|
Name |
Accession |
Description |
Interval |
E-value |
| PTS-II-ABC-beta |
TIGR01995 |
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS ... |
3-451 |
2.06e-133 |
|
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Pssm-ID: 273919 [Multi-domain] Cd Length: 610 Bit Score: 397.88 E-value: 2.06e-133
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 3 YQQLAKDIIERIGGLNNVKDVTHCATRLRFTLNTMDPVDKGTVSALPGVLGAVESSGQFQVILGQQVGHVFSAITLLKNN 82
Cdd:TIGR01995 1 YQDLAKAIIENVGGKENIESVTHCATRLRFTLKDDAKADTEKLKKISGVITVVKSGGQYQVVIGNDVNDVYQALMDVLGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 83 KSNATPAEVRQdpadvqkmkKENVVSQALGIISGIFTPILPAISGAAMLKTLLIILTMTGLMEKTSQTWVVLNFAADTTF 162
Cdd:TIGR01995 81 DDQAEDDDSKG---------KKSILNKLIDLISGVFTPLLPALAGAGLLKAVLTLLTMTGLISADSQTYQILNAMGDAVF 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 163 YFLPIMLAYTSAMKFGMNPFVAMTLGGMLLHPTFTAMVATRSPLSFLNVPVSLVHYGSTVIPVILMVWIASWAESLSERL 242
Cdd:TIGR01995 152 YFLPILLAITAAKRFKVNPYLAAAIGAALLHPTLVAMVGSGKPVTFFGIPVTLMSYSSSVIPVILAVWLMSYVEKFLKKV 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 243 SPRAILFFMKPFLTLLIMVPLGLTIIAPFGDFVGKGIGVGITYVNDHCIWLLPFIMAVFSPIFIMTGMHYAVtMPITFQS 322
Cdd:TIGR01995 232 IPGALKNFLTPLLVMLITVPLTLLIIGPLGNYAGEGISSGILFLYEVSPWLAGALLAALWPVLVMFGLHWAM-IPIVINN 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 323 LATNGFD-MIGAGFLVSNIAQGAAALAAARFSKDADFRALASGAGFTALLGITEPALYGVNLKLKKPFYAVLVAGAVGGL 401
Cdd:TIGR01995 311 IATQGFDpLILPASLAANFAQGGAALAVMLRTKNKKLKALAGSATISALFGITEPAIYGVNLPLKKPFYAAMIGGAVGGA 390
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 917084786 402 FVGIMGVKRMTLAPTGLTTLPVFIDPNNSMNIVFAISGAAISFCVAYLLT 451
Cdd:TIGR01995 391 IIGIGSVKAFTAFAPGLLGLPMFINPSDGANFISALIAIVISFVVSFVLT 440
|
|
| PRK09796 |
PRK09796 |
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional |
1-454 |
7.57e-90 |
|
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Pssm-ID: 182081 Cd Length: 472 Bit Score: 281.68 E-value: 7.57e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 1 MNYQQLAKDIIERIGGLNNVKDVTHCATRLRFTLNTMDPVDKGTVSALPGVLGAVESSGQFQVILGQQVGHVFSAITLLK 80
Cdd:PRK09796 3 KNYAALARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIGNTVSQAFQEVVSLL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 81 NnkSNATPAEvrqdPADVQKMKKENVVSQALGIISGIFTPILPAISGAAMLKTLLIILTMTGLMEKTSQTWVVLNFAADT 160
Cdd:PRK09796 83 P--GDMQPAQ----PVGKPKLTLRRIGAGILDALIGTMSPLIPAIIGGSMVKLLAMILEMSGVLTKGSPTLTILNVIGDG 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 161 TFYFLPIMLAYTSAMKFGMNPFVAMTLGGMLLHPTFTAMVATRS---PLSFLNVPVSLVHYGSTVIPVILMVWIASWAES 237
Cdd:PRK09796 157 AFFFLPLMVAASAAIKFKTNMSLAIAIAGVLVHPSFIELMAKAAqgeHVEFALIPVTAVKYTYTVIPALVMTWCLSYIER 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 238 LSERLSPRAILFFMKPFLTLLIMVPLGLTIIAPFGDFVGKGIGVGITYVNDHCIWLLPFIMAVFSPIFIMTGMHYAVTmP 317
Cdd:PRK09796 237 WVDRITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGSAISALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRVFT-P 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 318 ITFQSLATNGFD-MIGAGFLVSNIAQGAAALAAARFSKDADFRALASGAGFTALL-GITEPALYGVNLKLKKPFYAVLVA 395
Cdd:PRK09796 316 TIIQTIAETGKEgMVMPSEIGANLSLGGSSLAVAWKTKNPELRQTALAAAASAIMaGISEPALYGVAIRLKRPLIASLIS 395
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 917084786 396 GAVGGLFVGIMGVKRMTLAPTGLTTLPVFIDPNNSMNIVFAISGAAISFCVAYLLTVVL 454
Cdd:PRK09796 396 GFICGAVAGMAGLASHSMAAPGLFTSVQFFDPANPMSIVWVFAVMALAVVLSFILTLLL 454
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
100-454 |
3.75e-82 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 261.42 E-value: 3.75e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 100 KMKKENVVSQALGIISGIFTPILPAISGAAMLKTLLIILTMTGLMEK---TSQTWVVLNFAADTTFYFLPIMLAYTSAMK 176
Cdd:COG1263 1 AKKKKNPLFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLLGEgsfLSGTYQILNAAGDAVFYFLPLLFAIGAAKG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 177 FGMNPFVAMTLGGMLLHPTFTAMVATRS-PLSFLNVPVsLVHYGSTVIPVILMVWIASWAESLSERLSPRAILFFMKPFL 255
Cdd:COG1263 81 FGGNPALAAVIGYLLVHPTLLNAYAVAGgYISFLGIPT-LIGYQGGVFPGILAGWLAAYLEKFLKKKLPDALGFFFVPIL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 256 TLLIMVPLGLTIIAPFGDFVGKGIGVGITYVNDHCIWLLPFIMAVFSPIFIMTGMHYAVTMPITFQsLATNGFDMIGAGF 335
Cdd:COG1263 160 TLLIMVPLALLVIGPIWPPIGNGIAAGLGWIYGLAGAIGGFIYGFLYRLLVPTGLHHGLNPIFWFL-LGGTGDDGLFPIL 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 336 LVSNIAQGAAALAAARFSK-DADFRALASGAGFTALL-GITEPALYGVNLKLKKPFYAVLVAGAVGGLFVGIMGVKRMTL 413
Cdd:COG1263 239 AAAMFGQPGAALAVYLKAKpNKKVKGLAISAALTAFLtGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAGLLGVKAFSF 318
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 917084786 414 APTGLTTLPVFIDPnNSMNIVFAISGAAISFCVAYLLTVVL 454
Cdd:COG1263 319 GVGGLIDFPSILNP-GATNLLLYLIGLVIAFVYYFVFTFLI 358
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
4-76 |
4.75e-23 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 92.60 E-value: 4.75e-23
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 917084786 4 QQLAKDIIERIGGLNNVKDVTHCATRLRFTLNTMDPVDKGTVSALPGVLGAVESSGQFQVILGQQVGHVFSAI 76
Cdd:cd00212 1 EQLAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGPGVADVYKEA 73
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
115-389 |
2.20e-14 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 73.92 E-value: 2.20e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 115 SGIFTPILPAISGAAMLKTLLIILTMTGLMEKTSQTW-----VVLNFAADTTFYFLPIMLAYTSAMKF-GMNPFVAMTLG 188
Cdd:pfam02378 1 GDGFMPPIPLLIAGGILLGLGNLPNDTTGLPAGGFTGdsplaEILKQAGSAAFGILPILFAIGIAYGLaGGDGVAGAAGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 189 GMLLHPT-------FTAMVATRSPLSFLNVPVSLVHYGSTVIPVILMVWIASWAESLSERLSPRAILFFMKPFLTLLIMV 261
Cdd:pfam02378 81 IGLLSFNlaaaisvALTAAGLSGGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKNITIKLPDSLPFFVGKRFVPIITG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 262 PLGLTIIAPFGDFVGKGIGVGIT----YVNDHCIWLLPFIMAVFSPIFIMTGMHYAVTMPITF-----------QSLATN 326
Cdd:pfam02378 161 FVTLLVIGPVLGLIWPAIQGGLNalglLLIIAGGILGGLIFGFLERLLWPFGLHGAFIAIFWFlpiggsnpianQQAYGA 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 917084786 327 GFDMIGAGFLVSNI----AQGAAALAAARFSKDADFRALASGAGFTALLGITEPALYGVNLKLKKPF 389
Cdd:pfam02378 241 GAAHILTGGFDVMFggpgATLALYAAAFLFKKSKVKKLLGSAALTPFLFGITEPLEFGFPFVLNPPF 307
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PTS-II-ABC-beta |
TIGR01995 |
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS ... |
3-451 |
2.06e-133 |
|
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Pssm-ID: 273919 [Multi-domain] Cd Length: 610 Bit Score: 397.88 E-value: 2.06e-133
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 3 YQQLAKDIIERIGGLNNVKDVTHCATRLRFTLNTMDPVDKGTVSALPGVLGAVESSGQFQVILGQQVGHVFSAITLLKNN 82
Cdd:TIGR01995 1 YQDLAKAIIENVGGKENIESVTHCATRLRFTLKDDAKADTEKLKKISGVITVVKSGGQYQVVIGNDVNDVYQALMDVLGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 83 KSNATPAEVRQdpadvqkmkKENVVSQALGIISGIFTPILPAISGAAMLKTLLIILTMTGLMEKTSQTWVVLNFAADTTF 162
Cdd:TIGR01995 81 DDQAEDDDSKG---------KKSILNKLIDLISGVFTPLLPALAGAGLLKAVLTLLTMTGLISADSQTYQILNAMGDAVF 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 163 YFLPIMLAYTSAMKFGMNPFVAMTLGGMLLHPTFTAMVATRSPLSFLNVPVSLVHYGSTVIPVILMVWIASWAESLSERL 242
Cdd:TIGR01995 152 YFLPILLAITAAKRFKVNPYLAAAIGAALLHPTLVAMVGSGKPVTFFGIPVTLMSYSSSVIPVILAVWLMSYVEKFLKKV 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 243 SPRAILFFMKPFLTLLIMVPLGLTIIAPFGDFVGKGIGVGITYVNDHCIWLLPFIMAVFSPIFIMTGMHYAVtMPITFQS 322
Cdd:TIGR01995 232 IPGALKNFLTPLLVMLITVPLTLLIIGPLGNYAGEGISSGILFLYEVSPWLAGALLAALWPVLVMFGLHWAM-IPIVINN 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 323 LATNGFD-MIGAGFLVSNIAQGAAALAAARFSKDADFRALASGAGFTALLGITEPALYGVNLKLKKPFYAVLVAGAVGGL 401
Cdd:TIGR01995 311 IATQGFDpLILPASLAANFAQGGAALAVMLRTKNKKLKALAGSATISALFGITEPAIYGVNLPLKKPFYAAMIGGAVGGA 390
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 917084786 402 FVGIMGVKRMTLAPTGLTTLPVFIDPNNSMNIVFAISGAAISFCVAYLLT 451
Cdd:TIGR01995 391 IIGIGSVKAFTAFAPGLLGLPMFINPSDGANFISALIAIVISFVVSFVLT 440
|
|
| PRK09796 |
PRK09796 |
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional |
1-454 |
7.57e-90 |
|
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Pssm-ID: 182081 Cd Length: 472 Bit Score: 281.68 E-value: 7.57e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 1 MNYQQLAKDIIERIGGLNNVKDVTHCATRLRFTLNTMDPVDKGTVSALPGVLGAVESSGQFQVILGQQVGHVFSAITLLK 80
Cdd:PRK09796 3 KNYAALARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIGNTVSQAFQEVVSLL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 81 NnkSNATPAEvrqdPADVQKMKKENVVSQALGIISGIFTPILPAISGAAMLKTLLIILTMTGLMEKTSQTWVVLNFAADT 160
Cdd:PRK09796 83 P--GDMQPAQ----PVGKPKLTLRRIGAGILDALIGTMSPLIPAIIGGSMVKLLAMILEMSGVLTKGSPTLTILNVIGDG 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 161 TFYFLPIMLAYTSAMKFGMNPFVAMTLGGMLLHPTFTAMVATRS---PLSFLNVPVSLVHYGSTVIPVILMVWIASWAES 237
Cdd:PRK09796 157 AFFFLPLMVAASAAIKFKTNMSLAIAIAGVLVHPSFIELMAKAAqgeHVEFALIPVTAVKYTYTVIPALVMTWCLSYIER 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 238 LSERLSPRAILFFMKPFLTLLIMVPLGLTIIAPFGDFVGKGIGVGITYVNDHCIWLLPFIMAVFSPIFIMTGMHYAVTmP 317
Cdd:PRK09796 237 WVDRITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGSAISALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRVFT-P 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 318 ITFQSLATNGFD-MIGAGFLVSNIAQGAAALAAARFSKDADFRALASGAGFTALL-GITEPALYGVNLKLKKPFYAVLVA 395
Cdd:PRK09796 316 TIIQTIAETGKEgMVMPSEIGANLSLGGSSLAVAWKTKNPELRQTALAAAASAIMaGISEPALYGVAIRLKRPLIASLIS 395
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 917084786 396 GAVGGLFVGIMGVKRMTLAPTGLTTLPVFIDPNNSMNIVFAISGAAISFCVAYLLTVVL 454
Cdd:PRK09796 396 GFICGAVAGMAGLASHSMAAPGLFTSVQFFDPANPMSIVWVFAVMALAVVLSFILTLLL 454
|
|
| PTS-II-BC-sucr |
TIGR01996 |
PTS system, sucrose-specific IIBC component; This model represents the fused enzyme II B and C ... |
2-454 |
9.36e-88 |
|
PTS system, sucrose-specific IIBC component; This model represents the fused enzyme II B and C components of the sucrose-specific PTS sugar transporter system. Sucrose is converted to sucrose-6-phosphate in the process of translocation into the cell. Some of these transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci, Streptococci, Lactococci, Lactobacilli, etc. which contain their own A domain as a C-terminal fusion. This family is closely related to the trehalose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively).
Pssm-ID: 131051 Cd Length: 461 Bit Score: 275.72 E-value: 9.36e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 2 NYQQLAKDIIERIGGLNNVKDVTHCATRLRFTLNTMDPVDKGTVSALPGVLGAVESSGQFQVILGQ-QVGHVFSAITLLK 80
Cdd:TIGR01996 1 NYQQVAKEILELLGGKDNIVSVAHCATRLRLVLKDESKIDKKAIENLDGVKGTFFNSGQYQIIIGTgVVNKVYDEIVKLT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 81 NNkSNATPAEVRQDPAdvqkmKKENVVSQALGIISGIFTPILPAISGAAMLKTLLIILTMTGLM--------EKTSQTWV 152
Cdd:TIGR01996 81 GL-SESSTSEQKAEAA-----KKMNPFQRFARTLSDIFVPIIPAIVATGLLMGLNGMLTAFGLFglsgvsvaPIPEGLAE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 153 VLNFAADTTFYFLPIMLAYTSAMKFGMNPFVAMTLGGMLLHP------TFTAMVATRSPLSFLNVPVSLVHYGSTVIPVI 226
Cdd:TIGR01996 155 MINVFTSTAFAFLPILIGFSAAKRFGGNPYLGAVIGLIMVHPslpnayGVAAGTATGKAWNIFGLHIPVVGYQGTVLPVL 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 227 LMVWIASWAESLSERLSPRAILFFMKPFLTLLIMVPLGLTIIAPFGDFVGKGIGVGITYVNDHCIWLLPFIMAVFSPIFI 306
Cdd:TIGR01996 235 VAVWILAKIEKFLRKVVPNALDLLLTPFLTLLITGFLTLLVIGPIGRWVGDVLTDGLQWLYDLPGGLGGLLFGGLYSLIV 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 307 MTGMHYAVTMpITFQSLATNGfdmIGAGFLV-----SNIAQGAAALAAARFSKDADFRALASGAGFTALLGITEPALYGV 381
Cdd:TIGR01996 315 ITGIHHSFHA-IETQLLANTK---TGGNFLFpiasmANVAQGGAALAVFFKTKDKKLKGLAIPSGLSALLGITEPAIFGV 390
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 917084786 382 NLKLKKPFYAVLVAGAVGGLFVGIMGVKRMTLAPTGLTTLPVFIdpNNSMNIVFAISGAAISFCVAYLLTVVL 454
Cdd:TIGR01996 391 NLRYRKPFIAALIGGAIGGAYVVLFHVAATAYGLTGIPGFLSIL--PSGINLLHYIVGMLIAFAVAFIATLLL 461
|
|
| PRK09824 |
PRK09824 |
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional |
1-454 |
4.67e-85 |
|
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Pssm-ID: 236627 [Multi-domain] Cd Length: 627 Bit Score: 273.51 E-value: 4.67e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 1 MNYQQLAKDIIERIGGLNNVKDVTHCATRLRFTLNTMDPVDKGTVSALPGVLGAVESSGQFQVILGQQVGHVFSAItllk 80
Cdd:PRK09824 1 MEYTELAREIVAGVGGADNIVSLMHCATRLRFKLKDNSKAQAEVLKKNPGVIMVVESGGQFQVVIGNHVADVFLAV---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 81 nnKSNATPAEvrQDPADVQKMKKENVVSQALGIISGIFTPILPAISGAAMLKTLLIILTMTGLMEKTSQTWVVLNFAADT 160
Cdd:PRK09824 77 --NSVAGLGE--KAQQAPENDKKGNLLNRFIDVISGIFTPLIGVMAATGILKGMLALALTFGWTTEQSGTYKILFAASDA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 161 TFYFLPIMLAYTSAMKFGMNPFVAMTLGGMLLHPT----FTAMVATRSP-LSFLNVPVSLVHYGSTVIPVILMVWIASWA 235
Cdd:PRK09824 153 LFFFFPIILGYTAGKKFGGNPFTAMVIGGALVHPLmiaaFEAGQKADALgLDFLGIPVTLLNYSSSVIPIIFSAWLCSIL 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 236 ESLSERLSPRAILFFMKPFLTLLIMVPLGLTIIAPFGDFVGKGIGVGITYVNDHCIWLLPFIMAVFSPIFIMTGMHYAVT 315
Cdd:PRK09824 233 ERRLNAWLPSAIKNFFTPLLCLMVIVPLTFLLIGPLATWLSELLAAGYQWLYQAVPAFAGAVMGAFWQVFVIFGLHWGLV 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 316 mPITFQSLATNGFDMIGAGFLVSNIAQGAAALAAARFSKDADFRALASGAGFTALLGITEPALYGVNLKLKKPFYAVLVA 395
Cdd:PRK09824 313 -PLMINNLTVLGHDTMLPLLMPAVMAQVGAALGVFLCTRDAQKKVVAGSAFLAGLFGITEPAVYGVNLPLKRPFIFGCIS 391
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 917084786 396 GAVGGlfvGIMGVKRMTLAPTGLTTLPVF---IDPNNSMNIVFA-ISGAAISFCVAYLLTVVL 454
Cdd:PRK09824 392 GALGA---AIIGYAQTKVYSFGLPSIFTFmqtIPPTGIDFTVWAsVIGTVIAIGCAFVGTVMF 451
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
100-454 |
3.75e-82 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 261.42 E-value: 3.75e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 100 KMKKENVVSQALGIISGIFTPILPAISGAAMLKTLLIILTMTGLMEK---TSQTWVVLNFAADTTFYFLPIMLAYTSAMK 176
Cdd:COG1263 1 AKKKKNPLFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLLGEgsfLSGTYQILNAAGDAVFYFLPLLFAIGAAKG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 177 FGMNPFVAMTLGGMLLHPTFTAMVATRS-PLSFLNVPVsLVHYGSTVIPVILMVWIASWAESLSERLSPRAILFFMKPFL 255
Cdd:COG1263 81 FGGNPALAAVIGYLLVHPTLLNAYAVAGgYISFLGIPT-LIGYQGGVFPGILAGWLAAYLEKFLKKKLPDALGFFFVPIL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 256 TLLIMVPLGLTIIAPFGDFVGKGIGVGITYVNDHCIWLLPFIMAVFSPIFIMTGMHYAVTMPITFQsLATNGFDMIGAGF 335
Cdd:COG1263 160 TLLIMVPLALLVIGPIWPPIGNGIAAGLGWIYGLAGAIGGFIYGFLYRLLVPTGLHHGLNPIFWFL-LGGTGDDGLFPIL 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 336 LVSNIAQGAAALAAARFSK-DADFRALASGAGFTALL-GITEPALYGVNLKLKKPFYAVLVAGAVGGLFVGIMGVKRMTL 413
Cdd:COG1263 239 AAAMFGQPGAALAVYLKAKpNKKVKGLAISAALTAFLtGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAGLLGVKAFSF 318
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 917084786 414 APTGLTTLPVFIDPnNSMNIVFAISGAAISFCVAYLLTVVL 454
Cdd:COG1263 319 GVGGLIDFPSILNP-GATNLLLYLIGLVIAFVYYFVFTFLI 358
|
|
| PTS-IIBC-Tre |
TIGR01992 |
PTS system, trehalose-specific IIBC component; This model represents the fused enzyme II B and ... |
4-454 |
3.16e-64 |
|
PTS system, trehalose-specific IIBC component; This model represents the fused enzyme II B and C components of the trehalose-specific PTS sugar transporter system. Trehalose is converted to trehalose-6-phosphate in the process of translocation into the cell. These transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci and Streptococci which contain their own A domain as a C-terminal fusion. This family is closely related to the sucrose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively). In E. coli, B. subtilis and P. fluorescens the presence of this gene is associated with the presence of trehalase which degrades T6P to glucose and glucose-6-P. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.
Pssm-ID: 273916 Cd Length: 462 Bit Score: 214.59 E-value: 3.16e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 4 QQLAKDIIERIGGLNNVKDVTHCATRLRFTLNTMDPVDKGTVSALPGVLGAVESSGQFQVILGQ-QVGHVFSAITllknn 82
Cdd:TIGR01992 1 RKDAKAILEAIGGKENIEAATHCVTRLRFVLKDPSKVDVKALEQIDLVKGSFTNAGQFQVVIGPgTVDKVYAALI----- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 83 kSNATPAEVRQDPADVQKMKKENVVSQALGIISGIFTPILPAISGAAMLKTLLIILTMTGLMEKT----------SQTWV 152
Cdd:TIGR01992 76 -AETGIAEVSKEEVKKAAAKNMNPLQRLIKLLADIFIPILPAIITAGLLMGINNLLGAKGMSFGGqtlvevypqwAGIYN 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 153 VLNFAADTTFYFLPIMLAYTSAMKFGMNPFVAMTLGGMLLHPTFTAMVATRSPLSFLNVPV---------SLVHYGSTVI 223
Cdd:TIGR01992 155 FINLIAETAFHFLPALIGWSAVKKFGGSPILGIVLGLMLVHPQLLNAYLYGQALAEGNIPVwdlfgffeiQKVGYQGQVL 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 224 PVILMVWIASWAESLSERLSPRAILFFMKPFLTLLIMVPLGLTIIAPFGDFVGKGIGVGITYVNDHCIWLLPFIMAVFSP 303
Cdd:TIGR01992 235 PALLAGYVLAVIEKWLRKRVPDAIQLLVVPPVSLLVTGFLAHAIIGPIGRLIGNGITSGVTALFTSAAWLGGAIFGLLYA 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 304 IFIMTGMHYaVTMPITFQSLATNGFDMIGAGFLVSNIAQGAAALAAARFSKDADFRALASGAGFTALLGITEPALYGVNL 383
Cdd:TIGR01992 315 PLVITGLHH-MFLAVDLQLIGSLGGTFLWPMIALSNIAQGSAALGIIFMSRNEKEKGLSLTSAISAYLGVTEPAMFGVNL 393
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 917084786 384 KLKKPFYAVLVAGAVGGLFVGIMGVKRMTLaptGLTTLPVFIDPNNSMNIVFAIsGAAISFCVAYLLTVVL 454
Cdd:TIGR01992 394 KYKFPFIAAMIGSGLAGLLSGLNGVLANSI---GVGGLPGFISIQPQYWPVFAI-GMAIAIVVPFVLTIFF 460
|
|
| PRK11007 |
PRK11007 |
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional |
4-408 |
1.10e-41 |
|
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Pssm-ID: 182896 Cd Length: 473 Bit Score: 154.46 E-value: 1.10e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 4 QQLAKDIIERIGGLNNVKDVTHCATRLRFTLNTMDPVDKGTVSALPGVLGAVESSGQFQVILGQQVGHVFSAItLLKNNK 83
Cdd:PRK11007 7 QQDIDRLIELVGGRENIATVSHCITRLRFVLNDPANADPKEIEQLPMVKGCFTNAGQFQVVIGTEVGDYYKAL-IATTGQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 84 SNATPAEVRQdpADVQKMK-KENVVSQalgiISGIFTPILPA-ISGAAMLKTLLIILTMTGLMEKT----SQTWVV---- 153
Cdd:PRK11007 86 AEVDKEQAKK--AARQNMKwHERLISH----FAEIFFPLLPAlISGGLILGFRNVIGDIPMSDGQTlaqmYPFWQTiydf 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 154 LNFAADTTFYFLPIMLAYTSAMKFGMNPFVAMTLGGMLLHPTF--TAMVATRSP--LSFLNVPVSLVHYGSTVIPVILMV 229
Cdd:PRK11007 160 LWLIGEAIFFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQLmnAYLLGQQLPevWDFGLFSIEKVGYQAQVIPALLAG 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 230 WIASWAESLSERLSPRAILFFMKPFLTLLIMVPLGLTIIAPFGDFVGKGIGVGITYVndhciwllpfIMAVFSPI----- 304
Cdd:PRK11007 240 LALGFIETRLKRIVPDYLYLVVVPVCSLILAVFLAHALIGPFGRMIGDGVAFAVKAL----------MTGSFAPIgaalf 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 305 ------FIMTGMHYaVTMPITFQSLATNGFDMIGAGFLVSNIAQGAAALAAARFSKDADFRALASGAGFTALLGITEPAL 378
Cdd:PRK11007 310 gflyapLVITGVHQ-TTLAIDLQMIQSMGGTPVWPLIALSNIAQASAVVGIIIISRKHNEREISVPAAISAYLGVTEPAM 388
|
410 420 430
....*....|....*....|....*....|
gi 917084786 379 YGVNLKLKKPFYAVLVAGAVGGLFVGIMGV 408
Cdd:PRK11007 389 YGINLKYRFPMLCAMIGSALAGLICGLNGV 418
|
|
| pts-Glc |
TIGR00852 |
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside ... |
158-442 |
3.35e-41 |
|
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIC domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273299 Cd Length: 289 Bit Score: 148.62 E-value: 3.35e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 158 ADTTFYFLPIMLAYTSAMKFGMNPFVAMTLGGMLLHPTFTAMVAT--RSPLSFLNVPVSLVHYGSTVIPVILMVWIASWA 235
Cdd:TIGR00852 1 GSAAFFFLPLLFAIGAAKGFGGNPYLGAALAGILVHPVLNNAMGVgaQAVGNFFGFEIAKVGYTGVVGPIIVGAIALALH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 236 ESLSERLSPRAILFFMKPFLTLLIMVPLGLTIIAPFGDFVGK-GIGVGITYVNDHCIWLLPFIMAVFSPIFIMTGMHYAV 314
Cdd:TIGR00852 81 ERFLDKKLPDVLGFFLGPRFVVIIAGFVAILLIGPLGRVWPPvGISALLHWLYSAGGALGGAIFGFLYRLLVPTGLHHIF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 315 TMPITFQ--SLATNGFDMIGAGFLVSNIAQGAAALAAARFSKDADFRALASGAGFTALLGITEPALYGVNLKLKKPFYAV 392
Cdd:TIGR00852 161 YAIFIQLiaGGTVIGGGQVIPGDALANMAQGGAALAVFFTAGDAKFKSIGLPAAFSAGLGITEPAMYGVALRERRPFVAG 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 917084786 393 LVAGAVGGLFVGIMGVKrmtLAPTGLTTLPVF--IDPNNSMNIVFAISGAAI 442
Cdd:TIGR00852 241 LIGSALLTAFLTGITEP---LEFLFLFGAPGLysIHAVLAGSIFTVAIGMGI 289
|
|
| murP |
PRK09586 |
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed |
4-451 |
7.46e-36 |
|
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Pssm-ID: 181971 [Multi-domain] Cd Length: 476 Bit Score: 138.27 E-value: 7.46e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 4 QQLAKDIIERIGGLNNVKDVTHCATRLRFTLNTMDPVDKGTVSALPGVLGAVESSGQFQVILG----QQVGHVFSAITll 79
Cdd:PRK09586 6 SELLNTILTRVGGPGNIASCGNCMTRLRLTLHDSSLVDPAAIKTIEGVKGVILSDDQVQVVLGpgkaQRAAKAMNELL-- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 80 knnKSNATPAEVRQDPADVQKM----KKENVVSQALGIISGIFTPILPAISGAAMLKTLLIILTMTGLMEKTSQTWVV-- 153
Cdd:PRK09586 84 ---GEAAAPVQDLAEIAAQNKRqlkaKQTSGVQQFLAKFATIFTPLIPGFIAAGLLLGIATLIEQVMHVPADAQGTLPda 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 154 ---LNFAADTTFYFLPIMLAYTSAMKFG---MNPFVAMTLGGMLLHPTftAMVATRSPLS-FLNVPVSLvhyGSTVIPVI 226
Cdd:PRK09586 161 lnyMKVFSKGLFTFLSILIGYNAQQAFGgtgVNGAIIASLFLLGYNPA--ATTGYYAGFHdFFGLPIDP---RGNIIGVL 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 227 LMVWIASWAESLSERLSPRAILFFMKPFLTLLIMVPLGLTIIAPFGDFVGKGIGVGITYVNDHciwllPFIMAVFSPIF- 305
Cdd:PRK09586 236 IAAIAGARIERMVRRFMPDDLDMILTSLITLLITGALAFLIIMPLGGWLFEGMSWLFMHLNSN-----PFGCAVLAGLFl 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 306 --IMTGMHYAVtMPITFQSLATNGFD-------MIGAGFLVSNIAQGAaalaaaRFSKDADFRALASGAGFTALLGITEP 376
Cdd:PRK09586 311 iaVVFGVHQGF-IPVYFALMDSQGFNslfpilaMAGAGQVGAALALYW------RAQKHSALRTQVKGAIIPGLLGVGEP 383
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 377 ALYGVNLKLKKPFYAVLVAGAVGGLFVGI-------MGVKRMtLAPTGLTTLPVFIDPNNSMN--IVFAiSGAAISFCVA 447
Cdd:PRK09586 384 LIYGVTLPRMKPFVTACLGGAAGGFFIGLiawlglpVGLNSV-FGPSGLVALPLMTSAQGILPgmAVYA-GGLLVAYVCG 461
|
....
gi 917084786 448 YLLT 451
Cdd:PRK09586 462 FIFT 465
|
|
| PtsG2 |
COG1264 |
Phosphotransferase system IIB components [Carbohydrate transport and metabolism]; |
4-76 |
6.63e-26 |
|
Phosphotransferase system IIB components [Carbohydrate transport and metabolism];
Pssm-ID: 440876 [Multi-domain] Cd Length: 76 Bit Score: 100.19 E-value: 6.63e-26
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 917084786 4 QQLAKDIIERIGGLNNVKDVTHCATRLRFTLNTMDPVDKGTVSALpGVLGAVESSGQFQVILGQQVGHVFSAI 76
Cdd:COG1264 1 KELAKDILEALGGKENIVSVDHCATRLRVTVKDPSKVDEAALKKL-GVKGVVKNGGQVQVIIGPGVDKVADEI 72
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
4-76 |
4.75e-23 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 92.60 E-value: 4.75e-23
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 917084786 4 QQLAKDIIERIGGLNNVKDVTHCATRLRFTLNTMDPVDKGTVSALPGVLGAVESSGQFQVILGQQVGHVFSAI 76
Cdd:cd00212 1 EQLAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGPGVADVYKEA 73
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
115-389 |
2.20e-14 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 73.92 E-value: 2.20e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 115 SGIFTPILPAISGAAMLKTLLIILTMTGLMEKTSQTW-----VVLNFAADTTFYFLPIMLAYTSAMKF-GMNPFVAMTLG 188
Cdd:pfam02378 1 GDGFMPPIPLLIAGGILLGLGNLPNDTTGLPAGGFTGdsplaEILKQAGSAAFGILPILFAIGIAYGLaGGDGVAGAAGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 189 GMLLHPT-------FTAMVATRSPLSFLNVPVSLVHYGSTVIPVILMVWIASWAESLSERLSPRAILFFMKPFLTLLIMV 261
Cdd:pfam02378 81 IGLLSFNlaaaisvALTAAGLSGGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKNITIKLPDSLPFFVGKRFVPIITG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 262 PLGLTIIAPFGDFVGKGIGVGIT----YVNDHCIWLLPFIMAVFSPIFIMTGMHYAVTMPITF-----------QSLATN 326
Cdd:pfam02378 161 FVTLLVIGPVLGLIWPAIQGGLNalglLLIIAGGILGGLIFGFLERLLWPFGLHGAFIAIFWFlpiggsnpianQQAYGA 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 917084786 327 GFDMIGAGFLVSNI----AQGAAALAAARFSKDADFRALASGAGFTALLGITEPALYGVNLKLKKPF 389
Cdd:pfam02378 241 GAAHILTGGFDVMFggpgATLALYAAAFLFKKSKVKKLLGSAALTPFLFGITEPLEFGFPFVLNPPF 307
|
|
| PTS_EIIB |
pfam00367 |
phosphotransferase system, EIIB; |
8-35 |
1.86e-10 |
|
phosphotransferase system, EIIB;
Pssm-ID: 459785 [Multi-domain] Cd Length: 32 Bit Score: 55.45 E-value: 1.86e-10
10 20
....*....|....*....|....*...
gi 917084786 8 KDIIERIGGLNNVKDVTHCATRLRFTLN 35
Cdd:pfam00367 1 KEILEALGGKENIKSVDHCATRLRLTVK 28
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
28-116 |
5.18e-08 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 50.43 E-value: 5.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 28 TRLRFTLNTMDPVDKGTVSALPGVLGAVESSGQFQVILGQQ-VGHVFSAITllknnKSNATPAEV-RQDPADVQKMKKEN 105
Cdd:TIGR00826 1 TRLRLKTPGREKADEEAIAAGEGVKGVFTAAGQIQALGGTGnVNKVDACIT-----RLRVGVADVsKVDDAVLKKLGAHG 75
|
90
....*....|...
gi 917084786 106 VV--SQALGIISG 116
Cdd:TIGR00826 76 VNplQRAVQVISG 88
|
|
| PRK14905 |
PRK14905 |
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; ... |
3-66 |
1.39e-07 |
|
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Pssm-ID: 184898 [Multi-domain] Cd Length: 355 Bit Score: 53.50 E-value: 1.39e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 917084786 3 YQQLAKDIIERIGGLNNVKDVTHCATRLRFTLNTMDPVDKGTVSALPGVLGAVESSGQFQVILG 66
Cdd:PRK14905 274 FSEIAIQLIDHLGGKDNISALTHCASRIRVMLRNDGHIDKSAIEKIDCVKGLFSIANQYQIILG 337
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|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
4-66 |
4.08e-06 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 45.04 E-value: 4.08e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 917084786 4 QQLAKDIIERIGGLNNVKDVTHCATRLRFTLNTMDPVDKGTVSALpGVLGAVESSGQFQVILG 66
Cdd:TIGR00826 27 VFTAAGQIQALGGTGNVNKVDACITRLRVGVADVSKVDDAVLKKL-GAHGVNPLQRAVQVISG 88
|
|
| PRK09702 |
PRK09702 |
PTS sugar transporter subunit IIB; |
7-86 |
2.99e-05 |
|
PTS sugar transporter subunit IIB;
Pssm-ID: 77355 [Multi-domain] Cd Length: 161 Bit Score: 44.32 E-value: 2.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 917084786 7 AKDIIERIGGLNNVKDVTHCATRLRFTLNTMDPVDKGTVSALPGVLGAVESSGQFQVILGQQVGHVFSAITLLKNNKSNA 86
Cdd:PRK09702 73 AAGILQALGGVGNISSINNCATRLRIALHDMSQTLDDEVFKKLGAHGVFRSGDAIQVIIGLHVSQLREQLDSLINSHQSA 152
|
|
| PRK10110 |
PRK10110 |
PTS maltose transporter subunit IICB; |
10-82 |
1.87e-03 |
|
PTS maltose transporter subunit IICB;
Pssm-ID: 182245 [Multi-domain] Cd Length: 530 Bit Score: 40.49 E-value: 1.87e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 917084786 10 IIERIGGLNNVKDVTHCATRLRFTLNTMDPVDKGTVSALpGVLGAVESSGQ-FQVILGQQVGHVFSAITLLKNN 82
Cdd:PRK10110 455 ILEALGGADNIVSLDNCITRLRLSVKDMSLVDVQALKDN-RAIGVVQLNQHnLQVVIGPQVQSVKDEMAGLMHT 527
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