMGIARWMLASALKLVIAQRLVRKLCPHCrqQASEPIHLPPNIWPGPLPHW---QAVGCEHC-YHGYYGRTALFE 403
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 913753455 481 ILEIDETLANAIADTAGREAIRSLAHARGFRGMAELARERVRRGQTTAEEVLRVVGD 537
Cdd:PRK10436 404 VLPITPVLQQAIASNASPEELETHARQQGMTTLFENGLLAVEQGLTTLEELYRVLGM 460
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
165-429 |
2.78e-73 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 233.88 E-value: 2.78e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 165 DYLLHLAVRERTTDIHITAEASSLHVLFRVDGVLRPMMALPPSL-QRLLGYIKLTAEMDISDQRRPQDGSFRAHILDAAL 243
Cdd:NF041000 1 EELIEEAIELRASDIHFLPREDGYQIKFRIGGGLIPYRELSLEEgQRLISYFKFLAGMDIGEKRRPQSGAFTYELNEQQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 244 TIRVSTIVTEHG-ERMVMRLLPEHNNLsgLADLgFFAEDVERLERLFAKPNGLVLITGPTGSGKSSSLHAALRMQSLiER 322
Cdd:NF041000 81 SLRLSTVGDFLGrESLVIRLLYQLEQI--KPQL-FFPEQFQLLKQLLQRRSGLILFSGPTGSGKTTTMYSLARKLAL-NK 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 323 NVLTVEDPLEYRVPGAGQTEVNRRAGYDFTTALRHFLRHDPDVILLGEMRDAETAQAAVEAAATGHLVLSTLHVTSVFGV 402
Cdd:NF041000 157 QVITIEDPVEIKEPNFLQLQVNEKAGMTYDTLLKAALRHRPDILIIGEIRDAETAKAAIRAALTGHLVLSTVHAKSAAGV 236
|
250 260
....*....|....*....|....*..
gi 913753455 403 VPRLQPLGLDSQSIAENLLVVVNQRLV 429
Cdd:NF041000 237 IYRLLELGISKEELEQTLIGISYQRLI 263
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
171-431 |
3.97e-71 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 228.32 E-value: 3.97e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 171 AVRERTTDIHITAEASSLHVLFRVDGVLRPMMALPPS-LQRLLGYIKLTAEMDISDQRRPQDGSFRAHILDAALTIRVST 249
Cdd:pfam00437 7 ALDEGASDIHVEPPERIVWIRFRVDGVLREIPFPDADaLARLISRIKVMARLDISERRPPQDGRLPLRIGGKGVRVRVST 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 250 IVTEHGERMVMRLLPEHNNLSGLADLGFFAEDVERLERLFAKPNGLVLITGPTGSGKSSSLHAALRMQSLIERNVLTVED 329
Cdd:pfam00437 87 LPTAGGEKLVIRLLDPSNVALSLDELGMTGAQDEALLEFLRQPRGNILVTGPTGSGKTTTLYAALGELNTRDENIVTVED 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 330 PLEYRVPGAGQTEVNRRAGYDFTTALRHFLRHDPDVILLGEMRDAETAQAAVEAAATGHLVLSTLHVTSVFGVVPRLQPL 409
Cdd:pfam00437 167 PVEIQLEGINQVQLNARAGVTFADLLRAILRQDPDRIMVGEIRDLETAEIALQAANTGHLVLSTLHTNSAAGALTRLQDM 246
|
250 260
....*....|....*....|..
gi 913753455 410 GLDSQSIAENLLVVVNQRLVRQ 431
Cdd:pfam00437 247 GVPPFELASSLLLVIAQRLVRK 268
|
|
| PulE-GspE-like |
cd01129 |
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ... |
283-431 |
7.35e-59 |
|
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.
Pssm-ID: 410873 [Multi-domain] Cd Length: 159 Bit Score: 192.32 E-value: 7.35e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 283 ERLERLFAKPNGLVLITGPTGSGKSSSLHAALRMQSLIERNVLTVEDPLEYRVPGAGQTEVNRRAGYDFTTALRHFLRHD 362
Cdd:cd01129 1 ARLRRLIKRPHGLILVTGPTGSGKTTTLYAMLRELNGPERNIITIEDPVEYQIPGINQSQVNEKIGLTFADALRAILRQD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 913753455 363 PDVILLGEMRDAETAQAAVEAAATGHLVLSTLHVTSVFGVVPRLQPLGLDSQSIAENLLVVVNQRLVRQ 431
Cdd:cd01129 81 PDIIMVGEIRDAETAEIAIRAALTGHLVLSTLHTNDALGAITRLLDMGIEPFLLASALRGVIAQRLVGR 149
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PulE |
COG2804 |
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ... |
1-537 |
2.28e-169 |
|
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442055 [Multi-domain] Cd Length: 561 Bit Score: 491.25 E-value: 2.28e-169
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 1 MVERGLLTPVQLLYAEQKHTVEPLPLSRLLIQNGLAEERVVVATLAELQGIEFVAGDVLPeADPQVLAMFNRELCLTHNF 80
Cdd:COG2804 13 LVEAGLISEEQLLAALAEQKKTGKPLGELLVELGLVTEELLAEALAEQLGLPFVDLDELE-IDPEVLELLPEELARRHRV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 81 LPLRRQDGELQVLLgeAVPARVAAL--VLQRTSLRCRFMQAEFSLVTRLIrHSYYFAQNPLESL---LAREVRRLSDDPD 155
Cdd:COG2804 92 LPLRLEGGTLTVAM--ADPLDLEALdeLRRLTGRPVEPVVATESDIERAL-DRLYGSESSIEELleeLAEDLTSEEEDLE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 156 HAFSPD------KVLDYLLHLAVRERTTDIHITAEASSLHVLFRVDGVLRPMMALPPSLQ-RLLGYIKLTAEMDISDQRR 228
Cdd:COG2804 169 DLLEEAddapvvRLVNAILEDAIKEGASDIHIEPYEKRLRVRFRIDGVLREVLRLPKSLApALVSRIKIMANLDIAERRL 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 229 PQDGSFRAHILDAALTIRVSTIVTEHGERMVMRLLPEHNNLSGLADLGFFAEDVERLERLFAKPNGLVLITGPTGSGKSS 308
Cdd:COG2804 249 PQDGRIKLRLGGREIDLRVSTLPTVYGEKVVLRILDKSAALLDLEQLGFSPDQLERLRRLIRRPHGIILVTGPTGSGKTT 328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 309 SLHAALRMQSLIERNVLTVEDPLEYRVPGAGQTEVNRRAGYDFTTALRHFLRHDPDVILLGEMRDaetaqaaveaaaT-- 386
Cdd:COG2804 329 TLYAALNELNTPERNIITVEDPVEYQLPGINQVQVNPKIGLTFASALRSILRQDPDVIMVGEIRD------------Let 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 387 ----------GHLVLSTLHVTSVFGVVPRLQPLGLDSQSIAENLLVVVNQRLVRQNCPFCAAEVAFTATERAWLGVDEHA 456
Cdd:COG2804 397 aeiavqaaltGHLVLSTLHTNDAPSAITRLLDMGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEPDPEELERLGLPPEE 476
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 457 TG----RRGAGCGRCRQTGYLGRLPAYEILEIDETLANAIADTAGREAIRSLAHARGFRGMAELARERVRRGQTTAEEVL 532
Cdd:COG2804 477 LApltfYRGVGCEHCNGTGYKGRTGIYELLVIDDELRELIAEGASAAELREAARKEGMRTLREDGLEKVLQGITTLEEVL 556
|
....*
gi 913753455 533 RVVGD 537
Cdd:COG2804 557 RVTGE 561
|
|
| type_II_gspE |
TIGR02533 |
type II secretion system protein E; This family describes GspE, the E protein of the type II ... |
78-534 |
7.34e-110 |
|
type II secretion system protein E; This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 131585 [Multi-domain] Cd Length: 486 Bit Score: 336.27 E-value: 7.34e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 78 HNFLPLRRQDGELQVLLGEavPARVAALVLQR--TSLRCRFMQAEFSLVTRLIRHSYYFAQNPLESLL------AREVRR 149
Cdd:TIGR02533 12 SRVLPLSEHDGTLVVAVSD--PLDLAALDEVRrlFGAPVQLIIATASEIDDAINSVYARTGSAAAQIVeeiegeDDLSAL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 150 LSDDPDHAFSPD--------KVLDYLLHLAVRERTTDIHITAEASSLHVLFRVDGVLRPMMALPPSLQRLL-GYIKLTAE 220
Cdd:TIGR02533 90 ELDEPKIEDLLDleddapviRLVNSLLSRAVKERASDIHIEPFEKALVVRFRVDGVLRDVLSPPKKLHAALvSRVKIMAK 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 221 MDISDQRRPQDGSFRAHILDAALTIRVSTIVTEHGERMVMRLLPEHNNLSGLADLGFFAEDVERLERLFAKPNGLVLITG 300
Cdd:TIGR02533 170 LNIAEKRLPQDGRISLRVGGRDIDIRVSTVPTSHGERVVMRLLDKTAVRLDLETLGMSPELLSRFERLIRRPHGIILVTG 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 301 PTGSGKSSSLHAALRMQSLIERNVLTVEDPLEYRVPGAGQTEVNRRAGYDFTTALRHFLRHDPDVILLGEMRDAETAQAA 380
Cdd:TIGR02533 250 PTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRDLETAQIA 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 381 VEAAATGHLVLSTLHVTSVFGVVPRLQPLGLDSQSIAENLLVVVNQRLVRQNCPFCAAEVAFTATERAWLGVDEHATGR- 459
Cdd:TIGR02533 330 IQASLTGHLVLSTLHTNDAAGAVTRLIDMGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEATPEEIALFGISPEGPINl 409
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 913753455 460 -RGAGCGRCRQTGYLGRLPAYEILEIDETLANAIADTAGREAIRSLAHARGFRGMAELARERVRRGQTTAEEVLRV 534
Cdd:TIGR02533 410 yRPVGCPHCNHTGYLGRTGIYELLIVDDDLRSLIHSRADEGEIKEIARAAGMRTLRDDGLRKVLAGITTIEEVLRV 485
|
|
| PRK10436 |
PRK10436 |
hypothetical protein; Provisional |
164-537 |
4.17e-82 |
|
hypothetical protein; Provisional
Pssm-ID: 236694 Cd Length: 462 Bit Score: 263.33 E-value: 4.17e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 164 LDYLLHLAVRERTTDIHITAEASSLHVLFRVDGVLRPMMALPPSL-QRLLGYIKLTAEMDISDQRRPQDGSFRAHILDAA 242
Cdd:PRK10436 88 INQTLQSALQKRASDIHFEPAQNHYRIRLRIDGVLHPLPDPSPELgAALTARLKVLGNLDIAERRLPQDGQFTVELAGNA 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 243 LTIRVSTIVTEHGERMVMRLLPEHNNLSGLADLGFFAEDVERLERLFAKPNGLVLITGPTGSGKSSSLHAALRMQSLIER 322
Cdd:PRK10436 168 YSFRIATLPCRGGEKVVLRLLQQVQQALDLETLGMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYSALQTLNTAQI 247
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 323 NVLTVEDPLEYRVPGAGQTEVNRRAGYDFTTALRHFLRHDPDVILLGEMRDAETAQAAVEAAATGHLVLSTLHVTSVFGV 402
Cdd:PRK10436 248 NICSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAEIAIKAAQTGHLVLSTLHTNSTSET 327
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 403 VPRLQPLGLDSQSIAENLLVVVNQRLVRQNCPFC--AAEVAFTATERAWLGVDEHAtgrRGAGCGRCrQTGYLGRLPAYE 480
Cdd:PRK10436 328 LVRLQQMGIARWMLASALKLVIAQRLVRKLCPHCrqQASEPIHLPPNIWPGPLPHW---QAVGCEHC-YHGYYGRTALFE 403
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 913753455 481 ILEIDETLANAIADTAGREAIRSLAHARGFRGMAELARERVRRGQTTAEEVLRVVGD 537
Cdd:PRK10436 404 VLPITPVLQQAIASNASPEELETHARQQGMTTLFENGLLAVEQGLTTLEELYRVLGM 460
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
165-429 |
2.78e-73 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 233.88 E-value: 2.78e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 165 DYLLHLAVRERTTDIHITAEASSLHVLFRVDGVLRPMMALPPSL-QRLLGYIKLTAEMDISDQRRPQDGSFRAHILDAAL 243
Cdd:NF041000 1 EELIEEAIELRASDIHFLPREDGYQIKFRIGGGLIPYRELSLEEgQRLISYFKFLAGMDIGEKRRPQSGAFTYELNEQQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 244 TIRVSTIVTEHG-ERMVMRLLPEHNNLsgLADLgFFAEDVERLERLFAKPNGLVLITGPTGSGKSSSLHAALRMQSLiER 322
Cdd:NF041000 81 SLRLSTVGDFLGrESLVIRLLYQLEQI--KPQL-FFPEQFQLLKQLLQRRSGLILFSGPTGSGKTTTMYSLARKLAL-NK 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 323 NVLTVEDPLEYRVPGAGQTEVNRRAGYDFTTALRHFLRHDPDVILLGEMRDAETAQAAVEAAATGHLVLSTLHVTSVFGV 402
Cdd:NF041000 157 QVITIEDPVEIKEPNFLQLQVNEKAGMTYDTLLKAALRHRPDILIIGEIRDAETAKAAIRAALTGHLVLSTVHAKSAAGV 236
|
250 260
....*....|....*....|....*..
gi 913753455 403 VPRLQPLGLDSQSIAENLLVVVNQRLV 429
Cdd:NF041000 237 IYRLLELGISKEELEQTLIGISYQRLI 263
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
171-431 |
3.97e-71 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 228.32 E-value: 3.97e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 171 AVRERTTDIHITAEASSLHVLFRVDGVLRPMMALPPS-LQRLLGYIKLTAEMDISDQRRPQDGSFRAHILDAALTIRVST 249
Cdd:pfam00437 7 ALDEGASDIHVEPPERIVWIRFRVDGVLREIPFPDADaLARLISRIKVMARLDISERRPPQDGRLPLRIGGKGVRVRVST 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 250 IVTEHGERMVMRLLPEHNNLSGLADLGFFAEDVERLERLFAKPNGLVLITGPTGSGKSSSLHAALRMQSLIERNVLTVED 329
Cdd:pfam00437 87 LPTAGGEKLVIRLLDPSNVALSLDELGMTGAQDEALLEFLRQPRGNILVTGPTGSGKTTTLYAALGELNTRDENIVTVED 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 330 PLEYRVPGAGQTEVNRRAGYDFTTALRHFLRHDPDVILLGEMRDAETAQAAVEAAATGHLVLSTLHVTSVFGVVPRLQPL 409
Cdd:pfam00437 167 PVEIQLEGINQVQLNARAGVTFADLLRAILRQDPDRIMVGEIRDLETAEIALQAANTGHLVLSTLHTNSAAGALTRLQDM 246
|
250 260
....*....|....*....|..
gi 913753455 410 GLDSQSIAENLLVVVNQRLVRQ 431
Cdd:pfam00437 247 GVPPFELASSLLLVIAQRLVRK 268
|
|
| PulE-GspE-like |
cd01129 |
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ... |
283-431 |
7.35e-59 |
|
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.
Pssm-ID: 410873 [Multi-domain] Cd Length: 159 Bit Score: 192.32 E-value: 7.35e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 283 ERLERLFAKPNGLVLITGPTGSGKSSSLHAALRMQSLIERNVLTVEDPLEYRVPGAGQTEVNRRAGYDFTTALRHFLRHD 362
Cdd:cd01129 1 ARLRRLIKRPHGLILVTGPTGSGKTTTLYAMLRELNGPERNIITIEDPVEYQIPGINQSQVNEKIGLTFADALRAILRQD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 913753455 363 PDVILLGEMRDAETAQAAVEAAATGHLVLSTLHVTSVFGVVPRLQPLGLDSQSIAENLLVVVNQRLVRQ 431
Cdd:cd01129 81 PDIIMVGEIRDAETAEIAIRAALTGHLVLSTLHTNDALGAITRLLDMGIEPFLLASALRGVIAQRLVGR 149
|
|
| PilT |
COG2805 |
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular ... |
164-533 |
1.79e-42 |
|
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular structures];
Pssm-ID: 442056 Cd Length: 342 Bit Score: 154.86 E-value: 1.79e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 164 LDYLLHLAVRERTTDIHITAeasSLHVLFRVDGVLRPM--MALPPS-LQRLLGYIkltaemdISDQRRPQdgsF-RAHIL 239
Cdd:COG2805 5 LDELLKLAVEQGASDLHLTV---GSPPMLRIDGELVPLddPPLTPEdLEALLKEI-------LTEEQRER---LeEEGEL 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 240 DAALTI------RVSTIVTEHGERMVMRLLPEHnnLSGLADLGFfaEDVerLERLFAKPNGLVLITGPTGSGKSSSLhAA 313
Cdd:COG2805 72 DFSYSLpglgrfRVNIFRQRGGVAAVLRLIPSE--IPTLEELGL--PPV--LKELAELPRGLVLVTGPTGSGKSTTL-AA 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 314 L-----RMQSlieRNVLTVEDPLEYRVPGAG----QTEVNRRAgYDFTTALRHFLRHDPDVILLGEMRDAETAQAAVEAA 384
Cdd:COG2805 145 MidyinETRA---KHIITIEDPIEFVHKHKKslinQREVGRDT-PSFANALRAALREDPDVILVGEMRDLETIEAALTAA 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 385 ATGHLVLSTLHVTSVFGVVPRLqplgLDS----------QSIAENLLVVVNQRLVRqncpfcaaevaftaterawlgvde 454
Cdd:COG2805 221 ETGHLVFATLHTNSAAQTIDRI----IDVfppeeqaqirSQLAESLRGVISQRLLP------------------------ 272
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 455 hatgRRGAGcgrcrqtgylGRLPAYEILEIDETLANAIADTAGREaIRSL---AHARGFRGMAELARERVRRGQTTAEEV 531
Cdd:COG2805 273 ----RADGG----------GRVAAREILVNTPAVRNLIREGKTHQ-IPSLiqtGKKLGMQTMDQSLAELVKEGLITEETA 337
|
..
gi 913753455 532 LR 533
Cdd:COG2805 338 LA 339
|
|
| pilT_fam |
TIGR01420 |
pilus retraction protein PilT; This model represents the PilT subfamily of proteins related to ... |
163-532 |
9.63e-39 |
|
pilus retraction protein PilT; This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. [Cell envelope, Surface structures, Cellular processes, Chemotaxis and motility]
Pssm-ID: 273613 Cd Length: 343 Bit Score: 144.77 E-value: 9.63e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 163 VLDYLLHLAVRERTTDIHITAEASslhVLFRVDGVLRPMMALP---PSLQRLLGYIKLTAEMDISDQRRPQDGSFRahiL 239
Cdd:TIGR01420 1 SLEEILREAVKLGASDIHLTAGAP---PAMRIDGDLVRIEFEPltpEDTQKLAREILSEKQREEFEENGELDFSFS---L 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 240 DAALTIRVSTIVTEHGERMVMRLLPEHnnLSGLADLGFfaedVERLERLFAKPNGLVLITGPTGSGKSSSLHAalrMQSL 319
Cdd:TIGR01420 75 PGVGRFRVNAFYQRGGVALVLRLIPSK--IPTFEELGL----PPVLRELAERPRGLILVTGPTGSGKSTTLAS---MIDY 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 320 IERN----VLTVEDPLEYRVPGAGQTEVNRRAGYD---FTTALRHFLRHDPDVILLGEMRDAETAQAAVEAAATGHLVLS 392
Cdd:TIGR01420 146 INKNkayhIITIEDPIEYVHTNKRSLINQREVGEDtlsFANALRAALREDPDVILIGEMRDLETVELALTAAETGHLVFG 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 393 TLHVTSVFGVVPRLqplgLDS----------QSIAENLLVVVNQRLVRqncpfcaaevaftaterawlgvdehatgRRGA 462
Cdd:TIGR01420 226 TLHTNSAAQTIERI----IDVfpaeeqeqirTQLAESLVAIISQRLLP----------------------------KADG 273
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 913753455 463 GcgrcrqtgylGRLPAYEILEIDETLANAIADtaGR-EAIRSLAHARGFRGM----AELArERVRRGQTTAEEVL 532
Cdd:TIGR01420 274 G----------GRVLAVEILINTPAVRNLIRE--GKtHQIKSLIQTGQQLGMqtfdQHLA-QLYKKGLITLEDAL 335
|
|
| PilT |
cd01131 |
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein ... |
285-502 |
3.86e-30 |
|
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Pssm-ID: 410875 [Multi-domain] Cd Length: 223 Bit Score: 117.64 E-value: 3.86e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 285 LERLFAKPNGLVLITGPTGSGKSSSLHAALR-MQSLIERNVLTVEDPLEYRVPGAGQTEVNRRAGYD---FTTALRHFLR 360
Cdd:cd01131 13 LKDLALKPRGLVLVTGPTGSGKSTTLAAMIDyINETRSKHIITIEDPIEFVHKHKKSLINQREVGRDtesFAAALRAALR 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 361 HDPDVILLGEMRDAETAQAAVEAAATGHLVLSTLHVTSVFGVVPR---LQPLGLDSQ---SIAENLLVVVNQRLVRqncp 434
Cdd:cd01131 93 EDPDVILVGEMRDLETIELALTAAETGHLVFSTLHTNSAAQTIDRiidVFPPEQQEQvriQLASSLRGVISQRLLP---- 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 913753455 435 fcaaevaftaterawlgvdehatgRRGAGcgrcrqtgylGRLPAYEILeidetlanaIADTAGREAIR 502
Cdd:cd01131 169 ------------------------KKDGG----------GRVAAFEIL---------INTPAIRNLIR 193
|
|
| type_II_IV_secretion_ATPases |
cd19477 |
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP ... |
285-431 |
2.62e-22 |
|
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410885 [Multi-domain] Cd Length: 168 Bit Score: 94.00 E-value: 2.62e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 285 LERLFAKPnGLVLITGPTGSGKSSSLHAAlrMQSL-IERNVLTVEDPLEYRVP---GAGQTEVNRRAgyDFTTALRHFLR 360
Cdd:cd19477 3 IKDGIAIG-KNVIVCGGTGSGKTTYIKSI--LEFIpKEERIISIEDTEEIVFKhhkNYTQLFFGGNI--TSADCLKSCLR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 361 HDPDVILLGEMRDAETAQAAVEAAATGHLVLSTLHVTSVFGVVPRLQPLGLDSQS------------IAENLLVVVNQRL 428
Cdd:cd19477 78 QRPDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLAN*SSSNSAarnikfesliegFKDLIDGIVHINH 157
|
...
gi 913753455 429 VRQ 431
Cdd:cd19477 158 HKQ 160
|
|
| DotB_TraJ |
cd19516 |
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of ... |
283-432 |
1.51e-21 |
|
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of the type IVb secretion (T4bS) system, also known as the dot/icm system, and is the main energy supplier of the secretion system. It is an ATPase, similar to the VirB11 component of the T4aS systems. This family also includes Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ encoded on the tra (transfer) operon.
Pssm-ID: 410924 [Multi-domain] Cd Length: 179 Bit Score: 92.06 E-value: 1.51e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 283 ERLERLFAKpNGLVLITGPTGSGKSSSLHAALRM---QSLIERNVLTVEDPLEYR-------VPGAGQTEVNRRAGyDFT 352
Cdd:cd19516 2 DLVEALFPR-EGLVYVAGATGSGKSTLLAAIYRYileNDPPDRKIITYEDPIEFVydgikskHSIIVQSQIPRHFK-SFA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 353 TALRHFLRHDPDVILLGEMRDAETAQAAVEAAATGHLVLSTLHVTSVFGVVPRLQPLGLDSQ------SIAENLLVVVNQ 426
Cdd:cd19516 80 KAVREALRRKPSLIGVGELRDQETISAAVEASLTGHPVYSTVHTKSVAETIRRLISLFPPEErdaaayDLLSTLRFIIVQ 159
|
....*.
gi 913753455 427 RLVRQN 432
Cdd:cd19516 160 RLVRTT 165
|
|
| PilU |
COG5008 |
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures]; |
164-430 |
2.06e-20 |
|
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures];
Pssm-ID: 444032 Cd Length: 370 Bit Score: 92.85 E-value: 2.06e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 164 LDYLLHLAVRERTTDIHITAEASslhVLFRVDGVLRPMM--ALPPSLQRLLGYIKLTAE------------MDISdqrRP 229
Cdd:COG5008 3 LEDLLKLMVEKKASDLFITAGAP---PSIKIDGKLTPLSqqPLTPEQVRELAYSIMNEEqreefertkecnFAIS---LP 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 230 QDGSFRAHIL----DAALTIRvsTIVTEhgermvmrlLPEhnnlsgLADLGFfaedVERLERLFAKPNGLVLITGPTGSG 305
Cdd:COG5008 77 GVGRFRVNAFrqrgSVGMVLR--RIETE---------IPT------LDELGL----PPVLKDLIMEKRGLVLFVGATGSG 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 306 KSSSLhAALrmqslIE-RN------VLTVEDPLEYRVPGAG----QTEVnrraGYD---FTTALRHFLRHDPDVILLGEM 371
Cdd:COG5008 136 KSTTL-AAM-----IDhRNenssghILTIEDPIEFVHKHKKsivtQREV----GVDtesYEVALKNALRQAPDVILIGEI 205
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 913753455 372 RDAETAQAAVEAAATGHLVLSTLHVTS-------VFGVVP--RLQPLGLDsqsIAENLLVVVNQRLVR 430
Cdd:COG5008 206 RDRETMEHAIAFAETGHLCLATLHANNanqaldrIINFFPeeRRPQLLMD---LSLNLRAIVSQRLVP 270
|
|
| plasmid_TraJ |
TIGR02525 |
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated ... |
158-432 |
2.28e-19 |
|
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). [Mobile and extrachromosomal element functions, Plasmid functions]
Pssm-ID: 131577 [Multi-domain] Cd Length: 372 Bit Score: 89.86 E-value: 2.28e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 158 FSPDKVLDYLLHLAvRERTTDIHITaeaSSLHVLFRVDGVLRPMMALP-PSL-----------QRLLGYIKLTAEMDISD 225
Cdd:TIGR02525 7 LTADTLRRFFVHCS-RHEVSDIHLQ---GGSPIVVERHGRQVPASSFPlDNLelerlvdevfgPEIKPTVKSGAPVDRAI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 226 Q-----------RRPQDGSFRAHILDAALTIRVSTIVtehgerMVMRLLPEhnNLSGLADLGFfaedVERLERLFAKPNG 294
Cdd:TIGR02525 83 QlrgdengryglGRGERVRFRCNFIQATIGKLETAIS------LTLRVIPS--DIPDLKQMGI----EPDLFNSLLPAAG 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 295 LVLITGPTGSGKSSSLHAALR--MQSLIERNVLTVEDPLEYRVPGAG------QTEVNRRAGyDFTTALRHFLRHDPDVI 366
Cdd:TIGR02525 151 LGLICGETGSGKSTLAASIYQhcGETYPDRKIVTYEDPIEYILGSPDdllppaQSQIGRDVD-SFANGIRLALRRAPKII 229
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 913753455 367 LLGEMRDAETAQAAVEAAATGHLVLSTLHVTSVFGVVPRLqpLGL----DSQSIAENLLVVVN----QRLVRQN 432
Cdd:TIGR02525 230 GVGEIRDLETFQAAVLAGQSGHFCLGTLHVKSPGEAISRC--LQMyppeMREAAAFDLLSILQyiivQRLLRTT 301
|
|
| VirB11 |
COG0630 |
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell ... |
296-432 |
7.32e-10 |
|
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440395 [Multi-domain] Cd Length: 462 Bit Score: 61.25 E-value: 7.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 296 VLITGPTGSGKSSSLHAALrmqSLIERN--VLTVEDPLEYRVPGA-GQTEVNRRAG------YDFTTALRHFLRHDPDVI 366
Cdd:COG0630 293 VLVAGGTASGKTTLLNALL---SFIPPDakIVTIEDTRELNLPHEnWISLVTRESFggeegdVTMFDLLKAALRQRPDYI 369
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 913753455 367 LLGEMRDAETAQAAVEAAAtGHLVLSTLHVTSVFGVVPRLQ--PLGLdSQSIAENLLVVVNQRLVRQN 432
Cdd:COG0630 370 VVGEVRGEEAYTLFQAMAT-GHGVLSTFHADSVESAINRLTspPINV-PRTLLQALDLVVFQKRVRVG 435
|
|
| T2SSE_N |
pfam05157 |
Type II secretion system (T2SS), protein E, N-terminal domain; This domain is found at the ... |
30-132 |
1.91e-08 |
|
Type II secretion system (T2SS), protein E, N-terminal domain; This domain is found at the N-terminus of members of the Type II secretion system protein E. Proteins in this subfamily are typically involved in Type 4 pilus biogenesis, though some are involved in other processes; for instance aggregation in Myxococcus xanthus. The structure of this domain is now known.
Pssm-ID: 428339 [Multi-domain] Cd Length: 108 Bit Score: 52.34 E-value: 1.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 30 LIQNGLAEERVVVATLAELQGIEFVAGDVLPeADPQVLAMFNRELCLTHNFLPLRRQDGELQVLLGEAVPARVAALVLQR 109
Cdd:pfam05157 1 LVELGLLSEEQLAQALAEQLGLPFVDLEALE-IDPELLRLLPREFARRHRVLPLREDGGTLVVAVADPLDLALLDELRFL 79
|
90 100
....*....|....*....|...
gi 913753455 110 TSLRCRFMQAEFSLVTRLIRHSY 132
Cdd:pfam05157 80 TGKRVEPVLATPSDIRRALERLY 102
|
|
| VirB11-like_ATPase |
cd01130 |
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, ... |
296-432 |
1.07e-07 |
|
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir (virulence) proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the bacterial Ti (tumor-inducing)-plasmid into plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11-related ATPases include Sulfolobus acidocaldarius FlaI, which plays key roles in archaellum (archaeal flagellum) assembly and motility functions, and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Pssm-ID: 410874 [Multi-domain] Cd Length: 177 Bit Score: 51.77 E-value: 1.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 296 VLITGPTGSGKSSSLHAALRMQSLIERnVLTVED------------PLEYRVPGAGQTEVnrragyDFTTALRHFLRHDP 363
Cdd:cd01130 15 ILISGGTGSGKTTLLNALLSFIPPDER-IVTIEDtrelqlphpnvvHLLTRPGGGEKGEV------TMADLLKAALRMRP 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 364 DVILLGEMRDaETAQAAVEAAATGHL-VLSTLHVTSVFGVVPRLQPLGLDS----------QSIAENLLVVVNQRLVRQN 432
Cdd:cd01130 88 DRIIVGEVRG-GEAYDMLQAMNTGHPgSITTIHANSAEDAIDRLATLVLEAgvnldeealrRLIASAIDVIVHVKRLGDG 166
|
|
| nfrB |
PRK11234 |
phage adsorption protein NrfB; |
1-132 |
5.82e-07 |
|
phage adsorption protein NrfB;
Pssm-ID: 236884 [Multi-domain] Cd Length: 727 Bit Score: 52.43 E-value: 5.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 1 MVERGLLTPVQLLYAEQkHTVEPLPLSRLLIQNGLAEERVVVATLAELQGIEFVagDVLPEA-DPQVLAMFNRELCLTHN 79
Cdd:PRK11234 488 LLENGVITEEQLDTALR-NRVRGLRLGQSLLMQGLISAEQLAQALAEQNGVAWE--SLDPWQiPSSLIAEMPASVALHYA 564
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 913753455 80 FLPLRRQDGELQVLLGEAV-PARVAALvLQRTSLRCRFMQAEFSLVTRLIRHSY 132
Cdd:PRK11234 565 VLPLREEGDELIVASEDGIsPVSLAAL-TRKLGRKVRYVIVPRGQVTTGLRHWY 617
|
|
| PRK13851 |
PRK13851 |
type IV secretion system protein VirB11; Provisional |
296-373 |
5.36e-06 |
|
type IV secretion system protein VirB11; Provisional
Pssm-ID: 172375 Cd Length: 344 Bit Score: 48.74 E-value: 5.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913753455 296 VLITGPTGSGK---SSSLHAALRMQsliERnVLTVEDPLEYRVPGAGQTEV---NRRAGYDFTTA---LRHFLRHDPDVI 366
Cdd:PRK13851 165 MLLCGPTGSGKttmSKTLISAIPPQ---ER-LITIEDTLELVIPHENHVRLlysKNGAGLGAVTAehlLQASLRMRPDRI 240
|
....*..
gi 913753455 367 LLGEMRD 373
Cdd:PRK13851 241 LLGEMRD 247
|
|
| |
