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Conserved domains on  [gi|916252310|ref|WP_050988797|]
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DUF3943 domain-containing protein [Vibrio breoganii]

Protein Classification

DUF3943 domain-containing protein( domain architecture ID 10586680)

DUF3943 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3943 pfam13084
Domain of unknown function (DUF3943); This presumed domain is functionally uncharacterized. ...
 126-235 1.31e-47

Domain of unknown function (DUF3943); This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 110 amino acids in length.


:

Pssm-ID: 432962  Cd Length: 108  Bit Score: 154.68  E-value: 1.31e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916252310  126 GPVWDRDEHVLNYIMHPYFGGVYYTAARHAGFNEFESFAYSFTMSTfFWEYGVEAFAEVPSWQDLFVTPVFGAVVGELML 205
Cdd:pfam13084   1 GPVWDNDDFWINQFGHPYQGALYYLAARSNGYSFWESLLYAFLGST-FWEYGGEAFTEPPSINDLIVTPIGGSVLGEGLY 79

                          90       100       110
                  ....*....|....*....|....*....|
gi 916252310  206 QGEQEILaSGGRVWGSETMGGISLFFLNPV 235
Cdd:pfam13084  80 RLSRLIL-NGRTLGGSRFLGEAAAFLIDPV 108
 
Name Accession Description Interval E-value
DUF3943 pfam13084
Domain of unknown function (DUF3943); This presumed domain is functionally uncharacterized. ...
 126-235 1.31e-47

Domain of unknown function (DUF3943); This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 110 amino acids in length.


Pssm-ID: 432962  Cd Length: 108  Bit Score: 154.68  E-value: 1.31e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916252310  126 GPVWDRDEHVLNYIMHPYFGGVYYTAARHAGFNEFESFAYSFTMSTfFWEYGVEAFAEVPSWQDLFVTPVFGAVVGELML 205
Cdd:pfam13084   1 GPVWDNDDFWINQFGHPYQGALYYLAARSNGYSFWESLLYAFLGST-FWEYGGEAFTEPPSINDLIVTPIGGSVLGEGLY 79

                          90       100       110
                  ....*....|....*....|....*....|
gi 916252310  206 QGEQEILaSGGRVWGSETMGGISLFFLNPV 235
Cdd:pfam13084  80 RLSRLIL-NGRTLGGSRFLGEAAAFLIDPV 108
 
Name Accession Description Interval E-value
DUF3943 pfam13084
Domain of unknown function (DUF3943); This presumed domain is functionally uncharacterized. ...
 126-235 1.31e-47

Domain of unknown function (DUF3943); This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 110 amino acids in length.


Pssm-ID: 432962  Cd Length: 108  Bit Score: 154.68  E-value: 1.31e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916252310  126 GPVWDRDEHVLNYIMHPYFGGVYYTAARHAGFNEFESFAYSFTMSTfFWEYGVEAFAEVPSWQDLFVTPVFGAVVGELML 205
Cdd:pfam13084   1 GPVWDNDDFWINQFGHPYQGALYYLAARSNGYSFWESLLYAFLGST-FWEYGGEAFTEPPSINDLIVTPIGGSVLGEGLY 79

                          90       100       110
                  ....*....|....*....|....*....|
gi 916252310  206 QGEQEILaSGGRVWGSETMGGISLFFLNPV 235
Cdd:pfam13084  80 RLSRLIL-NGRTLGGSRFLGEAAAFLIDPV 108
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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