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Conserved domains on  [gi|913757492|ref|WP_050488820|]
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integrase core domain-containing protein [Enterobacter chengduensis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Tra5 super family cl34487
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
1-46 7.19e-10

Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];


The actual alignment was detected with superfamily member COG2801:

Pssm-ID: 442053 [Multi-domain]  Cd Length: 309  Bit Score: 55.16  E-value: 7.19e-10
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 913757492   1 MHRSLKSAVKQGNTFMTMEEQQRWFTDYREEFNHERPHEALAGATP 46
Cdd:COG2801  253 FFGTLKYELLYRRRFESLEEAREAIEEYIEFYNHERPHSSLGYLTP 298
 
Name Accession Description Interval E-value
Tra5 COG2801
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
1-46 7.19e-10

Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442053 [Multi-domain]  Cd Length: 309  Bit Score: 55.16  E-value: 7.19e-10
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 913757492   1 MHRSLKSAVKQGNTFMTMEEQQRWFTDYREEFNHERPHEALAGATP 46
Cdd:COG2801  253 FFGTLKYELLYRRRFESLEEAREAIEEYIEFYNHERPHSSLGYLTP 298
transpos_IS481 NF033577
IS481 family transposase; null
 1-50 7.07e-09

IS481 family transposase; null


Pssm-ID: 468094 [Multi-domain]  Cd Length: 283  Bit Score: 52.21  E-value: 7.07e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 913757492   1 MHRSLKSAVKQGNTFMTMEEQQRWFTDYREEFNHERPHEALAGATPGTVW 50
Cdd:NF033577 234 FHRTLKDEFAYARPYESLAELQAALDEWLHHYNHHRPHSALGGKTPAERF 283
transpos_IS3 NF033516
IS3 family transposase;
2-46 1.71e-06

IS3 family transposase;


Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 45.63  E-value: 1.71e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 913757492   2 HRSLKSAVKQGNTFMTMEEQQRWFTDYREEFNHERPHEALAGATP 46
Cdd:NF033516 321 FGTLKRECLYRRRFRTLEEARQAIEEYIEFYNHERPHSSLGYLTP 365
rve_3 pfam13683
Integrase core domain;
1-46 2.26e-05

Integrase core domain;


Pssm-ID: 433402 [Multi-domain]  Cd Length: 67  Bit Score: 39.89  E-value: 2.26e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 913757492    1 MHRSLKSAVKQGNTFMTMEEQQRWFTDYREEFNHERPHEALAGATP 46
Cdd:pfam13683  22 FNGTLRDECLNEHLFSSLAEARALLAAWREDYNTERPHSSLGYRTP 67
 
Name Accession Description Interval E-value
Tra5 COG2801
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
1-46 7.19e-10

Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442053 [Multi-domain]  Cd Length: 309  Bit Score: 55.16  E-value: 7.19e-10
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 913757492   1 MHRSLKSAVKQGNTFMTMEEQQRWFTDYREEFNHERPHEALAGATP 46
Cdd:COG2801  253 FFGTLKYELLYRRRFESLEEAREAIEEYIEFYNHERPHSSLGYLTP 298
transpos_IS481 NF033577
IS481 family transposase; null
 1-50 7.07e-09

IS481 family transposase; null


Pssm-ID: 468094 [Multi-domain]  Cd Length: 283  Bit Score: 52.21  E-value: 7.07e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 913757492   1 MHRSLKSAVKQGNTFMTMEEQQRWFTDYREEFNHERPHEALAGATPGTVW 50
Cdd:NF033577 234 FHRTLKDEFAYARPYESLAELQAALDEWLHHYNHHRPHSALGGKTPAERF 283
transpos_IS3 NF033516
IS3 family transposase;
2-46 1.71e-06

IS3 family transposase;


Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 45.63  E-value: 1.71e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 913757492   2 HRSLKSAVKQGNTFMTMEEQQRWFTDYREEFNHERPHEALAGATP 46
Cdd:NF033516 321 FGTLKRECLYRRRFRTLEEARQAIEEYIEFYNHERPHSSLGYLTP 365
rve_3 pfam13683
Integrase core domain;
1-46 2.26e-05

Integrase core domain;


Pssm-ID: 433402 [Multi-domain]  Cd Length: 67  Bit Score: 39.89  E-value: 2.26e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 913757492    1 MHRSLKSAVKQGNTFMTMEEQQRWFTDYREEFNHERPHEALAGATP 46
Cdd:pfam13683  22 FNGTLRDECLNEHLFSSLAEARALLAAWREDYNTERPHSSLGYRTP 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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