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Conserved domains on  [gi|916485400|ref|WP_051125906|]
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iron ABC transporter permease [Pseudovibrio sp. FO-BEG1]

Protein Classification

FecCD family ABC transporter permease( domain architecture ID 10001816)

FecCD family ABC transporter permease such as iron ABC transporter permease, which is the transmembrane subunit (TM) found in a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter involved in the import of iron and iron-containing compounds

CATH:  1.10.3470.10
Gene Ontology:  GO:0140359|GO:0042626
PubMed:  25750732|24638992
SCOP:  4002900
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 43-346 4.22e-93

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


:

Pssm-ID: 440374  Cd Length: 306  Bit Score: 280.03  E-value: 4.22e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400  43 SLGLGAVSIPLDVIINSLFDLEGPKQTY-IIWKSRLPRVLIALMAGASLAVSGVIVQAIVRNPLASPKIMGINSGAALAA 121
Cdd:COG0609    1 SLSLGAVPISLSDVLRALLGPDGDPTADlIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGAALGA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400 122 LGTIMFLPEMPVTYLPVAAALGGIVAAVIVLFAAHL-RQVSPARLALVGIAVGMVCDAGVDYLLVTAATLEISNPLVWLT 200
Cdd:COG0609   81 VLAIVLGGGLSALGLPLAAFLGALLAALLVYLLARRgGGLSPLRLVLAGVAVSALFSALTSLLLLLADPEQLRSIVFWLM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400 201 GSLWARTWAHVHSIWLPLVSLLGLTMVLSYQLDLQQLGDQTARGLGQSTNKMRLLLLGVATLLASISVGVVGVIGFIGLM 280
Cdd:COG0609  161 GSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPIGFVGLV 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 916485400 281 SPHISRSLVGGRHRVLLPTAALVGALLVVLADAVGRAIAPPIEVSAGILSAMLGAPYFIWIMSRSQ 346
Cdd:COG0609  241 VPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
 
Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 43-346 4.22e-93

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 280.03  E-value: 4.22e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400  43 SLGLGAVSIPLDVIINSLFDLEGPKQTY-IIWKSRLPRVLIALMAGASLAVSGVIVQAIVRNPLASPKIMGINSGAALAA 121
Cdd:COG0609    1 SLSLGAVPISLSDVLRALLGPDGDPTADlIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGAALGA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400 122 LGTIMFLPEMPVTYLPVAAALGGIVAAVIVLFAAHL-RQVSPARLALVGIAVGMVCDAGVDYLLVTAATLEISNPLVWLT 200
Cdd:COG0609   81 VLAIVLGGGLSALGLPLAAFLGALLAALLVYLLARRgGGLSPLRLVLAGVAVSALFSALTSLLLLLADPEQLRSIVFWLM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400 201 GSLWARTWAHVHSIWLPLVSLLGLTMVLSYQLDLQQLGDQTARGLGQSTNKMRLLLLGVATLLASISVGVVGVIGFIGLM 280
Cdd:COG0609  161 GSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPIGFVGLV 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 916485400 281 SPHISRSLVGGRHRVLLPTAALVGALLVVLADAVGRAIAPPIEVSAGILSAMLGAPYFIWIMSRSQ 346
Cdd:COG0609  241 VPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 35-344 3.07e-81

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 249.75  E-value: 3.07e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400   35 ACITASMVSLGLGAVSIPLDVIINSLFDLEGPKQTYIIWKSRLPRVLIALMAGASLAVSGVIVQAIVRNPLASPKIMGIN 114
Cdd:pfam01032   1 LLLLLILLSLFIGAVKISPSDVFSALLGGDDSLAALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADPSILGIS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400  115 SGAALAALGTIMFLPEMPVTYLPVAAALGGIVAAVIVLFAAHLRQ-VSPARLALVGIAVGMVCDAGVDYLLVTAATLEIS 193
Cdd:pfam01032  81 SGAALGAVLAILLGGSLSLFALPLAAFIGALLAALLVYFLSRGRGgASPLRLILAGIAVSALLSALTSLLLLLLNPEALQ 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400  194 NPLVWLTGSLWARTWAHVHSIWLPLVSLLGLTMVLSYQLDLQQLGDQTARGLGQSTNKMRLLLLGVATLLASISVGVVGV 273
Cdd:pfam01032 161 SILFWLMGSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAASVAVVGP 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 916485400  274 IGFIGLMSPHISRSLVGGRHRVLLPTAALVGALLVVLADAVGRAIAPPIEVSAGILSAMLGAPYFIWIMSR 344
Cdd:pfam01032 241 IGFVGLIVPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILSPYELPVGIVTALIGAPFFIYLLLR 311
fecD PRK09777
Fe(3+) dicitrate ABC transporter permease subunit FecD;
27-344 2.77e-78

Fe(3+) dicitrate ABC transporter permease subunit FecD;


Pssm-ID: 182071  Cd Length: 318  Bit Score: 242.64  E-value: 2.77e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400  27 RVQLVLFVACITASMVSLGLGAVSIPLDVIINSLFdlEGPKQTYIIWKSRLPRVLIALMAGASLAVSGVIVQAIVRNPLA 106
Cdd:PRK09777   4 ALVIFITLALAGCALLSLRMGVIPLPWRALLTDWQ--AGDEHYYVLMEYRLPRLLLALFVGAALAVSGVLVQGIVRNPLA 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400 107 SPKIMGINSGAALAALGTIMFLPEMPVTYLPVAAALGGIVAAVIVLFAAhlRQVSPARLALVGIAVGMVCDAGVDYLLVT 186
Cdd:PRK09777  82 SPDILGVNHAASLASVGALLLFPSLPVMWLPLLAFIGGMAGLILLKMLA--GTHQPMKLALTGVALSALWASLTDYLMLS 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400 187 AAtLEISNPLVWLTGSLWARTWAHVHSIWLPLVSLLGLTMVLSYQLDLQQLGDQTARGLGQSTNKMRLLLLGVATLLASI 266
Cdd:PRK09777 160 RP-QDINNALLWLTGSLWGRDWSFVKVALPWLILLLPLSLSFCRDLDLLALGDARATTLGVSVPHTQFWALLLAVALTAT 238

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 916485400 267 SVGVVGVIGFIGLMSPHISRSLVGGRHRVLLPTAALVGALLVVLADAVGRAIAPPIEVSAGILSAMLGAPYFIWIMSR 344
Cdd:PRK09777 239 GVAACGPISFIGLVVPHLMRSLVGGRHRRLLPVSALTGALLLLLADLLARIIHPPLELPAGVLTAIIGAPWFFWLLVR 316
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 80-342 5.23e-51

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 170.43  E-value: 5.23e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400  80 VLIALMAGASLAVSGVIVQAIVRNPLASPKIMGINSGAALAALGTIMFLPEMPVTYLPVAAALGGIVAAVIVLFAAHLRQ 159
Cdd:cd06550    1 LLAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLGIGLSNYALGAFAFAGALAIALLVLLLASRGG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400 160 VSPARLALVGIAVGMVCDAGVDYLLVTAaTLEISNPLVWLTGSLWARTWAHVHSIWLPLVSLLGLTMVLSYQLDLQQLGD 239
Cdd:cd06550   81 LSPSKLILIGIVLSAFFSAGVILISLLS-DDSLQDLNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLTFDE 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400 240 QTARGLGQSTNKMRLLLLGVATLLASISVGVVGVIGFIGLMSPHISRSLVGGRHRVLLPTAALVGALLVVLADAVGRAIA 319
Cdd:cd06550  160 DLAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSRTLL 239

                        250       260
                 ....*....|....*....|...
gi 916485400 320 pPIEVSAGILSAMLGAPYFIWIM 342
Cdd:cd06550  240 -PSELPVGPVTALLGAPYFLYLL 261
F420-0_ABCperm TIGR03869
proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter ...
 71-349 2.43e-44

proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.


Pssm-ID: 163581  Cd Length: 325  Bit Score: 155.01  E-value: 2.43e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400   71 IIWKSRLPRVLIALMAGASLAVSGVIVQAIVRNPLASPKIMGINSGAALAALGTIMFLPEMpvtYLPVAAALGGIVAAVI 150
Cdd:TIGR03869  48 IVWDLRLPRVLTAAAVGAGLAIAGAVMQSLTRNPLADPYLLGLSSGASLGAVAVLVLGVAV---LLPVAAFAGALLALAA 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400  151 VL-FAAHLRQVSPARLALVGIAVGMVCDAGVDYLLVTAATLE-ISNPLVWLTGSLWARTWAHVhSIWLPLVSLLGLTMVL 228
Cdd:TIGR03869 125 TLgLARTLGTLTPTRTILAGLAVSQLCAAVTSFVIFWSATGDsYREILSWLMGSLAGATWGSV-AIAGGALLVVGLVLLA 203

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400  229 SYQ-LDLQQLGDQTARGLGQSTNKMRLLLLGVATLLASISVGVVGVIGFIGLMSPHISRSLVGGRHRVLLPTAALVGALL 307
Cdd:TIGR03869 204 SGRvLDAFAFGDSSAAALGVDVERTRWLLLTLVALLTGALVSVSGAIGFVGLILPHAVRLLTGPRHRLLLPVSALAGAVF 283

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 916485400  308 VVLADAVGRAIAPPIEVSAGILSAMLGAPYFIWIMSRSQKGQ 349
Cdd:TIGR03869 284 LVWADTLARTVFAPRELPVGIITALIGAPVFAVLLYRSRSGA 325
 
Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 43-346 4.22e-93

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 280.03  E-value: 4.22e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400  43 SLGLGAVSIPLDVIINSLFDLEGPKQTY-IIWKSRLPRVLIALMAGASLAVSGVIVQAIVRNPLASPKIMGINSGAALAA 121
Cdd:COG0609    1 SLSLGAVPISLSDVLRALLGPDGDPTADlIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGAALGA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400 122 LGTIMFLPEMPVTYLPVAAALGGIVAAVIVLFAAHL-RQVSPARLALVGIAVGMVCDAGVDYLLVTAATLEISNPLVWLT 200
Cdd:COG0609   81 VLAIVLGGGLSALGLPLAAFLGALLAALLVYLLARRgGGLSPLRLVLAGVAVSALFSALTSLLLLLADPEQLRSIVFWLM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400 201 GSLWARTWAHVHSIWLPLVSLLGLTMVLSYQLDLQQLGDQTARGLGQSTNKMRLLLLGVATLLASISVGVVGVIGFIGLM 280
Cdd:COG0609  161 GSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPIGFVGLV 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 916485400 281 SPHISRSLVGGRHRVLLPTAALVGALLVVLADAVGRAIAPPIEVSAGILSAMLGAPYFIWIMSRSQ 346
Cdd:COG0609  241 VPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 35-344 3.07e-81

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 249.75  E-value: 3.07e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400   35 ACITASMVSLGLGAVSIPLDVIINSLFDLEGPKQTYIIWKSRLPRVLIALMAGASLAVSGVIVQAIVRNPLASPKIMGIN 114
Cdd:pfam01032   1 LLLLLILLSLFIGAVKISPSDVFSALLGGDDSLAALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADPSILGIS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400  115 SGAALAALGTIMFLPEMPVTYLPVAAALGGIVAAVIVLFAAHLRQ-VSPARLALVGIAVGMVCDAGVDYLLVTAATLEIS 193
Cdd:pfam01032  81 SGAALGAVLAILLGGSLSLFALPLAAFIGALLAALLVYFLSRGRGgASPLRLILAGIAVSALLSALTSLLLLLLNPEALQ 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400  194 NPLVWLTGSLWARTWAHVHSIWLPLVSLLGLTMVLSYQLDLQQLGDQTARGLGQSTNKMRLLLLGVATLLASISVGVVGV 273
Cdd:pfam01032 161 SILFWLMGSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAASVAVVGP 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 916485400  274 IGFIGLMSPHISRSLVGGRHRVLLPTAALVGALLVVLADAVGRAIAPPIEVSAGILSAMLGAPYFIWIMSR 344
Cdd:pfam01032 241 IGFVGLIVPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILSPYELPVGIVTALIGAPFFIYLLLR 311
fecD PRK09777
Fe(3+) dicitrate ABC transporter permease subunit FecD;
27-344 2.77e-78

Fe(3+) dicitrate ABC transporter permease subunit FecD;


Pssm-ID: 182071  Cd Length: 318  Bit Score: 242.64  E-value: 2.77e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400  27 RVQLVLFVACITASMVSLGLGAVSIPLDVIINSLFdlEGPKQTYIIWKSRLPRVLIALMAGASLAVSGVIVQAIVRNPLA 106
Cdd:PRK09777   4 ALVIFITLALAGCALLSLRMGVIPLPWRALLTDWQ--AGDEHYYVLMEYRLPRLLLALFVGAALAVSGVLVQGIVRNPLA 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400 107 SPKIMGINSGAALAALGTIMFLPEMPVTYLPVAAALGGIVAAVIVLFAAhlRQVSPARLALVGIAVGMVCDAGVDYLLVT 186
Cdd:PRK09777  82 SPDILGVNHAASLASVGALLLFPSLPVMWLPLLAFIGGMAGLILLKMLA--GTHQPMKLALTGVALSALWASLTDYLMLS 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400 187 AAtLEISNPLVWLTGSLWARTWAHVHSIWLPLVSLLGLTMVLSYQLDLQQLGDQTARGLGQSTNKMRLLLLGVATLLASI 266
Cdd:PRK09777 160 RP-QDINNALLWLTGSLWGRDWSFVKVALPWLILLLPLSLSFCRDLDLLALGDARATTLGVSVPHTQFWALLLAVALTAT 238

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 916485400 267 SVGVVGVIGFIGLMSPHISRSLVGGRHRVLLPTAALVGALLVVLADAVGRAIAPPIEVSAGILSAMLGAPYFIWIMSR 344
Cdd:PRK09777 239 GVAACGPISFIGLVVPHLMRSLVGGRHRRLLPVSALTGALLLLLADLLARIIHPPLELPAGVLTAIIGAPWFFWLLVR 316
FepG COG4779
ABC-type enterobactin transport system, permease component [Inorganic ion transport and ...
 21-345 9.22e-76

ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 443810  Cd Length: 344  Bit Score: 236.94  E-value: 9.22e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400  21 RSTKAFRVQLVLFVACITASMVSLGLGAVSIPLDVIINSLFDLEGPKQTYIIWKSRLPRVLIALMAGASLAVSGVIVQAI 100
Cdd:COG4779   18 LRRRALLVTLVLLLLLLALAVLALTLGDYPLSPGDVLRALLGEGDPGASFVVLELRLPRALAALLVGAALGLSGAIFQSL 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400 101 VRNPLASPKIMGINSGAALAALGTIMFLPeMPVTYLPVAAALGGIVAAVIVLFAAHLRQVSPARLALVGIAVGMVCDAGV 180
Cdd:COG4779   98 TRNPLASPDIIGITAGASAGAVAAIVVLG-GSGLAVALGALAGGLATALLVYLLAWRGGVSGYRLILVGIGVSAMLTAVN 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400 181 DYLLVTAATLEISNPLVWLTGSLWARTWAHVHSIWLPLVSLLGLTMVLSYQLDLQQLGDQTARGLGQSTNKMRLLLLGVA 260
Cdd:COG4779  177 SYLLTRADLEDAQSAAVWLTGSLNGRTWEDVLPLAVALAVLLPLALALARRLRLLELGDDTAAALGVRVERTRLLLLLVA 256

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400 261 TLLASISVGVVGVIGFIGLMSPHISRSLVGGRhRVLLPTAALVGALLVVLADAVGRAIAPPIEVSAGILSAMLGAPYFIW 340
Cdd:COG4779  257 VALAAVATAAAGPIAFVALAAPQIARRLTRSP-GPPLLPSALVGALLLLAADLVAQHLLAPVQLPVGVVTGALGGPYLLW 335


                 ....*
gi 916485400 341 IMSRS 345
Cdd:COG4779  336 LLIRE 340
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
4-347 3.74e-70

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 231.27  E-value: 3.74e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400   4 LAEASAPPQWRVDFKTHRSTKAFR-VQLVLFVACITASMVSLGLGAVSIPLDVIINSLFDlegpkqtyIIWKSRLPRVLI 82
Cdd:PRK10577 332 LRSAQSAPAMSAGDRVAARRRRVLaWLLALGLLLLLALVVALSFGRDAHGWNWLSGQLLD--------ALLPLRLPRLLA 403

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400  83 ALMAGASLAVSGVIVQAIVRNPLASPKIMGINSGAALAALGTIMFLPEMPVTYLPVAAALGGIVAAVIVLFAAHLRQVSP 162
Cdd:PRK10577 404 ALLAGAMLAVAGTLLQRLTRNPLASPEVLGISSGAGLGVVLALFLVPGAGFGWLLAAALLGALAALALILLLARRGGFAP 483

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400 163 ARLALVGIAVGMVCDAGVDYLLVTAaTLEISNPLVWLTGSLWARTWAHVHSIWLPLVSLLGLTMVLSYQLDLQQLGDQTA 242
Cdd:PRK10577 484 ERLLLTGIALSALFTALIQLLLASG-DPRAAQLLTWLSGSTYGVTWAQALPLLIVAVLLLALALLLRRWLDLLPLGDDTA 562

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400 243 RGLGQSTNKMRLLLLGVATLLASISVGVVGVIGFIGLMSPHISRSLVGGRHRVLLPTAALVGALLVVLADAVGRAIAPPI 322
Cdd:PRK10577 563 RALGLPVTRARLALLLLAALLTAAATATVGPLSFVGLMAPHLARMLGGRRARPQLVLAALLGALLMVLADWLGRTLLFPY 642

                        330       340
                 ....*....|....*....|....*
gi 916485400 323 EVSAGILSAMLGAPYFIWIMSRSQK 347
Cdd:PRK10577 643 QIPAGLLAALIGAPYFLWLLRRSRR 667
BtuC COG4139
ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and ...
 17-349 9.96e-57

ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and metabolism];


Pssm-ID: 443314  Cd Length: 327  Bit Score: 187.37  E-value: 9.96e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400  17 FKTHRSTKAFRVQLVLFVACITASMVSLGLGAVSIPLdviinslFDLEGPKQTYIIWKSRLPRVLIALMAGASLAVSGVI 96
Cdd:COG4139    3 LPQRQRRRDRRWLLLLLLLLLLLFVLSLCAGEVWIPP-------TQWLSEAWQLFVWQLRLPRTLAAVLVGASLAVSGAV 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400  97 VQAIVRNPLASPKIMGINSGAALAALGTIMFLPEM-PVTYLPVAAALGGIVAAVIVLFAAHlRQVSPARLALVGIAVGMV 175
Cdd:COG4139   76 MQALFENPLAEPGLLGISNGAGVGLVLVVLLGGGLlPPWLLSLAAIAGALLVTLLLLAFAR-RRLSNARLLLIGVALGII 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400 176 CDAGVDYLLVTAATLEISNPLVWLTGSLWARTWAHvHSIWLPLVSLLGLTMVLSYQLDLQQLGDQTARGLGQSTNKMRLL 255
Cdd:COG4139  155 CSAIMTWAVYFSSSLDLRQLMYWMMGSFGGVDWRQ-LWLLLALLPVLLWLCLQGKPLNLLLLGENQARQLGLSVHRWRNL 233

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400 256 LLGVATLLASISVGVVGVIGFIGLMSPHISRSLVGGRHRVLLPTAALVGALLVVLADAVGRAIAPPIEVSAGILSAMLGA 335
Cdd:COG4139  234 LVLATGLLVGVSVALAGPIGFVGLVVPHLLRLLGTTDHRFLLPACALAGAALLLLADIIARLALSSAELPIGVVTATLGA 313

                        330
                 ....*....|....
gi 916485400 336 PYFIWIMSRSQKGQ 349
Cdd:COG4139  314 PVFIWLLLRRRKIR 327
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
20-351 2.07e-53

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 186.20  E-value: 2.07e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400  20 HRSTKAFRVQLVLFVACITASMVSLGLGAVSIPLDVIINSLFDLEGPK-QTYIIWKSRLPRVLIALMAGASLAVSGVIVQ 98
Cdd:PRK10577   5 MSRRRARLPALLLALLLLLALALTLTQLSAALPLSQWLQALWGPDADDlEQLLLHYSRLPRLAIALLVGAALGLAGALLQ 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400  99 AIVRNPLASPKIMGINSGAALAALGTIMFLPEMPVTYLPVAAALGGIVAAVIVLFAAHLRQVSPARLALVGIAVGMVCDA 178
Cdd:PRK10577  85 QVLRNPLASPTTLGVAAGAQLALVLATLFAPALLALASQLAAFAGGLLAAALVFALAGGKRLSPLRLVLAGMVVSLYLGA 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400 179 gVDYLLVTAATLEISNPLVWLTGSLWARTWAHVHSIWLPLVSLLGLTMVLSYQLDLQQLGDQTARGLGQSTNKMRLLLLG 258
Cdd:PRK10577 165 -LTTLLLLFNEQYLQGLFLWGAGSLAQNDWSGVQRLLPRLLVGLLLLLLLARPLTLLGLGDDVARSLGLAVSLTRLAALA 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400 259 VATLLASISVGVVGVIGFIGLMSPHISRSLVGGRHRVLLPTAALVGALLVVLADAVGRAIAPP--IEVSAGILSAMLGAP 336
Cdd:PRK10577 244 LAVLLSAAVVSAVGPIGFIGLAAPNLARLLGARRLRARLPLSPLIGALLLLLTDQLVRLLAGVggELLPTGAVTALIGAP 323

                        330
                 ....*....|....*
gi 916485400 337 YFIWIMSRSQKGQSA 351
Cdd:PRK10577 324 LLLWLLPRLRSAQSA 338
PRK03784 PRK03784
vtamin B12-transporter permease; Provisional
 16-346 1.03e-52

vtamin B12-transporter permease; Provisional


Pssm-ID: 235159  Cd Length: 331  Bit Score: 177.07  E-value: 1.03e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400  16 DFKTHRSTKAFRVQLVLFVACITASMVSLGLGAVSIpldviinSLFDLEGPKQTYIIWKSRLPRVLIALMAGASLAVSGV 95
Cdd:PRK03784   5 TLARQQQRRNRRWLLGLSVLLLLALLLSLCAGEQWI-------SPGDWLSPRGELFVWQLRLPRTLAVLLVGAALAVSGA 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400  96 IVQAIVRNPLASPKIMGINSGAALAALGTIMFLPEM-PVTYLPVAAALGGIVAAVIVLFAAHLRQVSPARLALVGIAVGM 174
Cdd:PRK03784  78 VMQALFENPLAEPGLLGVSNGAGVALVAAVLLGQGLlPPWALSLCAIAGALLITLILLRFARRHRLSTSRLLLAGVALGI 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400 175 VCDAGVDYLLVTAATLEISNPLVWLTGSLWARTWAHvHSIWLPLVSLLGLTMVLSYQLDLQQLGDQTARGLGQSTNKMRL 254
Cdd:PRK03784 158 ICSALMTWAVYFSTSLDLRQLMYWMMGGFGGVDWRQ-SWLMLALLPVLIWLCCQGRPLNMLALGEISARQLGLPLWFWRN 236

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400 255 LLLGVATLLASISVGVVGVIGFIGLMSPHISRSLVGGRHRVLLPTAALVGALLVVLADAVGRAIAPPIEVSAGILSAMLG 334
Cdd:PRK03784 237 LLVLATGWLVGVSVALAGAIGFIGLVIPHILRLCGLTDHRVLLPGCALAGASLLLLADIVARLALASAELPIGVVTATLG 316

                        330
                 ....*....|..
gi 916485400 335 APYFIWIMSRSQ 346
Cdd:PRK03784 317 APVFIWLLLRSH 328
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 80-342 5.23e-51

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 170.43  E-value: 5.23e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400  80 VLIALMAGASLAVSGVIVQAIVRNPLASPKIMGINSGAALAALGTIMFLPEMPVTYLPVAAALGGIVAAVIVLFAAHLRQ 159
Cdd:cd06550    1 LLAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLGIGLSNYALGAFAFAGALAIALLVLLLASRGG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400 160 VSPARLALVGIAVGMVCDAGVDYLLVTAaTLEISNPLVWLTGSLWARTWAHVHSIWLPLVSLLGLTMVLSYQLDLQQLGD 239
Cdd:cd06550   81 LSPSKLILIGIVLSAFFSAGVILISLLS-DDSLQDLNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLTFDE 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400 240 QTARGLGQSTNKMRLLLLGVATLLASISVGVVGVIGFIGLMSPHISRSLVGGRHRVLLPTAALVGALLVVLADAVGRAIA 319
Cdd:cd06550  160 DLAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSRTLL 239

                        250       260
                 ....*....|....*....|...
gi 916485400 320 pPIEVSAGILSAMLGAPYFIWIM 342
Cdd:cd06550  240 -PSELPVGPVTALLGAPYFLYLL 261
fecC PRK11228
iron-dicitrate ABC transporter permease FecC;
70-344 3.86e-46

iron-dicitrate ABC transporter permease FecC;


Pssm-ID: 183042  Cd Length: 323  Bit Score: 159.86  E-value: 3.86e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400  70 YIIWKSRLPRVLIALMAGASLAVSGVIVQAIVRNPLASPKIMGINSGAALAALGTIMFLPEMPVTY-LPVAAALGGIVAA 148
Cdd:PRK11228  45 ALVQNLRLPRSLVAVLIGASLALAGALLQTLTHNPLASPSLLGINSGAALAMALTSALSPTPFAGYsLAFIAACGGGLSW 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400 149 VIVLFAAHLRQVSPAR--LALVGIAVGMVCdAGVDYLLVTAATLEISNPLVWLTGSLWARTWAHVHSIWLPLVSLLGLTM 226
Cdd:PRK11228 125 LLVMTAGGGWRHTHDRnrLILAGIALSALC-MALTRITLLLAEDHAYGIFYWLAGGVSHARWQEVWQLLPFVVTAVPVVL 203

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400 227 VLSYQLDLQQLGDQTARGLGQSTNKMRLLLLGVATLLASISVGVVGVIGFIGLMSPHISRSLVGGRHRVLLPTAALVGAL 306
Cdd:PRK11228 204 LLANQLNLLNLSDSSAHTLGVNLTRLRLVVNMLVLLLVGACVSVAGPVAFIGLLVPHLARFWIGYDQRNVLPMSMLLGAT 283

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 916485400 307 LVVLADAVGRAIAPPIEVSAGILSAMLGAPYFIWIMSR 344
Cdd:PRK11228 284 LMLLADLLARALAFPGELPAGAVLALIGAPCFVWLARR 321
F420-0_ABCperm TIGR03869
proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter ...
 71-349 2.43e-44

proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.


Pssm-ID: 163581  Cd Length: 325  Bit Score: 155.01  E-value: 2.43e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400   71 IIWKSRLPRVLIALMAGASLAVSGVIVQAIVRNPLASPKIMGINSGAALAALGTIMFLPEMpvtYLPVAAALGGIVAAVI 150
Cdd:TIGR03869  48 IVWDLRLPRVLTAAAVGAGLAIAGAVMQSLTRNPLADPYLLGLSSGASLGAVAVLVLGVAV---LLPVAAFAGALLALAA 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400  151 VL-FAAHLRQVSPARLALVGIAVGMVCDAGVDYLLVTAATLE-ISNPLVWLTGSLWARTWAHVhSIWLPLVSLLGLTMVL 228
Cdd:TIGR03869 125 TLgLARTLGTLTPTRTILAGLAVSQLCAAVTSFVIFWSATGDsYREILSWLMGSLAGATWGSV-AIAGGALLVVGLVLLA 203

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400  229 SYQ-LDLQQLGDQTARGLGQSTNKMRLLLLGVATLLASISVGVVGVIGFIGLMSPHISRSLVGGRHRVLLPTAALVGALL 307
Cdd:TIGR03869 204 SGRvLDAFAFGDSSAAALGVDVERTRWLLLTLVALLTGALVSVSGAIGFVGLILPHAVRLLTGPRHRLLLPVSALAGAVF 283

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 916485400  308 VVLADAVGRAIAPPIEVSAGILSAMLGAPYFIWIMSRSQKGQ 349
Cdd:TIGR03869 284 LVWADTLARTVFAPRELPVGIITALIGAPVFAVLLYRSRSGA 325
PRK10441 PRK10441
Fe(3+)-siderophore ABC transporter permease;
28-348 3.61e-44

Fe(3+)-siderophore ABC transporter permease;


Pssm-ID: 182464  Cd Length: 335  Bit Score: 154.86  E-value: 3.61e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400  28 VQLVLFVACITASMVSLGLGAVSIPLDVIINSLFDLEGPKQTYIIWKSRLPRVLIALMAGASLAVSGVIVQAIVRNPLAS 107
Cdd:PRK10441  12 AVPGLLLLLIIATALSLLIGAKSLPASVVLEALSGTCQSADCTIVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLAD 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400 108 PKIMGINSGAALA-ALGTIMFLPEMPVTYLpVAAALGGIVAAVIVLFAAHL--RQVSPARLALVGIAVGMVcdagvdyLL 184
Cdd:PRK10441  92 PGLLGVNAGASFAiVLGAALFGYSSAQEQL-AMAFAGALVASLIVAFTGSQggGQLSPVRLTLAGVALAAV-------LE 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400 185 VTAATLEISNPLV------WLTGSLWARTWAHVHSIWLPLVSLLGLTMVLSYQLDLQQLGDQTARGLGQSTNKMRLLLLG 258
Cdd:PRK10441 164 GLTSGIALLNPDVydqlrfWQAGSLDIRNLHTLKVVLIPVLIAGATALLLSRALNSLSLGSDTATALGSRVARTQLIGLL 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400 259 VATLLASISVGVVGVIGFIGLMSPHISRSLVGGRHRVLLPTAALVGALLVVLADAVGRAIAPPiEVSAGILSAMLGAPYF 338
Cdd:PRK10441 244 AITVLCGSATAVVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALLLFADIIGRLLVPG-ELRVSVVSAFIGAPVL 322

                        330
                 ....*....|
gi 916485400 339 IWIMSRSQKG 348
Cdd:PRK10441 323 IFLVRRKTRG 332
btuC PRK09535
cobalamin ABC transporter permease BtuC;
25-344 3.43e-42

cobalamin ABC transporter permease BtuC;


Pssm-ID: 236553  Cd Length: 366  Bit Score: 150.29  E-value: 3.43e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400  25 AFRVQLVLFVACITASMVSLGLGAVSIPLDVIINSLFDLEGPKQTyIIWKSRLPRVLIALMAGASLAVSGVIVQAIVRNP 104
Cdd:PRK09535  45 AVAVPVGVAVTTHGVPVLSVGLSLPAPDLEYASPFSFAVPETAQT-IVLQIRLPRILLAATVGFALAAAGTVMQGFFRNP 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400 105 LASPKIMGINSGAALAALGTIMFLPEMPVTyLPVAAALGGIVAAVIVLFAAHLRQVSP-ARLALVGIAVGMVCDAGVDYL 183
Cdd:PRK09535 124 MADPSIIGVSSGAAVGAVAAIVLPLAVPFG-LQAAAFAGALVAAFGVYAIATENGRTPvATLLLAGVAVQTFLGAVISYL 202

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400 184 LVTAATlEISNPLVWLTGSLWARTWAHVHSIWLPLVSLLGLTMVLSYQLDLQQLGDQTARGLGQSTNKMRLLLLGVATLL 263
Cdd:PRK09535 203 LLHSGE-SLRRAVYWLMGHLHGSTWSDVEVALPVVVVGFVVLLAYARDLNVLLLGEEDAHTLGIEVERTKRLLLALASVV 281

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400 264 ASISVGVVGVIGFIGLMSPHISRSLVGGRHRVLLPTAALVGALLVVLADAVGRaiAPPIEVSAGILSAMLGAPYFIWIMS 343
Cdd:PRK09535 282 TAAAVAVAGVIGFVGLIVPHVMRLLVGPDHRILLPTSALAGASFLVATDTVAR--SGPAEVPVGIVTAALGAPFFLYLLR 359


                 .
gi 916485400 344 R 344
Cdd:PRK09535 360 T 360
PRK10440 PRK10440
iron-enterobactin ABC transporter permease;
22-344 3.84e-41

iron-enterobactin ABC transporter permease;


Pssm-ID: 182463  Cd Length: 330  Bit Score: 146.78  E-value: 3.84e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400  22 STKAFRVQLVLFVACITASMVSLGLGAVSIPLDVIINSLFDLEGPKQTYIIWKSRLPRVLIALMAGASLAVSGVIVQAIV 101
Cdd:PRK10440   5 SRRLLITCLLLLAACVAAGLWGLRSGAVTLETSQVFAALMGDAPRSMTMVVTEWRLPRVLMALLIGAALGVSGAIFQSLM 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400 102 RNPLASPKIMGINSGAALAALgTIMFLPEMPVTYLPVAAALGGIVAAVIVLFAAHLRQVSPARLALVGIAVGMVCDAGVD 181
Cdd:PRK10440  85 RNPLGSPDVMGFNTGAWSGVL-VAMVLFGQDLTAIALAAMAGGIVTSLLVWLLAWRNGIDTFRLIIIGIGVRAMLVAFNT 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400 182 YLLVTAATLEISNPLVWLTGSLWARTWAHVHSIWLPLVSLLGLTMVLSYQLDLQQLGDQTARGLGQSTNKMRLLLLGVAT 261
Cdd:PRK10440 164 WLLLKASLETALTAGLWNAGSLNGLTWAKTSPSAPIIILMLIAAALLVRRMRLLEMGDDTACALGVSVERSRLLLMLVAV 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400 262 LLASISVGVVGVIGFIGLMSPHISRSLVGGRhRVLLPTAALVGALLVVLADAVGRAIAPPIEVSAGILSAMLGAPYFIWI 341
Cdd:PRK10440 244 VLTAAATALAGPISFIALVAPHIARRLSGTA-RWGLTQAALCGALLLLAADLCAQQLFMPYQLPVGVVTVSLGGIYLIVL 322


                 ...
gi 916485400 342 MSR 344
Cdd:PRK10440 323 LIQ 325
PRK05428 PRK05428
HPr kinase/phosphorylase; Provisional
 45-115 7.28e-03

HPr kinase/phosphorylase; Provisional


Pssm-ID: 235459 [Multi-domain]  Cd Length: 308  Bit Score: 37.84  E-value: 7.28e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916485400  45 GLGAV--SIPLDVIIN-------SLFD-LEGPKQTYIIWKSRLPRVLIALMAGASLAvsgVIVQAIVRNPLAspKIMGIN 114
Cdd:PRK05428 216 GATAVrdKKRIQLVVEleewdedKEYDrLGLDEETEEILGVKIPKITIPVRPGRNLA---VIIEAAARNYRL--KLMGYD 290


                 .
gi 916485400 115 S 115
Cdd:PRK05428 291 A 291
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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