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Conserved domains on  [gi|914606662|ref|WP_050601089|]
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MULTISPECIES: F0F1 ATP synthase subunit C [Erythrobacteraceae]

Protein Classification

ATP synthase subunit c family protein( domain architecture ID 210)

ATP synthase subunit c family protein is essential for facilitating proton translocation across the membrane as part of the Fo proton channel, and this proton movement drives the rotation of the c-ring, which is coupled to the F1 catalytic core, converting the proton gradient into mechanical energy that powers ATP production from ADP and inorganic phosphate

Gene Ontology:  GO:0045263|GO:0046933|GO:0008289
PubMed:  26621635

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK13469 super family cl00466
F0F1 ATP synthase subunit C; Provisional
 1-74 2.14e-11

F0F1 ATP synthase subunit C; Provisional


The actual alignment was detected with superfamily member PRK07558:

Pssm-ID: 469780  Cd Length: 74  Bit Score: 53.43  E-value: 2.14e-11
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 914606662  1 MEAEAAKLLGAGLAAVGAGLASLGVGNVFAKYLEGALRNPGAADGQQGRLFIGFAAAELLGLLAFVVAMILIFV 74
Cdd:PRK07558  1 MDAEALKFIGAGLACIGMAGAALGVGNIFGNYLSGALRNPSAADSQFGYLLIGAALAEALGIFSFLIALLLLFA 74
 
Name Accession Description Interval E-value
PRK07558 PRK07558
F0F1 ATP synthase subunit C; Validated
 1-74 2.14e-11

F0F1 ATP synthase subunit C; Validated


Pssm-ID: 181027  Cd Length: 74  Bit Score: 53.43  E-value: 2.14e-11
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 914606662  1 MEAEAAKLLGAGLAAVGAGLASLGVGNVFAKYLEGALRNPGAADGQQGRLFIGFAAAELLGLLAFVVAMILIFV 74
Cdd:PRK07558  1 MDAEALKFIGAGLACIGMAGAALGVGNIFGNYLSGALRNPSAADSQFGYLLIGAALAEALGIFSFLIALLLLFA 74
AtpE COG0636
FoF1-type ATP synthase, membrane subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy ...
 1-75 1.83e-05

FoF1-type ATP synthase, membrane subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440401  Cd Length: 75  Bit Score: 38.57  E-value: 1.83e-05
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 914606662  1 MEAEAAKLLGAGLAAVGAGLASLGVGNVFAKYLEGALRNPGAADGQQGRLFIGFAAAELLGLLAFVVAMILIFVA 75
Cdd:COG0636   1 MEAAASAIGAGLAIGLAAIGAGIGIGLAGGKALEAIARQPEAAGKLQTTMFIGAALIEALAIYALVIALILLFAN 75
ATP-synt_Fo_c_ATP5G3 cd18182
ATP synthase F(0) complex subunit C3 (ATP5G3) and similar proteins; ATP5G3 (also called ATP ...
 13-71 8.09e-03

ATP synthase F(0) complex subunit C3 (ATP5G3) and similar proteins; ATP5G3 (also called ATP synthase lipid-binding protein, ATP synthase proteolipid P3, ATP synthase proton-transporting mitochondrial F(o) complex subunit C3, ATPase protein 9, or ATPase subunit c) transports protons across the inner mitochondrial membrane to the F1-ATPase protruding on the matrix side, resulting in the generation of ATP.


Pssm-ID: 349422  Cd Length: 65  Bit Score: 31.33  E-value: 8.09e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 914606662 13 LAAVGAGLASLGVGNVFAKYLEGALRNPGAADGQQGRLFIGFAAAELLGLLAFVVAMIL 71
Cdd:cd18182   7 LATIGLAGAGIGIGNVFGSLINGVARNPSAKQQLFTYAILGFALTEAIGLFALMVAFLI 65
 
Name Accession Description Interval E-value
PRK07558 PRK07558
F0F1 ATP synthase subunit C; Validated
 1-74 2.14e-11

F0F1 ATP synthase subunit C; Validated


Pssm-ID: 181027  Cd Length: 74  Bit Score: 53.43  E-value: 2.14e-11
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 914606662  1 MEAEAAKLLGAGLAAVGAGLASLGVGNVFAKYLEGALRNPGAADGQQGRLFIGFAAAELLGLLAFVVAMILIFV 74
Cdd:PRK07558  1 MDAEALKFIGAGLACIGMAGAALGVGNIFGNYLSGALRNPSAADSQFGYLLIGAALAEALGIFSFLIALLLLFA 74
AtpE COG0636
FoF1-type ATP synthase, membrane subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy ...
 1-75 1.83e-05

FoF1-type ATP synthase, membrane subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440401  Cd Length: 75  Bit Score: 38.57  E-value: 1.83e-05
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 914606662  1 MEAEAAKLLGAGLAAVGAGLASLGVGNVFAKYLEGALRNPGAADGQQGRLFIGFAAAELLGLLAFVVAMILIFVA 75
Cdd:COG0636   1 MEAAASAIGAGLAIGLAAIGAGIGIGLAGGKALEAIARQPEAAGKLQTTMFIGAALIEALAIYALVIALILLFAN 75
ATP-synt_Fo_c_ATP5G3 cd18182
ATP synthase F(0) complex subunit C3 (ATP5G3) and similar proteins; ATP5G3 (also called ATP ...
 13-71 8.09e-03

ATP synthase F(0) complex subunit C3 (ATP5G3) and similar proteins; ATP5G3 (also called ATP synthase lipid-binding protein, ATP synthase proteolipid P3, ATP synthase proton-transporting mitochondrial F(o) complex subunit C3, ATPase protein 9, or ATPase subunit c) transports protons across the inner mitochondrial membrane to the F1-ATPase protruding on the matrix side, resulting in the generation of ATP.


Pssm-ID: 349422  Cd Length: 65  Bit Score: 31.33  E-value: 8.09e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 914606662 13 LAAVGAGLASLGVGNVFAKYLEGALRNPGAADGQQGRLFIGFAAAELLGLLAFVVAMIL 71
Cdd:cd18182   7 LATIGLAGAGIGIGNVFGSLINGVARNPSAKQQLFTYAILGFALTEAIGLFALMVAFLI 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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